The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	27282	79598	4104044	transposase,protease,tRNA	Synechococcus_phage(25.0%)	47	NA	NA
AZY72577.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72578.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY72579.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72580.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY72581.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY75884.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72582.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY72583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY72584.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AZY72585.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY72586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY72587.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY72588.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY72589.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY72590.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY72591.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY72592.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY72593.1|45110_45746_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72594.1|45717_45954_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY72595.1|46081_46975_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72596.1|48144_49392_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY72597.1|49388_50003_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY72598.1|50138_51089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72599.1|51131_52388_+	MFS transporter	NA	NA	NA	NA	NA
AZY72600.1|53619_54354_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY72601.1|54359_54950_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY72602.1|54974_55664_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY72603.1|55660_56422_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY72604.1|56501_57401_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY72605.1|57494_58445_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72606.1|59245_60472_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY72607.1|60471_60891_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY72608.1|61074_62016_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75885.1|62439_63276_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72609.1|63470_64052_-|protease	protease	protease	NA	NA	NA	NA
AZY72610.1|64064_64382_-	ferredoxin	NA	NA	NA	NA	NA
AZY72611.1|64485_65544_-	oxidoreductase	NA	NA	NA	NA	NA
AZY72612.1|65578_66850_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY72613.1|67479_68661_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72614.1|70125_70440_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY72615.1|71632_73540_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY72616.1|73701_74322_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY72617.1|74353_74935_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY72618.1|75023_75275_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75886.1|75276_76026_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72619.1|76224_77634_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY75887.1|78653_79598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	107421	175244	4104044	transposase,tRNA	Bacillus_phage(22.22%)	58	NA	NA
AZY72647.1|107421_108372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72648.1|109270_110464_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY72649.1|110545_111175_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY72650.1|111236_111920_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY72651.1|111929_113612_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY75888.1|113899_114247_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY72652.1|114337_114655_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72653.1|114937_115954_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY72654.1|116029_116830_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY72655.1|116826_117702_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY72656.1|117712_119005_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY72657.1|119047_120088_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY72658.1|120193_121015_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY72659.1|121115_122066_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72660.1|122164_123070_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AZY72661.1|123066_123900_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY75889.1|124736_125747_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY75890.1|125743_126133_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72662.1|127026_128280_+	amidase	NA	NA	NA	NA	NA
AZY72663.1|128370_130071_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZY72664.1|130497_131145_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72665.1|131143_132583_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AZY72666.1|132675_132978_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZY72667.1|133005_133884_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72668.1|135150_136101_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72669.1|136519_138028_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
AZY72670.1|138774_142737_+	FAD-linked oxidase	NA	NA	NA	NA	NA
AZY72671.1|142789_143572_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72672.1|143659_144883_-	CoA transferase	NA	NA	NA	NA	NA
AZY75891.1|144866_145799_-	lipase	NA	NA	NA	NA	NA
AZY72673.1|145804_146617_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY72674.1|146637_147081_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72675.1|147099_147858_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75892.1|147929_148853_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72676.1|149019_149802_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72677.1|150568_151549_-	carboxylase	NA	NA	NA	NA	NA
AZY72678.1|151545_152274_-	allophanate hydrolase subunit 1	NA	NA	NA	NA	NA
AZY72679.1|152298_152730_-	glyoxalase	NA	NA	NA	NA	NA
AZY72680.1|152831_153707_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72681.1|153757_154978_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
AZY72682.1|155061_155523_-	metal-binding protein	NA	NA	NA	NA	NA
AZY72683.1|155628_157026_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY72684.1|157022_157700_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
AZY72685.1|157755_159066_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
AZY72686.1|159077_159776_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
AZY72687.1|159939_160716_+	ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	NA	NA	NA	NA	NA
AZY72688.1|160881_161904_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
AZY72689.1|162132_162768_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72690.1|162764_164327_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
AZY72691.1|164885_165836_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72692.1|167279_168182_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72693.1|168159_168789_-	LemA family protein	NA	NA	NA	NA	NA
AZY72694.1|169119_170502_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY72695.1|170535_171165_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY72696.1|171213_172821_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY72697.1|172845_173529_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75893.1|173610_174087_-	bacterioferritin	NA	NA	NA	NA	NA
AZY72698.1|174293_175244_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	178626	236262	4104044	transposase,protease,tRNA	Klosneuvirus(14.29%)	48	NA	NA
AZY72702.1|178626_180705_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY72703.1|180954_181227_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72704.1|181325_182414_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY72705.1|182417_184322_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY72706.1|184318_187993_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY72707.1|188053_188617_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY72708.1|188624_189047_-	glyoxalase	NA	NA	NA	NA	NA
AZY72709.1|189074_189494_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY75894.1|189522_189969_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY72710.1|190095_190593_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72711.1|190747_193018_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY72712.1|193066_194299_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY72713.1|194397_195348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72714.1|195393_196086_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY72715.1|196082_196976_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY72716.1|197370_198471_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY72717.1|198552_198927_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY72718.1|198986_201851_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY72719.1|201995_202736_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72720.1|202805_204017_+	CoA transferase	NA	NA	NA	NA	NA
AZY72721.1|204045_205014_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY72722.1|206733_207057_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY72723.1|207161_208211_-	cyclase	NA	NA	NA	NA	NA
