The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	0	122073	4104745	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZY36207.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY36208.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY36209.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY36210.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY36211.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY36212.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY36213.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY36214.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY36215.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY36216.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY36217.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY36218.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY36219.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY36220.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY39594.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY36221.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36222.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY36223.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY36224.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36225.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY36226.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36227.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY36228.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY39595.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36229.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY36230.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY36231.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36232.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY36233.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY36234.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY36235.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY36236.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY36237.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY36238.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY36239.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY36240.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY36241.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36242.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36243.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY36244.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36245.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY36246.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY36247.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36248.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY36249.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY36250.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY36251.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY36252.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY36253.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36254.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36255.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY36256.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY36257.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36258.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36259.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY36260.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY36261.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY36262.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY36263.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36264.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36265.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY36266.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY36267.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY36268.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY36269.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39596.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36270.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY36271.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39597.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36272.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY36273.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY36274.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY36275.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY36276.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY36277.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY36278.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY36279.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY36280.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY36281.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY36282.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY36283.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY36284.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36285.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY36286.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY36287.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY36288.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY36289.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36290.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY36291.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY36292.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY36293.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY36294.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY36295.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY36296.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY36297.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY36298.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY36299.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36300.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY36301.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY36302.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY36303.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY39598.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY36304.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39599.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY36305.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY36306.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY36307.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36308.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY36309.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY36310.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	164893	225404	4104745	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY36342.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36343.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36344.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZY36345.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY36346.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY36347.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY36348.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39604.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZY36349.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36350.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZY36351.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZY36352.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY36353.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY36354.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36355.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY36356.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY36357.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY36358.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY36359.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZY36360.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY39605.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY36361.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36362.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY36363.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY36364.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36365.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY36366.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY36367.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY36368.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY36369.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY36370.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36371.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZY36372.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY36373.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36374.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY36375.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZY36376.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY36377.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZY36378.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY36379.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY36380.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY39606.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36381.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY36382.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY36383.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY36384.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY36385.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY36386.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY36387.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY36388.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY36389.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	233336	287973	4104745	tRNA,protease,transposase	Bacillus_phage(25.0%)	49	NA	NA
AZY36397.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36398.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36399.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36400.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY36401.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY36402.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36403.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36404.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36405.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY36406.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY36407.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY36408.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY36409.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY36410.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY36411.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY36412.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY36413.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39607.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY36414.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY36415.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY36416.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZY36417.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY36418.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36419.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY36420.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZY36421.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY36422.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36423.1|266622_267573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36424.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36425.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY36426.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY36427.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY36428.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY36429.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY36430.1|275149_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY36431.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY36432.1|278189_279140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36433.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36434.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY36435.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36436.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY36437.1|280704_281316_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY36438.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
AZY36439.1|282348_283731_-	cytochrome b	NA	NA	NA	NA	NA
AZY36440.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY36441.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY36442.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY39608.1|285889_287026_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY36443.1|287022_287973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	556358	615658	4104745	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY36665.1|556358_557309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36666.1|558632_559409_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY36667.1|559443_561216_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY36668.1|561217_562120_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY36669.1|562244_562604_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY36670.1|562635_563598_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY36671.1|563696_564647_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36672.1|564659_565595_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY36673.1|565654_566494_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY36674.1|566490_567660_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY36675.1|567656_568946_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36676.1|568988_569363_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY36677.1|569468_570206_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY36678.1|570213_570918_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY36679.1|571181_572702_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY36680.1|572757_573321_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY36681.1|573339_574371_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY36682.1|574367_575156_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY36683.1|575331_576321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36684.1|578077_579028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36685.1|580250_581153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36686.1|581154_582009_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY36687.1|582055_583165_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY36688.1|583175_583694_-	flavin reductase	NA	NA	NA	NA	NA
AZY36689.1|583723_584356_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY36690.1|584427_585087_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY36691.1|585083_586304_-	MFS transporter	NA	NA	NA	NA	NA
AZY36692.1|586572_587445_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY36693.1|587600_588338_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36694.1|588340_589936_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY39629.1|590067_591057_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY36695.1|591053_591764_+	oxidoreductase	NA	NA	NA	NA	NA
