The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	0	70443	4107545	protease,tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
AZX84893.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX84894.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX84895.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX84896.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX84897.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX84898.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX84899.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX84900.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX84901.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX84902.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX84903.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX84904.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX84905.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX84906.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX88283.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX84907.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84908.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX84909.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX84910.1|28313_28649_-	CoA transferase	NA	NA	NA	NA	NA
AZX84911.1|28673_29108_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84912.1|29140_30367_-	thiolase family protein	NA	NA	NA	NA	NA
AZX84913.1|30363_30861_-	dehydratase	NA	NA	NA	NA	NA
AZX88284.1|31068_31977_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84914.1|32162_33005_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX84915.1|33047_34469_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX84916.1|34624_35575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84917.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AZX84918.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX84919.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX84920.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX84921.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX84922.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX84923.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX84924.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX84925.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX84926.1|43662_44613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84927.1|45112_45748_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84928.1|45719_45956_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX84929.1|46083_46977_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84930.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX84931.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX84932.1|50140_51091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84933.1|51133_52390_+	MFS transporter	NA	NA	NA	NA	NA
AZX84934.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX84935.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX84936.1|54976_55666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX84937.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX84938.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84939.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84940.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX84941.1|60473_60893_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX84942.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84943.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84944.1|63472_64054_-|protease	protease	protease	NA	NA	NA	NA
AZX84945.1|64066_64384_-	ferredoxin	NA	NA	NA	NA	NA
AZX84946.1|64487_65546_-	oxidoreductase	NA	NA	NA	NA	NA
AZX84947.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX84948.1|67481_68663_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84949.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84950.1|70128_70443_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	232665	307009	4107545	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
AZX85105.1|232665_233616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85106.1|233612_234803_-	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AZX85107.1|234924_235689_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AZX85108.1|235775_236879_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZX85109.1|237070_238087_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX85110.1|238368_238857_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZX85111.1|240200_240881_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZX85112.1|240942_241794_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZX85113.1|241790_242666_-	thiazole synthase	NA	NA	NA	NA	NA
AZX85114.1|242691_243585_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AZX85115.1|243596_245486_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZX85116.1|245822_249596_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZX85117.1|249592_250543_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85118.1|250851_251544_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZX85119.1|251917_252418_-	SET domain-containing protein	NA	NA	NA	NA	NA
AZX85120.1|252524_253445_+	bestrophin	NA	NA	NA	NA	NA
AZX85121.1|253461_253938_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX85122.1|254031_255882_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZX85123.1|255937_256696_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX88296.1|256723_258196_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX85124.1|258230_259010_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZX85125.1|259022_259856_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX85126.1|259864_260638_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZX85127.1|260634_261699_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85128.1|261850_264478_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZX85129.1|264541_267163_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85130.1|268090_268549_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85131.1|268827_271071_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX85132.1|271267_273292_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZX85133.1|273415_274378_-	immunogenic protein	NA	NA	NA	NA	NA
AZX85134.1|274589_275729_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX85135.1|275751_276717_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX85136.1|276912_278103_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZX85137.1|278116_278362_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZX85138.1|278390_280412_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZX88297.1|280458_282066_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AZX85139.1|282166_283336_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX85140.1|286217_287168_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85141.1|287191_288250_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX85142.1|288324_288699_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85143.1|289253_290204_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85144.1|291760_292606_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX85145.1|292693_293857_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX88298.1|294275_295247_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX85146.1|295285_296713_-	amidase	NA	NA	NA	NA	NA
AZX85147.1|296832_297624_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85148.1|297742_300196_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZX85149.1|300290_301406_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZX85150.1|301402_302812_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZX85151.1|303217_303352_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZX85152.1|303447_303819_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZX85153.1|303815_304088_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZX85154.1|304136_305828_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZX85155.1|306058_307009_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	486899	607268	4107545	tRNA,transposase	Acinetobacter_phage(22.22%)	102	NA	NA
