The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	0	70443	4106368	protease,transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
AZX88488.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX88489.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX88490.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX88491.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX88492.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX88493.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX88494.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX88495.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX88496.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX88497.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX88498.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX88499.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX88500.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX88501.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX91870.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX88502.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88503.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX88504.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX88505.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88506.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX88507.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88508.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX88509.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX91871.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88510.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX88511.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX88512.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88513.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX88514.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX88515.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX88516.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX88517.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX88518.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX88519.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX88520.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX88521.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX88522.1|45112_45748_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88523.1|45719_45956_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX88524.1|46083_46977_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88525.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX88526.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX88527.1|50140_51091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88528.1|51133_52390_+	MFS transporter	NA	NA	NA	NA	NA
AZX88529.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX88530.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX88531.1|54976_55666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX88532.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX88533.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88534.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88535.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX88536.1|60473_60893_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX88537.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88538.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88539.1|63472_64054_-|protease	protease	protease	NA	NA	NA	NA
AZX88540.1|64066_64384_-	ferredoxin	NA	NA	NA	NA	NA
AZX88541.1|64487_65546_-	oxidoreductase	NA	NA	NA	NA	NA
AZX88542.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX88543.1|67481_68663_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88544.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88545.1|70128_70443_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	77633	136107	4106368	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
AZX88551.1|77633_78584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91873.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88552.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX88553.1|82821_83526_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX88554.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX88555.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
AZX88556.1|85480_86713_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX88557.1|86730_87990_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX88558.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX88559.1|89109_90210_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX88560.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX88561.1|90792_91845_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX91874.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX88562.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX88563.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88564.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX88565.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX88566.1|96202_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX88567.1|97338_98178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX88568.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88569.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX88570.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX88571.1|101787_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX88572.1|102807_103083_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX88573.1|103090_103753_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX88574.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX88575.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX88576.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX88577.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX88578.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88579.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX88580.1|110551_111181_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX88581.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX88582.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX91875.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX88583.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91876.1|114943_115960_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX88584.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX88585.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX88586.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88587.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX88588.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX88589.1|121121_122072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88590.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AZX88591.1|123072_123906_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX91877.1|124742_125753_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX91878.1|125749_126139_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88592.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
AZX88593.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX88594.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91879.1|131149_132589_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AZX88595.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZX88596.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88597.1|135156_136107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	164891	225401	4106368	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX88620.1|164891_165842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88621.1|167285_168188_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88622.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
AZX88623.1|169125_170508_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX88624.1|170541_171171_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX88625.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX88626.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91882.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
AZX88627.1|174299_175250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88628.1|176365_176893_+	lipoprotein	NA	NA	NA	NA	NA
AZX88629.1|176984_177800_+	lipoprotein	NA	NA	NA	NA	NA
AZX88630.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX88631.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX88632.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88633.1|181331_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX88634.1|182423_184328_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX88635.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX88636.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX88637.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
AZX88638.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX91883.1|189528_189975_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX88639.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88640.1|190753_193024_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX88641.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX88642.1|194402_195353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88643.1|195398_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX88644.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX88645.1|197375_198476_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX88646.1|198557_198932_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX88647.1|198991_201856_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX88648.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88649.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
AZX88650.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88651.1|205632_206583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88652.1|206739_207063_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX88653.1|207167_208217_-	cyclase	NA	NA	NA	NA	NA
AZX88654.1|208213_209038_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX88655.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
AZX88656.1|209360_209636_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX88657.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX88658.1|210336_211023_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX88659.1|211152_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88660.1|212054_212780_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX88661.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX88662.1|214272_215205_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX88663.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX88664.1|219051_221994_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX88665.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX88666.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX88667.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX88668.1|224450_225401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	233333	286920	4106368	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
AZX88676.1|233333_234284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88677.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88678.1|235317_236268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88679.1|236366_237164_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX88680.1|238113_238524_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX88681.1|239545_240289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88682.1|240332_241376_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88683.1|241546_243649_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88684.1|245059_246016_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88685.1|246034_246526_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX88686.1|246522_247878_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX88687.1|247878_248577_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX88688.1|248573_249275_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX88689.1|249527_250577_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX88690.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX88691.1|251620_253510_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX88692.1|253596_254235_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91884.1|254377_255622_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX88693.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX88694.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX88695.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
AZX88696.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX88697.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88698.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX88699.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
AZX88700.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88701.1|265570_266521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88702.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88703.1|267709_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX88704.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX88705.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX88706.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX88707.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX88708.1|274097_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX88709.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX91885.1|277137_278088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88710.1|278364_278526_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX88711.1|278533_278674_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88712.1|279192_279642_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX88713.1|279651_280263_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX88714.1|280421_281276_-	cytochrome c1	NA	NA	NA	NA	NA
AZX88715.1|281295_282678_-	cytochrome b	NA	NA	NA	NA	NA
AZX88716.1|282742_283384_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX88717.1|283523_283982_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX88718.1|284006_284783_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX91886.1|284836_285973_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX88719.1|285969_286920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	390853	448362	4106368	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX88818.1|390853_391804_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88819.1|391940_392858_+	reductase	NA	NA	NA	NA	NA
AZX88820.1|392854_393103_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX88821.1|393099_394305_+	CoA transferase	NA	NA	NA	NA	NA
AZX88822.1|394377_395373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88823.1|395395_396616_-	CoA transferase	NA	NA	NA	NA	NA
AZX88824.1|396612_397257_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88825.1|398987_399797_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91892.1|400014_401055_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX88826.1|401153_402137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88827.1|402063_402765_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88828.1|402813_403584_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX88829.1|403580_404822_-	CoA transferase	NA	NA	NA	NA	NA