AZY39630.1|591859_592876_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY36696.1|593147_593774_-	aminotransferase	NA	NA	NA	NA	NA
AZY36697.1|593829_594957_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY36698.1|594962_600680_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY36699.1|600963_601179_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36700.1|601247_602192_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY36701.1|602380_603316_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY36702.1|603433_605005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36703.1|605084_606293_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY36704.1|606790_607708_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY36705.1|610068_610290_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39631.1|610620_611637_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY36706.1|611721_611973_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY36707.1|611976_612792_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY36708.1|612904_613783_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY36709.1|613894_615658_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	621813	675554	4104745	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZY36713.1|621813_622764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36714.1|622832_623831_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY36715.1|623835_624516_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY36716.1|624653_625046_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY39632.1|625153_626170_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY36717.1|626409_627195_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY36718.1|627289_628699_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY36719.1|628709_629510_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY36720.1|629530_630301_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY36721.1|630343_630811_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY36722.1|630807_631758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36723.1|633706_634585_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY36724.1|635511_638490_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36725.1|638488_638857_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36726.1|638843_639794_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36727.1|639790_640879_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36728.1|640914_641778_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY36729.1|642917_643307_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY36730.1|643310_644093_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY36731.1|644126_644879_-	KR domain-containing protein	NA	NA	NA	NA	NA
AZY36732.1|645187_646327_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36733.1|646323_647115_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY36734.1|647111_647861_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY36735.1|647857_648730_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY36736.1|648729_649731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY36737.1|649727_650891_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY36738.1|650916_651600_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36739.1|651553_652888_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY36740.1|652880_653975_+	CoA transferase	NA	NA	NA	NA	NA
AZY39633.1|654741_655692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36741.1|657632_658892_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36742.1|658888_660427_+	SpoVR family protein	NA	NA	NA	NA	NA
AZY36743.1|660423_661620_-	MFS transporter	NA	NA	NA	NA	NA
AZY36744.1|661616_663008_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY36745.1|663004_664021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY36746.1|664089_665325_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY36747.1|665425_666220_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36748.1|666589_666997_+	GFA family protein	NA	NA	NA	NA	NA
AZY36749.1|667414_667687_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY36750.1|668268_669123_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY36751.1|669223_669526_+	urease subunit gamma	NA	NA	NA	NA	NA
AZY36752.1|669552_670188_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY36753.1|670204_670513_+	urease subunit beta	NA	NA	NA	NA	NA
AZY36754.1|670509_672225_+	urease subunit alpha	NA	NA	NA	NA	NA
AZY36755.1|672227_672845_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY36756.1|672945_673530_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY36757.1|673554_674199_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY36758.1|674603_675554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	724441	765491	4104745	integrase,tRNA,protease,transposase	Pseudomonas_phage(33.33%)	32	721740:721758	741628:741646
721740:721758	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY36795.1|724441_725089_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY36796.1|725085_725868_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY36797.1|725940_727032_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY36798.1|727311_728439_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY36799.1|728780_729827_+	Fic family protein	NA	NA	NA	NA	NA
AZY39636.1|729837_729978_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY36800.1|729974_733094_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY36801.1|733095_736047_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY36802.1|736062_737274_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY36803.1|737270_737471_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36804.1|737457_738408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36805.1|738424_738919_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY36806.1|738922_739180_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36807.1|739204_740635_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY36808.1|740716_741001_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZY36809.1|741784_742735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
741628:741646	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY36810.1|743153_745718_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY36811.1|745762_747616_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36812.1|747948_749520_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY36813.1|750961_751912_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36814.1|751997_752738_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36815.1|752964_753912_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36816.1|755299_756250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36817.1|756348_757299_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36818.1|757492_758308_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36819.1|758440_759880_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY36820.1|759893_760235_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY36821.1|760289_761945_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY36822.1|762096_763107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY36823.1|763239_764013_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36824.1|764356_764554_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36825.1|764540_765491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	775418	823036	4104745	holin,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZY36833.1|775418_776369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36834.1|776507_777260_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY36835.1|777498_779223_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY36836.1|779242_780502_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY36837.1|780516_781611_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY36838.1|781607_783734_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY36839.1|783746_784427_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY39640.1|784704_786078_+	MFS transporter	NA	NA	NA	NA	NA
AZY36840.1|786079_787099_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY36841.1|787162_788134_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36842.1|788198_789149_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36843.1|789247_790090_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY36844.1|790089_790425_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY36845.1|790495_791914_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY36846.1|792193_793234_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY36847.1|793313_793565_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY36848.1|793675_794974_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY36849.1|795122_795977_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY36850.1|795973_796864_+	acyltransferase	NA	NA	NA	NA	NA
AZY36851.1|796906_797818_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY36852.1|797844_798537_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY36853.1|798551_799532_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY36854.1|799544_801686_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY36855.1|801734_802703_-	nickel transporter	NA	NA	NA	NA	NA
AZY39641.1|802693_803317_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY36856.1|803322_804258_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36857.1|804254_805151_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY36858.1|805147_805870_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY36859.1|805860_806061_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36860.1|806198_806702_+	transcriptional repressor	NA	NA	NA	NA	NA
AZY36861.1|806978_808094_+	GTP-binding protein	NA	NA	NA	NA	NA
AZY36862.1|808236_808701_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY36863.1|808848_809388_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY36864.1|809409_810744_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY39642.1|810757_811063_-	RND transporter	NA	NA	NA	NA	NA
AZY36865.1|811487_812069_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY36866.1|812150_813101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36867.1|813199_814150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36868.1|814590_815496_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY36869.1|815551_817159_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY36870.1|817412_818918_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY36871.1|818932_819397_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY36872.1|819686_820637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36873.1|820799_821330_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36874.1|821329_821641_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZY36875.1|822085_823036_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1007252	1101289	4104745	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY37015.1|1007252_1008203_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37016.1|1008305_1008968_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37017.1|1009070_1009481_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37018.1|1009585_1010587_+	amidase	NA	NA	NA	NA	NA
AZY37019.1|1010589_1011786_+	CoA transferase	NA	NA	NA	NA	NA
AZY37020.1|1011806_1012610_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY37021.1|1012690_1012987_+	histidine kinase	NA	NA	NA	NA	NA
AZY37022.1|1013017_1013581_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY39656.1|1013621_1014479_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY37023.1|1014486_1015236_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY37024.1|1015257_1016130_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37025.1|1016158_1016938_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY37026.1|1016971_1017769_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37027.1|1019220_1020393_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY37028.1|1020423_1020816_+	RidA family protein	NA	NA	NA	NA	NA
AZY37029.1|1020809_1021670_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY37030.1|1021673_1022636_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY39657.1|1023412_1024102_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY37031.1|1024962_1025913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37032.1|1026262_1027132_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37033.1|1027202_1027898_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY37034.1|1027887_1028397_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY37035.1|1028393_1029614_+	MFS transporter	NA	NA	NA	NA	NA
AZY37036.1|1029561_1030464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37037.1|1031350_1032637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37038.1|1032675_1034049_+	amidase	NA	NA	NA	NA	NA
AZY37039.1|1034087_1034789_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY37040.1|1035087_1036077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37041.1|1036177_1036639_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY37042.1|1036654_1037203_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY37043.1|1037344_1038820_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY37044.1|1038925_1040017_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY37045.1|1040020_1040803_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY37046.1|1040812_1041601_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY37047.1|1042726_1043161_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY37048.1|1043157_1044168_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY37049.1|1044211_1045138_-	VOC family protein	NA	NA	NA	NA	NA
AZY37050.1|1045424_1045793_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY39658.1|1046009_1046960_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39659.1|1046941_1049431_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY37051.1|1049479_1050172_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY37052.1|1050244_1051444_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY37053.1|1051461_1052367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37054.1|1052482_1053412_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY39660.1|1053437_1054784_+	MFS transporter	NA	NA	NA	NA	NA
AZY39661.1|1054811_1055561_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY37055.1|1055574_1056357_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY37056.1|1056549_1057500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37057.1|1057561_1058707_-	porin	NA	NA	NA	NA	NA
AZY37058.1|1059183_1060020_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY37059.1|1060089_1061055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37060.1|1061051_1062002_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37061.1|1061988_1062183_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37062.1|1062387_1062930_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37063.1|1063965_1064916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37064.1|1065157_1065526_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37065.1|1065571_1066696_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39662.1|1067830_1068571_-	oxidoreductase	NA	NA	NA	NA	NA
AZY37066.1|1068674_1069295_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37067.1|1069398_1070349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37068.1|1070345_1072454_-	AsmA family protein	NA	NA	NA	NA	NA
