The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	0	122073	4104293	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZY10058.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY10059.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY10060.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY10061.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY10062.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY10063.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY10064.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY10065.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY10066.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY10067.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY10068.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY10069.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY10070.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY10071.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY13454.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY10072.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10073.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY10074.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY10075.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10076.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY10077.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10078.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY10079.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY13455.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10080.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY10081.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY10082.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10083.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY10084.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY10085.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY10086.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY10087.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY10088.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY10089.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY10090.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY10091.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY10092.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10093.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10094.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY10095.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10096.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY10097.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY10098.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10099.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY10100.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY10101.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY10102.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY10103.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY10104.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY10105.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10106.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY10107.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY10108.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10109.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10110.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY10111.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY10112.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY10113.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY10114.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10115.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10116.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY10117.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY10118.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY10119.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY10120.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13456.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10121.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY10122.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13457.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10123.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY10124.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY10125.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY10126.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY10127.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY10128.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY10129.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY10130.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY10131.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY10132.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY10133.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY10134.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY10135.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10136.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY10137.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY10138.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY10139.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY10140.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10141.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY10142.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY10143.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY10144.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY10145.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY10146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY10147.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY10148.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY10149.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY10150.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10151.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY10152.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY10153.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY10154.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY13458.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY10155.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10156.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY10157.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY10158.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY10159.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY10160.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY10161.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY10162.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	164892	225403	4104293	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY10194.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10195.1|167286_168189_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10196.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
AZY10197.1|169126_170509_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY10198.1|170542_171172_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY10199.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY10200.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13463.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
AZY10201.1|174300_175251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10202.1|176366_176894_+	lipoprotein	NA	NA	NA	NA	NA
AZY10203.1|176985_177801_+	lipoprotein	NA	NA	NA	NA	NA
AZY10204.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY10205.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY10206.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10207.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY10208.1|182424_184329_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY10209.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY10210.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY10211.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AZY10212.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY13464.1|189529_189976_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY10213.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10214.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY10215.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY10216.1|194404_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10217.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY10218.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY10219.1|197377_198478_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY10220.1|198559_198934_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY10221.1|198993_201858_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY10222.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10223.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
AZY10224.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10225.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10226.1|206741_207065_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY10227.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
AZY10228.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY10229.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
AZY10230.1|209362_209638_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY10231.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY10232.1|210338_211025_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY13465.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10233.1|212056_212782_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY10234.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY10235.1|214274_215207_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY10236.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY10237.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY10238.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY10239.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY10240.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY10241.1|224452_225403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	233335	286922	4104293	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
AZY10249.1|233335_234286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10250.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10251.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10252.1|236368_237166_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY10253.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY10254.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10255.1|240334_241378_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY10256.1|241548_243651_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10257.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10258.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY10259.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY10260.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY10261.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY10262.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY10263.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY10264.1|251622_253512_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY10265.1|253598_254237_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13466.1|254379_255624_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY10266.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY10267.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY10268.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
AZY10269.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY10270.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10271.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY10272.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
AZY10273.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10274.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10275.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY10276.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY10277.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY10278.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY10279.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY10280.1|274098_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY10281.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY10282.1|277138_278089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10283.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10284.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY10285.1|278535_278676_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10286.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY10287.1|279653_280265_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY10288.1|280423_281278_-	cytochrome c1	NA	NA	NA	NA	NA
AZY10289.1|281297_282680_-	cytochrome b	NA	NA	NA	NA	NA
AZY10290.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY10291.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY10292.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY13467.1|284838_285975_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY10293.1|285971_286922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	390855	448364	4104293	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY10392.1|390855_391806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10393.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
AZY10394.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY10395.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
AZY10396.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10397.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
AZY10398.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10399.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13473.1|400016_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY10400.1|401155_402139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10401.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10402.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY10403.1|403582_404824_-	CoA transferase	NA	NA	NA	NA	NA