AZX85316.1|486899_489275_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX85317.1|489373_490324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85318.1|490422_491373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85319.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX85320.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX85321.1|494549_495362_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX85322.1|495398_495725_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX85323.1|495729_496290_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX85324.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX85325.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85326.1|498552_499929_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX85327.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX88307.1|502319_502709_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88308.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85328.1|503170_504121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85329.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX85330.1|505166_506039_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX85331.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
AZX85332.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX85333.1|509254_509719_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX85334.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX85335.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX85336.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX85337.1|512643_513252_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX85338.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX85339.1|514343_515558_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX85340.1|517509_518460_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88309.1|519893_521180_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85341.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX85342.1|521654_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX85343.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX85344.1|524263_525124_+	endonuclease	NA	NA	NA	NA	NA
AZX85345.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX85346.1|526322_527207_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX85347.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX85348.1|529120_530119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85349.1|530230_531376_+	transporter	NA	NA	NA	NA	NA
AZX85350.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
AZX85351.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX85352.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85353.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX88310.1|536397_537225_-	copper resistance protein B	NA	NA	NA	NA	NA
AZX85354.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX85355.1|539089_539587_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85356.1|539883_540834_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85357.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85358.1|542223_543174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85359.1|545497_546646_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX85360.1|546690_547353_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85361.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX85362.1|548455_549193_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX85363.1|549272_550094_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX85364.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX85365.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85366.1|553383_554418_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX85367.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX85368.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX85369.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX85370.1|558081_558987_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX85371.1|559030_560164_+	peptidase	NA	NA	NA	NA	NA
AZX85372.1|560292_561243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85373.1|561341_563411_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZX85374.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
AZX85375.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZX88311.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85376.1|568081_568504_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZX85377.1|568513_569914_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZX85378.1|569956_570862_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZX85379.1|570960_572502_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZX85380.1|572536_573076_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZX85381.1|573088_573559_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZX85382.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZX85383.1|574055_574937_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZX88312.1|575009_575330_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX85384.1|576181_577132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85385.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX85386.1|579266_581039_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX85387.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX85388.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX85389.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX85390.1|583519_584470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85391.1|584482_585418_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX85392.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX85393.1|586313_587483_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX85394.1|587479_588769_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85395.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX85396.1|589291_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX85397.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX85398.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX85399.1|592580_593144_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX85400.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX85401.1|594190_594979_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX85402.1|595154_596144_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85403.1|597900_598851_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85404.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85405.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX85406.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX85407.1|602998_603517_-	flavin reductase	NA	NA	NA	NA	NA
AZX85408.1|603546_604179_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX85409.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX85410.1|604906_606127_-	MFS transporter	NA	NA	NA	NA	NA
AZX85411.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	611682	675515	4107545	tRNA,transposase	Pandoravirus(12.5%)	49	NA	NA
AZX85415.1|611682_612699_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX85416.1|612970_613597_-	aminotransferase	NA	NA	NA	NA	NA
AZX85417.1|613652_614780_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX85418.1|614785_620503_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX85419.1|620786_621002_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85420.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX85421.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX85422.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85423.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX85424.1|626613_627531_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX85425.1|629891_630113_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88314.1|630443_631460_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX85426.1|631544_631796_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX85427.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX85428.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX85429.1|633717_635481_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX85430.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX85431.1|638006_639431_-	ATP-binding protein	NA	NA	NA	NA	NA