AZY72724.1|208207_209032_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY72725.1|209032_209329_-	YciI family protein	NA	NA	NA	NA	NA
AZY72726.1|209354_209630_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY72727.1|209686_210331_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY72728.1|210330_211017_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY75895.1|211146_211998_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72729.1|212048_212774_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY72730.1|212805_214155_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY72731.1|214266_215199_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY72732.1|215656_218452_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY72733.1|219045_221988_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY72734.1|222059_222779_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY72735.1|222817_223366_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY72736.1|223520_224420_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY72737.1|224444_225395_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72738.1|225381_225561_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72739.1|225613_226309_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72740.1|226325_227738_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY72741.1|227850_229281_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY72742.1|229322_231236_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZY72743.1|231554_232121_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZY72744.1|232211_233213_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZY72745.1|233327_234278_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72746.1|234364_235315_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72747.1|235311_236262_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	250676	303012	4104044	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZY72759.1|250676_251618_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY72760.1|251614_253504_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY72761.1|253590_254229_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75896.1|254371_255616_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY72762.1|255687_256224_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY72763.1|256375_257767_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY72764.1|257783_258764_-	AEC family transporter	NA	NA	NA	NA	NA
AZY72765.1|258899_259883_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY72766.1|259947_260847_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72767.1|260953_262708_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY72768.1|262715_263840_-	CoA transferase	NA	NA	NA	NA	NA
AZY72769.1|263853_264834_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY72770.1|265564_266515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72771.1|267074_267620_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72772.1|267703_269323_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY72773.1|269338_270493_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY72774.1|270506_270632_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY72775.1|270628_272380_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY72776.1|272376_274056_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY72777.1|274091_274667_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY72778.1|275809_276088_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY72779.1|277131_278082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72780.1|278068_278284_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72781.1|278359_278521_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY72782.1|278528_278669_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72783.1|279187_279637_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY72784.1|279646_280258_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY72785.1|280416_281271_-	cytochrome c1	NA	NA	NA	NA	NA
AZY72786.1|281290_282673_-	cytochrome b	NA	NA	NA	NA	NA
AZY72787.1|282737_283379_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY72788.1|283518_283977_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY72789.1|284001_284778_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY72790.1|284831_285968_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY72791.1|285964_286915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72792.1|287013_287640_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY72793.1|287662_288589_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZY72794.1|288597_290184_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY72795.1|290180_291185_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZY72796.1|291384_292245_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY72797.1|292276_293278_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZY72798.1|293348_294158_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY72799.1|294235_296095_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZY72800.1|296223_297426_-	MFS transporter	NA	NA	NA	NA	NA
AZY72801.1|297539_298421_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72802.1|299923_300484_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZY72803.1|300543_301494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72804.1|301685_301946_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72805.1|302061_303012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	466018	521243	4104044	transposase,tRNA	Pseudomonas_phage(11.11%)	45	NA	NA
AZY72944.1|466018_468394_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZY72945.1|470164_471439_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZY72946.1|471525_472608_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZY72947.1|472618_473431_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZY72948.1|473467_473794_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZY72949.1|473798_474359_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZY72950.1|474599_475592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY72951.1|475610_476606_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY72952.1|476621_477998_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZY72953.1|477990_480372_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY75912.1|480388_480778_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72954.1|480904_481135_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72955.1|481239_482190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72956.1|482288_483239_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY72957.1|483235_484108_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY72958.1|485038_486325_+	cytochrome c	NA	NA	NA	NA	NA
AZY72959.1|486378_487305_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY72960.1|487323_487788_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY72961.1|488630_489422_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY72962.1|489453_490074_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY72963.1|490070_490700_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY72964.1|490712_491321_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY72965.1|491317_492307_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY72966.1|492412_493627_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY72967.1|495578_496529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75913.1|497962_499249_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72968.1|499414_499723_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY72969.1|499723_500389_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY72970.1|500429_502220_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY72971.1|502332_503193_+	endonuclease	NA	NA	NA	NA	NA
AZY72972.1|503189_504395_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY72973.1|504391_505276_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY72974.1|506792_507227_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY72975.1|507189_508188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72976.1|508299_509445_+	transporter	NA	NA	NA	NA	NA
AZY72977.1|509519_510848_+	amidase	NA	NA	NA	NA	NA
AZY72978.1|510881_511472_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY72979.1|511761_512556_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72980.1|513725_514460_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY75914.1|514466_515294_-	copper resistance protein B	NA	NA	NA	NA	NA
AZY72981.1|515340_517116_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY72982.1|517158_517656_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72983.1|517952_518903_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72984.1|519001_519952_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72985.1|520292_521243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	538361	590767	4104044	transposase,tRNA	Acinetobacter_phage(37.5%)	47	NA	NA
AZY72999.1|538361_539312_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73000.1|539410_541480_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZY73001.1|541522_543625_-	primosomal protein N'	NA	NA	NA	NA	NA