AZY37069.1|1072598_1073258_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY37070.1|1073289_1073754_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY37071.1|1074029_1074215_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37072.1|1074266_1075019_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY37073.1|1075025_1076288_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37074.1|1076329_1077568_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37075.1|1078645_1079773_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY37076.1|1079783_1080611_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY37077.1|1080597_1081464_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY37078.1|1082830_1083235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37079.1|1083326_1084277_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39663.1|1084646_1085558_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37080.1|1085572_1086283_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37081.1|1086279_1087524_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY37082.1|1087525_1087960_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY37083.1|1087988_1088294_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY37084.1|1088187_1088406_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37085.1|1088392_1089343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37086.1|1089399_1090548_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY37087.1|1090628_1091579_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37088.1|1092110_1092908_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37089.1|1092955_1093609_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY37090.1|1093565_1094654_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY37091.1|1094818_1097044_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY37092.1|1099321_1100218_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY37093.1|1100106_1100352_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37094.1|1100338_1101289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1131675	1202647	4104745	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY37124.1|1131675_1132626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37125.1|1132682_1133795_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY37126.1|1136178_1137129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37127.1|1137719_1138496_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY37128.1|1138613_1138877_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY37129.1|1138977_1139982_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY37130.1|1140182_1141784_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY37131.1|1141809_1142568_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY37132.1|1142659_1143316_-	adenylate kinase	NA	NA	NA	NA	NA
AZY37133.1|1143406_1144171_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY37134.1|1144180_1144369_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37135.1|1144424_1145468_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY37136.1|1145464_1145878_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY37137.1|1145874_1146495_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY37138.1|1146775_1147726_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37139.1|1147893_1149285_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY37140.1|1149357_1149936_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY37141.1|1150052_1151450_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY37142.1|1151565_1152771_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY37143.1|1152870_1153389_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY37144.1|1153483_1153729_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY37145.1|1153956_1154271_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY37146.1|1154360_1159550_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY39664.1|1159546_1161715_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY37147.1|1161734_1164086_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY37148.1|1164090_1165410_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY37149.1|1165428_1167102_+	MCE family protein	NA	NA	NA	NA	NA
AZY37150.1|1167106_1167775_+	lipoprotein	NA	NA	NA	NA	NA
AZY37151.1|1167931_1171753_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY37152.1|1172083_1173034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37153.1|1173055_1174201_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37154.1|1174349_1175279_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY37155.1|1175275_1176364_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY37156.1|1176360_1177164_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY37157.1|1177160_1177892_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY37158.1|1177949_1179239_-	MFS transporter	NA	NA	NA	NA	NA
AZY37159.1|1179335_1179938_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37160.1|1184492_1184831_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY37161.1|1185499_1185805_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37162.1|1187511_1188462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37163.1|1188458_1189790_-	MFS transporter	NA	NA	NA	NA	NA
AZY37164.1|1191029_1193051_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY37165.1|1193043_1193685_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY37166.1|1193681_1194089_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY37167.1|1194085_1194886_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY37168.1|1194960_1195665_+	oxidoreductase	NA	NA	NA	NA	NA
AZY37169.1|1195696_1196491_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY37170.1|1196487_1197438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37171.1|1197536_1198487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37172.1|1198585_1199020_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY37173.1|1199102_1201439_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY39665.1|1201630_1202647_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1219881	1276588	4104745	tRNA,transposase	Agrobacterium_phage(20.0%)	43	NA	NA
AZY37188.1|1219881_1220832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37189.1|1220930_1221881_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37190.1|1221983_1222568_+	nitroreductase	NA	NA	NA	NA	NA
AZY39668.1|1222637_1224059_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY37191.1|1224166_1225513_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY37192.1|1225551_1227186_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY37193.1|1227229_1227568_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY37194.1|1227592_1227967_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY37195.1|1231079_1231961_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37196.1|1232068_1233697_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY37197.1|1233738_1235256_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37198.1|1235350_1236295_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY37199.1|1237476_1238379_-	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY37200.1|1238375_1239641_-	peptidase M48	NA	NA	NA	NA	NA
AZY37201.1|1239685_1240231_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY37202.1|1240264_1240951_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY37203.1|1240922_1241852_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY37204.1|1242023_1243013_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY37205.1|1243077_1243362_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY37206.1|1243377_1244142_+	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY39669.1|1244138_1244645_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY37207.1|1245806_1246757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37208.1|1246844_1248497_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY37209.1|1248507_1249296_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY37210.1|1249295_1249766_+	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY37211.1|1249840_1251154_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY37212.1|1251207_1251813_-	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY37213.1|1252129_1253080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37214.1|1253076_1254027_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37215.1|1254013_1254364_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37216.1|1254287_1255316_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY37217.1|1255395_1256694_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY37218.1|1256690_1257272_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY37219.1|1257584_1261631_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY37220.1|1261871_1269533_+	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY37221.1|1269529_1270480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37222.1|1271619_1272093_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37223.1|1272232_1272853_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY37224.1|1272988_1273789_+	aldolase	NA	NA	NA	NA	NA
AZY37225.1|1273843_1274935_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37226.1|1274956_1275400_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY37227.1|1275428_1276061_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY37228.1|1276171_1276588_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 12
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1298583	1360204	4104745	transposase	Klosneuvirus(16.67%)	52	NA	NA
AZY37247.1|1298583_1299534_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37248.1|1299849_1300317_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY37249.1|1300452_1301835_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZY37250.1|1301831_1302956_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY37251.1|1302952_1305589_+	GTP-binding protein	NA	NA	NA	NA	NA
AZY37252.1|1306004_1306955_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37253.1|1310699_1311311_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY37254.1|1311533_1312994_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY37255.1|1313090_1314683_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY37256.1|1314669_1314948_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37257.1|1315006_1315294_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY37258.1|1315295_1316636_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY37259.1|1316731_1317421_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37260.1|1317433_1318864_+	MFS transporter	NA	NA	NA	NA	NA
AZY37261.1|1320588_1321410_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37262.1|1321420_1322992_+	amidohydrolase	NA	NA	NA	NA	NA
AZY37263.1|1323020_1323998_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37264.1|1324024_1324828_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY37265.1|1324824_1325619_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY37266.1|1325626_1326862_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY37267.1|1326854_1327289_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY37268.1|1328038_1328989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37269.1|1329610_1331338_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY37270.1|1331449_1332808_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY37271.1|1332928_1333114_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37272.1|1333100_1334051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37273.1|1334091_1335162_+	FUSC family protein	NA	NA	NA	NA	NA
AZY39671.1|1335184_1336063_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY37274.1|1336234_1337206_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY37275.1|1337368_1338211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37276.1|1338372_1339053_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY37277.1|1339046_1340216_+	amine oxidase	NA	NA	NA	NA	NA
AZY37278.1|1340212_1341244_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY37279.1|1341287_1342529_+	MFS transporter	NA	NA	NA	NA	NA
AZY37280.1|1342563_1344096_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY37281.1|1344176_1344800_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY37282.1|1344830_1345442_+	LysE family translocator	NA	NA	NA	NA	NA
AZY37283.1|1345477_1345948_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY37284.1|1346379_1347384_+	peptidase M20	NA	NA	NA	NA	NA
AZY37285.1|1347420_1348935_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37286.1|1348938_1349898_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY37287.1|1349926_1350730_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY37288.1|1350731_1352366_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY37289.1|1352449_1353511_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY37290.1|1353709_1353979_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37291.1|1353982_1354507_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY37292.1|1354922_1355873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37293.1|1355869_1356940_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY37294.1|1357012_1357651_+	DedA family protein	NA	NA	NA	NA	NA
AZY37295.1|1357945_1358173_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY37296.1|1358295_1359009_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY37297.1|1359253_1360204_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1453446	1505599	4104745	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
AZY37382.1|1453446_1454397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37383.1|1454563_1454917_+	cytochrome C	NA	NA	NA	NA	NA
AZY37384.1|1454929_1455292_+	cytochrome	NA	NA	NA	NA	NA
AZY37385.1|1455333_1455759_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY37386.1|1455961_1457218_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY37387.1|1457416_1458397_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37388.1|1458546_1459788_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AZY37389.1|1459886_1460837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37390.1|1460845_1461541_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY37391.1|1464362_1464962_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY37392.1|1464972_1467138_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY37393.1|1467161_1468946_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY37394.1|1468945_1469035_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY37395.1|1469729_1470002_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY37396.1|1470001_1472068_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY37397.1|1472064_1473015_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37398.1|1473113_1474064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37399.1|1474179_1474512_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY37400.1|1474508_1475195_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY37401.1|1475181_1476141_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY39679.1|1476182_1478543_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY37402.1|1478542_1479175_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY37403.1|1479237_1480617_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY37404.1|1480663_1482019_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY37405.1|1482297_1482546_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37406.1|1482733_1483051_-	virulence factor	NA	NA	NA	NA	NA