AZX85432.1|639430_640132_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX85433.1|641636_642587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85434.1|642655_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX85435.1|643658_644339_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX85436.1|644476_644869_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX85437.1|644976_645993_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX85438.1|646232_647018_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX85439.1|647112_648522_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX85440.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX85441.1|649353_650124_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX85442.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX85443.1|650630_651581_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85444.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX85445.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85446.1|658311_658680_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85447.1|658666_659617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85448.1|659613_660702_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85449.1|660737_661601_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX85450.1|662740_663130_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX85451.1|663133_663916_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX85452.1|663949_664702_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX85453.1|665010_666150_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85454.1|666146_666938_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX85455.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX85456.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX85457.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX85458.1|669550_670714_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX85459.1|670739_671423_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85460.1|671376_672711_+	CoA ligase	NA	NA	NA	NA	NA
AZX85461.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
AZX88315.1|674564_675515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	694426	771735	4107545	protease,tRNA,integrase,transposase	Bacillus_phage(20.0%)	59	741563:741581	761451:761469
AZX85479.1|694426_695377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85480.1|695475_696951_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX85481.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX85482.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX85483.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88316.1|703758_705042_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZX85484.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZX85485.1|706687_707191_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZX85486.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZX85487.1|708239_708677_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX85488.1|708800_709469_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZX85489.1|710197_711301_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX85490.1|711406_712681_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX85491.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX85492.1|713719_715090_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85493.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX85494.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZX85495.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX85496.1|719313_720468_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX85497.1|720464_721595_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX85498.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX85499.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZX85500.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85501.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX85502.1|726971_727682_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX85503.1|727678_729001_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZX85504.1|729080_731042_+	sulfatase	NA	NA	NA	NA	NA
AZX85505.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZX85506.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZX85507.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85508.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZX85509.1|735209_736889_-	oxidoreductase	NA	NA	NA	NA	NA
AZX85510.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX85511.1|738034_738862_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZX85512.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX85513.1|740743_741343_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZX85514.1|741391_742291_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX88317.1|742517_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZX85515.1|743572_744187_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZX85516.1|744264_744912_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX85517.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX85518.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX85519.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX85520.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
AZX88318.1|749660_749801_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX85521.1|749797_752917_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX85522.1|752918_755870_+	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX85523.1|755885_757097_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX85524.1|757093_757294_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85525.1|757280_758231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85526.1|758247_758742_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX85527.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85528.1|759027_760458_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX85529.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZX85530.1|761607_762558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX85531.1|762976_765541_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX85532.1|765585_767439_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85533.1|767771_769343_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX85534.1|770784_771735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1027071	1120059	4107545	transposase	Bacillus_virus(27.27%)	87	NA	NA
AZX85737.1|1027071_1028022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85738.1|1028124_1028787_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85739.1|1028889_1029300_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85740.1|1029404_1030406_+	amidase	NA	NA	NA	NA	NA
AZX85741.1|1030408_1031605_+	CoA transferase	NA	NA	NA	NA	NA
AZX85742.1|1031625_1032429_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX85743.1|1032509_1032806_+	histidine kinase	NA	NA	NA	NA	NA
AZX85744.1|1032836_1033400_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88337.1|1033440_1034298_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX85745.1|1034305_1035055_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX85746.1|1035076_1035949_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85747.1|1035977_1036757_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX85748.1|1036790_1037588_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85749.1|1039039_1040212_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX85750.1|1040242_1040635_+	RidA family protein	NA	NA	NA	NA	NA
AZX85751.1|1040628_1041489_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX85752.1|1041492_1042455_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX88338.1|1043231_1043921_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX85753.1|1044781_1045732_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85754.1|1046081_1046951_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85755.1|1047021_1047717_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX85756.1|1047706_1048216_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX85757.1|1048212_1049433_+	MFS transporter	NA	NA	NA	NA	NA
AZX85758.1|1049380_1050283_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85759.1|1051169_1052456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85760.1|1052494_1053868_+	amidase	NA	NA	NA	NA	NA