AZY73002.1|543931_545008_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZY75915.1|545083_545968_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73003.1|546150_546573_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZY73004.1|546582_547983_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZY73005.1|548025_548931_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZY73006.1|549029_550571_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZY73007.1|550605_551145_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZY73008.1|551157_551628_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZY73009.1|551765_552008_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZY73010.1|552124_553006_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZY75916.1|553078_553399_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY73011.1|554250_555201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73012.1|556524_557301_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY73013.1|557335_559108_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY73014.1|559109_560012_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY73015.1|560136_560496_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY73016.1|560527_561490_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY73017.1|561588_562539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73018.1|562551_563487_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY73019.1|563546_564386_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY73020.1|564382_565552_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY73021.1|565548_566838_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73022.1|566880_567255_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY73023.1|567360_568098_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY73024.1|568105_568810_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY73025.1|569073_570594_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY73026.1|570649_571213_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY73027.1|571231_572263_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY73028.1|572259_573048_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY73029.1|573223_574213_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73030.1|575968_576919_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73031.1|578141_579044_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73032.1|579045_579900_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY73033.1|579946_581056_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY73034.1|581066_581585_-	flavin reductase	NA	NA	NA	NA	NA
AZY73035.1|581614_582247_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY73036.1|582318_582978_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY73037.1|582974_584195_-	MFS transporter	NA	NA	NA	NA	NA
AZY73038.1|584463_585336_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY73039.1|585491_586229_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY75917.1|586231_587827_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY75918.1|587958_588948_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY73040.1|588944_589655_+	oxidoreductase	NA	NA	NA	NA	NA
AZY73041.1|589750_590767_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	608511	653581	4104044	transposase,tRNA	Escherichia_phage(20.0%)	38	NA	NA
AZY73052.1|608511_609528_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY73053.1|609612_609864_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY73054.1|609867_610683_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY73055.1|610795_611674_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY73056.1|611785_613549_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY73057.1|613664_615005_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY73058.1|616074_617499_-	ATP-binding protein	NA	NA	NA	NA	NA
AZY73059.1|617498_618200_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZY73060.1|619704_620655_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73061.1|620723_621722_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY73062.1|621726_622407_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY73063.1|622544_622937_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY73064.1|623044_624061_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY73065.1|624300_625086_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY73066.1|625180_626590_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY73067.1|626600_627401_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY73068.1|627421_628192_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY73069.1|628234_628702_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY73070.1|628698_629649_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73071.1|631596_632475_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY73072.1|633401_636380_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73073.1|636378_636747_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73074.1|636733_637684_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73075.1|637680_638769_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73076.1|638804_639668_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY73077.1|640807_641197_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY73078.1|641200_641983_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY73079.1|642016_642769_-	KR domain-containing protein	NA	NA	NA	NA	NA
AZY73080.1|643077_644217_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY73081.1|644213_645005_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY73082.1|645001_645751_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY73083.1|645747_646620_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY73084.1|646619_647621_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY73085.1|647617_648781_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY73086.1|648806_649490_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73087.1|649443_650778_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY73088.1|650770_651865_+	CoA transferase	NA	NA	NA	NA	NA
AZY75919.1|652630_653581_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	722328	754137	4104044	transposase,protease,tRNA,integrase	Pseudomonas_phage(33.33%)	23	719627:719645	739515:739533
719627:719645	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY73141.1|722328_722976_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY73142.1|722972_723755_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY73143.1|723827_724919_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY73144.1|725198_726326_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY73145.1|726667_727714_+	Fic family protein	NA	NA	NA	NA	NA
AZY75922.1|727724_727865_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY73146.1|727861_730981_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY73147.1|730982_733934_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY73148.1|733949_735161_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY73149.1|735157_735358_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73150.1|735344_736295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73151.1|736311_736806_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY73152.1|736809_737067_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73153.1|737091_738522_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY73154.1|738603_738888_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZY73155.1|739671_740622_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
739515:739533	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY73156.1|741040_743605_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY73157.1|743649_745503_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73158.1|745835_747407_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY73159.1|748848_749799_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73160.1|749884_750625_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73161.1|750851_751799_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73162.1|753186_754137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	1028164	1161939	4104044	transposase,protease	Bacillus_virus(12.5%)	113	NA	NA
AZY73380.1|1028164_1029451_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73381.1|1029489_1030863_+	amidase	NA	NA	NA	NA	NA
AZY73382.1|1030901_1031603_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY73383.1|1031901_1032891_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY73384.1|1032991_1033453_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY73385.1|1033468_1034017_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY73386.1|1034158_1035634_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY73387.1|1035739_1036831_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY73388.1|1036834_1037617_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY73389.1|1037626_1038415_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY73390.1|1039540_1039975_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY73391.1|1039971_1040982_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY73392.1|1041025_1041952_-	VOC family protein	NA	NA	NA	NA	NA
AZY73393.1|1042238_1042607_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY75944.1|1043753_1046243_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY73394.1|1046291_1046984_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY73395.1|1047056_1048256_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY73396.1|1048273_1049179_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73397.1|1049294_1050224_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY73398.1|1050249_1051596_+	MFS transporter	NA	NA	NA	NA	NA