AZY37407.1|1483323_1483839_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY37408.1|1483932_1484094_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37409.1|1484109_1484865_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY37410.1|1485203_1485410_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37411.1|1485417_1486077_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY37412.1|1486371_1488576_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY37413.1|1488686_1489910_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY37414.1|1490032_1491007_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY37415.1|1491074_1492268_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY37416.1|1492282_1493083_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY37417.1|1493079_1494936_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY37418.1|1494932_1495538_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY37419.1|1495556_1496942_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY37420.1|1497667_1498894_+	transporter	NA	NA	NA	NA	NA
AZY37421.1|1498982_1499765_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY37422.1|1499863_1500814_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37423.1|1500840_1501614_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY37424.1|1501625_1502867_+	MFS transporter	NA	NA	NA	NA	NA
AZY37425.1|1504648_1505599_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1549524	1608387	4104745	tRNA,protease,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZY39680.1|1549524_1550013_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY37473.1|1550130_1550709_+|protease	protease	protease	NA	NA	NA	NA
AZY37474.1|1550781_1551183_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY37475.1|1551281_1552232_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37476.1|1552238_1553351_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY37477.1|1554037_1555240_+	MFS transporter	NA	NA	NA	NA	NA
AZY37478.1|1555443_1558104_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37479.1|1558116_1561521_+	nuclease	NA	NA	NA	NA	NA
AZY37480.1|1562188_1564414_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY37481.1|1564460_1564787_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY37482.1|1564837_1565446_+	recombination protein RecR	NA	NA	NA	NA	NA
AZY37483.1|1565544_1566495_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37484.1|1566564_1567329_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY37485.1|1567325_1567925_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39681.1|1568028_1568874_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY37486.1|1568939_1569566_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY37487.1|1569562_1570513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37488.1|1570499_1570688_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37489.1|1570611_1571733_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY37490.1|1571713_1572715_-	aminopeptidase	NA	NA	NA	NA	NA
AZY37491.1|1572820_1574332_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY37492.1|1574328_1575633_-	peptidase	NA	NA	NA	NA	NA
AZY37493.1|1575744_1576305_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY37494.1|1576572_1577127_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY37495.1|1577582_1577798_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY39682.1|1578052_1580650_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY37496.1|1580646_1581834_+	cupin	NA	NA	NA	NA	NA
AZY37497.1|1582492_1583107_+	fimbrial protein	NA	NA	NA	NA	NA
AZY37498.1|1583195_1584323_-	lipoprotein	NA	NA	NA	NA	NA
AZY37499.1|1584334_1585240_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY37500.1|1586132_1587083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37501.1|1587264_1588017_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY37502.1|1588085_1588745_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY37503.1|1588741_1589470_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY37504.1|1589482_1591762_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY37505.1|1591786_1591990_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY37506.1|1592031_1592679_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY37507.1|1592799_1593717_-	cytochrome C	NA	NA	NA	NA	NA
AZY37508.1|1593713_1594427_-	cytochrome C	NA	NA	NA	NA	NA
AZY37509.1|1594664_1595435_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY37510.1|1595439_1596039_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY37511.1|1596283_1597774_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZY37512.1|1597832_1598117_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY37513.1|1598113_1598242_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37514.1|1598254_1598410_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37515.1|1598682_1599609_-	YicC family protein	NA	NA	NA	NA	NA
AZY37516.1|1599745_1600486_+	ribonuclease PH	NA	NA	NA	NA	NA
AZY37517.1|1600652_1602029_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY37518.1|1602210_1603116_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY37519.1|1603150_1604890_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY37520.1|1604767_1606570_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY37521.1|1606687_1607338_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY37522.1|1607436_1608387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1653559	1709150	4104745	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZY37553.1|1653559_1654510_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37554.1|1654568_1655342_+	oxidoreductase	NA	NA	NA	NA	NA
AZY37555.1|1655334_1656891_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY37556.1|1656887_1657838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37557.1|1659164_1659767_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37558.1|1660006_1660708_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY37559.1|1660701_1661484_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY37560.1|1661668_1662619_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37561.1|1662717_1663455_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY37562.1|1663644_1664403_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY37563.1|1664449_1665439_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37564.1|1665616_1666585_-	transporter	NA	NA	NA	NA	NA
AZY37565.1|1668124_1669093_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY37566.1|1669101_1670043_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY37567.1|1670516_1671527_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39686.1|1671517_1673032_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY37568.1|1673028_1674375_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39687.1|1674377_1675412_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY37569.1|1675461_1677087_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY37570.1|1677639_1678590_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37571.1|1678694_1679642_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39688.1|1679695_1681510_-	histidine kinase	NA	NA	NA	NA	NA
AZY37572.1|1681502_1682177_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY37573.1|1682306_1685381_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZY37574.1|1685394_1685694_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY37575.1|1686008_1686632_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY37576.1|1686875_1687745_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZY37577.1|1687722_1688667_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39689.1|1688752_1689724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39690.1|1689791_1690565_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY37578.1|1690561_1691758_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY37579.1|1691788_1692739_-	hydrolase	NA	NA	NA	NA	NA
AZY37580.1|1692960_1693650_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY37581.1|1693714_1694470_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY37582.1|1694521_1695514_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37583.1|1695523_1696477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39691.1|1696592_1697555_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37584.1|1698956_1699385_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37585.1|1699381_1700332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39692.1|1700625_1701348_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY37586.1|1701786_1702974_-	MFS transporter	NA	NA	NA	NA	NA
AZY37587.1|1702977_1703358_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37588.1|1705077_1706049_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37589.1|1706062_1706776_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY37590.1|1706780_1707698_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37591.1|1707804_1708101_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37592.1|1708199_1709150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	1941914	2011566	4104745	tRNA,transposase	Staphylococcus_phage(16.67%)	57	NA	NA
AZY37767.1|1941914_1944572_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZY37768.1|1944649_1945852_-	MFS transporter	NA	NA	NA	NA	NA
AZY37769.1|1945848_1946361_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39701.1|1946483_1946822_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY37770.1|1947197_1948148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37771.1|1948246_1949197_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37772.1|1949360_1951256_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY37773.1|1951369_1951537_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY37774.1|1951600_1951837_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY37775.1|1952205_1953405_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY37776.1|1954920_1955871_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37777.1|1956322_1957324_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37778.1|1957496_1958354_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY37779.1|1958350_1959613_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY37780.1|1959713_1960088_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY37781.1|1960136_1961348_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY37782.1|1961432_1962203_+	spermidine synthase	NA	NA	NA	NA	NA
AZY37783.1|1962316_1963081_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39702.1|1963196_1964333_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY37784.1|1964329_1965136_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY37785.1|1966880_1967852_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37786.1|1968008_1968521_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY37787.1|1968679_1969654_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37788.1|1970654_1971449_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY39703.1|1971474_1972281_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY37789.1|1972391_1972982_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY37790.1|1972992_1974171_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37791.1|1974273_1974648_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY37792.1|1974900_1976232_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY37793.1|1976298_1979529_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY37794.1|1981019_1981766_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY37795.1|1981850_1982312_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZY37796.1|1982349_1983408_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY37797.1|1983370_1985200_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZY37798.1|1985239_1985812_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY37799.1|1987236_1988148_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY37800.1|1988376_1989699_+	isocitrate lyase	NA	NA	NA	NA	NA
AZY37801.1|1989744_1990128_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37802.1|1990058_1990694_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37803.1|1990653_1991604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37804.1|1992474_1993347_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY37805.1|1993424_1994564_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37806.1|1994913_1996179_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY37807.1|1996184_1996712_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY37808.1|1996716_1997535_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY37809.1|1997534_1998257_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY37810.1|1998278_1998593_+	ferredoxin	NA	NA	NA	NA	NA
AZY37811.1|1998589_1999759_+	CoA transferase	NA	NA	NA	NA	NA
AZY37812.1|1999789_2000665_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY37813.1|2000661_2001981_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY37814.1|2002053_2003250_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY37815.1|2003260_2004748_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37816.1|2007342_2008242_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37817.1|2008379_2009345_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37818.1|2009443_2010394_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37819.1|2010437_2010629_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37820.1|2010615_2011566_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	2023062	2154123	4104745	tRNA,protease,transposase	Klosneuvirus(18.75%)	116	NA	NA
AZY37832.1|2023062_2024013_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37833.1|2025150_2025447_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37834.1|2025621_2026974_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY39705.1|2027116_2028133_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY39706.1|2030112_2031126_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY37835.1|2031212_2032118_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37836.1|2032274_2032619_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37837.1|2032776_2033235_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY37838.1|2033248_2035465_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY37839.1|2035461_2036523_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37840.1|2036551_2037526_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY37841.1|2037477_2038296_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY37842.1|2038308_2038917_-	peptidase S16	NA	NA	NA	NA	NA
AZY37843.1|2039091_2039487_+	VOC family protein	NA	NA	NA	NA	NA
AZY37844.1|2039505_2040945_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY37845.1|2040973_2041321_+	GFA family protein	NA	NA	NA	NA	NA
AZY37846.1|2041339_2042290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37847.1|2042942_2043893_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37848.1|2043976_2045794_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY37849.1|2045867_2046515_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37850.1|2046527_2047457_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY37851.1|2047626_2048091_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37852.1|2048338_2049019_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37853.1|2049067_2050759_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY37854.1|2050774_2051326_-	ATPase	NA	NA	NA	NA	NA