AZX85761.1|1053906_1054608_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX85762.1|1054906_1055896_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX85763.1|1055996_1056458_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX85764.1|1056473_1057022_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX85765.1|1057163_1058639_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX85766.1|1058744_1059836_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX85767.1|1059839_1060622_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX85768.1|1060631_1061420_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX85769.1|1062545_1062980_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX85770.1|1062976_1063987_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX85771.1|1064030_1064957_-	VOC family protein	NA	NA	NA	NA	NA
AZX85772.1|1065243_1065612_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX88339.1|1065828_1066779_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88340.1|1066760_1069250_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX85773.1|1069298_1069991_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX85774.1|1070063_1071263_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX85775.1|1071280_1072186_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85776.1|1072301_1073231_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX88341.1|1073256_1074603_+	MFS transporter	NA	NA	NA	NA	NA
AZX88342.1|1074630_1075380_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX85777.1|1075393_1076176_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX85778.1|1076368_1077319_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85779.1|1077380_1078526_-	porin	NA	NA	NA	NA	NA
AZX85780.1|1079002_1079839_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX85781.1|1079908_1080874_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85782.1|1080870_1081821_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85783.1|1081807_1082002_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85784.1|1082206_1082749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85785.1|1083784_1084735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85786.1|1084976_1085345_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85787.1|1085390_1086515_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88343.1|1087649_1088390_-	oxidoreductase	NA	NA	NA	NA	NA
AZX85788.1|1088493_1089114_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85789.1|1089217_1090168_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85790.1|1090164_1092273_-	AsmA family protein	NA	NA	NA	NA	NA
AZX85791.1|1092417_1093077_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX85792.1|1093108_1093573_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX85793.1|1093848_1094034_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85794.1|1094085_1094838_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX85795.1|1094844_1096107_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85796.1|1096148_1097387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85797.1|1098464_1099592_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX85798.1|1099602_1100430_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX85799.1|1100416_1101283_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX85800.1|1102649_1103054_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88344.1|1103416_1104328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX85801.1|1104342_1105053_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85802.1|1105049_1106294_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX85803.1|1106295_1106730_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX85804.1|1106758_1107064_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX85805.1|1106957_1107176_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85806.1|1107162_1108113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85807.1|1108169_1109318_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX85808.1|1109398_1110349_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85809.1|1110880_1111678_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85810.1|1111725_1112379_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX85811.1|1112335_1113424_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX85812.1|1113588_1115814_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX85813.1|1118091_1118988_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX85814.1|1118876_1119122_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85815.1|1119108_1120059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1150445	1221415	4107545	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX85844.1|1150445_1151396_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85845.1|1151452_1152565_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX85846.1|1154948_1155899_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85847.1|1156489_1157266_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX85848.1|1157383_1157647_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX85849.1|1157747_1158752_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX85850.1|1158952_1160554_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX85851.1|1160579_1161338_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX85852.1|1161429_1162086_-	adenylate kinase	NA	NA	NA	NA	NA
AZX85853.1|1162176_1162941_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX85854.1|1162950_1163139_-	hypothetical protein	NA	NA	NA	NA	NA
AZX85855.1|1163194_1164238_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX85856.1|1164234_1164648_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX85857.1|1164644_1165265_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX85858.1|1165545_1166496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85859.1|1166663_1168055_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX85860.1|1168127_1168706_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX85861.1|1168822_1170220_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX85862.1|1170335_1171541_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX85863.1|1171640_1172159_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX85864.1|1172253_1172499_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX85865.1|1172726_1173041_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX85866.1|1173130_1178320_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX88346.1|1178316_1180485_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX85867.1|1180504_1182856_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX85868.1|1182860_1184180_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX85869.1|1184198_1185872_+	MCE family protein	NA	NA	NA	NA	NA
AZX85870.1|1185876_1186545_+	lipoprotein	NA	NA	NA	NA	NA
AZX85871.1|1186701_1190523_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX85872.1|1190853_1191804_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85873.1|1191825_1192971_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85874.1|1193119_1194049_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX85875.1|1194045_1195134_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX85876.1|1195130_1195934_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX85877.1|1195930_1196662_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX85878.1|1196719_1198009_-	MFS transporter	NA	NA	NA	NA	NA
AZX85879.1|1198105_1198708_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85880.1|1203260_1203599_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX85881.1|1204267_1204573_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85882.1|1206279_1207230_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85883.1|1207226_1208558_-	MFS transporter	NA	NA	NA	NA	NA
AZX85884.1|1209797_1211819_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX85885.1|1211811_1212453_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX85886.1|1212449_1212857_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX85887.1|1212853_1213654_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX85888.1|1213728_1214433_+	oxidoreductase	NA	NA	NA	NA	NA