AZY75945.1|1051623_1052373_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY73399.1|1052386_1053169_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY73400.1|1054372_1055518_-	porin	NA	NA	NA	NA	NA
AZY73401.1|1055994_1056831_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY73402.1|1056900_1057866_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73403.1|1057862_1058813_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73404.1|1058799_1058994_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73405.1|1059198_1059741_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73406.1|1061964_1062333_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73407.1|1062378_1063503_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75946.1|1064637_1065378_-	oxidoreductase	NA	NA	NA	NA	NA
AZY73408.1|1065481_1066102_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73409.1|1066205_1067156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73410.1|1067152_1069261_-	AsmA family protein	NA	NA	NA	NA	NA
AZY73411.1|1069405_1070065_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY75947.1|1070096_1070561_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY73412.1|1070836_1071022_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73413.1|1071073_1071826_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY73414.1|1071832_1073095_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY73415.1|1073136_1074375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73416.1|1075452_1076580_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY73417.1|1076590_1077418_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY73418.1|1077404_1078271_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY73419.1|1079637_1080042_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73420.1|1080133_1081084_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75948.1|1081453_1082365_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY73421.1|1082379_1083090_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73422.1|1083086_1084331_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY73423.1|1084332_1084767_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY73424.1|1084795_1085101_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY73425.1|1084994_1085213_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73426.1|1086247_1087198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73427.1|1087254_1088403_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY73428.1|1088483_1089434_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73429.1|1089965_1090763_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY73430.1|1090810_1091464_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY73431.1|1091420_1092509_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY73432.1|1092673_1094899_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY73433.1|1097176_1098073_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY73434.1|1097961_1098207_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73435.1|1098193_1099144_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73436.1|1099140_1100832_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AZY73437.1|1100893_1102090_+	amidohydrolase	NA	NA	NA	NA	NA
AZY73438.1|1102103_1102982_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73439.1|1103088_1104135_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
AZY73440.1|1104198_1104609_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY73441.1|1104619_1106092_+	magnesium transporter	NA	NA	NA	NA	NA
AZY73442.1|1107234_1108527_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY73443.1|1108533_1109544_-	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AZY73444.1|1109714_1110680_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY73445.1|1110854_1111685_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73446.1|1111771_1112038_+	exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA	NA
AZY73447.1|1112042_1112954_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AZY73448.1|1113003_1114866_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AZY73449.1|1115022_1115820_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
AZY73450.1|1116039_1116420_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AZY73451.1|1116467_1116791_+	primosomal replication protein N	NA	NA	NA	NA	NA
AZY73452.1|1116883_1117156_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AZY73453.1|1117171_1117627_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AZY73454.1|1117743_1118580_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73455.1|1118576_1119950_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AZY73456.1|1119970_1120939_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
AZY73457.1|1121018_1121996_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AZY73458.1|1123858_1124323_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY73459.1|1124325_1124778_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73460.1|1124874_1126182_+	alanine transaminase	NA	NA	NA	NA	NA
AZY73461.1|1126178_1127483_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
AZY73462.1|1127479_1128886_+	threonine synthase	NA	NA	NA	NA	NA
AZY73463.1|1129099_1129321_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
AZY73464.1|1129529_1130480_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73465.1|1130536_1131649_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY73466.1|1135572_1136349_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY73467.1|1136466_1136730_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY73468.1|1136830_1137835_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY73469.1|1138035_1139637_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY73470.1|1139662_1140421_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY73471.1|1140512_1141169_-	adenylate kinase	NA	NA	NA	NA	NA
AZY73472.1|1141259_1142024_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY73473.1|1142033_1142222_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73474.1|1142277_1143321_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY73475.1|1143317_1143731_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY73476.1|1143727_1144348_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY73477.1|1144628_1145579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73478.1|1145746_1147138_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY73479.1|1147210_1147789_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY73480.1|1147905_1149303_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY73481.1|1149418_1150624_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY73482.1|1150723_1151242_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY73483.1|1151336_1151582_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY73484.1|1151809_1152124_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY73485.1|1152213_1157403_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY75949.1|1157399_1159568_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY73486.1|1159587_1161939_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
>prophage 11
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	1185361	1249786	4104044	transposase	Streptococcus_phage(20.0%)	55	NA	NA
AZY73500.1|1185361_1186312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73501.1|1186308_1187640_-	MFS transporter	NA	NA	NA	NA	NA
AZY73502.1|1188879_1190901_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY73503.1|1190893_1191535_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY73504.1|1191531_1191939_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY73505.1|1191935_1192736_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY73506.1|1192810_1193515_+	oxidoreductase	NA	NA	NA	NA	NA
AZY73507.1|1193546_1194341_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY73508.1|1195385_1196336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73509.1|1196433_1196868_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY73510.1|1196950_1199287_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY73511.1|1199478_1200495_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY73512.1|1200685_1201276_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73513.1|1201366_1201672_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY75950.1|1202139_1203147_+	biotin synthase	NA	NA	NA	NA	NA
AZY73514.1|1203143_1204019_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73515.1|1204093_1205560_-	MFS transporter	NA	NA	NA	NA	NA
AZY75951.1|1205571_1206075_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY73516.1|1206321_1206753_+	lipoprotein	NA	NA	NA	NA	NA
AZY73517.1|1206762_1207668_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY73518.1|1207664_1211126_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73519.1|1211261_1211747_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY73520.1|1211727_1211979_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY73521.1|1211975_1212467_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY73522.1|1212463_1212985_+	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY73523.1|1212991_1214197_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY73524.1|1214341_1215439_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY73525.1|1215449_1216556_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73526.1|1216690_1217641_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73527.1|1217743_1218328_+	nitroreductase	NA	NA	NA	NA	NA