AZY37855.1|2051322_2051694_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY37856.1|2051806_2052643_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY37857.1|2052653_2053178_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY37858.1|2053275_2053455_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY37859.1|2053584_2054616_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY37860.1|2054689_2055046_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY39707.1|2055035_2055911_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY37861.1|2056009_2056894_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37862.1|2056915_2058211_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY37863.1|2059159_2059810_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZY39708.1|2059897_2061418_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY37864.1|2061675_2063541_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY37865.1|2065460_2065820_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY37866.1|2065807_2067244_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY37867.1|2067240_2067894_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY37868.1|2067890_2069090_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY37869.1|2069187_2070462_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY37870.1|2070458_2071409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37871.1|2071575_2072550_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39709.1|2072546_2072690_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY37872.1|2074311_2074974_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY37873.1|2074976_2075153_+	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY37874.1|2075149_2076088_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY37875.1|2076179_2077670_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY37876.1|2077755_2077908_+	lipoprotein	NA	NA	NA	NA	NA
AZY37877.1|2077921_2078161_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37878.1|2078256_2079000_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY37879.1|2079008_2079533_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY37880.1|2079631_2080555_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY37881.1|2080551_2081313_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY37882.1|2081328_2082414_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZY37883.1|2082426_2082627_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37884.1|2082613_2083564_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37885.1|2083662_2084613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37886.1|2084572_2084986_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY37887.1|2085270_2085570_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39710.1|2085979_2088148_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY37888.1|2088947_2090978_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY37889.1|2090997_2091210_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY37890.1|2091487_2092027_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY37891.1|2092140_2093448_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY37892.1|2093512_2094670_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY37893.1|2094853_2095753_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY37894.1|2095771_2097076_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY37895.1|2097041_2098148_-	GTPase HflX	NA	NA	NA	NA	NA
AZY37896.1|2098235_2098472_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY37897.1|2098610_2099681_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY37898.1|2099684_2101040_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY37899.1|2101066_2102227_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY37900.1|2102229_2102868_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37901.1|2102869_2104174_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY37902.1|2104214_2105510_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY37903.1|2105516_2106023_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY37904.1|2106019_2107168_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY37905.1|2107195_2107621_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY37906.1|2107943_2110826_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY37907.1|2110918_2111674_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY37908.1|2112439_2113789_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY37909.1|2113887_2114838_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37910.1|2114936_2115887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37911.1|2115960_2116434_+	RidA family protein	NA	NA	NA	NA	NA
AZY37912.1|2116459_2117668_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY37913.1|2117664_2118438_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY37914.1|2118437_2119061_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY37915.1|2119226_2119487_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY37916.1|2119790_2120372_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37917.1|2120438_2120693_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY37918.1|2120679_2123304_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY37919.1|2123375_2124194_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37920.1|2124190_2124796_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY37921.1|2124833_2125967_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZY39711.1|2127682_2128057_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37922.1|2128154_2129429_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37923.1|2129432_2131010_-	lipoprotein	NA	NA	NA	NA	NA
AZY37924.1|2131916_2133272_-	amidase	NA	NA	NA	NA	NA
AZY37925.1|2133268_2134903_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY37926.1|2134895_2135726_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY37927.1|2135743_2136688_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY37928.1|2136740_2138315_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37929.1|2138362_2138713_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37930.1|2140185_2141142_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37931.1|2141291_2142629_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY37932.1|2142633_2143890_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY37933.1|2144085_2145132_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY37934.1|2145189_2145558_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY37935.1|2145688_2146561_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY37936.1|2146637_2147540_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37937.1|2148596_2149814_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY37938.1|2151087_2152038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37939.1|2152238_2153048_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY37940.1|2153172_2154123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	2167316	2231088	4104745	tRNA,protease,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
AZY37954.1|2167316_2168267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37955.1|2168837_2169050_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37956.1|2169067_2169799_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37957.1|2169833_2170475_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY37958.1|2170467_2171184_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY37959.1|2173348_2174125_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY37960.1|2174146_2175304_-	thiolase	NA	NA	NA	NA	NA
AZY37961.1|2175300_2175732_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37962.1|2175728_2176532_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY37963.1|2176545_2177001_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY37964.1|2177013_2177985_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY37965.1|2178050_2179274_-	CoA transferase	NA	NA	NA	NA	NA
AZY37966.1|2179501_2180452_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY37967.1|2180575_2183029_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY37968.1|2183217_2184522_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY37969.1|2184626_2185280_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY37970.1|2185282_2186593_-	trigger factor	NA	NA	NA	NA	NA
AZY37971.1|2186771_2187350_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY37972.1|2187461_2187662_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY37973.1|2188007_2188574_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY37974.1|2188657_2188861_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY37975.1|2189167_2189488_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37976.1|2189529_2189811_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37977.1|2189885_2191142_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY37978.1|2191524_2191854_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY37979.1|2193424_2194246_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY37980.1|2194245_2195385_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY37981.1|2195391_2196288_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY37982.1|2196284_2198210_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY37983.1|2198569_2201182_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY37984.1|2201234_2203535_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY37985.1|2203531_2204740_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY37986.1|2205001_2205376_+	hypothetical protein	NA	NA	NA	NA	NA
AZY37987.1|2205372_2206323_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39712.1|2206421_2208416_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY37988.1|2208475_2209441_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY37989.1|2209430_2212292_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY37990.1|2212294_2212801_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY37991.1|2212905_2214114_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY37992.1|2214115_2215054_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37993.1|2215215_2215689_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY37994.1|2215685_2216636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY37995.1|2216622_2216802_-	hypothetical protein	NA	NA	NA	NA	NA
AZY37996.1|2216746_2217187_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY37997.1|2217315_2218545_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY37998.1|2218583_2219405_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY37999.1|2219458_2220610_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY38000.1|2220701_2221190_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY38001.1|2223716_2226290_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY38002.1|2226360_2228934_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY38003.1|2229199_2229400_+	CsbD family protein	NA	NA	NA	NA	NA
AZY38004.1|2229431_2229593_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY38005.1|2229650_2229989_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY38006.1|2230137_2231088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	2540306	2578896	4104745	protease,transposase	Planktothrix_phage(14.29%)	35	NA	NA
AZY38266.1|2540306_2541257_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38267.1|2541435_2543130_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY38268.1|2543126_2544212_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY38269.1|2544259_2545159_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38270.1|2545169_2545814_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY38271.1|2546835_2550078_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY38272.1|2550088_2551186_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY38273.1|2551448_2552432_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY38274.1|2552530_2553481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38275.1|2553579_2554530_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38276.1|2554539_2555229_-	VIT family protein	NA	NA	NA	NA	NA
AZY38277.1|2555288_2555726_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY38278.1|2555771_2556665_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY38279.1|2556712_2557885_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY38280.1|2557881_2559036_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY38281.1|2559232_2559583_-	RnfH family protein	NA	NA	NA	NA	NA
AZY38282.1|2559572_2560007_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY38283.1|2560023_2560974_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38284.1|2561121_2561589_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY38285.1|2561569_2562727_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY38286.1|2562792_2563719_-	paraslipin	NA	NA	NA	NA	NA
AZY38287.1|2563836_2564787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38288.1|2564821_2565247_-	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZY38289.1|2565370_2566090_+	GMP synthase	NA	NA	NA	NA	NA
AZY38290.1|2566157_2568521_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZY38291.1|2568682_2569510_+	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZY38292.1|2569521_2570295_-	RNA methyltransferase	NA	NA	NA	NA	NA
AZY38293.1|2570291_2570897_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZY38294.1|2570883_2572065_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZY38295.1|2572061_2572856_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZY38296.1|2572856_2573312_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZY38297.1|2573383_2574475_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZY39729.1|2574483_2575047_-	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZY38298.1|2575172_2577509_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZY38299.1|2577561_2578896_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 20