AZY10404.1|404928_406635_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY10405.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10406.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY10407.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10408.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13474.1|411328_412306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10409.1|412384_413335_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10410.1|413423_414338_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY10411.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
AZY10412.1|415083_416007_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY10413.1|416012_416468_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10414.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY13475.1|417487_417796_+	GtrA family protein	NA	NA	NA	NA	NA
AZY10415.1|417755_419375_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY10416.1|419371_420430_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY10417.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY10418.1|421146_422124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10419.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY10420.1|423521_425033_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY13476.1|425048_426362_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY10421.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10422.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY10423.1|430320_431271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10424.1|431402_431801_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY10425.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
AZY10426.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY10427.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY10428.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY10429.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY10430.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
AZY10431.1|439208_439994_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY10432.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10433.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10434.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY10435.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY10436.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY10437.1|447413_448364_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	620800	721263	4104293	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(13.79%)	110	NA	NA
AZY10589.1|620800_621751_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10590.1|622449_622833_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10591.1|622890_623493_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY13482.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
AZY10592.1|624045_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10593.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY10594.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
AZY10595.1|627086_628136_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY10596.1|628283_628862_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY10597.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY10598.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY10599.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10600.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY10601.1|636789_637740_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10602.1|637838_638639_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10603.1|638700_639084_+	thioredoxin	NA	NA	NA	NA	NA
AZY10604.1|639095_640529_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY10605.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY13483.1|641067_641736_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY10606.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY10607.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY10608.1|643201_643624_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY10609.1|643640_644741_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY10610.1|644837_646355_-	peptidase	NA	NA	NA	NA	NA
AZY10611.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY10612.1|647291_648173_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY10613.1|648254_649349_-	porin	NA	NA	NA	NA	NA
AZY10614.1|649642_650593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13484.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10615.1|651692_652052_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10616.1|652433_653471_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10617.1|653787_655128_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY10618.1|655137_655590_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10619.1|655686_656868_+	monooxygenase	NA	NA	NA	NA	NA
AZY10620.1|656927_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY10621.1|657999_658239_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY10622.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY10623.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY10624.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY10625.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY10626.1|662102_663071_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY10627.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY10628.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY10629.1|666168_667119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10630.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY10631.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY10632.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
AZY10633.1|669836_670592_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13485.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY10634.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY10635.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY10636.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY10637.1|673905_675648_+	sulfite reductase	NA	NA	NA	NA	NA
AZY10638.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY10639.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY10640.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10641.1|678338_679289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10642.1|679540_679753_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13486.1|679818_680430_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY10643.1|680909_681230_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10644.1|681222_681921_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10645.1|681935_682157_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10646.1|682174_683125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13487.1|683800_684250_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY10647.1|684236_685514_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY10648.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY13488.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY10649.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY10650.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY10651.1|689420_690371_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10652.1|690388_691036_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY10653.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10654.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY10655.1|691843_692044_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10656.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY10657.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY10658.1|692830_693253_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10659.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY10660.1|694015_694534_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY10661.1|694543_694873_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY10662.1|694890_695181_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY10663.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY10664.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10665.1|698255_698789_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY10666.1|698785_699175_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY10667.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY10668.1|703128_703545_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10669.1|703763_704027_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY10670.1|704026_704839_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10671.1|704843_705086_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10672.1|705064_705616_+	lysozyme	NA	NA	NA	NA	NA
AZY10673.1|705597_706131_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY10674.1|706127_706409_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10675.1|706751_706952_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10676.1|706958_707630_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY10677.1|707985_708672_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY10678.1|708652_709225_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY10679.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY10680.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY10681.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
AZY10682.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
AZY10683.1|713669_714986_+	protein TolB	NA	NA	NA	NA	NA
AZY10684.1|715017_715515_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY10685.1|715601_716291_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY10686.1|716290_717340_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY10687.1|717336_718131_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY10688.1|718299_718650_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10689.1|718625_719183_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10690.1|720107_720326_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10691.1|720312_721263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	748188	821350	4104293	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY10712.1|748188_749139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10713.1|749793_750891_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY10714.1|750924_752190_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY10715.1|752347_753298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10716.1|753541_754132_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY13490.1|754147_756592_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY10717.1|756711_757683_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10718.1|757814_758339_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY10719.1|758298_759249_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10720.1|759470_761666_-	DNA methylase	NA	NA	NA	NA	NA
AZY10721.1|761738_762146_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY10722.1|762268_763219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10723.1|763334_763778_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY10724.1|763840_764635_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY10725.1|764800_765937_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY10726.1|766007_767141_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY10727.1|767290_767551_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY10728.1|767584_767896_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY10729.1|768320_769469_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY10730.1|769583_770549_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY10731.1|770817_771684_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10732.1|771814_773863_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY10733.1|773880_775878_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY10734.1|775912_777250_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY10735.1|777512_779366_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10736.1|779420_780902_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY10737.1|780917_781505_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY13491.1|781587_781767_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10738.1|781953_787074_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY10739.1|787151_789290_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY10740.1|789286_790609_+	protein CyaD	NA	NA	NA	NA	NA
AZY10741.1|790610_792035_+	protein CyaE	NA	NA	NA	NA	NA
AZY10742.1|792125_793034_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10743.1|793098_794013_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY10744.1|794850_795534_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY10745.1|795550_796294_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY10746.1|796323_797184_+	aminotransferase	NA	NA	NA	NA	NA
AZY10747.1|797191_797758_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10748.1|797846_798803_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10749.1|798847_799600_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY10750.1|799596_801342_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY10751.1|801426_802161_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10752.1|802477_803500_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY10753.1|803515_804238_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10754.1|804382_805390_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY10755.1|805430_806963_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY10756.1|806959_808078_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY10757.1|808074_808857_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY10758.1|808868_809732_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY13492.1|809750_810848_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10759.1|810916_811843_-	VOC family protein	NA	NA	NA	NA	NA