AZX88830.1|404926_406633_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX88831.1|406629_407526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88832.1|407566_409156_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX88833.1|409205_410198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88834.1|410266_410866_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91893.1|411326_412304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88835.1|412382_413333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88836.1|413421_414336_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX88837.1|414332_414992_+	LysE family translocator	NA	NA	NA	NA	NA
AZX88838.1|415081_416005_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX88839.1|416010_416466_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88840.1|416462_417566_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX91894.1|417485_417794_+	GtrA family protein	NA	NA	NA	NA	NA
AZX88841.1|417753_419373_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX88842.1|419369_420428_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX88843.1|420557_421052_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX88844.1|421144_422122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88845.1|422317_423523_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX88846.1|423519_425031_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX91895.1|425046_426360_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX88847.1|426550_426730_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88848.1|427139_427874_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX88849.1|430318_431269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88850.1|431400_431799_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX88851.1|432209_432680_-	universal stress protein	NA	NA	NA	NA	NA
AZX88852.1|432768_433113_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX88853.1|433212_434613_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX88854.1|436401_436920_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX88855.1|437030_437786_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX88856.1|437981_439214_+	CoA transferase	NA	NA	NA	NA	NA
AZX88857.1|439206_439992_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX88858.1|440058_441030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88859.1|441040_442018_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88860.1|442143_443316_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX88861.1|443342_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX88862.1|444436_445630_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX88863.1|447411_448362_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	619749	720213	4106368	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX89014.1|619749_620700_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89015.1|621398_621782_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89016.1|621839_622442_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX91901.1|622459_622861_-	DoxX family protein	NA	NA	NA	NA	NA
AZX89017.1|622994_623888_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89018.1|623884_624466_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX89019.1|625260_625995_+	arginyltransferase	NA	NA	NA	NA	NA
AZX89020.1|626035_627085_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX89021.1|627232_627811_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX89022.1|628197_629175_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX89023.1|629268_633663_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX89024.1|633863_634712_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89025.1|634870_635683_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX89026.1|635738_636689_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89027.1|636787_637588_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89028.1|637649_638033_+	thioredoxin	NA	NA	NA	NA	NA
AZX89029.1|638044_639478_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX89030.1|639684_640014_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX91902.1|640016_640685_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX89031.1|640948_641869_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX89032.1|641915_642128_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX89033.1|642150_642573_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX89034.1|642589_643690_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX89035.1|643786_645304_-	peptidase	NA	NA	NA	NA	NA
AZX89036.1|645379_646219_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX89037.1|646240_647122_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX89038.1|647203_648298_-	porin	NA	NA	NA	NA	NA
AZX89039.1|648591_649542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91903.1|649616_650558_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89040.1|650641_651001_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89041.1|651382_652420_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89042.1|652736_654077_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX89043.1|654086_654539_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89044.1|654635_655817_+	monooxygenase	NA	NA	NA	NA	NA
AZX89045.1|655876_656908_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX89046.1|656948_657188_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX89047.1|657257_658847_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX89048.1|658846_659395_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX89049.1|659475_660048_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX89050.1|660066_660978_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX89051.1|661051_662020_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX89052.1|662142_663216_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX89053.1|663220_665041_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX89054.1|665117_666068_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89055.1|666156_666492_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX89056.1|666625_667276_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX89057.1|667297_668716_-	amidase	NA	NA	NA	NA	NA
AZX89058.1|668785_669541_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91904.1|669509_670268_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX89059.1|670278_671160_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX89060.1|671176_671884_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX89061.1|671886_672645_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX89062.1|672854_674597_+	sulfite reductase	NA	NA	NA	NA	NA
AZX89063.1|674589_675114_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX89064.1|675153_675948_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX89065.1|676115_677189_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89066.1|677287_678238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89067.1|678489_678702_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91905.1|678767_679379_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX89068.1|679858_680179_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89069.1|680171_680870_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89070.1|680884_681106_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89071.1|681123_682074_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91906.1|682749_683199_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX89072.1|683185_684463_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX89073.1|684465_685884_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX91907.1|685912_686968_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX89074.1|686973_687216_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX89075.1|687338_687941_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX89076.1|688369_689320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89077.1|689337_689985_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX89078.1|689994_690246_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89079.1|690308_690791_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX89080.1|690792_690993_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89081.1|690992_691388_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX89082.1|691384_691783_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX89083.1|691779_692202_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89084.1|692209_692710_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX89085.1|692964_693483_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX89086.1|693492_693822_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX89087.1|693839_694130_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX89088.1|694155_696768_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX89089.1|696777_697137_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89090.1|697204_697738_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX89091.1|697734_698124_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX89092.1|698116_702073_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX89093.1|702077_702494_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89094.1|702712_702976_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX89095.1|702975_703788_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89096.1|703792_704035_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89097.1|704013_704565_+	lysozyme	NA	NA	NA	NA	NA
AZX89098.1|704546_705080_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX89099.1|705076_705358_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89100.1|705700_705901_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89101.1|705907_706579_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX89102.1|706934_707621_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX89103.1|707601_708174_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX89104.1|708239_709970_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX89105.1|710022_710451_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX89106.1|710453_711134_+	protein TolQ	NA	NA	NA	NA	NA
AZX89107.1|711133_711592_+	protein TolR	NA	NA	NA	NA	NA
AZX89108.1|711628_712603_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX89109.1|712619_713936_+	protein TolB	NA	NA	NA	NA	NA
AZX89110.1|713967_714465_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX89111.1|714551_715241_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX89112.1|715240_716290_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX89113.1|716286_717081_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX89114.1|717249_717600_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89115.1|717575_718133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89116.1|719057_719276_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89117.1|719262_720213_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	853046	902310	4106368	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZX89220.1|853046_853997_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91912.1|853969_854569_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89221.1|854570_855005_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX89222.1|855001_855436_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89223.1|855419_856223_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX89224.1|856239_857055_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX89225.1|857051_857867_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX89226.1|858013_858715_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89227.1|858742_860701_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX89228.1|860783_861734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89229.1|861954_862623_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX89230.1|862746_863853_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX89231.1|863865_866979_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX89232.1|866975_868469_+	RND transporter	NA	NA	NA	NA	NA
AZX89233.1|868483_869155_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX89234.1|869198_869693_-	azurin	NA	NA	NA	NA	NA
AZX89235.1|869833_870481_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX91913.1|870584_872633_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX89236.1|872629_874642_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX89237.1|874667_876002_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89238.1|876110_877103_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89239.1|877169_879254_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX89240.1|879278_880250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89241.1|880378_881380_-	peptidase M14	NA	NA	NA	NA	NA
AZX89242.1|881413_882655_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX89243.1|882735_883659_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX89244.1|883736_884561_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX91914.1|884757_885774_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX89245.1|885970_886954_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89246.1|888552_889941_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX89247.1|889971_890961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89248.1|891071_892304_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX89249.1|892585_893386_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89250.1|893408_895640_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX89251.1|896427_896874_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX89252.1|896895_897642_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX89253.1|897785_898763_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX89254.1|899396_900008_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX89255.1|900001_901219_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX89256.1|901359_902310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	911922	976862	4106368	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX89265.1|911922_912873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89266.1|912869_914720_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX89267.1|915100_915760_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX89268.1|915847_916000_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89269.1|916108_916276_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89270.1|916287_916968_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX89271.1|917249_917966_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX89272.1|917980_919282_-	phospholipase	NA	NA	NA	NA	NA
AZX89273.1|921426_924315_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX89274.1|924538_925891_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX89275.1|925919_926441_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX89276.1|926437_927892_+	carboxylase	NA	NA	NA	NA	NA
