The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	0	122073	4110608	protease,tRNA,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZY28000.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY28001.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY28002.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY28003.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY28004.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY28005.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY28006.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY28007.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY28008.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY28009.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY28010.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY28011.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY28012.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY28013.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY31396.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY28014.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28015.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY28016.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY28017.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28018.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY28019.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28020.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY28021.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY31397.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28022.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY28023.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY28024.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28025.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY28026.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY28027.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY28028.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY28029.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY28030.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY28031.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY28032.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY28033.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY28034.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28035.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28036.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY28037.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28038.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY28039.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY28040.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28041.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY28042.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY28043.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY28044.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY28045.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY28046.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28047.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28048.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY28049.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY28050.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28051.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28052.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY28053.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY28054.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY28055.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY28056.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28057.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28058.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY28059.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY28060.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY28061.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY28062.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY31398.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28063.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY28064.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31399.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28065.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY28066.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY28067.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY28068.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY28069.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY28070.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY28071.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY28072.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY28073.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY28074.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY31400.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY28075.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY28076.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28077.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY28078.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY28079.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY28080.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY28081.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28082.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY28083.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY28084.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY28085.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY28086.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY28087.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY28088.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY28089.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY28090.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY28091.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28092.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY28093.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY28094.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY28095.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY31401.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY28096.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31402.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY28097.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY28098.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY28099.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28100.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY28101.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY28102.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	164894	225405	4110608	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY28134.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28135.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28136.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZY28137.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY28138.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY28139.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY28140.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31407.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZY28141.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28142.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZY28143.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZY28144.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY28145.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY28146.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28147.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY28148.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY28149.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY28150.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY28151.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZY28152.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY31408.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY28153.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28154.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY28155.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY28156.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28157.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY28158.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY28159.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY28160.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY28161.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY28162.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28163.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZY28164.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28165.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28166.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY28167.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZY28168.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY28169.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZY28170.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY28171.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY28172.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY31409.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28173.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY28174.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY28175.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY28176.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY28177.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY28178.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY28179.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY28180.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY28181.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	233337	286927	4110608	protease,tRNA,transposase	Bacillus_phage(25.0%)	46	NA	NA
AZY28189.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28190.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28191.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28192.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY28193.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY28194.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28195.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28196.1|241550_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28197.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28198.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY28199.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY28200.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY28201.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY28202.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY28203.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY28204.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY28205.1|253600_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31410.1|254381_255626_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY28206.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY28207.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY28208.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
AZY28209.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY28210.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28211.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY28212.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
AZY28213.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28214.1|267085_267631_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28215.1|267714_269334_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY28216.1|269349_270504_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY28217.1|270517_270643_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY28218.1|270639_272391_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY28219.1|272387_274067_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY28220.1|274102_274678_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY28221.1|275820_276099_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY28222.1|277142_278093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28223.1|278371_278533_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY28224.1|278540_278681_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28225.1|279199_279649_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY28226.1|279658_280270_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY28227.1|280428_281283_-	cytochrome c1	NA	NA	NA	NA	NA
AZY28228.1|281302_282685_-	cytochrome b	NA	NA	NA	NA	NA
AZY28229.1|282749_283391_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY28230.1|283530_283989_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY28231.1|284013_284790_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY31411.1|284843_285980_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY28232.1|285976_286927_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	555312	614612	4110608	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY28454.1|555312_556263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28455.1|557586_558363_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY28456.1|558397_560170_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY28457.1|560171_561074_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY28458.1|561198_561558_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY28459.1|561589_562552_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY28460.1|562650_563601_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28461.1|563613_564549_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY28462.1|564608_565448_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY28463.1|565444_566614_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY28464.1|566610_567900_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28465.1|567942_568317_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY28466.1|568422_569160_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY28467.1|569167_569872_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY28468.1|570135_571656_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY28469.1|571711_572275_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY28470.1|572293_573325_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY28471.1|573321_574110_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY28472.1|574285_575275_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28473.1|577031_577982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28474.1|579204_580107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28475.1|580108_580963_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY28476.1|581009_582119_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY28477.1|582129_582648_-	flavin reductase	NA	NA	NA	NA	NA