AZX85889.1|1214464_1215259_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX85890.1|1215255_1216206_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85891.1|1216304_1217255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85892.1|1217353_1217788_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX85893.1|1217870_1220207_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX88347.1|1220398_1221415_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1321635	1378846	4107545	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX85971.1|1321635_1322586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85972.1|1326332_1326944_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX85973.1|1327166_1328627_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX85974.1|1328723_1330316_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX85975.1|1330302_1330581_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85976.1|1330639_1330927_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX85977.1|1330928_1332269_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX85978.1|1332364_1333054_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85979.1|1333066_1334497_+	MFS transporter	NA	NA	NA	NA	NA
AZX85980.1|1336221_1337043_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85981.1|1337053_1338625_+	amidohydrolase	NA	NA	NA	NA	NA
AZX85982.1|1338653_1339631_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX85983.1|1339657_1340461_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX85984.1|1340457_1341252_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX85985.1|1341259_1342495_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX85986.1|1342487_1342922_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX85987.1|1343671_1344622_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85988.1|1345243_1346971_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX85989.1|1347082_1348441_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX85990.1|1348561_1348747_+	hypothetical protein	NA	NA	NA	NA	NA
AZX85991.1|1348733_1349684_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX85992.1|1349724_1350795_+	FUSC family protein	NA	NA	NA	NA	NA
AZX88353.1|1350817_1351696_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX85993.1|1351867_1352839_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX85994.1|1353001_1353844_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX85995.1|1354005_1354686_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX85996.1|1354679_1355849_+	amine oxidase	NA	NA	NA	NA	NA
AZX85997.1|1355845_1356877_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX85998.1|1356920_1358162_+	MFS transporter	NA	NA	NA	NA	NA
AZX85999.1|1358196_1359729_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX86000.1|1359809_1360433_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX86001.1|1360463_1361075_+	LysE family translocator	NA	NA	NA	NA	NA
AZX86002.1|1361110_1361581_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX86003.1|1362012_1363017_+	peptidase M20	NA	NA	NA	NA	NA
AZX86004.1|1363053_1364568_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86005.1|1364571_1365531_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX86006.1|1365559_1366363_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX86007.1|1366364_1367999_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX86008.1|1368082_1369144_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX86009.1|1369342_1369612_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86010.1|1369615_1370140_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX86011.1|1370555_1371506_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86012.1|1371502_1372573_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX86013.1|1372645_1373284_+	DedA family protein	NA	NA	NA	NA	NA
AZX86014.1|1373578_1373806_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX86015.1|1373928_1374642_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX86016.1|1374886_1375837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86017.1|1375940_1376222_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86018.1|1376336_1377785_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX86019.1|1377895_1378846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1469075	1521228	4107545	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
AZX86100.1|1469075_1470026_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86101.1|1470192_1470546_+	cytochrome C	NA	NA	NA	NA	NA
AZX86102.1|1470558_1470921_+	cytochrome	NA	NA	NA	NA	NA
AZX86103.1|1470962_1471388_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX86104.1|1471590_1472847_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX86105.1|1473045_1474026_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86106.1|1474175_1475417_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86107.1|1475515_1476466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86108.1|1476474_1477170_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX86109.1|1479991_1480591_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX86110.1|1480601_1482767_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX86111.1|1482790_1484575_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX86112.1|1484574_1484664_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX86113.1|1485358_1485631_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX86114.1|1485630_1487697_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX86115.1|1487693_1488644_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86116.1|1488742_1489693_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86117.1|1489808_1490141_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX86118.1|1490137_1490824_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX86119.1|1490810_1491770_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX88361.1|1491811_1494172_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX86120.1|1494171_1494804_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX86121.1|1494866_1496246_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX86122.1|1496292_1497648_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX86123.1|1497926_1498175_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86124.1|1498362_1498680_-	virulence factor	NA	NA	NA	NA	NA
AZX86125.1|1498952_1499468_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX86126.1|1499561_1499723_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86127.1|1499738_1500494_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX86128.1|1500832_1501039_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86129.1|1501046_1501706_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX86130.1|1502000_1504205_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX86131.1|1504315_1505539_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX86132.1|1505661_1506636_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX86133.1|1506703_1507897_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX86134.1|1507911_1508712_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX86135.1|1508708_1510565_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX86136.1|1510561_1511167_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX86137.1|1511185_1512571_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX86138.1|1513296_1514523_+	transporter	NA	NA	NA	NA	NA
AZX86139.1|1514611_1515394_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX86140.1|1515492_1516443_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86141.1|1516469_1517243_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX86142.1|1517254_1518496_+	MFS transporter	NA	NA	NA	NA	NA
AZX86143.1|1520277_1521228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1565152	1624014	4107545	protease,tRNA,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZX88362.1|1565152_1565641_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX86191.1|1565758_1566337_+|protease	protease	protease	NA	NA	NA	NA
AZX86192.1|1566409_1566811_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX86193.1|1566909_1567860_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86194.1|1567866_1568979_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX86195.1|1569665_1570868_+	MFS transporter	NA	NA	NA	NA	NA
AZX86196.1|1571071_1573732_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86197.1|1573744_1577149_+	nuclease	NA	NA	NA	NA	NA