AZY75952.1|1218397_1219819_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY73528.1|1219926_1221273_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY73529.1|1221311_1222946_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY73530.1|1222989_1223328_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY73531.1|1223352_1223727_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY73532.1|1226839_1227721_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY73533.1|1227828_1229457_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY73534.1|1229498_1231016_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY73535.1|1231110_1232055_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY73536.1|1233236_1234139_-	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY73537.1|1234135_1235401_-	peptidase M48	NA	NA	NA	NA	NA
AZY73538.1|1235445_1235991_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY73539.1|1236024_1236711_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY73540.1|1236682_1237612_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY73541.1|1237783_1238773_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY73542.1|1238837_1239122_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY73543.1|1239137_1239902_+	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY73544.1|1239898_1240405_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY73545.1|1242603_1244256_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY73546.1|1244266_1245055_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY73547.1|1245054_1245525_+	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY73548.1|1245599_1246913_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY73549.1|1246966_1247572_-	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY73550.1|1247888_1248839_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73551.1|1248835_1249786_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	1448149	1502374	4104044	transposase,tRNA	Salmonella_phage(22.22%)	45	NA	NA
AZY73715.1|1448149_1449100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73716.1|1449266_1449620_+	cytochrome C	NA	NA	NA	NA	NA
AZY73717.1|1449632_1449995_+	cytochrome	NA	NA	NA	NA	NA
AZY73718.1|1450036_1450462_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY73719.1|1450664_1451921_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY73720.1|1452119_1453100_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73721.1|1453249_1454491_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AZY73722.1|1454589_1455540_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73723.1|1455548_1456244_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY73724.1|1459065_1459665_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY73725.1|1459675_1461841_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY73726.1|1461864_1463649_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY73727.1|1463648_1463738_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY73728.1|1464432_1464705_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY73729.1|1464704_1466771_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY73730.1|1466767_1467718_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73731.1|1467816_1468767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73732.1|1468882_1469215_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY73733.1|1469211_1469898_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY73734.1|1469884_1470844_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY75961.1|1470885_1473246_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY73735.1|1473245_1473878_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY73736.1|1473940_1475320_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY73737.1|1475366_1476722_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY73738.1|1477000_1477249_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73739.1|1477436_1477754_-	virulence factor	NA	NA	NA	NA	NA
AZY73740.1|1478026_1478542_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY73741.1|1478635_1478797_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73742.1|1478812_1479568_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY73743.1|1479906_1480113_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73744.1|1480120_1480780_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY73745.1|1481074_1483279_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY73746.1|1483389_1484613_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY73747.1|1484735_1485710_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY73748.1|1485777_1486971_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY73749.1|1486985_1487786_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY73750.1|1487782_1489639_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY73751.1|1489635_1490241_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY73752.1|1490259_1491645_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY73753.1|1492370_1493597_+	transporter	NA	NA	NA	NA	NA
AZY73754.1|1493685_1494468_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY73755.1|1495541_1496315_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY73756.1|1499347_1500298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73757.1|1500329_1501427_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY73758.1|1501423_1502374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	1544221	1604128	4104044	transposase,protease,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZY73804.1|1544221_1544710_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY73805.1|1544827_1545406_+|protease	protease	protease	NA	NA	NA	NA
AZY73806.1|1545478_1545880_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY73807.1|1545978_1546929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73808.1|1546935_1548048_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY73809.1|1548734_1549937_+	MFS transporter	NA	NA	NA	NA	NA
AZY73810.1|1550140_1552801_+	hypothetical protein	NA	NA	NA	NA	NA
AZY73811.1|1552813_1556218_+	nuclease	NA	NA	NA	NA	NA
AZY73812.1|1556884_1559110_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY73813.1|1559156_1559483_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY73814.1|1559533_1560142_+	recombination protein RecR	NA	NA	NA	NA	NA
AZY73815.1|1561257_1562022_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY73816.1|1562018_1562618_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75962.1|1562721_1563567_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY73817.1|1563632_1564259_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY73818.1|1564255_1565206_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73819.1|1565192_1565381_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73820.1|1565304_1566426_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY73821.1|1566406_1567408_-	aminopeptidase	NA	NA	NA	NA	NA
AZY75963.1|1567513_1569028_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY73822.1|1569009_1569960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73823.1|1570070_1571375_-	peptidase	NA	NA	NA	NA	NA
AZY73824.1|1571486_1572047_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY73825.1|1572314_1572869_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY73826.1|1573324_1573540_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY75964.1|1573794_1576392_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY73827.1|1576388_1577576_+	cupin	NA	NA	NA	NA	NA
AZY73828.1|1578233_1578848_+	fimbrial protein	NA	NA	NA	NA	NA
AZY73829.1|1578936_1580064_-	lipoprotein	NA	NA	NA	NA	NA
AZY73830.1|1580075_1580981_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY73831.1|1581873_1582824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY73832.1|1583005_1583758_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY73833.1|1583826_1584486_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY73834.1|1584482_1585211_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY73835.1|1585223_1587503_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY73836.1|1587527_1587731_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY73837.1|1587772_1588420_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY73838.1|1588540_1589458_-	cytochrome C	NA	NA	NA	NA	NA
AZY73839.1|1589454_1590168_-	cytochrome C	NA	NA	NA	NA	NA
AZY73840.1|1590405_1591176_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY73841.1|1591180_1591780_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY73842.1|1592024_1593515_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZY73843.1|1593573_1593858_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY73844.1|1593854_1593983_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73845.1|1593995_1594151_-	hypothetical protein	NA	NA	NA	NA	NA
AZY73846.1|1594423_1595350_-	YicC family protein	NA	NA	NA	NA	NA
AZY73847.1|1595486_1596227_+	ribonuclease PH	NA	NA	NA	NA	NA