AZY28478.1|582677_583310_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY28479.1|583381_584041_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY28480.1|584037_585258_-	MFS transporter	NA	NA	NA	NA	NA
AZY28481.1|585526_586399_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY28482.1|586554_587292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28483.1|587294_588890_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY31432.1|589021_590011_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28484.1|590007_590718_+	oxidoreductase	NA	NA	NA	NA	NA
AZY28485.1|590813_591830_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY28486.1|592101_592728_-	aminotransferase	NA	NA	NA	NA	NA
AZY28487.1|592783_593911_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY28488.1|593916_599634_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY28489.1|599917_600133_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28490.1|600201_601146_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY28491.1|601334_602270_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY28492.1|602387_603959_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28493.1|604038_605247_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY28494.1|605744_606662_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY28495.1|609022_609244_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31433.1|609574_610591_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY28496.1|610675_610927_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY28497.1|610930_611746_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY28498.1|611858_612737_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY28499.1|612848_614612_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	620767	674508	4110608	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZY28503.1|620767_621718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28504.1|621786_622785_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28505.1|622789_623470_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY28506.1|623607_624000_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY28507.1|624107_625124_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY28508.1|625363_626149_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY28509.1|626243_627653_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY28510.1|627663_628464_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY28511.1|628484_629255_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY28512.1|629297_629765_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY28513.1|629761_630712_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28514.1|632660_633539_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY28515.1|634465_637444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28516.1|637442_637811_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28517.1|637797_638748_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28518.1|638744_639833_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28519.1|639868_640732_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY28520.1|641871_642261_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY28521.1|642264_643047_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY28522.1|643080_643833_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY28523.1|644141_645281_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28524.1|645277_646069_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY28525.1|646065_646815_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY28526.1|646811_647684_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY28527.1|647683_648685_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY28528.1|648681_649845_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY28529.1|649870_650554_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28530.1|650507_651842_+	CoA ligase	NA	NA	NA	NA	NA
AZY28531.1|651834_652929_+	CoA transferase	NA	NA	NA	NA	NA
AZY31434.1|653695_654646_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28532.1|656586_657846_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28533.1|657842_659381_+	SpoVR family protein	NA	NA	NA	NA	NA
AZY28534.1|659377_660574_-	MFS transporter	NA	NA	NA	NA	NA
AZY28535.1|660570_661962_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY28536.1|661958_662975_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28537.1|663043_664279_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY28538.1|664379_665174_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28539.1|665543_665951_+	GFA family protein	NA	NA	NA	NA	NA
AZY28540.1|666368_666641_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY28541.1|667222_668077_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY28542.1|668177_668480_+	urease subunit gamma	NA	NA	NA	NA	NA
AZY28543.1|668506_669142_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY28544.1|669158_669467_+	urease subunit beta	NA	NA	NA	NA	NA
AZY28545.1|669463_671179_+	urease subunit alpha	NA	NA	NA	NA	NA
AZY28546.1|671181_671799_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY28547.1|671899_672484_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY28548.1|672508_673153_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY28549.1|673557_674508_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	723395	764445	4110608	integrase,tRNA,protease,transposase	Pseudomonas_phage(50.0%)	32	720694:720712	741631:741649
720694:720712	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY28586.1|723395_724043_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY28587.1|724039_724822_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY28588.1|724894_725986_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY28589.1|726265_727393_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY28590.1|727734_728781_+	Fic family protein	NA	NA	NA	NA	NA
AZY31437.1|728791_728932_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY28591.1|728928_732048_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY28592.1|732197_733148_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28593.1|736065_737277_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY28594.1|737273_737474_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28595.1|737460_738411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28596.1|738427_738922_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY28597.1|738925_739183_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28598.1|739207_740638_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY28599.1|740719_741004_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZY28600.1|741787_742738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
741631:741649	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY28601.1|743156_745721_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY28602.1|745765_747619_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28603.1|747951_749523_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY28604.1|750964_751915_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28605.1|752000_752741_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28606.1|752967_753915_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28607.1|755302_756253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28608.1|756239_756428_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28609.1|756446_757262_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28610.1|757394_758834_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY28611.1|758847_759189_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY28612.1|759243_760899_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY28613.1|761050_762061_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28614.1|762193_762967_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28615.1|763310_763508_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28616.1|763494_764445_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	774372	821990	4110608	transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZY28624.1|774372_775323_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28625.1|775461_776214_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY28626.1|776452_778177_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY28627.1|778196_779456_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY28628.1|779470_780565_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY28629.1|780561_782688_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY28630.1|782700_783381_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY31441.1|783658_785032_+	MFS transporter	NA	NA	NA	NA	NA
AZY28631.1|785033_786053_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY28632.1|786116_787088_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28633.1|787152_788103_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28634.1|788201_789044_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY28635.1|789043_789379_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY28636.1|789449_790868_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY28637.1|791147_792188_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY28638.1|792267_792519_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY28639.1|792629_793928_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY28640.1|794076_794931_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY28641.1|794927_795818_+	acyltransferase	NA	NA	NA	NA	NA
AZY28642.1|795860_796772_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY28643.1|796798_797491_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY28644.1|797505_798486_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY28645.1|798498_800640_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY28646.1|800688_801657_-	nickel transporter	NA	NA	NA	NA	NA
AZY31442.1|801647_802271_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY28647.1|802276_803212_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28648.1|803208_804105_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY28649.1|804101_804824_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY28650.1|804814_805015_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28651.1|805152_805656_+	transcriptional repressor	NA	NA	NA	NA	NA
AZY28652.1|805932_807048_+	GTP-binding protein	NA	NA	NA	NA	NA
AZY28653.1|807190_807655_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY28654.1|807802_808342_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY28655.1|808363_809698_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY31443.1|809711_810017_-	RND transporter	NA	NA	NA	NA	NA
AZY28656.1|810441_811023_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY28657.1|811104_812055_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28658.1|812153_813104_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28659.1|813544_814450_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY28660.1|814505_816113_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY28661.1|816366_817872_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY28662.1|817886_818351_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY28663.1|818640_819591_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28664.1|819753_820284_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28665.1|820283_820595_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZY28666.1|821039_821990_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	1006206	1100243	4110608	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY28807.1|1006206_1007157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28808.1|1007259_1007922_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28809.1|1008024_1008435_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28810.1|1008539_1009541_+	amidase	NA	NA	NA	NA	NA
AZY28811.1|1009543_1010740_+	CoA transferase	NA	NA	NA	NA	NA
AZY28812.1|1010760_1011564_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY28813.1|1011644_1011941_+	histidine kinase	NA	NA	NA	NA	NA
AZY28814.1|1011971_1012535_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY31456.1|1012575_1013433_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY28815.1|1013440_1014190_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY28816.1|1014211_1015084_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28817.1|1015112_1015892_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY28818.1|1015925_1016723_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28819.1|1018174_1019347_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY28820.1|1019377_1019770_+	RidA family protein	NA	NA	NA	NA	NA
AZY28821.1|1019763_1020624_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY28822.1|1020627_1021590_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY31457.1|1022366_1023056_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY28823.1|1023916_1024867_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28824.1|1025216_1026086_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28825.1|1026156_1026852_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY28826.1|1026841_1027351_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY28827.1|1027347_1028568_+	MFS transporter	NA	NA	NA	NA	NA