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	2607066	2673566	4104745	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY38325.1|2607066_2608017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38326.1|2608386_2608959_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY38327.1|2608961_2609972_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY38328.1|2609964_2610465_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY38329.1|2610475_2610817_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY38330.1|2610828_2611620_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY38331.1|2611636_2611906_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY38332.1|2611928_2612717_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY39732.1|2612763_2613780_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY38333.1|2613996_2615439_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY38334.1|2615617_2617237_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY38335.1|2617357_2619178_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY38336.1|2619256_2620789_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY38337.1|2620822_2622469_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY38338.1|2622538_2623561_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY38339.1|2623578_2624712_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY38340.1|2624714_2625404_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY38341.1|2625403_2626189_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY38342.1|2626232_2626997_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY38343.1|2627035_2628457_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY38344.1|2628522_2629227_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY38345.1|2629274_2629694_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY38346.1|2629706_2630114_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY39733.1|2630297_2631008_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY38347.1|2631134_2631425_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY38348.1|2631442_2631925_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY38349.1|2636430_2637585_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY39734.1|2637890_2638907_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY38350.1|2639153_2639942_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY38351.1|2640008_2640689_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY38352.1|2640685_2641456_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY38353.1|2641554_2642505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZY38354.1|2642560_2643478_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY38355.1|2643488_2644667_-	mandelate racemase	NA	NA	NA	NA	NA
AZY38356.1|2644686_2645682_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY38357.1|2647270_2647879_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY38358.1|2647866_2648907_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY38359.1|2648924_2649887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY38360.1|2649883_2651077_-	CoA transferase	NA	NA	NA	NA	NA
AZY38361.1|2651073_2651871_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY38362.1|2651896_2652883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY38363.1|2652901_2654941_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY39735.1|2655142_2655823_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38364.1|2655836_2656748_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY38365.1|2656744_2657323_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY38366.1|2657461_2658367_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38367.1|2658374_2661794_+	nuclease	NA	NA	NA	NA	NA
AZY38368.1|2661781_2664382_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY38369.1|2665337_2665970_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38370.1|2666363_2667122_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38371.1|2667118_2668321_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY38372.1|2668508_2669459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38373.1|2670366_2671512_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY39736.1|2671531_2672254_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY38374.1|2672370_2672550_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38375.1|2672615_2673566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	2877678	2958958	4104745	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZY38539.1|2877678_2878629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38540.1|2878625_2879528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38541.1|2879615_2880374_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY38542.1|2880386_2881535_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY38543.1|2881575_2883003_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY38544.1|2883232_2884447_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY38545.1|2884492_2887363_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY38546.1|2889773_2890262_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY38547.1|2890387_2893084_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY38548.1|2893238_2895521_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY38549.1|2895688_2896321_+	fimbrial protein	NA	NA	NA	NA	NA
AZY38550.1|2896419_2897370_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY38551.1|2897416_2897971_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY38552.1|2898038_2898884_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY38553.1|2898953_2899922_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY38554.1|2899921_2901718_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38555.1|2903617_2907544_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY38556.1|2907834_2908011_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38557.1|2908279_2911510_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY38558.1|2911791_2912619_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY38559.1|2912652_2913348_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY38560.1|2913340_2914621_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY38561.1|2914630_2915608_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39752.1|2915589_2917290_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZY38562.1|2917392_2918496_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY38563.1|2918526_2919282_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY38564.1|2919288_2920809_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY38565.1|2920851_2921154_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38566.1|2921150_2921783_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38567.1|2921861_2923727_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY38568.1|2923723_2924539_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY38569.1|2924546_2925662_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY38570.1|2926566_2927445_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY38571.1|2927444_2928269_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY38572.1|2928436_2929387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38573.1|2929569_2932449_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY38574.1|2932430_2933207_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY38575.1|2933299_2934763_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY38576.1|2934759_2935131_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY38577.1|2935148_2936462_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38578.1|2936498_2936957_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY38579.1|2937069_2938020_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38580.1|2938016_2939030_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY38581.1|2939169_2940156_+	homoserine kinase	NA	NA	NA	NA	NA
AZY38582.1|2940199_2941000_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38583.1|2941802_2942753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38584.1|2942904_2943507_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38585.1|2943525_2944158_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY38586.1|2944395_2946282_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY38587.1|2946300_2947143_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY38588.1|2947139_2948498_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY38589.1|2948718_2949513_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY38590.1|2949743_2951237_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY38591.1|2951472_2953554_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY38592.1|2953748_2954789_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY38593.1|2954923_2955940_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY38594.1|2955961_2956819_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY39753.1|2956863_2957640_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY38595.1|2958007_2958958_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	2968026	3016964	4104745	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY38603.1|2968026_2968440_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY38604.1|2968480_2968798_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY38605.1|2968882_2969599_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39754.1|2969862_2971284_+	siroheme synthase	NA	NA	NA	NA	NA
AZY38606.1|2971350_2974098_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY39755.1|2974430_2975447_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY39756.1|2975782_2976424_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY38607.1|2976514_2977951_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY38608.1|2978108_2979182_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY38609.1|2979178_2980315_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY38610.1|2980459_2980804_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY38611.1|2980870_2982751_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY38612.1|2982800_2983736_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY39757.1|2984068_2985085_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY38613.1|2986022_2987450_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY38614.1|2987446_2988469_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY38615.1|2988458_2988932_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY38616.1|2989057_2989960_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY38617.1|2989956_2991600_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY39758.1|2991596_2992604_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY39759.1|2993434_2994451_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY38618.1|2994550_2995183_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY38619.1|2995191_2995581_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY38620.1|2995633_2996686_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY38621.1|2997549_2999256_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY38622.1|2999329_2999830_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY38623.1|2999844_3001902_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY38624.1|3001928_3002222_-	response regulator	NA	NA	NA	NA	NA
AZY38625.1|3002323_3003271_-	motility protein MotB	NA	NA	NA	NA	NA
AZY38626.1|3003283_3004159_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY38627.1|3004279_3004840_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY38628.1|3004874_3005198_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY38629.1|3005633_3006371_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY38630.1|3006669_3007620_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38631.1|3007863_3008127_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY38632.1|3008200_3008482_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38633.1|3008498_3009359_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY38634.1|3009355_3009691_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38635.1|3009744_3010395_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY38636.1|3012075_3013020_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38637.1|3013065_3013383_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38638.1|3013385_3014324_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY38639.1|3014501_3014987_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY38640.1|3015005_3015554_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY38641.1|3015830_3016964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	3028571	3101065	4104745	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY38650.1|3028571_3029522_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38651.1|3029564_3030740_+	flagellin FliC	NA	NA	NA	NA	NA
AZY38652.1|3030961_3032752_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY38653.1|3032764_3034426_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY38654.1|3034438_3037144_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY38655.1|3037436_3039191_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY38656.1|3039187_3039814_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY38657.1|3039810_3040662_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY38658.1|3040737_3042852_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY38659.1|3043002_3043653_+	SCO family protein	NA	NA	NA	NA	NA
AZY38660.1|3043798_3044050_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY38661.1|3044119_3045502_-	multidrug transporter	NA	NA	NA	NA	NA
AZY38662.1|3045498_3048678_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY39761.1|3049485_3050403_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38663.1|3050454_3051186_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY38664.1|3051245_3051818_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY39762.1|3053326_3054343_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY38665.1|3054480_3055530_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY38666.1|3055634_3056585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38667.1|3056680_3057406_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY38668.1|3057616_3057997_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY38669.1|3058302_3059175_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY38670.1|3059182_3059563_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38671.1|3059716_3060991_-	radical SAM protein	NA	NA	NA	NA	NA
AZY39763.1|3062478_3063387_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY38672.1|3064184_3065249_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY38673.1|3067085_3068120_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY38674.1|3068309_3068951_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY38675.1|3069033_3070860_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY38676.1|3071103_3072033_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY38677.1|3072032_3072782_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY38678.1|3072853_3073768_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY38679.1|3073787_3074933_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY38680.1|3074993_3075905_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY38681.1|3075985_3076936_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38682.1|3077034_3077619_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY38683.1|3077653_3078643_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY38684.1|3078639_3079581_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY38685.1|3079577_3080798_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY38686.1|3080840_3081155_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY38687.1|3081346_3081706_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY38688.1|3081707_3083438_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY38689.1|3083610_3084282_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY38690.1|3084296_3085625_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY38691.1|3085621_3086521_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY38692.1|3086607_3087693_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY38693.1|3087685_3088819_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY38694.1|3088818_3091500_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY38695.1|3091870_3092452_+	OmpA family protein	NA	NA	NA	NA	NA
AZY38696.1|3092529_3093303_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY38697.1|3093299_3093977_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY38698.1|3094192_3095374_+	MFS transporter	NA	NA	NA	NA	NA