AZX89277.1|927926_928175_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89278.1|928280_929156_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89279.1|929181_930237_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89280.1|930249_931041_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89281.1|931073_932444_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX89282.1|933620_934571_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89283.1|934623_934845_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89284.1|935004_935217_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89285.1|935336_936455_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX89286.1|936551_936767_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89287.1|936960_937212_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89288.1|937324_938275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89289.1|938271_938655_-	ferredoxin	NA	NA	NA	NA	NA
AZX89290.1|938709_940527_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX91916.1|940673_941501_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX89291.1|941546_942527_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX89292.1|942523_942736_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89293.1|942732_943914_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX89294.1|944077_944812_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX89295.1|944813_947426_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX89296.1|947561_949475_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX89297.1|950090_950501_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX89298.1|950598_951684_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX89299.1|951782_952733_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89300.1|952729_953704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89301.1|953828_954740_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX89302.1|955016_955409_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX89303.1|955538_956489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89304.1|956518_956701_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX89305.1|956739_956997_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89306.1|957473_958655_-	MFS transporter	NA	NA	NA	NA	NA
AZX89307.1|958870_959548_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX89308.1|959544_960318_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX89309.1|960395_960977_-	OmpA family protein	NA	NA	NA	NA	NA
AZX89310.1|961347_964029_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX89311.1|964028_965162_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX89312.1|965154_966240_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX89313.1|966326_967226_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX89314.1|967222_968551_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX89315.1|968565_969237_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX89316.1|969409_971140_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX89317.1|971141_971501_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX89318.1|971692_972007_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX89319.1|972049_973270_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX89320.1|973266_974208_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX89321.1|974204_975194_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX89322.1|975228_975813_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX89323.1|975911_976862_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	996262	1059413	4106368	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZX89338.1|996262_997213_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89339.1|997317_998367_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX91918.1|998504_999521_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX89340.1|1001029_1001602_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX89341.1|1001661_1002393_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX91919.1|1002444_1003362_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89342.1|1004169_1007349_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX89343.1|1007345_1008728_+	multidrug transporter	NA	NA	NA	NA	NA
AZX89344.1|1008797_1009049_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX89345.1|1009194_1009845_-	SCO family protein	NA	NA	NA	NA	NA
AZX89346.1|1009995_1012110_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX89347.1|1012185_1013037_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX89348.1|1013033_1013660_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX89349.1|1013656_1015411_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX89350.1|1015703_1018409_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX89351.1|1018421_1020083_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX89352.1|1020095_1021886_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX89353.1|1022107_1023283_-	flagellin FliC	NA	NA	NA	NA	NA
AZX89354.1|1023325_1024276_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89355.1|1024374_1025115_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX89356.1|1025309_1027346_+	transketolase	NA	NA	NA	NA	NA
AZX89357.1|1027363_1028374_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX89358.1|1028491_1029685_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX89359.1|1029714_1030488_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX89360.1|1030484_1031675_-	acetate kinase	NA	NA	NA	NA	NA
AZX89361.1|1031700_1032639_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX91920.1|1032635_1034984_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX89362.1|1035138_1035846_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX89363.1|1035883_1037017_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89364.1|1037293_1037842_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX89365.1|1037860_1038346_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX89366.1|1038523_1039462_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX89367.1|1039464_1039782_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89368.1|1039827_1040772_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89369.1|1042452_1043103_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX89370.1|1043156_1043492_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89371.1|1043488_1044349_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX89372.1|1044365_1044647_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89373.1|1044720_1044984_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX89374.1|1045227_1046178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89375.1|1046476_1047214_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX89376.1|1047649_1047973_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX89377.1|1048007_1048568_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX89378.1|1048688_1049564_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX89379.1|1049576_1050524_+	motility protein MotB	NA	NA	NA	NA	NA
AZX89380.1|1050625_1050919_+	response regulator	NA	NA	NA	NA	NA
AZX89381.1|1050945_1053003_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX89382.1|1053017_1053518_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX89383.1|1053591_1055298_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX89384.1|1056161_1057214_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX89385.1|1057266_1057656_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX89386.1|1057664_1058297_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX91921.1|1058396_1059413_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1065397	1125460	4106368	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
AZX89391.1|1065397_1066825_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX91923.1|1067762_1068779_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX89392.1|1069111_1070047_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX89393.1|1070096_1071977_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX89394.1|1072043_1072388_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX89395.1|1072532_1073669_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX89396.1|1073665_1074739_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX89397.1|1074896_1076333_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX91924.1|1076423_1077065_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX91925.1|1077400_1078417_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX89398.1|1080293_1080473_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91926.1|1080459_1081410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91927.1|1082612_1084034_-	siroheme synthase	NA	NA	NA	NA	NA
AZX89399.1|1084297_1085014_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89400.1|1085098_1085416_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX89401.1|1085456_1085870_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX89402.1|1085871_1086231_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89403.1|1086273_1087818_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX89404.1|1087901_1088732_+	transglycosylase	NA	NA	NA	NA	NA
AZX89405.1|1088766_1089921_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX89406.1|1089963_1090836_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89407.1|1090952_1093241_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX89408.1|1094447_1094912_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX89409.1|1094938_1095889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91928.1|1096256_1097033_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX89410.1|1097077_1097935_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX89411.1|1097956_1098973_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX89412.1|1099107_1100148_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX89413.1|1100342_1102424_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX89414.1|1102659_1104153_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX89415.1|1104383_1105178_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX89416.1|1105398_1106757_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX89417.1|1106753_1107596_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX89418.1|1107614_1109501_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX89419.1|1109738_1110371_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX89420.1|1110389_1110992_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89421.1|1111143_1112094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89422.1|1112896_1113697_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89423.1|1113740_1114727_-	homoserine kinase	NA	NA	NA	NA	NA
AZX89424.1|1114866_1115880_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX89425.1|1115876_1116827_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89426.1|1116939_1117398_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX89427.1|1117434_1118748_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89428.1|1118765_1119137_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX89429.1|1119133_1120597_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX89430.1|1120689_1121466_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX89431.1|1121447_1124327_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX89432.1|1124509_1125460_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1156526	1218697	4106368	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
AZX89454.1|1156526_1157477_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX89455.1|1157575_1158208_-	fimbrial protein	NA	NA	NA	NA	NA
AZX89456.1|1158372_1160655_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX89457.1|1160809_1163506_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX89458.1|1163631_1164120_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX89459.1|1166530_1169401_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX89460.1|1169446_1170661_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX89461.1|1170890_1172318_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX89462.1|1172358_1173507_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZX89463.1|1173519_1174278_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89464.1|1174365_1175268_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89465.1|1175264_1176215_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89466.1|1176344_1177328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89467.1|1177382_1178105_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX89468.1|1179583_1180939_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZX89469.1|1181019_1183395_-	protein tex	NA	NA	NA	NA	NA
AZX89470.1|1183559_1185635_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZX89471.1|1185696_1186497_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZX89472.1|1186598_1187561_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZX89473.1|1187548_1188304_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZX89474.1|1188411_1190049_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZX89475.1|1190116_1190854_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX89476.1|1190956_1191532_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZX89477.1|1191704_1192241_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89478.1|1192243_1192588_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZX89479.1|1192603_1193449_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZX89480.1|1193487_1194867_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZX89481.1|1194944_1195826_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX89482.1|1195924_1196875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89483.1|1196871_1197282_-	VOC family protein	NA	NA	NA	NA	NA
AZX89484.1|1197389_1198244_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZX89485.1|1198236_1199199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89486.1|1199244_1200369_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZX91930.1|1200480_1201353_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89487.1|1201477_1202257_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX89488.1|1202410_1203832_+	MFS transporter	NA	NA	NA	NA	NA
AZX89489.1|1204266_1205964_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZX89490.1|1205992_1206115_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91931.1|1206190_1207132_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZX89491.1|1207458_1208205_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89492.1|1208212_1209139_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89493.1|1209260_1210178_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89494.1|1210217_1211171_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89495.1|1211195_1211774_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZX89496.1|1213447_1214056_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91932.1|1214133_1214487_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89497.1|1214570_1215560_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX89498.1|1215762_1216713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89499.1|1216799_1217750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89500.1|1217746_1218697_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1269624	1326835	4106368	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX89537.1|1269624_1270575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89538.1|1274321_1274933_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX89539.1|1275155_1276616_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX89540.1|1276712_1278305_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX89541.1|1278291_1278570_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89542.1|1278628_1278916_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX89543.1|1278917_1280258_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX89544.1|1280353_1281043_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89545.1|1281055_1282486_+	MFS transporter	NA	NA	NA	NA	NA