AZY28828.1|1028515_1029418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28829.1|1030304_1031591_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28830.1|1031629_1033003_+	amidase	NA	NA	NA	NA	NA
AZY28831.1|1033041_1033743_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY28832.1|1034041_1035031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28833.1|1035131_1035593_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY28834.1|1035608_1036157_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY28835.1|1036298_1037774_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY28836.1|1037879_1038971_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY28837.1|1038974_1039757_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY28838.1|1039766_1040555_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY28839.1|1041680_1042115_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY28840.1|1042111_1043122_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY28841.1|1043165_1044092_-	VOC family protein	NA	NA	NA	NA	NA
AZY28842.1|1044378_1044747_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY31458.1|1044963_1045914_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31459.1|1045895_1048385_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY28843.1|1048433_1049126_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY28844.1|1049198_1050398_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY28845.1|1050415_1051321_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28846.1|1051436_1052366_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY31460.1|1052391_1053738_+	MFS transporter	NA	NA	NA	NA	NA
AZY31461.1|1053765_1054515_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY28847.1|1054528_1055311_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY28848.1|1055503_1056454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28849.1|1056515_1057661_-	porin	NA	NA	NA	NA	NA
AZY28850.1|1058137_1058974_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY28851.1|1059043_1060009_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28852.1|1060005_1060956_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28853.1|1060942_1061137_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28854.1|1061341_1061884_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28855.1|1062919_1063870_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28856.1|1064111_1064480_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28857.1|1064525_1065650_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31462.1|1066784_1067525_-	oxidoreductase	NA	NA	NA	NA	NA
AZY28858.1|1067628_1068249_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28859.1|1068352_1069303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28860.1|1069299_1071408_-	AsmA family protein	NA	NA	NA	NA	NA
AZY28861.1|1071552_1072212_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY28862.1|1072243_1072708_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY28863.1|1072983_1073169_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28864.1|1073220_1073973_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY28865.1|1073979_1075242_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28866.1|1075283_1076522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28867.1|1077599_1078727_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY28868.1|1078737_1079565_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY28869.1|1079551_1080418_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY28870.1|1081784_1082189_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28871.1|1082280_1083231_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31463.1|1083600_1084512_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY28872.1|1084526_1085237_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28873.1|1085233_1086478_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY28874.1|1086479_1086914_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY28875.1|1086942_1087248_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY28876.1|1087141_1087360_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28877.1|1087346_1088297_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28878.1|1088353_1089502_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY28879.1|1089582_1090533_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28880.1|1091064_1091862_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28881.1|1091909_1092563_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY28882.1|1092519_1093608_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY28883.1|1093772_1095998_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY28884.1|1098275_1099172_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY28885.1|1099060_1099306_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28886.1|1099292_1100243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	1130629	1201601	4110608	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY28916.1|1130629_1131580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28917.1|1131636_1132749_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY28918.1|1135132_1136083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28919.1|1136673_1137450_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY28920.1|1137567_1137831_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY28921.1|1137931_1138936_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY28922.1|1139136_1140738_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY28923.1|1140763_1141522_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY28924.1|1141613_1142270_-	adenylate kinase	NA	NA	NA	NA	NA
AZY28925.1|1142360_1143125_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY28926.1|1143134_1143323_-	hypothetical protein	NA	NA	NA	NA	NA
AZY28927.1|1143378_1144422_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY28928.1|1144418_1144832_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY28929.1|1144828_1145449_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY28930.1|1145729_1146680_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28931.1|1146847_1148239_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY28932.1|1148311_1148890_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY28933.1|1149006_1150404_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY28934.1|1150519_1151725_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY28935.1|1151824_1152343_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY28936.1|1152437_1152683_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY28937.1|1152910_1153225_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY28938.1|1153314_1158504_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY31464.1|1158500_1160669_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY28939.1|1160688_1163040_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY28940.1|1163044_1164364_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY28941.1|1164382_1166056_+	MCE family protein	NA	NA	NA	NA	NA
AZY28942.1|1166060_1166729_+	lipoprotein	NA	NA	NA	NA	NA
AZY28943.1|1166885_1170707_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY28944.1|1171037_1171988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28945.1|1172009_1173155_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY28946.1|1173303_1174233_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY28947.1|1174229_1175318_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY28948.1|1175314_1176118_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY28949.1|1176114_1176846_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY28950.1|1176903_1178193_-	MFS transporter	NA	NA	NA	NA	NA
AZY28951.1|1178289_1178892_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY28952.1|1183446_1183785_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY28953.1|1184453_1184759_+	hypothetical protein	NA	NA	NA	NA	NA
AZY28954.1|1186465_1187416_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28955.1|1187412_1188744_-	MFS transporter	NA	NA	NA	NA	NA
AZY28956.1|1189983_1192005_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY28957.1|1191997_1192639_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY28958.1|1192635_1193043_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY28959.1|1193039_1193840_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY28960.1|1193914_1194619_+	oxidoreductase	NA	NA	NA	NA	NA
AZY28961.1|1194650_1195445_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY28962.1|1195441_1196392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28963.1|1196490_1197441_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY28964.1|1197539_1197974_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY28965.1|1198056_1200393_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY31465.1|1200584_1201601_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	1301821	1359032	4110608	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY29043.1|1301821_1302772_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29044.1|1306518_1307130_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY29045.1|1307352_1308813_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY29046.1|1308909_1310502_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY29047.1|1310488_1310767_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29048.1|1310825_1311113_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY29049.1|1311114_1312455_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY29050.1|1312550_1313240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29051.1|1313252_1314683_+	MFS transporter	NA	NA	NA	NA	NA
AZY29052.1|1316407_1317229_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29053.1|1317239_1318811_+	amidohydrolase	NA	NA	NA	NA	NA
AZY29054.1|1318839_1319817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29055.1|1319843_1320647_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY29056.1|1320643_1321438_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY29057.1|1321445_1322681_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY29058.1|1322673_1323108_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY29059.1|1323857_1324808_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29060.1|1325429_1327157_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY29061.1|1327268_1328627_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY29062.1|1328747_1328933_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29063.1|1328919_1329870_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29064.1|1329910_1330981_+	FUSC family protein	NA	NA	NA	NA	NA
AZY29065.1|1331003_1331882_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY29066.1|1332053_1333025_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY29067.1|1333187_1334030_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29068.1|1334191_1334872_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY29069.1|1334865_1336035_+	amine oxidase	NA	NA	NA	NA	NA
AZY29070.1|1336031_1337063_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY29071.1|1337106_1338348_+	MFS transporter	NA	NA	NA	NA	NA
AZY29072.1|1338382_1339915_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY29073.1|1339995_1340619_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY29074.1|1340649_1341261_+	LysE family translocator	NA	NA	NA	NA	NA
AZY29075.1|1341296_1341767_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY29076.1|1342198_1343203_+	peptidase M20	NA	NA	NA	NA	NA
AZY29077.1|1343239_1344754_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29078.1|1344757_1345717_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY29079.1|1345745_1346549_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY29080.1|1346550_1348185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY29081.1|1348268_1349330_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY29082.1|1349528_1349798_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29083.1|1349801_1350326_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY29084.1|1350741_1351692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29085.1|1351688_1352759_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY29086.1|1352831_1353470_+	DedA family protein	NA	NA	NA	NA	NA
AZY29087.1|1353764_1353992_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY29088.1|1354114_1354828_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY29089.1|1355072_1356023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29090.1|1356126_1356408_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29091.1|1356522_1357971_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY29092.1|1358081_1359032_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	1604304	1675458	4110608	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZY29315.1|1604304_1605255_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29316.1|1605276_1606497_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY29317.1|1606682_1608095_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY29318.1|1608158_1609226_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY29319.1|1609222_1610713_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY31482.1|1610722_1611667_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29320.1|1611826_1612525_+	pirin family protein	NA	NA	NA	NA	NA
AZY29321.1|1612602_1613508_+	pirin family protein	NA	NA	NA	NA	NA