AZY38699.1|3095850_3096108_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38700.1|3096146_3096329_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY38701.1|3096358_3097309_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39764.1|3097438_3097831_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY38702.1|3098107_3099019_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY38703.1|3099143_3100118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY38704.1|3100114_3101065_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	3114572	3168090	4104745	holin,transposase	Bacillus_phage(33.33%)	46	NA	NA
AZY38715.1|3114572_3115523_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38716.1|3115635_3115887_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38717.1|3116080_3116296_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38718.1|3116392_3117511_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY38719.1|3117630_3117843_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38720.1|3118002_3118224_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38721.1|3118276_3119227_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38722.1|3120403_3121774_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY38723.1|3121806_3122598_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38724.1|3122610_3123666_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38725.1|3123691_3124567_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38726.1|3124672_3124921_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38727.1|3124955_3126410_-	carboxylase	NA	NA	NA	NA	NA
AZY38728.1|3126406_3126928_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY38729.1|3126956_3128309_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY38730.1|3128532_3131421_-	HD domain-containing protein	NA	NA	NA	NA	NA
AZY38731.1|3133565_3134867_+	phospholipase	NA	NA	NA	NA	NA
AZY38732.1|3134881_3135598_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY38733.1|3135879_3136560_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY38734.1|3136571_3136739_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38735.1|3136847_3137000_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38736.1|3137087_3137747_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY38737.1|3138127_3139978_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY38738.1|3139974_3140925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38739.1|3142088_3143804_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY38740.1|3143814_3144306_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY38741.1|3144378_3145395_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY38742.1|3145562_3146342_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY38743.1|3146360_3146888_-	lipoprotein	NA	NA	NA	NA	NA
AZY38744.1|3146886_3147093_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38745.1|3147181_3147451_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY38746.1|3147541_3149701_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY38747.1|3149821_3150541_+	lipoprotein	NA	NA	NA	NA	NA
AZY38748.1|3150537_3151488_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38749.1|3151628_3152846_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY38750.1|3152839_3153451_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY38751.1|3154084_3155062_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY38752.1|3155205_3155952_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY38753.1|3155973_3156420_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY38754.1|3157207_3159439_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY38755.1|3159461_3160262_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38756.1|3160543_3161776_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY38757.1|3161886_3162876_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY38758.1|3162906_3164295_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY38759.1|3165893_3166877_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39766.1|3167073_3168090_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	3232548	3305710	4104745	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY38813.1|3232548_3233499_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38814.1|3233495_3234515_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY38815.1|3234524_3237233_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY38816.1|3237380_3238037_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY38817.1|3238135_3239086_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38818.1|3239191_3240127_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY38819.1|3240326_3242021_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY38820.1|3242055_3242982_+	VOC family protein	NA	NA	NA	NA	NA
AZY39769.1|3243050_3244148_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38821.1|3244166_3245030_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY38822.1|3245041_3245824_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY38823.1|3245820_3246939_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY38824.1|3246935_3248468_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY38825.1|3248508_3249516_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY38826.1|3249660_3250383_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38827.1|3250398_3251421_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY38828.1|3251737_3252472_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38829.1|3252556_3254302_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY38830.1|3254298_3255051_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY38831.1|3255095_3256052_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY38832.1|3256140_3256707_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38833.1|3256714_3257575_-	aminotransferase	NA	NA	NA	NA	NA
AZY38834.1|3257604_3258348_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY38835.1|3258364_3259048_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY38836.1|3259885_3260800_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY38837.1|3260864_3261773_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38838.1|3261863_3263288_-	protein CyaE	NA	NA	NA	NA	NA
AZY38839.1|3263289_3264612_-	protein CyaD	NA	NA	NA	NA	NA
AZY38840.1|3264608_3266747_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY38841.1|3266824_3271945_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY39770.1|3272131_3272311_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38842.1|3272393_3272981_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY38843.1|3272996_3274478_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY38844.1|3274532_3276386_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38845.1|3276648_3277986_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY38846.1|3278020_3280018_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY38847.1|3280035_3282084_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY38848.1|3282214_3283081_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY38849.1|3283349_3284315_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY38850.1|3284429_3285578_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY38851.1|3286002_3286314_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY38852.1|3286347_3286608_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY38853.1|3286757_3287891_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY38854.1|3287961_3289098_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY38855.1|3289263_3290058_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY38856.1|3290120_3290564_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY38857.1|3290679_3291630_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38858.1|3291616_3291805_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38859.1|3291752_3292160_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY38860.1|3292232_3294428_+	DNA methylase	NA	NA	NA	NA	NA
AZY38861.1|3294649_3295600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38862.1|3295559_3296084_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY38863.1|3296215_3297187_+	FecR family protein	NA	NA	NA	NA	NA
AZY39771.1|3297306_3299751_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY38864.1|3299766_3300357_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY38865.1|3300600_3301551_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38866.1|3301708_3302974_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY38867.1|3303007_3304105_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY38868.1|3304759_3305710_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	3316997	3418159	4104745	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(13.79%)	110	NA	NA
AZY38879.1|3316997_3317948_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38880.1|3318679_3319057_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY38881.1|3319041_3319743_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38882.1|3319886_3320579_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY38883.1|3320578_3321682_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY38884.1|3321791_3324164_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY38885.1|3324160_3325720_+	chaperone SurA	NA	NA	NA	NA	NA
AZY38886.1|3325744_3326542_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY38887.1|3326573_3327719_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY38888.1|3327823_3329266_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY39772.1|3329268_3330357_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38889.1|3332635_3333586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38890.1|3333572_3333791_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38891.1|3334715_3335273_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY38892.1|3335248_3335599_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38893.1|3335767_3336562_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY38894.1|3336558_3337608_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY38895.1|3337607_3338297_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY38896.1|3338383_3338881_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY38897.1|3338912_3340229_-	protein TolB	NA	NA	NA	NA	NA
AZY38898.1|3340245_3341220_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY38899.1|3341256_3341715_-	protein TolR	NA	NA	NA	NA	NA
AZY38900.1|3341714_3342395_-	protein TolQ	NA	NA	NA	NA	NA
AZY38901.1|3342397_3342826_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY38902.1|3342878_3344609_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY38903.1|3344674_3345247_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY38904.1|3345227_3345914_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY38905.1|3346269_3346941_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY38906.1|3346947_3347148_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38907.1|3347490_3347772_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38908.1|3347768_3348302_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY38909.1|3348283_3348835_-	lysozyme	NA	NA	NA	NA	NA
AZY38910.1|3348813_3349056_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38911.1|3349060_3349873_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38912.1|3349872_3350136_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38913.1|3350354_3350771_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38914.1|3350775_3354732_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY38915.1|3354724_3355114_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY38916.1|3355110_3355644_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY38917.1|3355711_3356071_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38918.1|3356080_3358693_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY38919.1|3358718_3359009_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY38920.1|3359026_3359356_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY38921.1|3359365_3359884_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY38922.1|3360138_3360639_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY38923.1|3360646_3361069_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38924.1|3361065_3361464_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY38925.1|3361460_3361856_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY38926.1|3361855_3362056_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38927.1|3362057_3362540_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY38928.1|3362602_3362854_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38929.1|3362863_3363511_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY38930.1|3363528_3364479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38931.1|3364907_3365510_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY38932.1|3365632_3365875_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY39773.1|3365880_3366936_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY38933.1|3366964_3368383_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY38934.1|3368385_3369663_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY38935.1|3369649_3370099_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY38936.1|3370774_3371725_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38937.1|3371742_3371964_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38938.1|3371978_3372677_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38939.1|3372669_3372990_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39774.1|3373469_3374081_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY38940.1|3374146_3374359_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38941.1|3374610_3375561_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38942.1|3375659_3376733_-	hypothetical protein	NA	NA	NA	NA	NA
AZY38943.1|3376900_3377695_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY38944.1|3377734_3378259_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY38945.1|3378251_3379994_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY38946.1|3380203_3380962_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY38947.1|3380964_3381672_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY38948.1|3381688_3382570_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY38949.1|3382580_3383339_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY39775.1|3383307_3384063_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38950.1|3384132_3385551_+	amidase	NA	NA	NA	NA	NA
AZY38951.1|3385572_3386223_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY38952.1|3386356_3386692_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY38953.1|3386780_3387731_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38954.1|3387807_3389628_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY38955.1|3389632_3390706_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY38956.1|3390828_3391797_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY38957.1|3391870_3392782_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY38958.1|3392800_3393373_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY38959.1|3393453_3394002_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY38960.1|3394001_3395591_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY38961.1|3395660_3395900_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY38962.1|3395940_3396972_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY38963.1|3397031_3398213_-	monooxygenase	NA	NA	NA	NA	NA