AZY10760.1|811877_813572_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY10761.1|813771_814707_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY10762.1|814812_815763_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10763.1|815861_816518_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY10764.1|816665_819374_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY10765.1|819383_820403_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY10766.1|820399_821350_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	854097	903361	4104293	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZY10795.1|854097_855048_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13493.1|855020_855620_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10796.1|855621_856056_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY10797.1|856052_856487_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10798.1|856470_857274_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY10799.1|857290_858106_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY10800.1|858102_858918_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY10801.1|859064_859766_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10802.1|859793_861752_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY10803.1|861834_862785_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10804.1|863005_863674_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY10805.1|863797_864904_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY10806.1|864916_868030_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY10807.1|868026_869520_+	RND transporter	NA	NA	NA	NA	NA
AZY10808.1|869534_870206_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY10809.1|870249_870744_-	azurin	NA	NA	NA	NA	NA
AZY10810.1|870884_871532_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY13494.1|871635_873684_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY10811.1|873680_875693_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY10812.1|875718_877053_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY13495.1|877161_878154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10813.1|878220_880305_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY10814.1|880329_881301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10815.1|881429_882431_-	peptidase M14	NA	NA	NA	NA	NA
AZY10816.1|882464_883706_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY10817.1|883786_884710_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY10818.1|884787_885612_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY10819.1|885808_886825_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY10820.1|887021_888005_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10821.1|889603_890992_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY10822.1|891022_892012_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10823.1|892122_893355_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY10824.1|893636_894437_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10825.1|894459_896691_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY10826.1|897478_897925_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY10827.1|897946_898693_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY10828.1|898836_899814_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY10829.1|900447_901059_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY10830.1|901052_902270_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY10831.1|902410_903361_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	912973	977913	4104293	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY10840.1|912973_913924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10841.1|913920_915771_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY10842.1|916151_916811_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY10843.1|916898_917051_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10844.1|917159_917327_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10845.1|917338_918019_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY10846.1|918300_919017_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY10847.1|919031_920333_-	phospholipase	NA	NA	NA	NA	NA
AZY10848.1|922477_925366_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY10849.1|925589_926942_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY10850.1|926970_927492_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY10851.1|927488_928943_+	carboxylase	NA	NA	NA	NA	NA
AZY10852.1|928977_929226_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10853.1|929331_930207_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10854.1|930232_931288_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10855.1|931300_932092_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10856.1|932124_933495_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY10857.1|934671_935622_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10858.1|935674_935896_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10859.1|936055_936268_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10860.1|936387_937506_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY10861.1|937602_937818_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10862.1|938011_938263_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10863.1|938375_939326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10864.1|939322_939706_-	ferredoxin	NA	NA	NA	NA	NA
AZY10865.1|939760_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY13497.1|941724_942552_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY10866.1|942597_943578_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY10867.1|943574_943787_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10868.1|943783_944965_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY10869.1|945128_945863_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY10870.1|945864_948477_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY10871.1|948612_950526_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY10872.1|951141_951552_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY10873.1|951649_952735_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY10874.1|952833_953784_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10875.1|953780_954755_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10876.1|954879_955791_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY13498.1|956067_956460_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY10877.1|956589_957540_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10878.1|957569_957752_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY10879.1|957790_958048_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10880.1|958524_959706_-	MFS transporter	NA	NA	NA	NA	NA
AZY10881.1|959921_960599_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY10882.1|960595_961369_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY10883.1|961446_962028_-	OmpA family protein	NA	NA	NA	NA	NA
AZY10884.1|962398_965080_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY10885.1|965079_966213_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY10886.1|966205_967291_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY10887.1|967377_968277_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY10888.1|968273_969602_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY10889.1|969616_970288_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY10890.1|970460_972191_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY10891.1|972192_972552_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY10892.1|972743_973058_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY10893.1|973100_974321_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY10894.1|974317_975259_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY10895.1|975255_976245_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY10896.1|976279_976864_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY10897.1|976962_977913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	997318	1060469	4104293	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY10912.1|997318_998269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10913.1|998373_999423_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY10914.1|999560_1000577_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY10915.1|1002085_1002658_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY10916.1|1002717_1003449_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY13500.1|1003500_1004418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10917.1|1005225_1008405_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY10918.1|1008401_1009784_+	multidrug transporter	NA	NA	NA	NA	NA
AZY10919.1|1009853_1010105_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY10920.1|1010250_1010901_-	SCO family protein	NA	NA	NA	NA	NA
AZY10921.1|1011051_1013166_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY10922.1|1013241_1014093_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY10923.1|1014089_1014716_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY10924.1|1014712_1016467_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY10925.1|1016759_1019465_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY10926.1|1019477_1021139_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY10927.1|1021151_1022942_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY10928.1|1023163_1024339_-	flagellin FliC	NA	NA	NA	NA	NA
AZY10929.1|1024381_1025332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10930.1|1025430_1026171_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY10931.1|1026365_1028402_+	transketolase	NA	NA	NA	NA	NA
AZY10932.1|1028419_1029430_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY10933.1|1029547_1030741_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY10934.1|1030770_1031544_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY10935.1|1031540_1032731_-	acetate kinase	NA	NA	NA	NA	NA
AZY10936.1|1032756_1033695_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY13501.1|1033691_1036040_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY10937.1|1036194_1036902_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY10938.1|1036939_1038073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10939.1|1038349_1038898_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY10940.1|1038916_1039402_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY10941.1|1039579_1040518_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY10942.1|1040520_1040838_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY10943.1|1040883_1041828_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10944.1|1043508_1044159_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY10945.1|1044212_1044548_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10946.1|1044544_1045405_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY10947.1|1045421_1045703_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10948.1|1045776_1046040_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY10949.1|1046283_1047234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10950.1|1047532_1048270_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY10951.1|1048705_1049029_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY10952.1|1049063_1049624_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY10953.1|1049744_1050620_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY10954.1|1050632_1051580_+	motility protein MotB	NA	NA	NA	NA	NA
AZY10955.1|1051681_1051975_+	response regulator	NA	NA	NA	NA	NA
AZY10956.1|1052001_1054059_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY10957.1|1054073_1054574_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY10958.1|1054647_1056354_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY10959.1|1057217_1058270_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY10960.1|1058322_1058712_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY10961.1|1058720_1059353_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY10962.1|1059452_1060469_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	1066453	1134615	4104293	tRNA,holin,transposase	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
AZY10967.1|1066453_1067881_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY10968.1|1068818_1069835_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY10969.1|1070167_1071103_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY10970.1|1071152_1073033_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY10971.1|1073099_1073444_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY10972.1|1073588_1074725_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY10973.1|1074721_1075795_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY10974.1|1075952_1077389_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY13503.1|1077479_1078121_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY10975.1|1078456_1079473_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY13504.1|1082619_1084041_-	siroheme synthase	NA	NA	NA	NA	NA
AZY10976.1|1084304_1085021_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10977.1|1085105_1085423_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY10978.1|1085463_1085877_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY10979.1|1085878_1086238_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10980.1|1086280_1087825_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY10981.1|1087908_1088739_+	transglycosylase	NA	NA	NA	NA	NA
AZY10982.1|1088773_1089928_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY10983.1|1089970_1090843_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10984.1|1090959_1093248_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY10985.1|1094454_1094919_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY10986.1|1094945_1095896_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13505.1|1096263_1097040_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY10987.1|1097084_1097942_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY10988.1|1097963_1098980_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY10989.1|1099114_1100155_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY10990.1|1100349_1102431_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY10991.1|1102666_1104160_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY10992.1|1104390_1105185_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY10993.1|1105405_1106764_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY10994.1|1106760_1107603_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY10995.1|1107621_1109508_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY10996.1|1109745_1110378_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY10997.1|1110396_1110999_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10998.1|1111150_1112101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10999.1|1112903_1113704_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11000.1|1113747_1114734_-	homoserine kinase	NA	NA	NA	NA	NA