AZY29322.1|1613527_1614478_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29323.1|1614576_1615371_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY29324.1|1615375_1617046_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY29325.1|1617169_1618219_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29326.1|1618540_1619317_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY29327.1|1619381_1620284_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29328.1|1621577_1622381_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY29329.1|1625074_1625461_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY29330.1|1625476_1627567_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZY29331.1|1627618_1628572_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY31483.1|1628586_1629474_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29332.1|1629611_1631138_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY31484.1|1631236_1631737_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY29333.1|1632060_1634016_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY29334.1|1634183_1636268_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29335.1|1636294_1637080_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY29336.1|1637935_1638706_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY29337.1|1638705_1639446_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY29338.1|1639487_1640657_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY29339.1|1640688_1642773_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY29340.1|1642769_1643660_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY29341.1|1643656_1644754_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY29342.1|1644776_1646066_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY29343.1|1646077_1647103_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY29344.1|1647099_1649157_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY29345.1|1649170_1650346_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY29346.1|1650427_1651378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29347.1|1651436_1652210_+	oxidoreductase	NA	NA	NA	NA	NA
AZY29348.1|1652202_1653759_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY29349.1|1653755_1654706_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29350.1|1656032_1656635_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29351.1|1656874_1657576_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY29352.1|1657569_1658352_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY29353.1|1658536_1659487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29354.1|1659585_1660323_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY29355.1|1660512_1661271_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY29356.1|1661317_1662307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY29357.1|1662484_1663453_-	transporter	NA	NA	NA	NA	NA
AZY29358.1|1664992_1665961_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY29359.1|1665969_1666911_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY29360.1|1667384_1668395_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31485.1|1668385_1669900_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY29361.1|1669896_1671243_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31486.1|1671245_1672280_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY29362.1|1672329_1673955_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY29363.1|1674507_1675458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	1696249	1757597	4110608	tRNA,transposase	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZY29377.1|1696249_1697200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31492.1|1697493_1698216_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY29378.1|1698654_1699842_-	MFS transporter	NA	NA	NA	NA	NA
AZY29379.1|1699845_1700226_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29380.1|1701945_1702917_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY29381.1|1702930_1703644_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY29382.1|1703648_1704566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29383.1|1704672_1704969_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29384.1|1705067_1706018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29385.1|1707176_1710110_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY29386.1|1710109_1710454_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY29387.1|1710450_1712079_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY29388.1|1712075_1712555_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY29389.1|1712551_1712836_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY29390.1|1712832_1713159_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZY29391.1|1713314_1714265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29392.1|1714308_1714851_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29393.1|1714948_1715797_+	hydrolase	NA	NA	NA	NA	NA
AZY29394.1|1715789_1716296_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY29395.1|1716292_1717294_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY29396.1|1717306_1718101_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY29397.1|1718149_1720051_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY29398.1|1720047_1720671_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29399.1|1720797_1721922_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29400.1|1722239_1723907_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY29401.1|1724062_1724839_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY29402.1|1724923_1725922_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29403.1|1725918_1726692_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY29404.1|1727676_1728627_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29405.1|1728650_1729115_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY29406.1|1729261_1730470_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY29407.1|1730480_1730951_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY29408.1|1731069_1732359_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY29409.1|1735099_1736050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29410.1|1736148_1737165_-	folate-binding protein	NA	NA	NA	NA	NA
AZY29411.1|1737331_1738378_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY29412.1|1738374_1739001_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY29413.1|1738997_1740050_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY29414.1|1740099_1740870_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY29415.1|1740920_1741757_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29416.1|1741952_1742693_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29417.1|1742767_1743511_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29418.1|1744172_1744946_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY29419.1|1746083_1747373_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY29420.1|1748983_1750231_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY29421.1|1750240_1751950_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY29422.1|1751946_1752885_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY29423.1|1752881_1754165_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY29424.1|1754168_1754651_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY29425.1|1754651_1755638_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29426.1|1755810_1756530_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29427.1|1756646_1757597_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	1938783	2008435	4110608	tRNA,transposase	Staphylococcus_phage(16.67%)	57	NA	NA
AZY29560.1|1938783_1941441_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZY29561.1|1941518_1942721_-	MFS transporter	NA	NA	NA	NA	NA
AZY29562.1|1942717_1943230_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY31500.1|1943352_1943691_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY29563.1|1944066_1945017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29564.1|1945115_1946066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29565.1|1946229_1948125_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY29566.1|1948238_1948406_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY29567.1|1948469_1948706_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY29568.1|1949074_1950274_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY29569.1|1951789_1952740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29570.1|1953191_1954193_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29571.1|1954365_1955223_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY29572.1|1955219_1956482_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY29573.1|1956582_1956957_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY29574.1|1957005_1958217_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY29575.1|1958301_1959072_+	spermidine synthase	NA	NA	NA	NA	NA
AZY29576.1|1959185_1959950_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY31501.1|1960065_1961202_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY29577.1|1961198_1962005_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY29578.1|1963749_1964721_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY29579.1|1964877_1965390_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY29580.1|1965548_1966523_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29581.1|1967523_1968318_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY31502.1|1968343_1969150_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY29582.1|1969260_1969851_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY29583.1|1969861_1971040_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29584.1|1971142_1971517_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY29585.1|1971769_1973101_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY29586.1|1973167_1976398_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY29587.1|1977888_1978635_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY29588.1|1978719_1979181_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZY29589.1|1979218_1980277_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY29590.1|1980239_1982069_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZY29591.1|1982108_1982681_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY29592.1|1984105_1985017_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY29593.1|1985245_1986568_+	isocitrate lyase	NA	NA	NA	NA	NA
AZY29594.1|1986613_1986997_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29595.1|1986927_1987563_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29596.1|1987522_1988473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29597.1|1989343_1990216_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY29598.1|1990293_1991433_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29599.1|1991782_1993048_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY29600.1|1993053_1993581_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY29601.1|1993585_1994404_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY29602.1|1994403_1995126_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY29603.1|1995147_1995462_+	ferredoxin	NA	NA	NA	NA	NA
AZY29604.1|1995458_1996628_+	CoA transferase	NA	NA	NA	NA	NA
AZY29605.1|1996658_1997534_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY29606.1|1997530_1998850_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY29607.1|1998922_2000119_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY29608.1|2000129_2001617_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29609.1|2004211_2005111_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29610.1|2005248_2006214_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY29611.1|2006312_2007263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29612.1|2007306_2007498_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29613.1|2007484_2008435_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	2019931	2069333	4110608	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZY29625.1|2019931_2020882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29626.1|2022025_2022322_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29627.1|2022496_2023849_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY29628.1|2023991_2025008_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY31504.1|2026987_2028001_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY29629.1|2028087_2028993_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29630.1|2029149_2029494_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29631.1|2029651_2030110_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY29632.1|2030123_2032340_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY29633.1|2032336_2033398_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29634.1|2033426_2034401_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY29635.1|2034352_2035171_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY29636.1|2035183_2035792_-	peptidase S16	NA	NA	NA	NA	NA
AZY29637.1|2035966_2036362_+	VOC family protein	NA	NA	NA	NA	NA
AZY29638.1|2036380_2037820_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY29639.1|2037848_2038196_+	GFA family protein	NA	NA	NA	NA	NA
AZY29640.1|2038214_2039165_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29641.1|2039817_2040768_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29642.1|2040851_2042669_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY29643.1|2042742_2043390_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29644.1|2043402_2044332_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY29645.1|2044501_2044966_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29646.1|2045213_2045894_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29647.1|2045942_2047634_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY29648.1|2047649_2048201_-	ATPase	NA	NA	NA	NA	NA