AZX89546.1|1284210_1285032_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89547.1|1285042_1286614_+	amidohydrolase	NA	NA	NA	NA	NA
AZX89548.1|1286642_1287620_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX89549.1|1287646_1288450_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX89550.1|1288446_1289241_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX89551.1|1289248_1290484_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX89552.1|1290476_1290911_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX89553.1|1291660_1292611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89554.1|1293232_1294960_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX89555.1|1295071_1296430_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX89556.1|1296550_1296736_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89557.1|1296722_1297673_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89558.1|1297713_1298784_+	FUSC family protein	NA	NA	NA	NA	NA
AZX91934.1|1298806_1299685_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX89559.1|1299856_1300828_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX89560.1|1300990_1301833_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89561.1|1301994_1302675_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX89562.1|1302668_1303838_+	amine oxidase	NA	NA	NA	NA	NA
AZX89563.1|1303834_1304866_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX89564.1|1304909_1306151_+	MFS transporter	NA	NA	NA	NA	NA
AZX89565.1|1306185_1307718_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX89566.1|1307798_1308422_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX89567.1|1308452_1309064_+	LysE family translocator	NA	NA	NA	NA	NA
AZX89568.1|1309099_1309570_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX89569.1|1310001_1311006_+	peptidase M20	NA	NA	NA	NA	NA
AZX89570.1|1311042_1312557_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX89571.1|1312560_1313520_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX89572.1|1313548_1314352_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX89573.1|1314353_1315988_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX89574.1|1316071_1317133_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX89575.1|1317331_1317601_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89576.1|1317604_1318129_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX89577.1|1318544_1319495_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89578.1|1319491_1320562_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX89579.1|1320634_1321273_+	DedA family protein	NA	NA	NA	NA	NA
AZX89580.1|1321567_1321795_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX89581.1|1321917_1322631_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX89582.1|1322875_1323826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89583.1|1323929_1324211_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89584.1|1324325_1325774_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX89585.1|1325884_1326835_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1417066	1470246	4106368	transposase,tRNA	Salmonella_phage(22.22%)	46	NA	NA
AZX89664.1|1417066_1418017_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89665.1|1418183_1418537_+	cytochrome C	NA	NA	NA	NA	NA
AZX89666.1|1418549_1418912_+	cytochrome	NA	NA	NA	NA	NA
AZX89667.1|1418953_1419379_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX89668.1|1419581_1420838_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX89669.1|1421036_1422017_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89670.1|1422166_1423408_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89671.1|1423506_1424457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89672.1|1424465_1425161_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX89673.1|1427982_1428582_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX89674.1|1428592_1430758_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX89675.1|1430781_1432566_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX89676.1|1432565_1432655_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX89677.1|1433349_1433622_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX89678.1|1433621_1435688_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX89679.1|1435684_1436635_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89680.1|1436750_1437083_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX89681.1|1437079_1437766_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX89682.1|1437752_1438712_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX91943.1|1438753_1441114_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX89683.1|1441113_1441746_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX89684.1|1441808_1443188_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX89685.1|1443234_1444590_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX89686.1|1444868_1445117_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89687.1|1445304_1445622_-	virulence factor	NA	NA	NA	NA	NA
AZX89688.1|1445894_1446410_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX89689.1|1446503_1446665_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89690.1|1446680_1447436_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX89691.1|1447774_1447981_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89692.1|1447988_1448648_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX89693.1|1448942_1451147_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX89694.1|1451257_1452481_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX89695.1|1452603_1453578_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX89696.1|1453645_1454839_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX89697.1|1454853_1455654_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX89698.1|1455650_1457507_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX89699.1|1457503_1458109_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX89700.1|1458127_1459513_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX89701.1|1460238_1461465_+	transporter	NA	NA	NA	NA	NA
AZX89702.1|1461553_1462336_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX89703.1|1462434_1463385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89704.1|1463411_1464185_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX89705.1|1464196_1465438_+	MFS transporter	NA	NA	NA	NA	NA
AZX89706.1|1467219_1468170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89707.1|1468201_1469299_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX89708.1|1469295_1470246_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1512095	1570958	4106368	protease,transposase,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZX91944.1|1512095_1512584_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX89754.1|1512701_1513280_+|protease	protease	protease	NA	NA	NA	NA
AZX89755.1|1513352_1513754_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX89756.1|1513852_1514803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89757.1|1514809_1515922_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX89758.1|1516608_1517811_+	MFS transporter	NA	NA	NA	NA	NA
AZX89759.1|1518014_1520675_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89760.1|1520687_1524092_+	nuclease	NA	NA	NA	NA	NA
AZX89761.1|1524759_1526985_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX89762.1|1527031_1527358_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX89763.1|1527408_1528017_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX89764.1|1528115_1529066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89765.1|1529135_1529900_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX89766.1|1529896_1530496_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91945.1|1530599_1531445_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX89767.1|1531510_1532137_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX89768.1|1532133_1533084_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89769.1|1533070_1533259_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89770.1|1533182_1534304_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX89771.1|1534284_1535286_-	aminopeptidase	NA	NA	NA	NA	NA
AZX89772.1|1535391_1536903_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX89773.1|1536899_1538204_-	peptidase	NA	NA	NA	NA	NA
AZX89774.1|1538315_1538876_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX89775.1|1539143_1539698_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX89776.1|1540153_1540369_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX91946.1|1540623_1543221_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX89777.1|1543217_1544405_+	cupin	NA	NA	NA	NA	NA
AZX89778.1|1545063_1545678_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZX89779.1|1545766_1546894_-	lipoprotein	NA	NA	NA	NA	NA
AZX89780.1|1546905_1547811_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX89781.1|1548703_1549654_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89782.1|1549835_1550588_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX89783.1|1550656_1551316_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX89784.1|1551312_1552041_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX89785.1|1552053_1554333_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX89786.1|1554357_1554561_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX89787.1|1554602_1555250_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX89788.1|1555370_1556288_-	cytochrome C	NA	NA	NA	NA	NA
AZX89789.1|1556284_1556998_-	cytochrome C	NA	NA	NA	NA	NA
AZX89790.1|1557235_1558006_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89791.1|1558010_1558610_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX89792.1|1558854_1560345_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX89793.1|1560403_1560688_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX89794.1|1560684_1560813_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89795.1|1560825_1560981_-	hypothetical protein	NA	NA	NA	NA	NA
AZX89796.1|1561253_1562180_-	YicC family protein	NA	NA	NA	NA	NA
AZX89797.1|1562316_1563057_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX89798.1|1563223_1564600_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX89799.1|1564781_1565687_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX89800.1|1565721_1567461_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX89801.1|1567338_1569141_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX89802.1|1569258_1569909_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX89803.1|1570007_1570958_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1616130	1671721	4106368	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX89834.1|1616130_1617081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89835.1|1617139_1617913_+	oxidoreductase	NA	NA	NA	NA	NA
AZX89836.1|1617905_1619462_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX89837.1|1619458_1620409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89838.1|1621735_1622338_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89839.1|1622577_1623279_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX89840.1|1623272_1624055_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX89841.1|1624239_1625190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89842.1|1625288_1626026_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX89843.1|1626215_1626974_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89844.1|1627020_1628010_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89845.1|1628187_1629156_-	transporter	NA	NA	NA	NA	NA
AZX89846.1|1630695_1631664_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX89847.1|1631672_1632614_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX89848.1|1633087_1634098_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91950.1|1634088_1635603_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX89849.1|1635599_1636946_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91951.1|1636948_1637983_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX89850.1|1638032_1639658_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX89851.1|1640210_1641161_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89852.1|1641265_1642213_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91952.1|1642266_1644081_-	histidine kinase	NA	NA	NA	NA	NA
AZX89853.1|1644073_1644748_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX89854.1|1644877_1647952_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX89855.1|1647965_1648265_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX91953.1|1648579_1649203_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX89856.1|1649446_1650316_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX89857.1|1650293_1651238_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91954.1|1651323_1652295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX91955.1|1652362_1653136_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89858.1|1653132_1654329_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX89859.1|1654359_1655310_-	hydrolase	NA	NA	NA	NA	NA
AZX89860.1|1655531_1656221_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX89861.1|1656285_1657041_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89862.1|1657092_1658085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89863.1|1658094_1659048_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89864.1|1659163_1660126_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89865.1|1661527_1661956_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89866.1|1661952_1662903_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91956.1|1663196_1663919_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX89867.1|1664357_1665545_-	MFS transporter	NA	NA	NA	NA	NA
AZX89868.1|1665548_1665929_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89869.1|1667648_1668620_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX89870.1|1668633_1669347_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX89871.1|1669351_1670269_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89872.1|1670375_1670672_+	hypothetical protein	NA	NA	NA	NA	NA
AZX89873.1|1670770_1671721_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1829487	1888757	4106368	protease,transposase,tRNA	Klosneuvirus(40.0%)	49	NA	NA