AZY11001.1|1114873_1115887_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY11002.1|1115883_1116834_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11003.1|1116946_1117405_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY11004.1|1117441_1118755_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11005.1|1118772_1119144_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY11006.1|1119140_1120604_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY11007.1|1120696_1121473_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY11008.1|1121454_1124334_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY11009.1|1124516_1125467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11010.1|1125634_1126459_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY11011.1|1126458_1127337_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY11012.1|1128241_1129357_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11013.1|1129364_1130180_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY11014.1|1130176_1132042_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY11015.1|1132120_1132753_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11016.1|1132749_1133052_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11017.1|1133094_1134615_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	1316904	1385391	4104293	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZY11160.1|1316904_1317855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11161.1|1318623_1319262_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY13515.1|1320151_1320598_+	glutamate racemase	NA	NA	NA	NA	NA
AZY11162.1|1320679_1321381_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY11163.1|1321381_1322149_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY11164.1|1322145_1323384_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY11165.1|1323383_1324310_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY11166.1|1324412_1325528_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11167.1|1325543_1326494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11168.1|1326847_1327429_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY11169.1|1327425_1328259_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY13516.1|1328469_1329783_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY11170.1|1329959_1330841_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY11171.1|1330860_1331712_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY11172.1|1331764_1332853_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY11173.1|1332963_1334091_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY13517.1|1334325_1334937_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY11174.1|1335035_1335986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11175.1|1336207_1336585_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY13518.1|1336732_1337230_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY11176.1|1337226_1337754_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZY11177.1|1337887_1338703_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11178.1|1338715_1339897_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY11179.1|1339944_1340838_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY13519.1|1340964_1341435_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11180.1|1341560_1342388_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY11181.1|1342416_1343193_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY11182.1|1343189_1343483_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZY11183.1|1343479_1343944_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY11184.1|1343955_1344741_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY11185.1|1344766_1345267_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY11186.1|1345349_1346528_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY11187.1|1348155_1348491_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY11188.1|1348678_1350127_+	CoA transferase	NA	NA	NA	NA	NA
AZY13520.1|1350184_1350529_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY11189.1|1350635_1351175_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY11190.1|1351267_1352218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11191.1|1352204_1352687_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11192.1|1352956_1353388_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11193.1|1353569_1353974_-	DoxX family protein	NA	NA	NA	NA	NA
AZY11194.1|1355210_1355534_+	hypothetical protein	NA	NA	NA	NA	NA
AZY11195.1|1355536_1356424_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY11196.1|1356456_1356882_-	universal stress protein	NA	NA	NA	NA	NA
AZY11197.1|1356953_1357307_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11198.1|1357546_1358053_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11199.1|1358091_1359423_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZY11200.1|1359482_1360298_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZY11201.1|1360294_1361149_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZY13521.1|1364211_1366755_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZY11202.1|1368121_1369876_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZY11203.1|1369872_1371993_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZY11204.1|1371997_1374193_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZY13522.1|1374189_1377531_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZY11205.1|1380333_1381284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11206.1|1381349_1381529_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13523.1|1381645_1382368_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY11207.1|1382387_1383533_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY11208.1|1384440_1385391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	1445882	1501370	4104293	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZY11256.1|1445882_1446833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11257.1|1448034_1448481_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZY11258.1|1448473_1449949_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZY11259.1|1449945_1450701_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZY11260.1|1450693_1451704_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZY11261.1|1451693_1453370_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZY11262.1|1453682_1454015_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZY11263.1|1454028_1454424_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11264.1|1454433_1454760_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZY11265.1|1454756_1455083_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY11266.1|1455009_1456032_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY11267.1|1456028_1456409_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZY11268.1|1456426_1456855_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZY11269.1|1456862_1458236_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZY13527.1|1458376_1458754_-	flagellar protein	NA	NA	NA	NA	NA
AZY11270.1|1459016_1460324_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZY11271.1|1460384_1461215_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY11272.1|1461211_1461700_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZY11273.1|1461741_1463262_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZY13528.1|1463305_1463782_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY11274.1|1464585_1467183_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZY11275.1|1467212_1468034_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZY11276.1|1468760_1469510_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZY11277.1|1469642_1470572_+	elongation factor Ts	NA	NA	NA	NA	NA
AZY11278.1|1470669_1471386_+	UMP kinase	NA	NA	NA	NA	NA
AZY11279.1|1471400_1471961_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZY11280.1|1471998_1472892_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZY11281.1|1472911_1473769_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZY11282.1|1473765_1474965_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZY11283.1|1475004_1476339_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZY11284.1|1476391_1478728_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZY13529.1|1478853_1479417_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZY11285.1|1479425_1480517_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZY11286.1|1480588_1481044_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZY11287.1|1481044_1481839_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZY11288.1|1481835_1483017_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZY11289.1|1483003_1483609_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZY11290.1|1483605_1484379_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZY11291.1|1484390_1485218_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZY11292.1|1485379_1487743_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZY11293.1|1487810_1488530_-	GMP synthase	NA	NA	NA	NA	NA
AZY11294.1|1488653_1489079_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZY11295.1|1489113_1490064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11296.1|1490181_1491108_+	paraslipin	NA	NA	NA	NA	NA
AZY11297.1|1491173_1492331_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY11298.1|1492311_1492779_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY11299.1|1492926_1493877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11300.1|1493893_1494328_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY11301.1|1494317_1494668_+	RnfH family protein	NA	NA	NA	NA	NA
AZY11302.1|1494864_1496019_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY11303.1|1496015_1497188_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY11304.1|1497235_1498129_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY11305.1|1498174_1498612_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY11306.1|1498671_1499361_+	VIT family protein	NA	NA	NA	NA	NA
AZY11307.1|1499370_1500321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11308.1|1500419_1501370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	1540693	1598775	4104293	tRNA,protease,transposase	Planktothrix_phage(15.38%)	60	NA	NA
AZY11341.1|1540693_1541506_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY11342.1|1541650_1542745_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11343.1|1542956_1543586_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11344.1|1543588_1545256_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY11345.1|1545270_1545927_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY11346.1|1546406_1547357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11347.1|1547383_1548157_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY11348.1|1548168_1549410_+	MFS transporter	NA	NA	NA	NA	NA
AZY11349.1|1551191_1552142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11350.1|1552173_1553271_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY11351.1|1553267_1554218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11352.1|1554639_1555032_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11353.1|1555037_1555814_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY11354.1|1556201_1558151_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY11355.1|1558171_1558717_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY11356.1|1558853_1559810_+	glutathione synthetase	NA	NA	NA	NA	NA
AZY11357.1|1559820_1560219_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY11358.1|1560334_1560604_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY11359.1|1560725_1562420_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY11360.1|1562584_1562809_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11361.1|1563407_1564358_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY11362.1|1564399_1565560_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11363.1|1565720_1566641_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY11364.1|1566653_1567295_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY11365.1|1567291_1567963_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY11366.1|1567959_1568730_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY11367.1|1568828_1569779_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11368.1|1569995_1570400_-	GFA family protein	NA	NA	NA	NA	NA
AZY11369.1|1570473_1571664_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY11370.1|1571697_1572024_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY11371.1|1572046_1572562_-	transporter	NA	NA	NA	NA	NA
AZY11372.1|1572620_1573847_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY11373.1|1574024_1575155_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY11374.1|1575389_1575971_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY11375.1|1576107_1577172_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY11376.1|1577256_1577703_-	GFA family protein	NA	NA	NA	NA	NA
AZY11377.1|1577927_1578809_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY11378.1|1578863_1579115_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY11379.1|1579117_1579519_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY11380.1|1579538_1579775_+	hypothetical protein	NA	NA	NA	NA	NA
AZY11381.1|1579782_1580262_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY11382.1|1580447_1580927_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY11383.1|1580929_1582120_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY11384.1|1582124_1583177_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY11385.1|1583313_1584336_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY11386.1|1584427_1585264_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11387.1|1585456_1586362_+	agmatinase	NA	NA	NA	NA	NA
AZY11388.1|1586388_1587180_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11389.1|1587202_1587895_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY11390.1|1587916_1588669_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY11391.1|1588797_1590357_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY11392.1|1590388_1590934_+	acyl dehydratase	NA	NA	NA	NA	NA