AZX86198.1|1577816_1580042_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX86199.1|1580088_1580415_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX86200.1|1580465_1581074_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX86201.1|1581172_1582123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86202.1|1582192_1582957_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX86203.1|1582953_1583553_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88363.1|1583656_1584502_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX86204.1|1584567_1585194_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX86205.1|1585190_1586141_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86206.1|1586127_1586316_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86207.1|1586239_1587361_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX86208.1|1587341_1588343_-	aminopeptidase	NA	NA	NA	NA	NA
AZX86209.1|1588448_1589960_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX86210.1|1589956_1591261_-	peptidase	NA	NA	NA	NA	NA
AZX86211.1|1591372_1591933_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX86212.1|1592200_1592755_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX86213.1|1593210_1593426_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX88364.1|1593680_1596278_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX86214.1|1596274_1597462_+	cupin	NA	NA	NA	NA	NA
AZX86215.1|1598119_1598734_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZX86216.1|1598822_1599950_-	lipoprotein	NA	NA	NA	NA	NA
AZX86217.1|1599961_1600867_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX86218.1|1601759_1602710_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86219.1|1602891_1603644_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX86220.1|1603712_1604372_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX86221.1|1604368_1605097_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX86222.1|1605109_1607389_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX86223.1|1607413_1607617_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX86224.1|1607658_1608306_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX86225.1|1608426_1609344_-	cytochrome C	NA	NA	NA	NA	NA
AZX86226.1|1609340_1610054_-	cytochrome C	NA	NA	NA	NA	NA
AZX86227.1|1610291_1611062_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX86228.1|1611066_1611666_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX86229.1|1611910_1613401_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX86230.1|1613459_1613744_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX86231.1|1613740_1613869_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86232.1|1613881_1614037_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86233.1|1614309_1615236_-	YicC family protein	NA	NA	NA	NA	NA
AZX86234.1|1615372_1616113_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX86235.1|1616279_1617656_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX86236.1|1617837_1618743_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX86237.1|1618777_1620517_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX86238.1|1620394_1622197_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX86239.1|1622314_1622965_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX86240.1|1623063_1624014_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1669186	1724777	4107545	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX86271.1|1669186_1670137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86272.1|1670195_1670969_+	oxidoreductase	NA	NA	NA	NA	NA
AZX86273.1|1670961_1672518_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX86274.1|1672514_1673465_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86275.1|1674791_1675394_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86276.1|1675633_1676335_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX86277.1|1676328_1677111_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX86278.1|1677295_1678246_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86279.1|1678344_1679082_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX86280.1|1679271_1680030_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX86281.1|1680076_1681066_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX86282.1|1681243_1682212_-	transporter	NA	NA	NA	NA	NA
AZX86283.1|1683751_1684720_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX86284.1|1684728_1685670_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX86285.1|1686143_1687154_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88368.1|1687144_1688659_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX86286.1|1688655_1690002_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88369.1|1690004_1691039_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX86287.1|1691088_1692714_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX86288.1|1693266_1694217_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86289.1|1694321_1695269_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88370.1|1695322_1697137_-	histidine kinase	NA	NA	NA	NA	NA
AZX86290.1|1697129_1697804_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX86291.1|1697933_1701008_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX86292.1|1701021_1701321_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX88371.1|1701635_1702259_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX86293.1|1702502_1703372_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX86294.1|1703349_1704294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88372.1|1704379_1705351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88373.1|1705418_1706192_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX86295.1|1706188_1707385_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX86296.1|1707415_1708366_-	hydrolase	NA	NA	NA	NA	NA
AZX86297.1|1708587_1709277_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX86298.1|1709341_1710097_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX86299.1|1710148_1711141_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX86300.1|1711150_1712104_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88374.1|1712219_1713182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX86301.1|1714583_1715012_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86302.1|1715008_1715959_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88375.1|1716252_1716975_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX86303.1|1717413_1718601_-	MFS transporter	NA	NA	NA	NA	NA
AZX86304.1|1718604_1718985_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86305.1|1720704_1721676_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX86306.1|1721689_1722403_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX86307.1|1722407_1723325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86308.1|1723431_1723728_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86309.1|1723826_1724777_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1732073	1778454	4107545	tRNA,transposase	Pandoravirus(14.29%)	39	NA	NA
AZX86316.1|1732073_1733024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86317.1|1733067_1733610_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86318.1|1733707_1734556_+	hydrolase	NA	NA	NA	NA	NA
AZX86319.1|1734548_1735055_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX86320.1|1735051_1736053_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX86321.1|1736065_1736860_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX86322.1|1736908_1738810_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX86323.1|1738806_1739430_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86324.1|1739556_1740681_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86325.1|1740998_1742666_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX86326.1|1742821_1743598_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX86327.1|1743682_1744681_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86328.1|1744677_1745451_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX86329.1|1746435_1747386_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86330.1|1747484_1748435_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86331.1|1748533_1749484_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86332.1|1749507_1749972_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX86333.1|1750118_1751327_+	flavohemoprotein	NA	NA	NA	NA	NA
AZX86334.1|1751337_1751808_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX86335.1|1751926_1753216_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX86336.1|1755956_1756907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86337.1|1757005_1758022_-	folate-binding protein	NA	NA	NA	NA	NA