AZY38964.1|3398309_3398762_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38965.1|3398771_3400112_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY38966.1|3400428_3401466_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38967.1|3401847_3402207_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39776.1|3402290_3403232_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38968.1|3403306_3404257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38969.1|3404550_3405645_+	porin	NA	NA	NA	NA	NA
AZY38970.1|3405726_3406608_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY38971.1|3406629_3407469_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY38972.1|3407544_3409062_+	peptidase	NA	NA	NA	NA	NA
AZY38973.1|3409158_3410259_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY38974.1|3410275_3410698_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY38975.1|3410720_3410933_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY38976.1|3410979_3411900_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY39777.1|3412163_3412832_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY38977.1|3412834_3413164_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY38978.1|3413370_3414804_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY38979.1|3414815_3415199_-	thioredoxin	NA	NA	NA	NA	NA
AZY38980.1|3415260_3416061_+	hypothetical protein	NA	NA	NA	NA	NA
AZY38981.1|3416159_3417110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY38982.1|3417208_3418159_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	3704774	3837700	4104745	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	118	3749417:3749434	3794057:3794074
AZY39231.1|3704774_3705725_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39232.1|3705721_3706357_-	transporter	NA	NA	NA	NA	NA
AZY39233.1|3706486_3707386_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY39234.1|3707481_3707973_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY39235.1|3708019_3708985_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39236.1|3710118_3711360_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY39237.1|3711473_3712490_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY39238.1|3712524_3713001_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39239.1|3713143_3714052_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY39240.1|3714165_3715278_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY39241.1|3715378_3715912_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY39242.1|3716000_3717251_+	kynureninase	NA	NA	NA	NA	NA
AZY39243.1|3717352_3717865_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY39244.1|3717770_3717977_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39245.1|3717963_3718914_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39246.1|3718979_3719918_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY39247.1|3719940_3720567_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY39248.1|3720563_3721220_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY39249.1|3721216_3721819_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39250.1|3721825_3722452_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY39251.1|3722593_3723163_+	bacterioferritin	NA	NA	NA	NA	NA
AZY39252.1|3723233_3724553_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY39253.1|3724659_3724851_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY39254.1|3725102_3726392_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY39255.1|3726546_3727542_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39256.1|3727626_3728301_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39257.1|3728297_3729248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39258.1|3729234_3729417_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39259.1|3729409_3730651_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY39260.1|3730647_3731592_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY39261.1|3731710_3732661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39262.1|3732620_3733550_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39263.1|3733603_3733939_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY39264.1|3733983_3734748_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY39265.1|3734771_3735512_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39266.1|3735519_3737094_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY39267.1|3737107_3738085_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39268.1|3738357_3738957_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY39269.1|3738990_3745893_-	autotransporter BatB	NA	NA	NA	NA	NA
AZY39270.1|3746339_3746471_-	entericidin	NA	NA	NA	NA	NA
AZY39271.1|3746502_3746664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39272.1|3746736_3746943_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY39273.1|3747947_3748607_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY39274.1|3748634_3749780_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3749417:3749434	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY39275.1|3749920_3750256_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY39276.1|3750330_3751191_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY39277.1|3751454_3752156_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY39278.1|3752325_3752721_+	RidA family protein	NA	NA	NA	NA	NA
AZY39279.1|3752830_3753781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39280.1|3753791_3754433_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39281.1|3754599_3754842_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39282.1|3754940_3755891_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39283.1|3755926_3756394_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY39284.1|3756627_3757005_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39285.1|3757001_3757184_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39286.1|3757187_3758174_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY39287.1|3758170_3758818_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY39288.1|3758875_3759403_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39289.1|3759436_3760624_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY39290.1|3760613_3760976_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY39291.1|3760968_3761088_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39292.1|3761088_3761289_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY39293.1|3761285_3762275_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY39294.1|3763761_3765732_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY39295.1|3765973_3766372_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39296.1|3766380_3767304_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39297.1|3767761_3768712_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39298.1|3768942_3770634_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY39299.1|3770682_3770955_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY39300.1|3770951_3771323_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY39301.1|3771418_3771553_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY39302.1|3771958_3773368_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY39303.1|3773364_3774480_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY39304.1|3774574_3777028_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY39305.1|3777146_3777938_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39306.1|3778057_3779485_+	amidase	NA	NA	NA	NA	NA
AZY39788.1|3779523_3780495_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39307.1|3780913_3782077_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY39308.1|3782164_3783010_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY39309.1|3784566_3785517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39310.1|3786071_3786446_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39311.1|3786520_3787579_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY39312.1|3787602_3788553_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39313.1|3791434_3792604_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY39789.1|3792704_3794312_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3794057:3794074	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY39314.1|3794358_3796380_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY39315.1|3796408_3796654_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY39316.1|3796667_3797858_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY39317.1|3798053_3799019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39318.1|3799041_3800181_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY39319.1|3800392_3801355_+	immunogenic protein	NA	NA	NA	NA	NA
AZY39320.1|3801478_3803503_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY39321.1|3803699_3805943_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AZY39322.1|3806221_3806680_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39323.1|3807607_3810229_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39324.1|3810292_3812920_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY39325.1|3813071_3814136_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY39326.1|3814132_3814906_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY39327.1|3814914_3815748_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY39328.1|3815760_3816540_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY39790.1|3816574_3818047_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY39329.1|3818074_3818833_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY39330.1|3818888_3820739_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY39331.1|3820832_3821309_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY39332.1|3821325_3822246_-	bestrophin	NA	NA	NA	NA	NA
AZY39333.1|3822352_3822853_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZY39334.1|3823226_3823919_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY39335.1|3824227_3825178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39336.1|3825174_3828948_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZY39337.1|3829284_3831174_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZY39338.1|3831185_3832079_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZY39339.1|3832104_3832980_+	thiazole synthase	NA	NA	NA	NA	NA
AZY39340.1|3832976_3833828_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY39341.1|3833889_3834570_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZY39342.1|3834573_3834933_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39343.1|3834933_3835893_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39344.1|3835913_3836402_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZY39791.1|3836683_3837700_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025478	Bordetella pertussis strain E191 chromosome, complete genome	4104745	4003813	4068725	4104745	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY39509.1|4003813_4004299_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39510.1|4004517_4005498_+	protein BugT	NA	NA	NA	NA	NA
AZY39511.1|4005764_4006574_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY39512.1|4006613_4007294_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY39513.1|4007287_4007746_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY39514.1|4007757_4008120_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY39515.1|4008202_4008886_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY39516.1|4008941_4009250_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY39517.1|4009268_4009583_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY39518.1|4009579_4012054_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY39519.1|4012061_4013453_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY39520.1|4013449_4013635_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY39521.1|4013613_4014315_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY39522.1|4014311_4015133_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY39800.1|4015113_4016238_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY39523.1|4016230_4017250_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY39524.1|4017455_4018490_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY39801.1|4018590_4019382_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY39525.1|4019464_4019839_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY39526.1|4019816_4021226_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY39527.1|4021218_4022601_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY39528.1|4022935_4024540_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY39529.1|4024575_4025589_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY39530.1|4025599_4026526_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY39531.1|4026916_4027867_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39532.1|4028036_4029263_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY39533.1|4029462_4030329_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY39534.1|4030321_4031284_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY39535.1|4031384_4032335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39536.1|4032433_4033384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39537.1|4033482_4034433_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY39538.1|4034429_4035923_-	RND transporter	NA	NA	NA	NA	NA
AZY39539.1|4035919_4039027_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY39540.1|4039023_4042092_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY39541.1|4042088_4043339_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY39542.1|4043519_4044281_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY39543.1|4044313_4044964_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY39544.1|4044966_4045806_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY39545.1|4046046_4046790_+	hypothetical protein	NA	NA	NA	NA	NA
AZY39546.1|4046872_4047220_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY39547.1|4047317_4048160_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY39548.1|4048204_4049092_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY39549.1|4049118_4049307_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY39550.1|4049404_4050862_+	MFS transporter	NA	NA	NA	NA	NA
AZY39551.1|4050848_4052375_+	glycerol kinase	NA	NA	NA	NA	NA
AZY39552.1|4052393_4052861_-	hypothetical protein	NA	NA	NA	NA	NA
AZY39553.1|4052860_4053883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY39554.1|4054003_4054744_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY39555.1|4054798_4055899_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY39556.1|4055900_4057091_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY39557.1|4057210_4058227_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY39558.1|4058545_4059217_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY39559.1|4059213_4060122_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY39560.1|4060333_4060981_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY39561.1|4064832_4065909_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY39562.1|4065919_4066729_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY39563.1|4066818_4067592_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY39564.1|4067774_4068725_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