AZX89992.1|1829487_1830438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89993.1|1830562_1831372_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX89994.1|1831572_1832523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX89995.1|1833796_1835014_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZX89996.1|1836070_1836973_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX89997.1|1837049_1837922_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX89998.1|1838052_1838421_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZX89999.1|1838478_1839525_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZX90000.1|1839720_1840977_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX90001.1|1840981_1842319_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90002.1|1842468_1843425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90003.1|1844897_1845248_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90004.1|1845295_1846870_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90005.1|1846922_1847867_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX90006.1|1847884_1848715_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX90007.1|1848707_1850342_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZX90008.1|1850338_1851694_+	amidase	NA	NA	NA	NA	NA
AZX90009.1|1852600_1854178_+	lipoprotein	NA	NA	NA	NA	NA
AZX90010.1|1854181_1855456_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91962.1|1855553_1855928_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90011.1|1857643_1858777_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZX90012.1|1858814_1859420_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZX90013.1|1859416_1860235_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90014.1|1860306_1862931_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX90015.1|1862917_1863172_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX90016.1|1863238_1863820_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90017.1|1864123_1864384_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX90018.1|1864549_1865173_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX90019.1|1865172_1865946_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX90020.1|1865942_1867151_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX90021.1|1867176_1867650_-	RidA family protein	NA	NA	NA	NA	NA
AZX90022.1|1867723_1868674_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90023.1|1868772_1869723_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90024.1|1869821_1871171_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX90025.1|1871936_1872692_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX90026.1|1872784_1875667_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX90027.1|1875989_1876415_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX90028.1|1876442_1877591_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX90029.1|1877587_1878094_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX90030.1|1878100_1879396_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX90031.1|1879436_1880741_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX90032.1|1880742_1881381_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90033.1|1881383_1882544_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX90034.1|1882570_1883926_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX90035.1|1883929_1885000_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX90036.1|1885138_1885375_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX90037.1|1885462_1886569_+	GTPase HflX	NA	NA	NA	NA	NA
AZX90038.1|1886534_1887839_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX90039.1|1887857_1888757_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1898997	1944369	4106368	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
AZX90047.1|1898997_1899948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90048.1|1900046_1900997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90049.1|1900983_1901184_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90050.1|1901196_1902282_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZX90051.1|1902297_1903059_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX90052.1|1903055_1903979_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZX90053.1|1904077_1904602_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX90054.1|1904610_1905354_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZX90055.1|1905449_1905689_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90056.1|1905702_1905855_-	lipoprotein	NA	NA	NA	NA	NA
AZX90057.1|1905940_1907431_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZX90058.1|1907522_1908461_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZX90059.1|1908457_1908634_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZX90060.1|1908636_1909299_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZX91964.1|1910920_1911064_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZX90061.1|1911060_1912035_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90062.1|1912201_1913152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90063.1|1913148_1914423_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX90064.1|1914520_1915720_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX90065.1|1915716_1916370_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX90066.1|1916366_1917803_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX90067.1|1917790_1918150_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX90068.1|1919122_1920073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90069.1|1921118_1922984_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX91965.1|1923241_1924762_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX90070.1|1924849_1925500_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZX90071.1|1926448_1927744_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX90072.1|1927765_1928650_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91966.1|1928748_1929624_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX90073.1|1929613_1929970_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX90074.1|1930043_1931075_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX90075.1|1931204_1931384_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX90076.1|1931481_1932006_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX90077.1|1932016_1932853_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX90078.1|1932965_1933337_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX90079.1|1933333_1933885_+	ATPase	NA	NA	NA	NA	NA
AZX90080.1|1933900_1935592_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX90081.1|1935640_1936321_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90082.1|1936568_1937033_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90083.1|1937202_1938132_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX90084.1|1938144_1938792_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90085.1|1938865_1940683_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX90086.1|1940766_1941717_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90087.1|1941815_1942766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90088.1|1943418_1944369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	1974142	2038511	4106368	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZX90116.1|1974142_1975093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90117.1|1975079_1975271_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90118.1|1975314_1976265_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90119.1|1976363_1977329_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX90120.1|1977466_1978366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90121.1|1980960_1982448_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90122.1|1982458_1983655_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX90123.1|1983727_1985047_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX90124.1|1985043_1985919_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX90125.1|1985949_1987119_-	CoA transferase	NA	NA	NA	NA	NA
AZX90126.1|1987115_1987430_-	ferredoxin	NA	NA	NA	NA	NA
AZX90127.1|1987451_1988174_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX90128.1|1988173_1988992_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX90129.1|1988996_1989524_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX90130.1|1989529_1990795_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX90131.1|1991144_1992284_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90132.1|1992361_1993234_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX90133.1|1994104_1995055_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90134.1|1995014_1995650_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90135.1|1996009_1997332_-	isocitrate lyase	NA	NA	NA	NA	NA
AZX90136.1|1997560_1998472_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX90137.1|1999896_2000469_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX90138.1|2000508_2002338_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZX90139.1|2002300_2003359_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX90140.1|2003396_2003858_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZX90141.1|2003942_2004689_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX90142.1|2006179_2009410_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX90143.1|2009476_2010808_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX90144.1|2011060_2011435_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX90145.1|2011537_2012716_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90146.1|2012726_2013317_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX91970.1|2013427_2014234_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX90147.1|2014259_2015054_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX90148.1|2016054_2017029_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90149.1|2017187_2017700_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX90150.1|2017856_2018828_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX90151.1|2020572_2021379_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX91971.1|2021375_2022512_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX90152.1|2022627_2023392_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90153.1|2023505_2024276_-	spermidine synthase	NA	NA	NA	NA	NA
AZX90154.1|2024360_2025572_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX90155.1|2025620_2025995_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX90156.1|2026095_2027358_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX90157.1|2027354_2028212_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX90158.1|2028384_2029386_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90159.1|2029837_2030788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90160.1|2032303_2033503_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX90161.1|2033871_2034108_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX90162.1|2034171_2034339_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX90163.1|2034452_2036348_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX90164.1|2036511_2037462_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90165.1|2037560_2038511_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	2131666	2195756	4106368	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
AZX90238.1|2131666_2132935_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90239.1|2133505_2133718_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90240.1|2133735_2134467_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90241.1|2134501_2135143_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX90242.1|2135135_2135852_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX90243.1|2138016_2138793_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX90244.1|2138814_2139972_-	thiolase	NA	NA	NA	NA	NA
AZX90245.1|2139968_2140400_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90246.1|2140396_2141200_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX90247.1|2141213_2141669_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX90248.1|2141681_2142653_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX90249.1|2142718_2143942_-	CoA transferase	NA	NA	NA	NA	NA
AZX90250.1|2144169_2145120_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90251.1|2145243_2147697_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX90252.1|2147885_2149190_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX90253.1|2149294_2149948_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX90254.1|2149950_2151261_-	trigger factor	NA	NA	NA	NA	NA
AZX90255.1|2151439_2152018_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX90256.1|2152129_2152330_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX90257.1|2152675_2153242_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX90258.1|2153325_2153529_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX90259.1|2153835_2154156_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90260.1|2154197_2154479_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90261.1|2154553_2155810_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX90262.1|2156192_2156522_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX90263.1|2158092_2158914_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX90264.1|2158913_2160053_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX90265.1|2160059_2160956_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX90266.1|2160952_2162878_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX90267.1|2163237_2165850_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX90268.1|2165902_2168203_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX90269.1|2168199_2169408_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX90270.1|2169669_2170044_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90271.1|2170040_2170991_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90272.1|2171089_2173084_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX90273.1|2173143_2174109_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX90274.1|2174098_2176960_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX90275.1|2176962_2177469_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX90276.1|2177573_2178782_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX90277.1|2178783_2179722_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90278.1|2179883_2180357_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX90279.1|2180353_2181304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90280.1|2181290_2181470_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90281.1|2181414_2181855_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX90282.1|2181983_2183213_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX90283.1|2183251_2184073_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX90284.1|2184126_2185278_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX90285.1|2185369_2185858_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX90286.1|2188384_2190958_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX90287.1|2191028_2193602_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX90288.1|2193867_2194068_+	CsbD family protein	NA	NA	NA	NA	NA