AZX86338.1|1758188_1759235_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX86339.1|1759231_1759858_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX86340.1|1759854_1760907_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX86341.1|1760956_1761727_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX86342.1|1761777_1762614_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86343.1|1762809_1763550_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86344.1|1763624_1764368_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86345.1|1765029_1765803_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX86346.1|1766940_1768230_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX86347.1|1769840_1771088_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX86348.1|1771097_1772807_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX86349.1|1772803_1773742_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX86350.1|1773738_1775022_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX86351.1|1775025_1775508_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX86352.1|1775508_1776495_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86353.1|1776667_1777387_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86354.1|1777503_1778454_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	1959640	2029292	4107545	tRNA,transposase	Staphylococcus_phage(16.67%)	57	NA	NA
AZX86487.1|1959640_1962298_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX86488.1|1962375_1963578_-	MFS transporter	NA	NA	NA	NA	NA
AZX86489.1|1963574_1964087_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88383.1|1964209_1964548_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX86490.1|1964923_1965874_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86491.1|1965972_1966923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX86492.1|1967086_1968982_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX86493.1|1969095_1969263_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX86494.1|1969326_1969563_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX86495.1|1969931_1971131_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX86496.1|1972646_1973597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86497.1|1974048_1975050_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86498.1|1975222_1976080_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX86499.1|1976076_1977339_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX86500.1|1977439_1977814_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX86501.1|1977862_1979074_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX86502.1|1979158_1979929_+	spermidine synthase	NA	NA	NA	NA	NA
AZX86503.1|1980042_1980807_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88384.1|1980922_1982059_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX86504.1|1982055_1982862_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX86505.1|1984606_1985578_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX86506.1|1985734_1986247_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX86507.1|1986405_1987380_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86508.1|1988380_1989175_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX88385.1|1989200_1990007_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX86509.1|1990117_1990708_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX86510.1|1990718_1991897_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86511.1|1991999_1992374_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX86512.1|1992626_1993958_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX86513.1|1994024_1997255_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX86514.1|1998745_1999492_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX86515.1|1999576_2000038_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX86516.1|2000075_2001134_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX86517.1|2001096_2002926_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AZX86518.1|2002965_2003538_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX86519.1|2004962_2005874_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX86520.1|2006102_2007425_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX86521.1|2007470_2007854_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86522.1|2007784_2008420_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86523.1|2008379_2009330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86524.1|2010200_2011073_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX86525.1|2011150_2012290_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86526.1|2012639_2013905_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX86527.1|2013910_2014438_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX86528.1|2014442_2015261_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX86529.1|2015260_2015983_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX86530.1|2016004_2016319_+	ferredoxin	NA	NA	NA	NA	NA
AZX86531.1|2016315_2017485_+	CoA transferase	NA	NA	NA	NA	NA
AZX86532.1|2017515_2018391_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX86533.1|2018387_2019707_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX86534.1|2019779_2020976_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX86535.1|2020986_2022474_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86536.1|2025068_2025968_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86537.1|2026105_2027071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX86538.1|2027169_2028120_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86539.1|2028163_2028355_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86540.1|2028341_2029292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2040788	2090184	4107545	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZX86552.1|2040788_2041739_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86553.1|2042876_2043173_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86554.1|2043347_2044700_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX86555.1|2044842_2045859_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX88387.1|2047838_2048852_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX86556.1|2048938_2049844_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86557.1|2050000_2050345_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86558.1|2050502_2050961_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX86559.1|2050974_2053191_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX86560.1|2053187_2054249_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86561.1|2054277_2055252_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX86562.1|2055203_2056022_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX86563.1|2056034_2056643_-	peptidase S16	NA	NA	NA	NA	NA
AZX86564.1|2056817_2057213_+	VOC family protein	NA	NA	NA	NA	NA
AZX86565.1|2057231_2058671_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX86566.1|2058699_2059047_+	GFA family protein	NA	NA	NA	NA	NA
AZX86567.1|2059065_2060016_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86568.1|2060668_2061619_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86569.1|2061702_2063520_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX86570.1|2063593_2064241_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86571.1|2064253_2065183_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX86572.1|2065352_2065817_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86573.1|2066064_2066745_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86574.1|2066793_2068485_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX86575.1|2068500_2069052_-	ATPase	NA	NA	NA	NA	NA