AZY11393.1|1591071_1592328_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY11394.1|1592344_1594039_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY11395.1|1594196_1595084_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY11396.1|1595121_1596054_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY13531.1|1596067_1596556_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY11397.1|1596673_1597252_+|protease	protease	protease	NA	NA	NA	NA
AZY11398.1|1597324_1597726_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY11399.1|1597824_1598775_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	1653977	1725131	4104293	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZY11446.1|1653977_1654928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11447.1|1654949_1656170_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY11448.1|1656355_1657768_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY11449.1|1657831_1658899_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY11450.1|1658895_1660386_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY13534.1|1660395_1661340_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11451.1|1661499_1662198_+	pirin family protein	NA	NA	NA	NA	NA
AZY11452.1|1662275_1663181_+	pirin family protein	NA	NA	NA	NA	NA
AZY11453.1|1663200_1664151_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11454.1|1664249_1665044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY11455.1|1665048_1666719_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY11456.1|1666842_1667892_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11457.1|1668213_1668990_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY11458.1|1669054_1669957_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11459.1|1671250_1672054_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY11460.1|1674747_1675134_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY11461.1|1675149_1677240_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZY11462.1|1677291_1678245_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY13535.1|1678259_1679147_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11463.1|1679284_1680811_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY13536.1|1680909_1681410_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY11464.1|1681733_1683689_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY11465.1|1683856_1685941_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11466.1|1685967_1686753_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY11467.1|1687608_1688379_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY11468.1|1688378_1689119_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY11469.1|1689160_1690330_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY11470.1|1690361_1692446_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY11471.1|1692442_1693333_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY11472.1|1693329_1694427_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY11473.1|1694449_1695739_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY11474.1|1695750_1696776_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY11475.1|1696772_1698830_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY11476.1|1698843_1700019_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY11477.1|1700100_1701051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11478.1|1701109_1701883_+	oxidoreductase	NA	NA	NA	NA	NA
AZY11479.1|1701875_1703432_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY11480.1|1703428_1704379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11481.1|1705705_1706308_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11482.1|1706547_1707249_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY11483.1|1707242_1708025_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY11484.1|1708209_1709160_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11485.1|1709258_1709996_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY11486.1|1710185_1710944_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY11487.1|1710990_1711980_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY11488.1|1712157_1713126_-	transporter	NA	NA	NA	NA	NA
AZY11489.1|1714665_1715634_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY11490.1|1715642_1716584_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY11491.1|1717057_1718068_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13537.1|1718058_1719573_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY11492.1|1719569_1720916_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13538.1|1720918_1721953_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY11493.1|1722002_1723628_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY11494.1|1724180_1725131_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	1745922	1807270	4104293	tRNA,transposase	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZY11508.1|1745922_1746873_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13544.1|1747166_1747889_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY11509.1|1748327_1749515_-	MFS transporter	NA	NA	NA	NA	NA
AZY11510.1|1749518_1749899_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11511.1|1751618_1752590_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY11512.1|1752603_1753317_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY11513.1|1753321_1754239_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11514.1|1754345_1754642_+	hypothetical protein	NA	NA	NA	NA	NA
AZY11515.1|1754740_1755691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11516.1|1756849_1759783_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY11517.1|1759782_1760127_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY11518.1|1760123_1761752_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY11519.1|1761748_1762228_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY11520.1|1762224_1762509_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY11521.1|1762505_1762832_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZY11522.1|1762987_1763938_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11523.1|1763981_1764524_+	hypothetical protein	NA	NA	NA	NA	NA
AZY11524.1|1764621_1765470_+	hydrolase	NA	NA	NA	NA	NA
AZY11525.1|1765462_1765969_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY11526.1|1765965_1766967_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY11527.1|1766979_1767774_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY11528.1|1767822_1769724_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY11529.1|1769720_1770344_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11530.1|1770470_1771595_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11531.1|1771912_1773580_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY11532.1|1773735_1774512_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY11533.1|1774596_1775595_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11534.1|1775591_1776365_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY11535.1|1777349_1778300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11536.1|1778323_1778788_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY11537.1|1778934_1780143_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY11538.1|1780153_1780624_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY11539.1|1780742_1782032_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY11540.1|1784772_1785723_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11541.1|1785821_1786838_-	folate-binding protein	NA	NA	NA	NA	NA
AZY11542.1|1787004_1788051_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY11543.1|1788047_1788674_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY11544.1|1788670_1789723_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY11545.1|1789772_1790543_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY11546.1|1790593_1791430_+	hypothetical protein	NA	NA	NA	NA	NA
AZY11547.1|1791625_1792366_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11548.1|1792440_1793184_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11549.1|1793845_1794619_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY11550.1|1795756_1797046_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY11551.1|1798656_1799904_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY11552.1|1799913_1801623_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY11553.1|1801619_1802558_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY11554.1|1802554_1803838_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY11555.1|1803841_1804324_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY11556.1|1804324_1805311_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11557.1|1805483_1806203_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11558.1|1806319_1807270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2197627	2252863	4104293	protease,transposase	Lake_Baikal_phage(25.0%)	50	NA	NA
AZY11861.1|2197627_2198578_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11862.1|2198778_2199588_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY11863.1|2199712_2200663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11864.1|2200659_2201553_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY11865.1|2201677_2201872_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY11866.1|2201871_2202213_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY11867.1|2202222_2204085_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY11868.1|2204214_2204727_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY11869.1|2204729_2205053_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY11870.1|2205054_2205465_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY11871.1|2205502_2206714_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY11872.1|2206731_2207244_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY11873.1|2207459_2207951_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY11874.1|2208203_2210240_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY11875.1|2210317_2211520_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY11876.1|2211570_2212299_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY11877.1|2213856_2214807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11878.1|2215377_2215590_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11879.1|2215607_2216339_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11880.1|2216373_2217015_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY11881.1|2217007_2217724_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY11882.1|2219888_2220665_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY11883.1|2220686_2221844_-	thiolase	NA	NA	NA	NA	NA
AZY11884.1|2221840_2222272_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11885.1|2222268_2223072_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY11886.1|2223085_2223541_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY11887.1|2223553_2224525_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY11888.1|2224590_2225814_-	CoA transferase	NA	NA	NA	NA	NA
AZY11889.1|2226041_2226992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11890.1|2227115_2229569_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY11891.1|2229757_2231062_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY11892.1|2231166_2231820_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY11893.1|2231822_2233133_-	trigger factor	NA	NA	NA	NA	NA
AZY11894.1|2233311_2233890_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY11895.1|2234001_2234202_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY11896.1|2234547_2235114_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY11897.1|2235197_2235401_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY11898.1|2235707_2236028_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11899.1|2236069_2236351_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11900.1|2236425_2237682_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY11901.1|2238064_2238394_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY11902.1|2239964_2240786_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY11903.1|2240785_2241925_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY11904.1|2241931_2242828_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY11905.1|2242824_2244750_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY11906.1|2245109_2247722_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY11907.1|2247774_2250075_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY11908.1|2250071_2251280_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY11909.1|2251541_2251916_+	hypothetical protein	NA	NA	NA	NA	NA
AZY11910.1|2251912_2252863_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2255970	2310240	4104293	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
AZY11913.1|2255970_2258832_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY11914.1|2258834_2259341_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY11915.1|2259445_2260654_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY11916.1|2260655_2261594_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11917.1|2261755_2262229_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY11918.1|2262225_2263176_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11919.1|2263162_2263342_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11920.1|2263286_2263727_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY11921.1|2263855_2265085_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY11922.1|2265123_2265945_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY11923.1|2265998_2267150_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY11924.1|2267241_2267730_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY11925.1|2270256_2272830_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY11926.1|2272900_2275474_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY11927.1|2275739_2275940_+	CsbD family protein	NA	NA	NA	NA	NA