AZX90289.1|2194099_2194261_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX90290.1|2194318_2194657_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX90291.1|2194805_2195756_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	2211726	2269481	4106368	transposase,tRNA	Moraxella_phage(40.0%)	58	NA	NA
AZX91979.1|2211726_2212743_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX90306.1|2212840_2213881_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX90307.1|2214015_2215308_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX90308.1|2216667_2217051_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX90309.1|2217068_2217656_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX90310.1|2217693_2218644_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90311.1|2218742_2219693_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90312.1|2219791_2220352_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX90313.1|2220348_2220894_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90314.1|2221089_2222118_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90315.1|2222158_2223499_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX90316.1|2223607_2224612_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90317.1|2224718_2227319_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX90318.1|2227417_2228368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90319.1|2228466_2229417_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90320.1|2229413_2229686_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91980.1|2229944_2232656_-	autotransporter BapA	NA	NA	NA	NA	NA
AZX90321.1|2233223_2234768_+	cardiolipin synthase	NA	NA	NA	NA	NA
AZX90322.1|2234764_2235115_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AZX90323.1|2235258_2235687_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
AZX90324.1|2235770_2236934_+	alanine racemase	NA	NA	NA	NA	NA
AZX90325.1|2236930_2239372_-	MFS transporter	NA	NA	NA	NA	NA
AZX90326.1|2239456_2241478_+	regulator	NA	NA	NA	NA	NA
AZX90327.1|2241474_2242662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90328.1|2243988_2244189_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91981.1|2244225_2244924_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90329.1|2245098_2245701_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZX90330.1|2245721_2247524_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AZX90331.1|2247514_2247913_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90332.1|2247909_2248959_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AZX90333.1|2248955_2249756_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX90334.1|2249767_2250043_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX90335.1|2250039_2250711_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX91982.1|2250707_2251787_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZX90336.1|2251783_2252332_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90337.1|2252328_2252838_-	type III secretion protein	NA	NA	NA	NA	NA
AZX90338.1|2252837_2254172_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AZX90339.1|2254176_2254815_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZX90340.1|2254784_2255447_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90341.1|2255439_2256264_-	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AZX90342.1|2256260_2256668_-	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA	NA
AZX90343.1|2256664_2257186_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90344.1|2257190_2257652_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZX90345.1|2257675_2258878_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90346.1|2258907_2259849_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90347.1|2259896_2260382_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZX90348.1|2260397_2260673_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90349.1|2260694_2261312_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90350.1|2261475_2262573_+	TyeA family type III secretion system gatekeeper subunit	NA	NA	NA	NA	NA
AZX90351.1|2262569_2262947_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
AZX90352.1|2262951_2263362_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90353.1|2263358_2263727_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91983.1|2263723_2265823_+	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX90354.1|2265819_2267100_+	EscD/YscD/HrpQ family type III secretion system inner membrane ring protein	NA	NA	NA	NA	NA
AZX90355.1|2267140_2267440_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90356.1|2267429_2267696_+	type III secretion protein	NA	NA	NA	NA	NA
AZX90357.1|2267731_2268187_-	Tir chaperone family protein	NA	NA	NA	NA	NA
AZX90358.1|2268530_2269481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	2475998	2534242	4106368	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZX90525.1|2475998_2476949_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90526.1|2477428_2478085_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX90527.1|2478099_2479767_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX90528.1|2479769_2480399_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90529.1|2480610_2481705_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90530.1|2481849_2482662_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX90531.1|2482665_2484369_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX90532.1|2484419_2485550_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX90533.1|2485736_2486813_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX91990.1|2486894_2487545_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX90534.1|2487559_2488993_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX90535.1|2489246_2490065_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90536.1|2490061_2490766_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX90537.1|2491665_2492781_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90538.1|2492814_2493189_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90539.1|2493211_2494369_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX90540.1|2494381_2494615_-	lipoprotein	NA	NA	NA	NA	NA
AZX90541.1|2495249_2498219_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX90542.1|2498233_2498443_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX90543.1|2498594_2499224_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90544.1|2499220_2501338_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX90545.1|2501334_2502015_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX90546.1|2502011_2502572_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX90547.1|2502578_2503676_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX90548.1|2503813_2504422_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX90549.1|2504418_2505711_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX90550.1|2505724_2506267_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX90551.1|2506276_2507113_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX90552.1|2507146_2508208_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX90553.1|2508249_2509302_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX90554.1|2509317_2509620_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90555.1|2509761_2510712_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90556.1|2510890_2512585_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX90557.1|2512581_2513667_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX90558.1|2513714_2514614_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90559.1|2514624_2515269_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX90560.1|2516290_2519533_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX90561.1|2519543_2520641_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX90562.1|2520903_2521887_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX90563.1|2521985_2522936_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90564.1|2523034_2523985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90565.1|2523994_2524684_-	VIT family protein	NA	NA	NA	NA	NA
AZX90566.1|2524743_2525181_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX90567.1|2525226_2526120_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX90568.1|2526167_2527340_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX90569.1|2527336_2528491_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX90570.1|2528687_2529038_-	RnfH family protein	NA	NA	NA	NA	NA
AZX90571.1|2529027_2529462_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX90572.1|2529478_2530429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90573.1|2530576_2531044_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX90574.1|2531024_2532182_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX90575.1|2532247_2533174_-	paraslipin	NA	NA	NA	NA	NA
AZX90576.1|2533291_2534242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	2576520	2643020	4106368	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX90615.1|2576520_2577471_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90616.1|2577840_2578413_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX90617.1|2578415_2579426_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX90618.1|2579418_2579919_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX90619.1|2579929_2580271_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX90620.1|2580282_2581074_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX90621.1|2581090_2581360_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX90622.1|2581382_2582171_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX91994.1|2582217_2583234_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX90623.1|2583450_2584893_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX90624.1|2585071_2586691_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX90625.1|2586811_2588632_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX90626.1|2588710_2590243_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX90627.1|2590276_2591923_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX90628.1|2591992_2593015_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX90629.1|2593032_2594166_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX90630.1|2594168_2594858_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX90631.1|2594857_2595643_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX90632.1|2595686_2596451_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX90633.1|2596489_2597911_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX90634.1|2597976_2598681_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX90635.1|2598728_2599148_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX90636.1|2599160_2599568_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX91995.1|2599751_2600462_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX90637.1|2600588_2600879_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX90638.1|2600896_2601379_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX90639.1|2605884_2607039_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX91996.1|2607344_2608361_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX90640.1|2608607_2609396_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90641.1|2609462_2610143_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX90642.1|2610139_2610910_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX90643.1|2611008_2611959_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90644.1|2612014_2612932_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX90645.1|2612942_2614121_-	mandelate racemase	NA	NA	NA	NA	NA
AZX90646.1|2614140_2615136_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX90647.1|2616724_2617333_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX90648.1|2617320_2618361_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX90649.1|2618378_2619341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX90650.1|2619337_2620531_-	CoA transferase	NA	NA	NA	NA	NA
AZX90651.1|2620527_2621325_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX90652.1|2621350_2622337_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX90653.1|2622355_2624395_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX91997.1|2624596_2625277_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90654.1|2625290_2626202_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX90655.1|2626198_2626777_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX90656.1|2626915_2627821_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90657.1|2627828_2631248_+	nuclease	NA	NA	NA	NA	NA
AZX90658.1|2631235_2633836_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX90659.1|2634791_2635424_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90660.1|2635817_2636576_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90661.1|2636572_2637775_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX90662.1|2637962_2638913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90663.1|2639820_2640966_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX91998.1|2640985_2641708_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX90664.1|2641824_2642004_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90665.1|2642069_2643020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	2806625	2862189	4106368	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AZX90796.1|2806625_2807576_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90797.1|2807674_2808625_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90798.1|2808611_2808806_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90799.1|2808953_2809559_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX90800.1|2809612_2810926_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX90801.1|2811000_2811471_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX90802.1|2811470_2812259_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX90803.1|2812269_2813922_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX92011.1|2816120_2816627_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX90804.1|2816623_2817388_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX90805.1|2817403_2817688_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX90806.1|2817752_2818742_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX90807.1|2818913_2819843_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX90808.1|2819814_2820501_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX90809.1|2820534_2821080_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX90810.1|2821124_2822390_+	peptidase M48	NA	NA	NA	NA	NA
AZX90811.1|2822386_2823289_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX90812.1|2824470_2825415_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX90813.1|2825509_2827027_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90814.1|2827068_2828697_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX90815.1|2828804_2829686_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90816.1|2832798_2833173_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX90817.1|2833197_2833536_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX90818.1|2833579_2835214_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX90819.1|2835252_2836599_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX92012.1|2836706_2838128_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX90820.1|2838197_2838782_-	nitroreductase	NA	NA	NA	NA	NA