AZY29649.1|2048197_2048569_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY29650.1|2048681_2049518_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY29651.1|2049528_2050053_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY29652.1|2050150_2050330_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY29653.1|2050459_2051491_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY29654.1|2051564_2051921_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY31505.1|2051910_2052786_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY29655.1|2052884_2053769_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29656.1|2053790_2055086_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY29657.1|2056034_2056685_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZY31506.1|2056772_2058293_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY29658.1|2058550_2060416_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY29659.1|2061461_2062412_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29660.1|2063384_2063744_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY29661.1|2063731_2065168_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY29662.1|2065164_2065818_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY29663.1|2065814_2067014_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY29664.1|2067111_2068386_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY29665.1|2068382_2069333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	2080537	2213511	4110608	protease,tRNA,transposase	Klosneuvirus(12.5%)	113	NA	NA
AZY29679.1|2080537_2081488_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29680.1|2081447_2081861_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY29681.1|2082145_2082445_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31508.1|2082854_2085023_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY29682.1|2085822_2087853_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY29683.1|2087872_2088085_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY29684.1|2088362_2088902_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY29685.1|2089015_2090323_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY29686.1|2090387_2091545_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY29687.1|2091728_2092628_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY29688.1|2092646_2093951_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY29689.1|2093916_2095023_-	GTPase HflX	NA	NA	NA	NA	NA
AZY29690.1|2095110_2095347_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY29691.1|2095485_2096556_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY29692.1|2096559_2097915_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY29693.1|2097941_2099102_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY29694.1|2099104_2099743_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29695.1|2099744_2101049_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY29696.1|2101089_2102385_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY29697.1|2102391_2102898_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY29698.1|2102894_2104043_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY29699.1|2104070_2104496_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY29700.1|2104818_2107701_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY29701.1|2107793_2108549_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY29702.1|2109314_2110664_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY29703.1|2110762_2111713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29704.1|2111811_2112762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29705.1|2112835_2113309_+	RidA family protein	NA	NA	NA	NA	NA
AZY29706.1|2113334_2114543_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY29707.1|2114539_2115313_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY29708.1|2115312_2115936_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY29709.1|2116101_2116362_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY29710.1|2116665_2117247_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29711.1|2117313_2117568_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY29712.1|2117554_2120179_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY29713.1|2120250_2121069_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29714.1|2121065_2121671_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY29715.1|2121708_2122842_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZY31509.1|2124557_2124932_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29716.1|2125029_2126304_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29717.1|2126307_2127885_-	lipoprotein	NA	NA	NA	NA	NA
AZY29718.1|2128791_2130147_-	amidase	NA	NA	NA	NA	NA
AZY29719.1|2130143_2131778_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY29720.1|2131770_2132601_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY29721.1|2132618_2133563_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY29722.1|2133615_2135190_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29723.1|2135237_2135588_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29724.1|2137060_2138017_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29725.1|2138166_2139504_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29726.1|2139508_2140765_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY29727.1|2140960_2142007_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY29728.1|2142064_2142433_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY29729.1|2142563_2143436_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY29730.1|2143512_2144415_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29731.1|2145471_2146689_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY29732.1|2147962_2148913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29733.1|2149113_2149923_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY29734.1|2150047_2150998_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29735.1|2150994_2151888_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY29736.1|2152012_2152207_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY29737.1|2152206_2152548_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY29738.1|2152557_2154420_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY29739.1|2154549_2155062_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY29740.1|2155064_2155388_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY29741.1|2155389_2155800_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY29742.1|2155837_2157049_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY29743.1|2157066_2157579_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY29744.1|2157794_2158286_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY29745.1|2158538_2160575_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY29746.1|2160652_2161855_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY29747.1|2161905_2162634_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY29748.1|2164191_2165142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29749.1|2165712_2165925_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29750.1|2165942_2166674_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29751.1|2166708_2167350_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY29752.1|2167342_2168059_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY29753.1|2170223_2171000_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY29754.1|2171021_2172179_-	thiolase	NA	NA	NA	NA	NA
AZY29755.1|2172175_2172607_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29756.1|2172603_2173407_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY29757.1|2173420_2173876_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY29758.1|2173888_2174860_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY29759.1|2174925_2176149_-	CoA transferase	NA	NA	NA	NA	NA
AZY29760.1|2176376_2177327_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29761.1|2177450_2179904_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY29762.1|2180092_2181397_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY29763.1|2181501_2182155_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY29764.1|2182157_2183468_-	trigger factor	NA	NA	NA	NA	NA
AZY29765.1|2183646_2184225_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY29766.1|2184336_2184537_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY29767.1|2184882_2185449_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY29768.1|2185532_2185736_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY29769.1|2186042_2186363_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29770.1|2186404_2186686_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29771.1|2186760_2188017_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY29772.1|2188399_2188729_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY29773.1|2190299_2191121_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY29774.1|2191120_2192260_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY29775.1|2192266_2193163_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY29776.1|2193159_2195085_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY29777.1|2195444_2198057_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY29778.1|2198109_2200410_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY29779.1|2200406_2201615_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY29780.1|2201876_2202251_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29781.1|2202247_2203198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29782.1|2203296_2205291_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY29783.1|2205350_2206316_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY29784.1|2206305_2209167_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY29785.1|2209169_2209676_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY29786.1|2209780_2210989_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY29787.1|2210990_2211929_-	hypothetical protein	NA	NA	NA	NA	NA
AZY29788.1|2212090_2212564_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY29789.1|2212560_2213511_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	2299688	2363266	4110608	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
AZY29867.1|2299688_2300639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29868.1|2300737_2301688_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29869.1|2301989_2302466_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZY29870.1|2303089_2304727_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZY29871.1|2304757_2306071_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZY29872.1|2306204_2306522_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29873.1|2306622_2307945_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29874.1|2307941_2308892_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29875.1|2309421_2310444_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29876.1|2310472_2311303_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZY31518.1|2311319_2313017_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY29877.1|2313081_2314158_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZY29878.1|2314317_2315181_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY29879.1|2315211_2315781_+	phosphohydrolase	NA	NA	NA	NA	NA
AZY29880.1|2315797_2316649_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY29881.1|2317706_2318588_+|protease	protease HtpX	protease	NA	NA	NA	NA
AZY29882.1|2318662_2319652_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZY29883.1|2319714_2320665_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY29884.1|2320727_2321585_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY29885.1|2321644_2322133_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY29886.1|2323681_2324896_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY29887.1|2324892_2326479_+	multidrug resistance protein	NA	NA	NA	NA	NA
AZY29888.1|2326497_2327565_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZY29889.1|2327669_2329214_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZY29890.1|2329633_2331208_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY29891.1|2331315_2332332_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY29892.1|2332328_2333168_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY29893.1|2333172_2334810_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZY29894.1|2334806_2335757_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY29895.1|2335899_2337174_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZY29896.1|2337170_2337494_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY31519.1|2337566_2338580_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZY29897.1|2338599_2339862_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY29898.1|2339864_2340788_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY29899.1|2340784_2342278_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY29900.1|2342288_2343221_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZY29901.1|2343402_2344728_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZY29902.1|2344762_2346118_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZY29903.1|2346178_2347777_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZY29904.1|2347853_2348585_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY29905.1|2348619_2349993_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZY29906.1|2350008_2350920_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZY29907.1|2350910_2351504_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZY29908.1|2351565_2351952_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZY29909.1|2351963_2352434_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZY29910.1|2352445_2353069_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY29911.1|2353089_2355837_-	autotransporter Vag8	NA	NA	NA	NA	NA
AZY29912.1|2362113_2362329_+	hypothetical protein	NA	NA	NA	NA	NA
AZY29913.1|2362315_2363266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	2492408	2558292	4110608	tRNA,protease,transposase	Planktothrix_phage(22.22%)	60	NA	NA
AZY30018.1|2492408_2493896_-|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
AZY30019.1|2493933_2494995_-	siderophore-interacting protein	NA	NA	NA	NA	NA