AZY11928.1|2275971_2276133_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY11929.1|2276190_2276529_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY11930.1|2276677_2277628_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11931.1|2277726_2278677_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11932.1|2278775_2279495_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY13562.1|2279571_2280120_+	arylesterase	NA	NA	NA	NA	NA
AZY11933.1|2280101_2282117_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY11934.1|2282299_2283049_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY11935.1|2283061_2283925_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY11936.1|2283928_2285344_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY11937.1|2285477_2286206_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY11938.1|2286344_2286545_-	copper chaperone	NA	NA	NA	NA	NA
AZY11939.1|2286720_2287119_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY11940.1|2287142_2288543_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY13563.1|2288661_2289414_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11941.1|2289702_2290380_-	hypothetical protein	NA	NA	NA	NA	NA
AZY11942.1|2290406_2291186_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY11943.1|2291182_2292067_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY13564.1|2292084_2292774_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY11944.1|2292848_2293607_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY11945.1|2293732_2294380_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY11946.1|2294647_2295664_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY11947.1|2295761_2296802_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY11948.1|2296936_2298229_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY11949.1|2299588_2299972_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY11950.1|2299989_2300577_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY11951.1|2300614_2301565_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11952.1|2301663_2302224_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY11953.1|2302220_2302766_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11954.1|2302961_2303990_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY11955.1|2304030_2305371_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY11956.1|2305479_2306484_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY11957.1|2306590_2309191_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY11958.1|2309289_2310240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2349353	2412930	4104293	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
AZY11997.1|2349353_2350304_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY11998.1|2350605_2351082_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZY11999.1|2351705_2353343_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZY12000.1|2353373_2354687_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZY12001.1|2354820_2355138_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12002.1|2355238_2356561_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12003.1|2356557_2357508_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12004.1|2357605_2358556_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12005.1|2359085_2360108_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12006.1|2360136_2360967_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZY13569.1|2360983_2362681_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY12007.1|2362745_2363822_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZY12008.1|2363981_2364845_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY12009.1|2364875_2365445_+	phosphohydrolase	NA	NA	NA	NA	NA
AZY12010.1|2365461_2366313_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY12011.1|2367370_2368252_+|protease	protease HtpX	protease	NA	NA	NA	NA
AZY12012.1|2368326_2369316_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZY12013.1|2369378_2370329_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY12014.1|2370391_2371249_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY12015.1|2371308_2371797_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12016.1|2373345_2374560_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY12017.1|2374556_2376143_+	multidrug resistance protein	NA	NA	NA	NA	NA
AZY12018.1|2376161_2377229_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZY12019.1|2377333_2378878_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZY12020.1|2379297_2380872_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12021.1|2380979_2381996_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY12022.1|2381992_2382832_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY12023.1|2382836_2384474_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZY12024.1|2384470_2385421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12025.1|2385563_2386838_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZY12026.1|2386834_2387158_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY13570.1|2387230_2388244_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZY12027.1|2388263_2389526_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY12028.1|2389528_2390452_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY12029.1|2390448_2391942_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY12030.1|2391952_2392885_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZY12031.1|2393066_2394392_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZY12032.1|2394426_2395782_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZY12033.1|2395842_2397441_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZY12034.1|2397517_2398249_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY12035.1|2398283_2399657_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZY12036.1|2399672_2400584_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZY12037.1|2400574_2401168_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZY12038.1|2401229_2401616_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZY12039.1|2401627_2402098_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZY12040.1|2402109_2402733_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY12041.1|2402753_2405501_-	autotransporter Vag8	NA	NA	NA	NA	NA
AZY12042.1|2411777_2411993_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12043.1|2411979_2412930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2684916	2725584	4104293	tRNA,transposase	Salmonella_phage(33.33%)	44	NA	NA
AZY12274.1|2684916_2685867_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12275.1|2685977_2686160_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12276.1|2686259_2686856_-	lipoprotein	NA	NA	NA	NA	NA
AZY12277.1|2687039_2688131_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12278.1|2688630_2689041_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12279.1|2689099_2689441_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZY12280.1|2689446_2691864_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY12281.1|2691876_2692899_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY12282.1|2692973_2693333_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY12283.1|2693348_2693546_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY12284.1|2693881_2694832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12285.1|2694818_2695007_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12286.1|2695026_2695476_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY12287.1|2695472_2696423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12288.1|2696533_2697982_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY12289.1|2698096_2698378_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12290.1|2698481_2699432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12291.1|2699676_2700390_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY12292.1|2700512_2700740_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY12293.1|2701034_2701673_-	DedA family protein	NA	NA	NA	NA	NA
AZY12294.1|2701745_2702816_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY12295.1|2702812_2703763_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12296.1|2704178_2704703_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY12297.1|2704706_2704976_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12298.1|2705174_2706236_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY12299.1|2706319_2707954_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY12300.1|2707955_2708759_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY12301.1|2708787_2709747_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY12302.1|2709750_2711265_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12303.1|2711301_2712306_-	peptidase M20	NA	NA	NA	NA	NA
AZY12304.1|2712313_2712562_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12305.1|2712736_2713207_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY12306.1|2713242_2713854_-	LysE family translocator	NA	NA	NA	NA	NA
AZY12307.1|2713884_2714508_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY12308.1|2714588_2716121_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY12309.1|2716155_2717397_-	MFS transporter	NA	NA	NA	NA	NA
AZY12310.1|2717440_2718472_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY12311.1|2718468_2719638_-	amine oxidase	NA	NA	NA	NA	NA
AZY12312.1|2719631_2720312_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY12313.1|2720473_2721316_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12314.1|2721478_2722450_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY12315.1|2722621_2723500_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY12316.1|2723522_2724593_-	FUSC family protein	NA	NA	NA	NA	NA
AZY12317.1|2724633_2725584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2781049	2853919	4104293	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZY12361.1|2781049_2781466_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY12362.1|2781576_2782209_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY12363.1|2782237_2782681_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY12364.1|2782702_2783794_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12365.1|2783848_2784649_-	aldolase	NA	NA	NA	NA	NA
AZY12366.1|2784784_2785405_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY12367.1|2785544_2786018_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12368.1|2787157_2788108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12369.1|2788104_2795766_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY12370.1|2796006_2800053_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY12371.1|2800365_2800947_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY12372.1|2800943_2802242_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY12373.1|2802321_2803350_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY12374.1|2803273_2803624_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12375.1|2803610_2804561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12376.1|2804557_2805508_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12377.1|2805824_2806430_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY12378.1|2806483_2807797_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY12379.1|2807871_2808342_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY12380.1|2808341_2809130_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY12381.1|2809140_2810793_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY12382.1|2810880_2811831_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13585.1|2812992_2813499_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY12383.1|2813495_2814260_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY12384.1|2814275_2814560_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY12385.1|2814624_2815614_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY12386.1|2815785_2816715_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY12387.1|2816686_2817373_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY12388.1|2817406_2817952_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY12389.1|2817996_2819262_+	peptidase M48	NA	NA	NA	NA	NA
AZY12390.1|2819258_2820161_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY12391.1|2821342_2822287_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY12392.1|2822381_2823899_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12393.1|2823940_2825569_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY12394.1|2825676_2826558_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12395.1|2829670_2830045_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY12396.1|2830069_2830408_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY12397.1|2830451_2832086_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY12398.1|2832124_2833471_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY13586.1|2833578_2835000_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY12399.1|2835069_2835654_-	nitroreductase	NA	NA	NA	NA	NA
AZY12400.1|2835756_2836707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12401.1|2836841_2837948_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12402.1|2837958_2839056_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY12403.1|2839200_2840406_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY12404.1|2840412_2840934_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY12405.1|2840930_2841422_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY12406.1|2841418_2841670_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY12407.1|2841650_2842136_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY12408.1|2842271_2845733_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12409.1|2845729_2846635_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY12410.1|2846644_2847076_-	lipoprotein	NA	NA	NA	NA	NA
AZY13587.1|2847322_2847826_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY12411.1|2847837_2849304_+	MFS transporter	NA	NA	NA	NA	NA
AZY12412.1|2849378_2850254_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13588.1|2850250_2851258_-	biotin synthase	NA	NA	NA	NA	NA
AZY12413.1|2851725_2852031_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY12414.1|2852121_2852712_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12415.1|2852902_2853919_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2857062	2923871	4104293	protease,transposase	uncultured_Mediterranean_phage(28.57%)	48	NA	NA