AZX90821.1|2838884_2839835_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90822.1|2839969_2841076_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90823.1|2841086_2842184_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX90824.1|2842328_2843534_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX90825.1|2843540_2844062_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX90826.1|2844058_2844550_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX90827.1|2844546_2844798_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX90828.1|2844778_2845264_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX90829.1|2845398_2848860_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90830.1|2848856_2849762_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX90831.1|2849771_2850203_-	lipoprotein	NA	NA	NA	NA	NA
AZX92013.1|2850449_2850953_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX90832.1|2850964_2852431_+	MFS transporter	NA	NA	NA	NA	NA
AZX90833.1|2852505_2853381_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92014.1|2853377_2854385_-	biotin synthase	NA	NA	NA	NA	NA
AZX90834.1|2854852_2855158_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX90835.1|2855248_2855839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92015.1|2856029_2857046_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX90836.1|2857237_2859574_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX90837.1|2859656_2860091_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX90838.1|2860189_2861140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90839.1|2861238_2862189_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	2870214	2926999	4106368	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
AZX90847.1|2870214_2871165_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90848.1|2872871_2873177_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90849.1|2873845_2874184_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX90850.1|2878736_2879339_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90851.1|2879435_2880725_+	MFS transporter	NA	NA	NA	NA	NA
AZX90852.1|2880782_2881514_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX90853.1|2881510_2882314_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX90854.1|2882310_2883399_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX90855.1|2883395_2884325_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX90856.1|2884473_2885619_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90857.1|2885640_2886591_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90858.1|2886921_2890743_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX90859.1|2890899_2891568_-	lipoprotein	NA	NA	NA	NA	NA
AZX90860.1|2891572_2893246_-	MCE family protein	NA	NA	NA	NA	NA
AZX90861.1|2893264_2894584_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX90862.1|2894588_2896940_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX92016.1|2896959_2899128_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX90863.1|2899124_2904314_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX90864.1|2904403_2904718_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX90865.1|2904945_2905191_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX90866.1|2905285_2905804_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX90867.1|2905903_2907109_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX90868.1|2907224_2908622_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX90869.1|2908738_2909317_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX90870.1|2909389_2910781_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX90871.1|2910948_2911899_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90872.1|2912179_2912800_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX90873.1|2912796_2913210_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX90874.1|2913206_2914250_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX90875.1|2914305_2914494_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90876.1|2914503_2915268_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX90877.1|2915358_2916015_+	adenylate kinase	NA	NA	NA	NA	NA
AZX90878.1|2916106_2916865_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX90879.1|2916890_2918492_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX90880.1|2918692_2919697_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX90881.1|2919797_2920061_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX90882.1|2920178_2920955_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX90883.1|2921545_2922496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90884.1|2924879_2925992_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX90885.1|2926048_2926999_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	2957385	3001076	4106368	transposase	Planktothrix_phage(33.33%)	42	NA	NA
AZX90914.1|2957385_2958336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90915.1|2958322_2958568_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90916.1|2958456_2959353_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX90917.1|2961630_2963856_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX90918.1|2964020_2965109_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX90919.1|2965065_2965719_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX90920.1|2965766_2966564_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90921.1|2967095_2968046_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90922.1|2968126_2969275_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX90923.1|2969331_2970282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90924.1|2970268_2970487_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90925.1|2970380_2970686_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX90926.1|2970714_2971149_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX90927.1|2971150_2972395_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX90928.1|2972391_2973102_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92018.1|2973116_2974028_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX90929.1|2974390_2974795_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90930.1|2974791_2975250_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90931.1|2975256_2976165_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92019.1|2976161_2977028_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX90932.1|2977014_2977842_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX90933.1|2977852_2978980_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX90934.1|2980057_2981296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90935.1|2981337_2982600_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX90936.1|2982606_2983359_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX90937.1|2983410_2983596_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92020.1|2983871_2984336_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX90938.1|2984367_2985027_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX90939.1|2985171_2987280_+	AsmA family protein	NA	NA	NA	NA	NA
AZX90940.1|2987276_2988227_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90941.1|2988330_2988951_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92021.1|2989054_2989795_+	oxidoreductase	NA	NA	NA	NA	NA
AZX90942.1|2990929_2992054_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90943.1|2992099_2992468_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90944.1|2992709_2993660_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90945.1|2994695_2995238_-	hypothetical protein	NA	NA	NA	NA	NA
AZX90946.1|2995442_2995637_+	hypothetical protein	NA	NA	NA	NA	NA
AZX90947.1|2995623_2996574_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX90948.1|2996570_2997536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX90949.1|2997605_2998442_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX90950.1|2998918_3000064_+	porin	NA	NA	NA	NA	NA
AZX90951.1|3000125_3001076_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	3234587	3269425	4106368	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZX91133.1|3234587_3235538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91134.1|3235982_3236294_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX91135.1|3236293_3236824_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91136.1|3236986_3237937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91137.1|3238226_3238691_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX91138.1|3238705_3240211_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX91139.1|3240464_3242072_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX91140.1|3242127_3243033_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX91141.1|3243473_3244424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91142.1|3244522_3245473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91143.1|3245554_3246136_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX92040.1|3246560_3246866_+	RND transporter	NA	NA	NA	NA	NA
AZX91144.1|3246879_3248214_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX91145.1|3248235_3248775_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX91146.1|3248922_3249387_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX91147.1|3249529_3250645_-	GTP-binding protein	NA	NA	NA	NA	NA
AZX91148.1|3250921_3251425_-	transcriptional repressor	NA	NA	NA	NA	NA
AZX91149.1|3251562_3251763_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91150.1|3251753_3252476_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX91151.1|3252472_3253369_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX91152.1|3253365_3254301_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX92041.1|3254306_3254930_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX91153.1|3254920_3255889_+	nickel transporter	NA	NA	NA	NA	NA
AZX91154.1|3255937_3258079_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX91155.1|3258091_3259072_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX91156.1|3259086_3259779_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX91157.1|3259805_3260717_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX91158.1|3260759_3261650_-	acyltransferase	NA	NA	NA	NA	NA
AZX91159.1|3261646_3262501_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX91160.1|3262649_3263948_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX91161.1|3264058_3264310_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX91162.1|3264389_3265430_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX91163.1|3265709_3267128_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX91164.1|3267198_3267534_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX91165.1|3267533_3268376_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX91166.1|3268474_3269425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	3281254	3332133	4106368	integrase,transposase,protease,tRNA	Planktothrix_phage(33.33%)	40	3314929:3314947	3334817:3334835
AZX91175.1|3281254_3282205_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92043.1|3282517_3283996_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX91176.1|3284002_3285112_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX91177.1|3285123_3285804_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX91178.1|3285825_3286581_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX92044.1|3286716_3287601_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX91179.1|3287688_3288270_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91180.1|3288362_3288485_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91181.1|3288530_3288830_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX92045.1|3288981_3289407_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91182.1|3291613_3292117_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX91183.1|3292132_3293083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91184.1|3293069_3293267_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91185.1|3293610_3294384_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX91186.1|3294516_3295527_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX91187.1|3295678_3297334_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX91188.1|3297388_3297730_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX91189.1|3297743_3299183_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX91190.1|3299315_3300131_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91191.1|3300149_3300338_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91192.1|3300324_3301275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91193.1|3302662_3303610_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91194.1|3303836_3304577_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91195.1|3304662_3305613_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91196.1|3307054_3308626_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX91197.1|3308958_3310812_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91198.1|3310856_3313421_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX91199.1|3313839_3314790_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3314929:3314947	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX91200.1|3317655_3318150_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX91201.1|3318166_3319117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91202.1|3319103_3319304_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91203.1|3319300_3320512_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX91204.1|3320527_3323479_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX91205.1|3323480_3326600_-	restriction endonuclease	NA	NA	NA	NA	NA
AZX92046.1|3326596_3326737_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX91206.1|3326747_3327794_-	Fic family protein	NA	NA	NA	NA	NA
AZX91207.1|3328135_3329263_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX91208.1|3329542_3330634_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX91209.1|3330706_3331489_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX91210.1|3331485_3332133_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3334817:3334835	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 28
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	3381020	3434761	4106368	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZX91247.1|3381020_3381971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91248.1|3382375_3383020_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX91249.1|3383044_3383629_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX91250.1|3383729_3384347_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX91251.1|3384349_3386065_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX91252.1|3386061_3386370_-	urease subunit beta	NA	NA	NA	NA	NA