AZY30020.1|2494991_2495492_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30021.1|2495504_2496104_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AZY30022.1|2496100_2496601_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30023.1|2496602_2497832_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AZY31524.1|2498021_2498261_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AZY30024.1|2498443_2499196_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AZY30025.1|2499197_2500133_-	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AZY30026.1|2500214_2501201_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AZY30027.1|2501200_2502259_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AZY30028.1|2502315_2502498_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AZY31525.1|2502549_2503143_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AZY30029.1|2503251_2503851_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY30030.1|2503847_2504558_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY30031.1|2504559_2505387_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AZY30032.1|2507203_2508445_-	MFS transporter	NA	NA	NA	NA	NA
AZY30033.1|2508456_2509230_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY30034.1|2509256_2510207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30035.1|2510686_2511343_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY30036.1|2511357_2513025_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY30037.1|2513027_2513657_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30038.1|2513868_2514963_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30039.1|2515107_2515920_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY30040.1|2515923_2517627_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY30041.1|2517677_2518808_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY30042.1|2518994_2520071_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY31526.1|2520152_2520803_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY30043.1|2520817_2522251_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY30044.1|2522504_2523323_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30045.1|2523319_2524024_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY30046.1|2524923_2526039_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30047.1|2526072_2526447_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30048.1|2526469_2527627_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY30049.1|2527639_2527873_-	lipoprotein	NA	NA	NA	NA	NA
AZY30050.1|2528507_2531477_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY30051.1|2531491_2531701_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY30052.1|2531852_2532482_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30053.1|2532478_2534596_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY30054.1|2534592_2535273_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY30055.1|2535269_2535830_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY30056.1|2535836_2536934_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY30057.1|2537071_2537680_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY30058.1|2537676_2538969_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY30059.1|2538982_2539525_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY30060.1|2539534_2540371_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY30061.1|2540404_2541466_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY30062.1|2541507_2542560_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY30063.1|2542575_2542878_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30064.1|2543019_2543970_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30065.1|2544148_2545843_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY30066.1|2545839_2546925_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY30067.1|2546972_2547872_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30068.1|2547882_2548527_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY30069.1|2549548_2552791_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY30070.1|2552801_2553899_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY30071.1|2554161_2555145_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY30072.1|2555243_2556194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30073.1|2556292_2557243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30074.1|2557341_2558292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	2610829	2677329	4110608	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY30125.1|2610829_2611780_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30126.1|2612149_2612722_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY30127.1|2612724_2613735_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY30128.1|2613727_2614228_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY30129.1|2614238_2614580_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY30130.1|2614591_2615383_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY30131.1|2615399_2615669_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY30132.1|2615691_2616480_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY30133.1|2616526_2617543_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY30134.1|2617759_2619202_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY30135.1|2619380_2621000_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY30136.1|2621120_2622941_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY30137.1|2623019_2624552_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY30138.1|2624585_2626232_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY30139.1|2626301_2627324_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY30140.1|2627341_2628475_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZY30141.1|2628477_2629167_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY30142.1|2629166_2629952_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY30143.1|2629995_2630760_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY30144.1|2630798_2632220_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY30145.1|2632285_2632990_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY30146.1|2633037_2633457_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY30147.1|2633469_2633877_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY31530.1|2634060_2634771_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY30148.1|2634897_2635188_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY30149.1|2635205_2635688_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY30150.1|2640193_2641348_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY31531.1|2641653_2642670_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY30151.1|2642916_2643705_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30152.1|2643771_2644452_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY30153.1|2644448_2645219_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY30154.1|2645317_2646268_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30155.1|2646323_2647241_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY30156.1|2647251_2648430_-	mandelate racemase	NA	NA	NA	NA	NA
AZY30157.1|2648449_2649445_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY30158.1|2651033_2651642_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY30159.1|2651629_2652670_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY30160.1|2652687_2653650_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY30161.1|2653646_2654840_-	CoA transferase	NA	NA	NA	NA	NA
AZY30162.1|2654836_2655634_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY30163.1|2655659_2656646_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY30164.1|2656664_2658704_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY31532.1|2658905_2659586_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30165.1|2659599_2660511_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY30166.1|2660507_2661086_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY30167.1|2661224_2662130_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30168.1|2662137_2665557_+	nuclease	NA	NA	NA	NA	NA
AZY30169.1|2665544_2668145_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY30170.1|2669100_2669733_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30171.1|2670126_2670885_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30172.1|2670881_2672084_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY30173.1|2672271_2673222_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30174.1|2674129_2675275_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY31533.1|2675294_2676017_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY30175.1|2676133_2676313_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30176.1|2676378_2677329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	2881441	2962720	4110608	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZY30340.1|2881441_2882392_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30341.1|2882388_2883291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30342.1|2883378_2884137_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY30343.1|2884149_2885298_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY30344.1|2885338_2886766_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY30345.1|2886995_2888210_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY30346.1|2888255_2891126_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY30347.1|2893536_2894025_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY30348.1|2894150_2896847_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY30349.1|2897001_2899284_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY30350.1|2899450_2900083_+	fimbrial protein	NA	NA	NA	NA	NA
AZY30351.1|2900181_2901132_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY30352.1|2901178_2901733_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY30353.1|2901800_2902646_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY30354.1|2902715_2903684_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY30355.1|2903683_2905480_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30356.1|2907379_2911306_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY30357.1|2911596_2911773_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30358.1|2912041_2915272_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY30359.1|2915553_2916381_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY30360.1|2916414_2917110_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY30361.1|2917102_2918383_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY30362.1|2918392_2919370_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31549.1|2919351_2921052_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZY30363.1|2921154_2922258_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY30364.1|2922288_2923044_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY30365.1|2923050_2924571_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY30366.1|2924613_2924916_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30367.1|2924912_2925545_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30368.1|2925623_2927489_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY30369.1|2927485_2928301_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY30370.1|2928308_2929424_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30371.1|2930328_2931207_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY30372.1|2931206_2932031_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY30373.1|2932198_2933149_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30374.1|2933331_2936211_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY30375.1|2936192_2936969_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY30376.1|2937061_2938525_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY30377.1|2938521_2938893_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY30378.1|2938910_2940224_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30379.1|2940260_2940719_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY30380.1|2940831_2941782_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30381.1|2941778_2942792_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY30382.1|2942931_2943918_+	homoserine kinase	NA	NA	NA	NA	NA
AZY30383.1|2943961_2944762_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30384.1|2945564_2946515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30385.1|2946666_2947269_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30386.1|2947287_2947920_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY30387.1|2948157_2950044_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY30388.1|2950062_2950905_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY30389.1|2950901_2952260_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY30390.1|2952480_2953275_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY30391.1|2953505_2954999_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY30392.1|2955234_2957316_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY30393.1|2957510_2958551_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY30394.1|2958685_2959702_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY30395.1|2959723_2960581_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY31550.1|2960625_2961402_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY30396.1|2961769_2962720_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	2971788	3020726	4110608	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY30404.1|2971788_2972202_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY30405.1|2972242_2972560_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY30406.1|2972644_2973361_-	hypothetical protein	NA	NA	NA	NA	NA
AZY31551.1|2973624_2975046_+	siroheme synthase	NA	NA	NA	NA	NA