AZY73848.1|1596393_1597770_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY73849.1|1597951_1598857_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY73850.1|1598891_1600631_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY73851.1|1600508_1602311_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY73852.1|1602428_1603079_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY73853.1|1603177_1604128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	2165411	2225174	4104044	transposase,protease,tRNA	Klosneuvirus(30.0%)	55	NA	NA
AZY74272.1|2165411_2168036_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY74273.1|2168022_2168277_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY74274.1|2168343_2168925_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74275.1|2169228_2169489_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY74276.1|2169654_2170278_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY74277.1|2170277_2171051_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY74278.1|2171047_2172256_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY74279.1|2172281_2172755_-	RidA family protein	NA	NA	NA	NA	NA
AZY74280.1|2173875_2174826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74281.1|2174924_2176274_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY74282.1|2177039_2177795_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY74283.1|2177887_2180770_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY74284.1|2181092_2181518_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY74285.1|2181545_2182694_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY74286.1|2182690_2183197_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY74287.1|2183203_2184499_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY74288.1|2184539_2185844_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY74289.1|2185845_2186484_+	hypothetical protein	NA	NA	NA	NA	NA
AZY74290.1|2186486_2187647_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY74291.1|2187673_2189029_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY74292.1|2189032_2190103_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY74293.1|2190241_2190478_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY74294.1|2190565_2191672_+	GTPase HflX	NA	NA	NA	NA	NA
AZY74295.1|2191637_2192942_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY74296.1|2192960_2193860_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY74297.1|2194043_2195201_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY74298.1|2195265_2196573_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY74299.1|2196686_2197226_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY74300.1|2197503_2197716_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY74301.1|2197735_2199766_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY75995.1|2200565_2202734_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY74302.1|2203143_2203443_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74303.1|2203727_2204141_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY74304.1|2204100_2205051_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74305.1|2205149_2206100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74306.1|2206086_2206287_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74307.1|2206299_2207385_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY74308.1|2207400_2208162_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY74309.1|2208158_2209082_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY74310.1|2209180_2209705_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY74311.1|2209713_2210457_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY74312.1|2210552_2210792_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74313.1|2210805_2210958_-	lipoprotein	NA	NA	NA	NA	NA
AZY74314.1|2211043_2212534_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY74315.1|2212625_2213564_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY74316.1|2213560_2213737_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY74317.1|2213739_2214402_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY75996.1|2216023_2216167_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY74318.1|2216163_2217138_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74319.1|2218250_2219525_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY74320.1|2219622_2220822_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY74321.1|2220818_2221472_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY74322.1|2221468_2222905_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY74323.1|2222892_2223252_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY74324.1|2224223_2225174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	2919673	2994833	4104044	transposase,holin,tRNA	uncultured_Mediterranean_phage(23.08%)	59	NA	NA
AZY74875.1|2919673_2921194_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY74876.1|2921236_2921539_+	hypothetical protein	NA	NA	NA	NA	NA
AZY74877.1|2921535_2922168_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY74878.1|2922246_2924112_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY74879.1|2924108_2924924_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY74880.1|2924931_2926047_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY74881.1|2926951_2927830_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY74882.1|2927829_2928654_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY74883.1|2929953_2932833_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY74884.1|2932814_2933591_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY74885.1|2933683_2935147_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY74886.1|2935143_2935515_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY74887.1|2935532_2936846_+	hypothetical protein	NA	NA	NA	NA	NA
AZY74888.1|2936882_2937341_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY74889.1|2937453_2938404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74890.1|2938400_2939414_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY74891.1|2939553_2940540_+	homoserine kinase	NA	NA	NA	NA	NA
AZY74892.1|2940583_2941384_+	hypothetical protein	NA	NA	NA	NA	NA
AZY74893.1|2942186_2943137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74894.1|2943288_2943891_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74895.1|2943909_2944542_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY74896.1|2944779_2946666_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY74897.1|2946684_2947527_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY74898.1|2947523_2948882_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY74899.1|2949102_2949897_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY74900.1|2950127_2951621_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY74901.1|2951856_2953938_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY74902.1|2954132_2955173_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY74903.1|2955307_2956324_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY74904.1|2956345_2957203_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY76032.1|2957247_2958024_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY74905.1|2959366_2959831_-	barstar family protein 2	NA	NA	NA	NA	NA
AZY74906.1|2961037_2963326_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY74907.1|2963442_2964315_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74908.1|2964357_2965512_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY74909.1|2965546_2966377_-	transglycosylase	NA	NA	NA	NA	NA
AZY74910.1|2966460_2968005_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY74911.1|2968047_2968407_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74912.1|2968408_2968822_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY74913.1|2968862_2969180_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY74914.1|2969264_2969981_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76033.1|2970244_2971666_+	siroheme synthase	NA	NA	NA	NA	NA
AZY74915.1|2971732_2974480_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY74916.1|2974812_2975829_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY76034.1|2976164_2976806_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY74917.1|2976896_2978333_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY74918.1|2978490_2979564_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY74919.1|2979560_2980697_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY74920.1|2980841_2981186_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY74921.1|2981252_2983133_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY74922.1|2983182_2984118_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY74923.1|2984450_2985467_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY74924.1|2986404_2987832_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY74925.1|2987828_2988851_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY74926.1|2988840_2989314_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY74927.1|2989439_2990342_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY74928.1|2990338_2991982_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY76035.1|2991978_2992986_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY74929.1|2993816_2994833_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	3028952	3101440	4104044	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY74961.1|3028952_3029903_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74962.1|3029945_3031121_+	flagellin FliC	NA	NA	NA	NA	NA