AZY12418.1|2857062_2858013_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12419.1|2858111_2859062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12420.1|2859058_2859853_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY12421.1|2859884_2860589_-	oxidoreductase	NA	NA	NA	NA	NA
AZY12422.1|2860663_2861464_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY12423.1|2861460_2861868_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY12424.1|2861864_2862506_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY12425.1|2862498_2864520_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY12426.1|2865759_2867091_+	MFS transporter	NA	NA	NA	NA	NA
AZY12427.1|2867087_2868038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12428.1|2869744_2870050_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12429.1|2870718_2871057_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY12430.1|2875609_2876212_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12431.1|2876308_2877598_+	MFS transporter	NA	NA	NA	NA	NA
AZY12432.1|2877655_2878387_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY12433.1|2878383_2879187_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY12434.1|2879183_2880272_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY12435.1|2880268_2881198_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY12436.1|2881346_2882492_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12437.1|2883793_2887615_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY12438.1|2887771_2888440_-	lipoprotein	NA	NA	NA	NA	NA
AZY12439.1|2888444_2890118_-	MCE family protein	NA	NA	NA	NA	NA
AZY12440.1|2890136_2891456_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY12441.1|2891460_2893812_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY13589.1|2893831_2896000_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY12442.1|2895996_2901186_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY12443.1|2901275_2901590_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY12444.1|2901817_2902063_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY12445.1|2902157_2902676_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY12446.1|2902775_2903981_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY12447.1|2904096_2905494_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY12448.1|2905610_2906189_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY12449.1|2906261_2907653_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY12450.1|2907820_2908771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12451.1|2909051_2909672_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY12452.1|2909668_2910082_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY12453.1|2910078_2911122_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY12454.1|2911177_2911366_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12455.1|2911375_2912140_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY12456.1|2912230_2912887_+	adenylate kinase	NA	NA	NA	NA	NA
AZY12457.1|2912978_2913737_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY12458.1|2913762_2915364_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY12459.1|2915564_2916569_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY12460.1|2916669_2916933_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY12461.1|2917050_2917827_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY12462.1|2918417_2919368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12463.1|2921751_2922864_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY12464.1|2922920_2923871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2954257	2993446	4104293	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZY12493.1|2954257_2955208_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12494.1|2955194_2955440_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12495.1|2955328_2956225_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY12496.1|2958502_2960728_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY12497.1|2960892_2961981_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY12498.1|2961937_2962591_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY12499.1|2962638_2963436_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12500.1|2963967_2964918_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12501.1|2964998_2966147_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY12502.1|2966203_2967154_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12503.1|2967140_2967359_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12504.1|2967252_2967558_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY12505.1|2967586_2968021_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY12506.1|2968022_2969267_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY12507.1|2969263_2969974_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13591.1|2969988_2970900_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY12508.1|2971262_2971667_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12509.1|2971663_2972122_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12510.1|2972128_2973037_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13592.1|2973033_2973900_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY12511.1|2973886_2974714_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY12512.1|2974724_2975852_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY12513.1|2976929_2978168_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12514.1|2978209_2979472_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12515.1|2979478_2980231_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY12516.1|2980282_2980468_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13593.1|2980743_2981208_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY12517.1|2981239_2981899_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY12518.1|2982043_2984152_+	AsmA family protein	NA	NA	NA	NA	NA
AZY12519.1|2984148_2985099_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12520.1|2985202_2985823_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13594.1|2985926_2986667_+	oxidoreductase	NA	NA	NA	NA	NA
AZY12521.1|2987801_2988926_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12522.1|2988971_2989340_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12523.1|2989581_2990532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12524.1|2991567_2992110_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12525.1|2992314_2992509_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12526.1|2992495_2993446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	2996997	3056650	4104293	tRNA,transposase	Bacillus_virus(22.22%)	58	NA	NA
AZY12530.1|2996997_2997948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12531.1|2998140_2998923_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY13595.1|2998936_2999686_-	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY12532.1|2999713_3001060_-	MFS transporter	NA	NA	NA	NA	NA
AZY12533.1|3001085_3002015_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY12534.1|3002130_3003036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12535.1|3003053_3004253_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY12536.1|3004325_3005018_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY13596.1|3005066_3007556_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY12537.1|3007537_3008488_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12538.1|3008586_3009537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12539.1|3009753_3010122_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY12540.1|3010408_3011335_+	VOC family protein	NA	NA	NA	NA	NA
AZY12541.1|3011378_3012389_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY12542.1|3012385_3012820_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY12543.1|3013945_3014734_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY12544.1|3014743_3015526_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY12545.1|3015529_3016621_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY12546.1|3016726_3018202_+	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY12547.1|3018343_3018892_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY12548.1|3018907_3019369_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY12549.1|3019469_3020459_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY12550.1|3020757_3021459_+	riboflavin synthase	NA	NA	NA	NA	NA
AZY12551.1|3021497_3022871_-	amidase	NA	NA	NA	NA	NA
AZY12552.1|3022909_3024196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12553.1|3025082_3025985_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12554.1|3025932_3027153_-	MFS transporter	NA	NA	NA	NA	NA
AZY12555.1|3027149_3027659_-	nucleoside deaminase	NA	NA	NA	NA	NA
AZY12556.1|3027648_3028344_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY12557.1|3028414_3029284_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12558.1|3029633_3030584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13597.1|3031444_3032134_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY12559.1|3032910_3033873_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY12560.1|3033876_3034737_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY12561.1|3034730_3035123_-	RidA family protein	NA	NA	NA	NA	NA
AZY12562.1|3035153_3036326_-	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY12563.1|3037777_3038575_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12564.1|3038608_3039388_-	KR domain-containing protein	NA	NA	NA	NA	NA
AZY12565.1|3039416_3040289_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12566.1|3040310_3041060_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY13598.1|3041067_3041925_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY12567.1|3041965_3042529_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12568.1|3042559_3042856_-	histidine kinase	NA	NA	NA	NA	NA
AZY12569.1|3042936_3043740_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY12570.1|3043760_3044957_-	CoA transferase	NA	NA	NA	NA	NA
AZY12571.1|3044959_3045961_-	amidase	NA	NA	NA	NA	NA
AZY12572.1|3046065_3046476_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12573.1|3046578_3047241_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12574.1|3047343_3048294_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12575.1|3048290_3049367_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZY12576.1|3049411_3050164_-	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
AZY12577.1|3050726_3051008_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12578.1|3051069_3051765_+	cytochrome B	NA	NA	NA	NA	NA
AZY12579.1|3051849_3052308_-	cytochrome C	NA	NA	NA	NA	NA
AZY12580.1|3052370_3053792_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.3e-109
AZY12581.1|3053906_3054518_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY12582.1|3054615_3055434_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY12583.1|3055534_3056650_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 25
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	3232510	3267348	4104293	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZY12714.1|3232510_3233461_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12715.1|3233905_3234217_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY12716.1|3234216_3234747_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12717.1|3234909_3235860_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12718.1|3236149_3236614_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY12719.1|3236628_3238134_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY12720.1|3238387_3239995_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY12721.1|3240050_3240956_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY12722.1|3241396_3242347_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12723.1|3242445_3243396_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12724.1|3243477_3244059_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY13612.1|3244483_3244789_+	RND transporter	NA	NA	NA	NA	NA
AZY12725.1|3244802_3246137_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY12726.1|3246158_3246698_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY12727.1|3246845_3247310_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY12728.1|3247452_3248568_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY12729.1|3248844_3249348_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY12730.1|3249485_3249686_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12731.1|3249676_3250399_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY12732.1|3250395_3251292_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY12733.1|3251288_3252224_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY13613.1|3252229_3252853_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY12734.1|3252843_3253812_+	nickel transporter	NA	NA	NA	NA	NA
AZY12735.1|3253860_3256002_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY12736.1|3256014_3256995_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY12737.1|3257009_3257702_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY12738.1|3257728_3258640_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY12739.1|3258682_3259573_-	acyltransferase	NA	NA	NA	NA	NA
AZY12740.1|3259569_3260424_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY12741.1|3260572_3261871_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY12742.1|3261981_3262233_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY12743.1|3262312_3263353_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY12744.1|3263632_3265051_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY12745.1|3265121_3265457_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY12746.1|3265456_3266299_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY12747.1|3266397_3267348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	3279177	3330056	4104293	tRNA,integrase,protease,transposase	Planktothrix_phage(33.33%)	40	3312852:3312870	3332740:3332758