AZY30407.1|2975112_2977860_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY30408.1|2978192_2979209_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY31552.1|2979544_2980186_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY30409.1|2980276_2981713_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY30410.1|2981870_2982944_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY30411.1|2982940_2984077_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY30412.1|2984221_2984566_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY30413.1|2984632_2986513_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY30414.1|2986562_2987498_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY31553.1|2987830_2988847_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY30415.1|2989784_2991212_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY30416.1|2991208_2992231_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY30417.1|2992220_2992694_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY30418.1|2992819_2993722_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZY30419.1|2993718_2995362_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY31554.1|2995358_2996366_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY31555.1|2997196_2998213_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY30420.1|2998312_2998945_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY30421.1|2998953_2999343_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY30422.1|2999395_3000448_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY30423.1|3001311_3003018_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY30424.1|3003091_3003592_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY30425.1|3003606_3005664_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY30426.1|3005690_3005984_-	response regulator	NA	NA	NA	NA	NA
AZY30427.1|3006085_3007033_-	motility protein MotB	NA	NA	NA	NA	NA
AZY30428.1|3007045_3007921_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY30429.1|3008041_3008602_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY30430.1|3008636_3008960_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY30431.1|3009395_3010133_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY30432.1|3010431_3011382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30433.1|3011625_3011889_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY30434.1|3011962_3012244_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30435.1|3012260_3013121_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY30436.1|3013117_3013453_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30437.1|3013506_3014157_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY30438.1|3015837_3016782_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30439.1|3016827_3017145_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30440.1|3017147_3018086_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY30441.1|3018263_3018749_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY30442.1|3018767_3019316_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY30443.1|3019592_3020726_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	3032333	3104827	4110608	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY30452.1|3032333_3033284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30453.1|3033326_3034502_+	flagellin FliC	NA	NA	NA	NA	NA
AZY30454.1|3034723_3036514_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY30455.1|3036526_3038188_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY30456.1|3038200_3040906_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY30457.1|3041198_3042953_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY30458.1|3042949_3043576_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY30459.1|3043572_3044424_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY30460.1|3044499_3046614_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY30461.1|3046764_3047415_+	SCO family protein	NA	NA	NA	NA	NA
AZY30462.1|3047560_3047812_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY30463.1|3047881_3049264_-	multidrug transporter	NA	NA	NA	NA	NA
AZY30464.1|3049260_3052440_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY31557.1|3053247_3054165_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30465.1|3054216_3054948_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY30466.1|3055007_3055580_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY31558.1|3057088_3058105_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY30467.1|3058242_3059292_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY30468.1|3059396_3060347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30469.1|3060442_3061168_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY30470.1|3061378_3061759_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY30471.1|3062064_3062937_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY30472.1|3062944_3063325_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30473.1|3063478_3064753_-	radical SAM protein	NA	NA	NA	NA	NA
AZY31559.1|3066240_3067149_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY30474.1|3067946_3069011_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY30475.1|3070847_3071882_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30476.1|3072071_3072713_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY30477.1|3072795_3074622_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY30478.1|3074865_3075795_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY30479.1|3075794_3076544_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY30480.1|3076615_3077530_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY30481.1|3077549_3078695_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY30482.1|3078755_3079667_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY30483.1|3079747_3080698_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30484.1|3080796_3081381_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY30485.1|3081415_3082405_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY30486.1|3082401_3083343_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY30487.1|3083339_3084560_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY30488.1|3084602_3084917_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY30489.1|3085108_3085468_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY30490.1|3085469_3087200_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY30491.1|3087372_3088044_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY30492.1|3088058_3089387_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY30493.1|3089383_3090283_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY30494.1|3090369_3091455_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY30495.1|3091447_3092581_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY30496.1|3092580_3095262_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY30497.1|3095632_3096214_+	OmpA family protein	NA	NA	NA	NA	NA
AZY30498.1|3096291_3097065_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY30499.1|3097061_3097739_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY30500.1|3097954_3099136_+	MFS transporter	NA	NA	NA	NA	NA
AZY30501.1|3099612_3099870_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30502.1|3099908_3100091_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY30503.1|3100120_3101071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31560.1|3101200_3101593_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY30504.1|3101869_3102781_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY30505.1|3102905_3103880_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY30506.1|3103876_3104827_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	3118334	3171852	4110608	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZY30517.1|3118334_3119285_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30518.1|3119397_3119649_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30519.1|3119842_3120058_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30520.1|3120154_3121273_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY30521.1|3121392_3121605_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30522.1|3121764_3121986_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30523.1|3122038_3122989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30524.1|3124165_3125536_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY30525.1|3125568_3126360_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30526.1|3126372_3127428_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30527.1|3127453_3128329_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30528.1|3128434_3128683_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30529.1|3128717_3130172_-	carboxylase	NA	NA	NA	NA	NA
AZY30530.1|3130168_3130690_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY30531.1|3130718_3132071_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY30532.1|3132294_3135183_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY30533.1|3137327_3138629_+	phospholipase	NA	NA	NA	NA	NA
AZY30534.1|3138643_3139360_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY30535.1|3139641_3140322_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY30536.1|3140333_3140501_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30537.1|3140609_3140762_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30538.1|3140849_3141509_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY30539.1|3141889_3143740_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY30540.1|3143736_3144687_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30541.1|3145850_3147566_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY30542.1|3147576_3148068_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY30543.1|3148140_3149157_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY30544.1|3149324_3150104_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY30545.1|3150122_3150650_-	lipoprotein	NA	NA	NA	NA	NA
AZY30546.1|3150648_3150855_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30547.1|3150943_3151213_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY30548.1|3151303_3153463_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY30549.1|3153583_3154303_+	lipoprotein	NA	NA	NA	NA	NA
AZY30550.1|3154299_3155250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30551.1|3155390_3156608_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY30552.1|3156601_3157213_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY30553.1|3157846_3158824_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY30554.1|3158967_3159714_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY30555.1|3159735_3160182_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY30556.1|3160969_3163201_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY30557.1|3163223_3164024_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30558.1|3164305_3165538_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY30559.1|3165648_3166638_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY30560.1|3166668_3168057_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY30561.1|3169655_3170639_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY31562.1|3170835_3171852_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	3236310	3306362	4110608	transposase	Klosneuvirus(16.67%)	57	NA	NA
AZY30615.1|3236310_3237261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30616.1|3237257_3238277_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY30617.1|3238286_3240995_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY30618.1|3241142_3241799_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY30619.1|3241897_3242848_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30620.1|3242953_3243889_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY30621.1|3244088_3245783_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY30622.1|3245817_3246744_+	VOC family protein	NA	NA	NA	NA	NA
AZY31565.1|3246812_3247910_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30623.1|3247928_3248792_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY30624.1|3248803_3249586_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY30625.1|3249582_3250701_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY30626.1|3250697_3252230_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY30627.1|3252270_3253278_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY30628.1|3253422_3254145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30629.1|3254160_3255183_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY30630.1|3255499_3256234_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30631.1|3256318_3258064_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY30632.1|3258060_3258813_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY30633.1|3258857_3259814_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY30634.1|3259902_3260469_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30635.1|3260476_3261337_-	aminotransferase	NA	NA	NA	NA	NA
AZY30636.1|3261366_3262110_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY30637.1|3262126_3262810_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY30638.1|3263647_3264562_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30639.1|3264626_3265535_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30640.1|3265625_3267050_-	protein CyaE	NA	NA	NA	NA	NA
AZY30641.1|3267051_3268374_-	protein CyaD	NA	NA	NA	NA	NA
AZY30642.1|3268370_3270509_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY30643.1|3270586_3275707_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY31566.1|3275893_3276073_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30644.1|3276155_3276743_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY30645.1|3276758_3278240_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY30646.1|3278294_3280148_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30647.1|3280410_3281748_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY30648.1|3281782_3283780_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY30649.1|3283797_3285846_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY30650.1|3285976_3286843_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY30651.1|3287111_3288077_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY30652.1|3288191_3289340_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY30653.1|3289764_3290076_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY30654.1|3290109_3290370_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY30655.1|3290519_3291653_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY30656.1|3291723_3292860_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY30657.1|3293025_3293820_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY30658.1|3293882_3294326_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY30659.1|3294441_3295392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30660.1|3295378_3295567_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30661.1|3295514_3295922_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY30662.1|3295994_3298190_+	DNA methylase	NA	NA	NA	NA	NA