AZY74963.1|3031342_3033133_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY74964.1|3033145_3034807_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY74965.1|3034819_3037525_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY74966.1|3037817_3039572_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY74967.1|3039568_3040195_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY74968.1|3040191_3041043_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY74969.1|3041118_3043233_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY74970.1|3043383_3044034_+	SCO family protein	NA	NA	NA	NA	NA
AZY74971.1|3044179_3044431_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY74972.1|3044500_3045883_-	multidrug transporter	NA	NA	NA	NA	NA
AZY74973.1|3045879_3049059_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY76037.1|3049866_3050784_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY74974.1|3050835_3051567_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY74975.1|3051626_3052199_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY74976.1|3053707_3054724_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY74977.1|3054861_3055911_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY74978.1|3056015_3056966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74979.1|3057061_3057787_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY74980.1|3057997_3058378_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY74981.1|3058683_3059556_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY74982.1|3059563_3059944_-	hypothetical protein	NA	NA	NA	NA	NA
AZY74983.1|3060097_3061372_-	radical SAM protein	NA	NA	NA	NA	NA
AZY76038.1|3062859_3063768_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY74984.1|3064565_3065630_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY74985.1|3067460_3068495_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY74986.1|3068684_3069326_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY74987.1|3069408_3071235_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY74988.1|3071478_3072408_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY74989.1|3072407_3073157_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY74990.1|3073228_3074143_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY74991.1|3074162_3075308_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY74992.1|3075368_3076280_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY74993.1|3076360_3077311_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY74994.1|3077409_3077994_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY74995.1|3078028_3079018_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY74996.1|3079014_3079956_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY74997.1|3079952_3081173_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY74998.1|3081215_3081530_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY74999.1|3081721_3082081_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY75000.1|3082082_3083813_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY75001.1|3083985_3084657_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY75002.1|3084671_3086000_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY75003.1|3085996_3086896_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY75004.1|3086982_3088068_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY75005.1|3088060_3089194_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY75006.1|3089193_3091875_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY75007.1|3092245_3092827_+	OmpA family protein	NA	NA	NA	NA	NA
AZY75008.1|3092904_3093678_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY75009.1|3093674_3094352_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY75010.1|3094567_3095749_+	MFS transporter	NA	NA	NA	NA	NA
AZY75011.1|3096252_3096483_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75012.1|3096521_3096704_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY75013.1|3096733_3097684_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76039.1|3097813_3098206_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY75014.1|3098482_3099394_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY75015.1|3099518_3100493_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY75016.1|3100489_3101440_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	3118650	3194476	4104044	transposase,holin	Bacillus_phage(20.0%)	58	NA	NA
AZY75034.1|3118650_3119601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75035.1|3120777_3122148_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY75036.1|3122180_3122972_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY75037.1|3122984_3124040_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75038.1|3124065_3124941_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75039.1|3125046_3125295_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75040.1|3125329_3126784_-	carboxylase	NA	NA	NA	NA	NA
AZY75041.1|3126780_3127302_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY75042.1|3127330_3128683_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY75043.1|3128906_3131795_-	HD domain-containing protein	NA	NA	NA	NA	NA
AZY75044.1|3133939_3135241_+	phospholipase	NA	NA	NA	NA	NA
AZY75045.1|3135255_3135972_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY75046.1|3136253_3136934_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY75047.1|3136945_3137113_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75048.1|3137221_3137374_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75049.1|3137461_3138121_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY75050.1|3138501_3140352_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY75051.1|3140348_3141299_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75052.1|3142462_3144178_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY75053.1|3144188_3144680_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY75054.1|3144752_3145769_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY75055.1|3145936_3146716_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY75056.1|3146734_3147262_-	lipoprotein	NA	NA	NA	NA	NA
AZY75057.1|3147260_3147467_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75058.1|3147555_3147825_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY75059.1|3147915_3150075_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY75060.1|3150195_3150915_+	lipoprotein	NA	NA	NA	NA	NA
AZY75061.1|3150911_3151862_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75062.1|3152002_3153220_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY75063.1|3153213_3153825_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY75064.1|3154458_3155436_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY75065.1|3155579_3156326_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY75066.1|3156347_3156794_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY75067.1|3157581_3159813_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY75068.1|3159835_3160636_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY75069.1|3160917_3162150_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY75070.1|3162260_3163250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY75071.1|3163280_3164669_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY75072.1|3166267_3167251_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY75073.1|3168657_3169482_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY75074.1|3169559_3170483_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY75075.1|3170563_3171805_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY75076.1|3171838_3172840_+	peptidase M14	NA	NA	NA	NA	NA
AZY75077.1|3172968_3173940_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY75078.1|3173964_3176049_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY75079.1|3176115_3177108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76040.1|3177216_3178551_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY75080.1|3178576_3180589_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY76041.1|3180585_3182634_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY75081.1|3182737_3183385_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY75082.1|3183525_3184020_+	azurin	NA	NA	NA	NA	NA
AZY75083.1|3184063_3184735_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY75084.1|3184749_3186243_-	RND transporter	NA	NA	NA	NA	NA
AZY75085.1|3186239_3189353_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY75086.1|3189365_3190472_-	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY75087.1|3190595_3191264_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY75088.1|3191484_3192435_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75089.1|3192517_3194476_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 18
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	3238505	3306080	4104044	transposase	Bacillus_virus(25.0%)	55	NA	NA
AZY75127.1|3238505_3239456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75128.1|3239561_3240497_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY75129.1|3240696_3242391_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY75130.1|3242425_3243352_+	VOC family protein	NA	NA	NA	NA	NA