AZY12756.1|3279177_3280128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13615.1|3280440_3281919_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY12757.1|3281925_3283035_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY12758.1|3283046_3283727_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY12759.1|3283748_3284504_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY13616.1|3284639_3285524_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY12760.1|3285611_3286193_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12761.1|3286285_3286408_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12762.1|3286453_3286753_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY13617.1|3286904_3287330_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12763.1|3289536_3290040_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY12764.1|3290055_3291006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12765.1|3290992_3291190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12766.1|3291533_3292307_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12767.1|3292439_3293450_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY12768.1|3293601_3295257_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY12769.1|3295311_3295653_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY12770.1|3295666_3297106_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY12771.1|3297238_3298054_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12772.1|3298072_3298261_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12773.1|3298247_3299198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12774.1|3300585_3301533_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12775.1|3301759_3302500_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12776.1|3302585_3303536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12777.1|3304977_3306549_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY12778.1|3306881_3308735_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12779.1|3308779_3311344_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY12780.1|3311762_3312713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3312852:3312870	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY12781.1|3315578_3316073_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY12782.1|3316089_3317040_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12783.1|3317026_3317227_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12784.1|3317223_3318435_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY12785.1|3318450_3321402_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY12786.1|3321403_3324523_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY13618.1|3324519_3324660_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY12787.1|3324670_3325717_-	Fic family protein	NA	NA	NA	NA	NA
AZY12788.1|3326058_3327186_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY12789.1|3327465_3328557_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY12790.1|3328629_3329412_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY12791.1|3329408_3330056_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3332740:3332758	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 27
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	3378943	3432684	4104293	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY12828.1|3378943_3379894_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12829.1|3380298_3380943_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY12830.1|3380967_3381552_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY12831.1|3381652_3382270_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY12832.1|3382272_3383988_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY12833.1|3383984_3384293_-	urease subunit beta	NA	NA	NA	NA	NA
AZY12834.1|3384309_3384945_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY12835.1|3384971_3385274_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY12836.1|3385374_3386229_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY12837.1|3386810_3387083_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY12838.1|3387500_3387908_-	GFA family protein	NA	NA	NA	NA	NA
AZY12839.1|3388277_3389072_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12840.1|3389172_3390408_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY12841.1|3390476_3391493_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY12842.1|3391489_3392881_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY12843.1|3392877_3394074_+	MFS transporter	NA	NA	NA	NA	NA
AZY12844.1|3394070_3395609_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY12845.1|3395605_3396865_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12846.1|3398805_3399756_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12847.1|3400522_3401617_-	CoA transferase	NA	NA	NA	NA	NA
AZY12848.1|3401609_3402944_-	CoA ligase	NA	NA	NA	NA	NA
AZY12849.1|3402897_3403581_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12850.1|3403606_3404770_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY12851.1|3404766_3405768_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY12852.1|3405767_3406640_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY12853.1|3406636_3407386_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY12854.1|3407382_3408174_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY12855.1|3408170_3409310_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12856.1|3409618_3410371_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY12857.1|3410404_3411187_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY12858.1|3411190_3411580_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY12859.1|3412719_3413583_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY12860.1|3413618_3414707_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12861.1|3414703_3415654_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12862.1|3415640_3416009_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12863.1|3416007_3418986_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12864.1|3419912_3420791_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY12865.1|3422739_3423690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12866.1|3423686_3424154_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY12867.1|3424196_3424967_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY12868.1|3424987_3425788_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY12869.1|3425798_3427208_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY12870.1|3427302_3428088_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY12871.1|3428327_3429344_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY12872.1|3429451_3429844_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY12873.1|3429981_3430662_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY12874.1|3430666_3431665_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY12875.1|3431733_3432684_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	3438839	3498139	4104293	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY12879.1|3438839_3440603_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY12880.1|3440714_3441593_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY12881.1|3441705_3442521_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY12882.1|3442524_3442776_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY12883.1|3442860_3443877_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY12884.1|3444207_3444429_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12885.1|3446789_3447707_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY12886.1|3448204_3449413_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY12887.1|3449492_3451064_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY12888.1|3451181_3452117_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY12889.1|3452305_3453250_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY12890.1|3453318_3453534_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12891.1|3453817_3459535_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY12892.1|3459540_3460668_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY12893.1|3460723_3461350_+	aminotransferase	NA	NA	NA	NA	NA
AZY12894.1|3461621_3462638_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY12895.1|3462733_3463444_-	oxidoreductase	NA	NA	NA	NA	NA
AZY13621.1|3463440_3464430_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY12896.1|3464561_3466157_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY12897.1|3466159_3466897_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12898.1|3467052_3467925_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY12899.1|3468193_3469414_+	MFS transporter	NA	NA	NA	NA	NA
AZY12900.1|3469410_3470070_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY12901.1|3470141_3470774_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY12902.1|3470803_3471322_+	flavin reductase	NA	NA	NA	NA	NA
AZY12903.1|3471332_3472442_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY12904.1|3472488_3473343_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY12905.1|3473344_3474247_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12906.1|3475469_3476420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12907.1|3478176_3479166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12908.1|3479341_3480130_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY12909.1|3480126_3481158_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY12910.1|3481176_3481740_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY12911.1|3481795_3483316_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY12912.1|3483579_3484284_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY12913.1|3484291_3485029_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY12914.1|3485134_3485509_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY12915.1|3485551_3486841_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12916.1|3486837_3488007_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY12917.1|3488003_3488843_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY12918.1|3488902_3489838_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY12919.1|3489850_3490801_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12920.1|3490899_3491862_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY12921.1|3491893_3492253_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY12922.1|3492377_3493280_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY12923.1|3493281_3495054_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY12924.1|3495088_3495865_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY12925.1|3497188_3498139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025383	Bordetella pertussis strain J184 chromosome, complete genome	4104293	3513077	3571150	4104293	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZY12937.1|3513077_3514028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12938.1|3514156_3515290_-	peptidase	NA	NA	NA	NA	NA
AZY12939.1|3515333_3516239_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY12940.1|3516241_3517942_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY12941.1|3517938_3518859_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY12942.1|3518866_3519844_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY12943.1|3519902_3520937_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY12944.1|3522911_3523148_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12945.1|3523274_3524138_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY12946.1|3524226_3525048_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY12947.1|3525127_3525865_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY12948.1|3525861_3526854_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY12949.1|3526967_3527630_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12950.1|3527674_3528823_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY12951.1|3531146_3532097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12952.1|3532437_3533388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12953.1|3533486_3534437_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12954.1|3534733_3535231_+	hypothetical protein	NA	NA	NA	NA	NA
AZY12955.1|3535273_3537049_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY13624.1|3537095_3537923_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY12956.1|3537929_3538664_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY12957.1|3539833_3540628_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY12958.1|3540917_3541508_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY12959.1|3541541_3542870_-	amidase	NA	NA	NA	NA	NA
AZY12960.1|3542944_3544090_-	transporter	NA	NA	NA	NA	NA
AZY12961.1|3544201_3545200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12962.1|3545162_3545597_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY12963.1|3547113_3547998_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY12964.1|3547994_3549200_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY12965.1|3549196_3550057_-	endonuclease	NA	NA	NA	NA	NA
AZY12966.1|3550169_3551960_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY12967.1|3552000_3552666_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY12968.1|3552666_3552975_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY13625.1|3553140_3554427_-	hypothetical protein	NA	NA	NA	NA	NA
AZY12969.1|3555860_3556811_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY12970.1|3558762_3559977_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY12971.1|3560082_3561072_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY12972.1|3561068_3561677_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY12973.1|3561689_3562319_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY12974.1|3562315_3562936_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY12975.1|3562967_3563759_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY12976.1|3564601_3565066_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY12977.1|3565084_3566011_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY12978.1|3566064_3567351_-	cytochrome c	NA	NA	NA	NA	NA
AZY12979.1|3568281_3569154_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY12980.1|3569150_3570101_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY12981.1|3570199_3571150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