AZY30663.1|3298411_3299362_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30664.1|3299460_3300411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30665.1|3300370_3300895_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY30666.1|3301026_3301998_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31567.1|3302117_3304562_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY30667.1|3304577_3305168_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY30668.1|3305411_3306362_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	3321810	3422972	4110608	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(13.79%)	110	NA	NA
AZY30681.1|3321810_3322761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30682.1|3322859_3323810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30683.1|3324541_3324919_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY30684.1|3324903_3325605_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30685.1|3325748_3326441_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY30686.1|3326440_3327544_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY30687.1|3327653_3330026_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY30688.1|3330022_3331582_+	chaperone SurA	NA	NA	NA	NA	NA
AZY30689.1|3331606_3332404_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY30690.1|3332435_3333581_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY30691.1|3333685_3335128_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY31568.1|3335130_3336219_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30692.1|3338497_3339448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30693.1|3339434_3339653_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30694.1|3340577_3341135_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY30695.1|3341110_3341461_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30696.1|3341629_3342424_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY30697.1|3342420_3343470_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY30698.1|3343469_3344159_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY30699.1|3344245_3344743_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY30700.1|3344774_3346091_-	protein TolB	NA	NA	NA	NA	NA
AZY30701.1|3346107_3347082_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY30702.1|3347118_3347577_-	protein TolR	NA	NA	NA	NA	NA
AZY30703.1|3347576_3348257_-	protein TolQ	NA	NA	NA	NA	NA
AZY30704.1|3348259_3348688_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY30705.1|3348740_3350471_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY30706.1|3350536_3351109_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY30707.1|3351089_3351776_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY30708.1|3352131_3352803_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY30709.1|3352809_3353010_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30710.1|3353352_3353634_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30711.1|3353630_3354164_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY30712.1|3354145_3354697_-	lysozyme	NA	NA	NA	NA	NA
AZY30713.1|3354675_3354918_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30714.1|3354922_3355735_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30715.1|3355734_3355998_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30716.1|3356216_3356633_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30717.1|3356637_3360594_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY30718.1|3360586_3360976_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY30719.1|3360972_3361506_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY30720.1|3361573_3361933_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30721.1|3361942_3364555_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY30722.1|3364580_3364871_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY30723.1|3364888_3365218_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY30724.1|3365227_3365746_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY30725.1|3366000_3366501_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY30726.1|3366508_3366931_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30727.1|3366927_3367326_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY30728.1|3367322_3367718_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY30729.1|3367717_3367918_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30730.1|3367919_3368402_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY30731.1|3368464_3368716_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30732.1|3368725_3369373_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY30733.1|3369390_3370341_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30734.1|3370769_3371372_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY30735.1|3371494_3371737_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY31569.1|3371742_3372798_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY30736.1|3372826_3374245_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY30737.1|3374247_3375525_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY30738.1|3375511_3375961_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY30739.1|3376636_3377587_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30740.1|3377604_3377826_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30741.1|3377840_3378539_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30742.1|3378531_3378852_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31570.1|3379331_3379943_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY30743.1|3380008_3380221_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30744.1|3380472_3381423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30745.1|3381521_3382595_-	hypothetical protein	NA	NA	NA	NA	NA
AZY30746.1|3382762_3383557_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY30747.1|3383596_3384121_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY30748.1|3384113_3385856_-	sulfite reductase	NA	NA	NA	NA	NA
AZY30749.1|3386065_3386824_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY30750.1|3386826_3387534_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY30751.1|3387550_3388432_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY30752.1|3388442_3389201_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY31571.1|3389169_3389925_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30753.1|3389994_3391413_+	amidase	NA	NA	NA	NA	NA
AZY30754.1|3391434_3392085_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY30755.1|3392218_3392554_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY30756.1|3392642_3393593_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30757.1|3393669_3395490_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY30758.1|3395494_3396568_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY30759.1|3396690_3397659_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY30760.1|3397732_3398644_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY30761.1|3398662_3399235_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY30762.1|3399315_3399864_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY30763.1|3399863_3401453_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY30764.1|3401522_3401762_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY30765.1|3401802_3402834_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY30766.1|3402893_3404075_-	monooxygenase	NA	NA	NA	NA	NA
AZY30767.1|3404171_3404624_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30768.1|3404633_3405974_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY30769.1|3406290_3407328_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30770.1|3407709_3408069_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31572.1|3408152_3409094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30771.1|3409168_3410119_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY30772.1|3410412_3411507_+	porin	NA	NA	NA	NA	NA
AZY30773.1|3411588_3412470_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY30774.1|3412491_3413331_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY30775.1|3413406_3414924_+	peptidase	NA	NA	NA	NA	NA
AZY30776.1|3415020_3416121_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY30777.1|3416137_3416560_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY30778.1|3416582_3416795_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY30779.1|3416841_3417762_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY31573.1|3418025_3418694_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY30780.1|3418696_3419026_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY30781.1|3419232_3420666_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY30782.1|3420677_3421061_-	thioredoxin	NA	NA	NA	NA	NA
AZY30783.1|3421122_3421923_+	hypothetical protein	NA	NA	NA	NA	NA
AZY30784.1|3422021_3422972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025388	Bordetella pertussis strain G102 chromosome, complete genome	4110608	4009676	4074588	4110608	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY31312.1|4009676_4010162_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31313.1|4010380_4011361_+	protein BugT	NA	NA	NA	NA	NA
AZY31314.1|4011627_4012437_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY31315.1|4012476_4013157_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY31316.1|4013150_4013609_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY31317.1|4013620_4013983_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY31318.1|4014065_4014749_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY31319.1|4014804_4015113_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY31320.1|4015131_4015446_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY31321.1|4015442_4017917_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY31322.1|4017924_4019316_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY31323.1|4019312_4019498_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY31324.1|4019476_4020178_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY31325.1|4020174_4020996_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY31596.1|4020976_4022101_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY31326.1|4022093_4023113_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY31327.1|4023318_4024353_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY31597.1|4024453_4025245_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY31328.1|4025327_4025702_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY31329.1|4025679_4027089_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY31330.1|4027081_4028464_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY31331.1|4028798_4030403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY31332.1|4030438_4031452_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY31333.1|4031462_4032389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY31334.1|4032779_4033730_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31335.1|4033899_4035126_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY31336.1|4035325_4036192_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY31337.1|4036184_4037147_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY31338.1|4037247_4038198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31339.1|4038296_4039247_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31340.1|4039345_4040296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY31341.1|4040292_4041786_-	RND transporter	NA	NA	NA	NA	NA
AZY31342.1|4041782_4044890_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY31343.1|4044886_4047955_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY31344.1|4047951_4049202_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY31345.1|4049382_4050144_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY31346.1|4050176_4050827_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY31347.1|4050829_4051669_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY31348.1|4051909_4052653_+	hypothetical protein	NA	NA	NA	NA	NA
AZY31349.1|4052735_4053083_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY31350.1|4053180_4054023_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY31351.1|4054067_4054955_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY31352.1|4054981_4055170_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY31353.1|4055267_4056725_+	MFS transporter	NA	NA	NA	NA	NA
AZY31354.1|4056711_4058238_+	glycerol kinase	NA	NA	NA	NA	NA
AZY31355.1|4058256_4058724_-	hypothetical protein	NA	NA	NA	NA	NA
AZY31356.1|4058723_4059746_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY31357.1|4059866_4060607_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY31358.1|4060661_4061762_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY31359.1|4061763_4062954_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY31360.1|4063073_4064090_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY31361.1|4064408_4065080_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY31362.1|4065076_4065985_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY31363.1|4066196_4066844_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY31364.1|4070695_4071772_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY31365.1|4071782_4072592_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY31366.1|4072681_4073455_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY31367.1|4073637_4074588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