AZY76044.1|3243420_3244518_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75131.1|3244536_3245400_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY75132.1|3245411_3246194_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY75133.1|3246190_3247309_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY75134.1|3247305_3248838_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY75135.1|3248878_3249886_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY75136.1|3250030_3250753_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY75137.1|3250768_3251791_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY75138.1|3252107_3252842_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY75139.1|3252926_3254672_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY75140.1|3254668_3255421_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY75141.1|3255465_3256422_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY75142.1|3256510_3257077_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75143.1|3257084_3257945_-	aminotransferase	NA	NA	NA	NA	NA
AZY75144.1|3257974_3258718_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY75145.1|3258734_3259418_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY75146.1|3260255_3261170_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY75147.1|3261234_3262143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY75148.1|3262233_3263658_-	protein CyaE	NA	NA	NA	NA	NA
AZY75149.1|3263659_3264982_-	protein CyaD	NA	NA	NA	NA	NA
AZY75150.1|3264978_3267117_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY75151.1|3267194_3272315_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY75152.1|3272501_3272681_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75153.1|3272763_3273351_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY75154.1|3273366_3274848_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY75155.1|3274902_3276756_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75156.1|3277018_3278356_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY75157.1|3278390_3280388_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY75158.1|3280405_3282454_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY75159.1|3282584_3283451_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY75160.1|3283719_3284685_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY75161.1|3284799_3285948_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY75162.1|3286372_3286684_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY75163.1|3286717_3286978_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY75164.1|3287127_3288261_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY75165.1|3288331_3289468_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY75166.1|3289633_3290428_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY75167.1|3290490_3290934_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY75168.1|3291049_3292000_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75169.1|3291986_3292175_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75170.1|3292122_3292530_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY75171.1|3292602_3294798_+	DNA methylase	NA	NA	NA	NA	NA
AZY75172.1|3295019_3295970_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75173.1|3295929_3296454_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY75174.1|3296585_3297557_+	FecR family protein	NA	NA	NA	NA	NA
AZY75175.1|3297676_3300121_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY75176.1|3300136_3300727_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY75177.1|3300970_3301921_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75178.1|3302078_3303344_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY75179.1|3303377_3304475_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY75180.1|3305129_3306080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	3317367	3372090	4104044	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(18.18%)	57	NA	NA
AZY75191.1|3317367_3318318_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY75192.1|3319049_3319427_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY75193.1|3319411_3320113_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75194.1|3320256_3320949_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY75195.1|3320948_3322052_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY75196.1|3322161_3324534_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY75197.1|3324530_3326090_+	chaperone SurA	NA	NA	NA	NA	NA
AZY75198.1|3326114_3326912_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY75199.1|3326943_3328089_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY75200.1|3328193_3329636_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY76045.1|3329638_3330727_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75201.1|3333940_3334159_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75202.1|3335083_3335641_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76046.1|3335616_3335967_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75203.1|3336135_3336930_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY75204.1|3336926_3337976_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY75205.1|3337975_3338665_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY75206.1|3338751_3339249_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY75207.1|3339280_3340597_-	protein TolB	NA	NA	NA	NA	NA
AZY75208.1|3340613_3341588_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY75209.1|3341624_3342083_-	protein TolR	NA	NA	NA	NA	NA
AZY75210.1|3342082_3342763_-	protein TolQ	NA	NA	NA	NA	NA
AZY75211.1|3342765_3343194_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY75212.1|3343246_3344977_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY75213.1|3345042_3345615_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY75214.1|3346636_3347308_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY75215.1|3347314_3347515_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76047.1|3347857_3348139_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75216.1|3348135_3348669_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY75217.1|3348650_3349202_-	lysozyme	NA	NA	NA	NA	NA
AZY75218.1|3349180_3349423_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75219.1|3349427_3350240_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75220.1|3350239_3350503_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75221.1|3350721_3351138_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75222.1|3351142_3355099_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY75223.1|3355091_3355481_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY75224.1|3355477_3356011_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY75225.1|3356078_3356438_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75226.1|3356447_3359060_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY75227.1|3359085_3359376_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY75228.1|3359393_3359723_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY75229.1|3359732_3360251_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY75230.1|3360505_3361006_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY75231.1|3361013_3361436_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75232.1|3361432_3361831_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY75233.1|3361827_3362223_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY75234.1|3362222_3362423_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75235.1|3362424_3362907_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY75236.1|3362969_3363221_-	hypothetical protein	NA	NA	NA	NA	NA
AZY75237.1|3363230_3363878_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY75238.1|3365272_3365875_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY75239.1|3365997_3366240_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY76048.1|3366245_3367301_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY75240.1|3367329_3368748_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY75241.1|3368750_3370028_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY76049.1|3370014_3370464_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY75242.1|3371139_3372090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025528	Bordetella pertussis strain D869 chromosome, complete genome	4104044	3755229	3761578	4104044	integrase	Burkholderia_phage(16.67%)	11	3746625:3746639	3761818:3761832
3746625:3746639	attL	TCGCGCGGCATGCCG	NA	NA	NA	NA
AZY75574.1|3755229_3755697_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY75575.1|3755930_3756308_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75576.1|3756304_3756487_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75577.1|3756490_3757477_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY75578.1|3757473_3758121_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY75579.1|3758178_3758706_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75580.1|3758739_3759927_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY75581.1|3759916_3760279_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY75582.1|3760271_3760391_+	hypothetical protein	NA	NA	NA	NA	NA
AZY75583.1|3760391_3760592_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY75584.1|3760588_3761578_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
3761818:3761832	attR	CGGCATGCCGCGCGA	NA	NA	NA	NA