AZX91253.1|3386386_3387022_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX91254.1|3387048_3387351_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX91255.1|3387451_3388306_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX91256.1|3388887_3389160_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX91257.1|3389577_3389985_-	GFA family protein	NA	NA	NA	NA	NA
AZX91258.1|3390354_3391149_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91259.1|3391249_3392485_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX91260.1|3392553_3393570_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX91261.1|3393566_3394958_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX91262.1|3394954_3396151_+	MFS transporter	NA	NA	NA	NA	NA
AZX91263.1|3396147_3397686_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX91264.1|3397682_3398942_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91265.1|3400882_3401833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91266.1|3402599_3403694_-	CoA transferase	NA	NA	NA	NA	NA
AZX91267.1|3403686_3405021_-	CoA ligase	NA	NA	NA	NA	NA
AZX91268.1|3404974_3405658_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91269.1|3405683_3406847_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX91270.1|3406843_3407845_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX91271.1|3407844_3408717_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX91272.1|3408713_3409463_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX91273.1|3409459_3410251_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX91274.1|3410247_3411387_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX91275.1|3411695_3412448_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX91276.1|3412481_3413264_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX91277.1|3413267_3413657_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX91278.1|3414796_3415660_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX91279.1|3415695_3416784_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91280.1|3416780_3417731_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91281.1|3417717_3418086_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91282.1|3418084_3421063_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91283.1|3421989_3422868_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX91284.1|3424816_3425767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91285.1|3425763_3426231_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX91286.1|3426273_3427044_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX91287.1|3427064_3427865_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX91288.1|3427875_3429285_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX91289.1|3429379_3430165_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX92049.1|3430404_3431421_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX91290.1|3431528_3431921_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX91291.1|3432058_3432739_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX91292.1|3432743_3433742_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX91293.1|3433810_3434761_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	3440916	3500214	4106368	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZX91297.1|3440916_3442680_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX91298.1|3442791_3443670_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX91299.1|3443782_3444598_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX91300.1|3444601_3444853_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX92050.1|3444937_3445954_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX91301.1|3446284_3446506_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91302.1|3448866_3449784_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX91303.1|3450281_3451490_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX91304.1|3451569_3453141_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX91305.1|3453258_3454194_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX91306.1|3454382_3455327_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX91307.1|3455395_3455611_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91308.1|3455894_3461612_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX91309.1|3461617_3462745_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX91310.1|3462800_3463427_+	aminotransferase	NA	NA	NA	NA	NA
AZX92051.1|3463698_3464715_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX91311.1|3464810_3465521_-	oxidoreductase	NA	NA	NA	NA	NA
AZX92052.1|3465517_3466507_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX91312.1|3466638_3468234_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX91313.1|3468236_3468974_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91314.1|3469129_3470002_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX91315.1|3470270_3471491_+	MFS transporter	NA	NA	NA	NA	NA
AZX91316.1|3471487_3472147_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX91317.1|3472218_3472851_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX91318.1|3472880_3473399_+	flavin reductase	NA	NA	NA	NA	NA
AZX91319.1|3473409_3474519_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX91320.1|3474565_3475420_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX91321.1|3475421_3476324_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91322.1|3477546_3478497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91323.1|3480251_3481241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91324.1|3481416_3482205_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX91325.1|3482201_3483233_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX91326.1|3483251_3483815_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX91327.1|3483870_3485391_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX91328.1|3485654_3486359_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX91329.1|3486366_3487104_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX91330.1|3487209_3487584_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX91331.1|3487626_3488916_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91332.1|3488912_3490082_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX91333.1|3490078_3490918_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX91334.1|3490977_3491913_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX91335.1|3491925_3492876_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91336.1|3492974_3493937_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX91337.1|3493968_3494328_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX91338.1|3494452_3495355_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX91339.1|3495356_3497129_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX91340.1|3497163_3497940_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX91341.1|3499263_3500214_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	3515152	3573225	4106368	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZX91353.1|3515152_3516103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91354.1|3516231_3517365_-	peptidase	NA	NA	NA	NA	NA
AZX91355.1|3517408_3518314_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX91356.1|3518316_3520017_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX91357.1|3520013_3520934_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX91358.1|3520941_3521919_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX91359.1|3521977_3523012_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX91360.1|3524986_3525223_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91361.1|3525349_3526213_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX91362.1|3526301_3527123_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX91363.1|3527202_3527940_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX91364.1|3527936_3528929_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX91365.1|3529042_3529705_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91366.1|3529749_3530898_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX91367.1|3533221_3534172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91368.1|3534512_3535463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91369.1|3535561_3536512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91370.1|3536808_3537306_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91371.1|3537348_3539124_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX92055.1|3539170_3539998_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX91372.1|3540004_3540739_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX91373.1|3541908_3542703_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91374.1|3542992_3543583_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX91375.1|3543616_3544945_-	amidase	NA	NA	NA	NA	NA
AZX91376.1|3545019_3546165_-	transporter	NA	NA	NA	NA	NA
AZX91377.1|3546276_3547275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91378.1|3547237_3547672_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX91379.1|3549188_3550073_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX91380.1|3550069_3551275_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX91381.1|3551271_3552132_-	endonuclease	NA	NA	NA	NA	NA
AZX91382.1|3552244_3554035_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX91383.1|3554075_3554741_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX91384.1|3554741_3555050_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX92056.1|3555215_3556502_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91385.1|3557935_3558886_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91386.1|3560837_3562052_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX91387.1|3562157_3563147_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX91388.1|3563143_3563752_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX91389.1|3563764_3564394_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX91390.1|3564390_3565011_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX91391.1|3565042_3565834_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX91392.1|3566676_3567141_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX91393.1|3567159_3568086_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX91394.1|3568139_3569426_-	cytochrome c	NA	NA	NA	NA	NA
AZX91395.1|3570356_3571229_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX91396.1|3571225_3572176_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX91397.1|3572274_3573225_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP025377	Bordetella pertussis strain I323 chromosome, complete genome	4106368	4005436	4070348	4106368	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX91785.1|4005436_4005922_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91786.1|4006140_4007121_+	protein BugT	NA	NA	NA	NA	NA
AZX91787.1|4007387_4008197_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX91788.1|4008236_4008917_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX91789.1|4008910_4009369_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX91790.1|4009380_4009743_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX91791.1|4009825_4010509_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX91792.1|4010564_4010873_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX91793.1|4010891_4011206_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX91794.1|4011202_4013677_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX91795.1|4013684_4015076_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX91796.1|4015072_4015258_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX91797.1|4015236_4015938_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX91798.1|4015934_4016756_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX92077.1|4016736_4017861_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX91799.1|4017853_4018873_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX91800.1|4019078_4020113_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX92078.1|4020213_4021005_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX91801.1|4021087_4021462_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX91802.1|4021439_4022849_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX91803.1|4022841_4024224_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX91804.1|4024558_4026163_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX91805.1|4026198_4027212_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX91806.1|4027222_4028149_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX91807.1|4028539_4029490_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91808.1|4029659_4030886_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX91809.1|4031085_4031952_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX91810.1|4031944_4032907_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX91811.1|4033007_4033958_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91812.1|4034056_4035007_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91813.1|4035105_4036056_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX91814.1|4036052_4037546_-	RND transporter	NA	NA	NA	NA	NA
AZX91815.1|4037542_4040650_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX91816.1|4040646_4043715_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX91817.1|4043711_4044962_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX91818.1|4045142_4045904_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX91819.1|4045936_4046587_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX91820.1|4046589_4047429_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX91821.1|4047669_4048413_+	hypothetical protein	NA	NA	NA	NA	NA
AZX91822.1|4048495_4048843_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX91823.1|4048940_4049783_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX91824.1|4049827_4050715_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX91825.1|4050741_4050930_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX91826.1|4051027_4052485_+	MFS transporter	NA	NA	NA	NA	NA
AZX91827.1|4052471_4053998_+	glycerol kinase	NA	NA	NA	NA	NA
AZX91828.1|4054016_4054484_-	hypothetical protein	NA	NA	NA	NA	NA
AZX91829.1|4054483_4055506_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX91830.1|4055626_4056367_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX91831.1|4056421_4057522_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX91832.1|4057523_4058714_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX91833.1|4058833_4059850_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX91834.1|4060168_4060840_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX91835.1|4060836_4061745_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX91836.1|4061956_4062604_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX91837.1|4066455_4067532_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX91838.1|4067542_4068352_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX91839.1|4068441_4069215_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX91840.1|4069397_4070348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