AZX86576.1|2069048_2069420_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX86577.1|2069532_2070369_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX86578.1|2070379_2070904_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX86579.1|2071001_2071181_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX86580.1|2071310_2072342_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX86581.1|2072415_2072772_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX88388.1|2072761_2073637_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX86582.1|2073735_2074620_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86583.1|2074641_2075937_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX86584.1|2076885_2077536_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX88389.1|2077623_2079144_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX86585.1|2079401_2081267_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX86586.1|2082312_2083263_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86587.1|2084235_2084595_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX86588.1|2084582_2086019_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX86589.1|2086015_2086669_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX86590.1|2086665_2087865_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX86591.1|2087962_2089237_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX86592.1|2089233_2090184_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2101388	2142079	4107545	protease,tRNA,transposase	Klosneuvirus(25.0%)	36	NA	NA
AZX86606.1|2101388_2102339_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86607.1|2102437_2103388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86608.1|2103347_2103761_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX86609.1|2104045_2104345_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88391.1|2104754_2106923_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX86610.1|2107722_2109753_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX86611.1|2109772_2109985_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX86612.1|2110262_2110802_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX86613.1|2110915_2112223_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX86614.1|2112287_2113445_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX86615.1|2113628_2114528_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX86616.1|2114546_2115851_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX86617.1|2115816_2116923_-	GTPase HflX	NA	NA	NA	NA	NA
AZX86618.1|2117010_2117247_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX86619.1|2117385_2118456_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX86620.1|2118459_2119815_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX86621.1|2119841_2121002_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX86622.1|2121004_2121643_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86623.1|2121644_2122949_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX86624.1|2122989_2124285_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX86625.1|2124291_2124798_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX86626.1|2124794_2125943_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX86627.1|2125970_2126396_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX86628.1|2126718_2129601_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX86629.1|2129693_2130449_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX86630.1|2131214_2132564_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX86631.1|2132662_2133613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86632.1|2133711_2134662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86633.1|2134735_2135209_+	RidA family protein	NA	NA	NA	NA	NA
AZX86634.1|2135234_2136443_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX86635.1|2136439_2137213_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX86636.1|2137212_2137836_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX86637.1|2138001_2138262_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX86638.1|2138565_2139147_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86639.1|2139213_2139468_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX86640.1|2139454_2142079_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2169862	2231067	4107545	protease,tRNA,transposase	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX86660.1|2169862_2170813_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86661.1|2171013_2171823_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX86662.1|2171947_2172898_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86663.1|2172894_2173788_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX86664.1|2173912_2174107_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX86665.1|2174106_2174448_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX86666.1|2174457_2176320_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX86667.1|2176449_2176962_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX86668.1|2176964_2177288_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX86669.1|2177289_2177700_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX86670.1|2177737_2178949_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX86671.1|2178966_2179479_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX86672.1|2179694_2180186_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX86673.1|2180438_2182475_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX86674.1|2182552_2183755_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX86675.1|2183805_2184534_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX86676.1|2186091_2187042_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86677.1|2187612_2187825_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86678.1|2187842_2188574_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86679.1|2188608_2189250_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX86680.1|2189242_2189959_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX86681.1|2192123_2192900_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX86682.1|2192921_2194079_-	thiolase	NA	NA	NA	NA	NA
AZX86683.1|2194075_2194507_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86684.1|2194503_2195307_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX86685.1|2195320_2195776_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX86686.1|2195788_2196760_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX86687.1|2196825_2198049_-	CoA transferase	NA	NA	NA	NA	NA
AZX86688.1|2198276_2199227_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86689.1|2199350_2201804_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX86690.1|2201992_2203297_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX86691.1|2203401_2204055_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX86692.1|2204057_2205368_-	trigger factor	NA	NA	NA	NA	NA
AZX86693.1|2205546_2206125_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX86694.1|2206236_2206437_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX86695.1|2206782_2207349_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX86696.1|2207432_2207636_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX86697.1|2207942_2208263_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86698.1|2208304_2208586_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86699.1|2208660_2209917_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX86700.1|2210299_2210629_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX86701.1|2212199_2213021_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX86702.1|2213020_2214160_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX86703.1|2214166_2215063_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX86704.1|2215059_2216985_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX86705.1|2217344_2219957_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX86706.1|2220009_2222310_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX86707.1|2222306_2223515_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX86708.1|2223776_2224151_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86709.1|2224147_2225098_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86710.1|2225196_2227191_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX86711.1|2227250_2228216_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX86712.1|2228205_2231067_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
>prophage 19
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2234460	2282475	4107545	tRNA,transposase	uncultured_Mediterranean_phage(16.67%)	44	NA	NA
AZX86717.1|2234460_2235411_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86718.1|2235397_2235577_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86719.1|2235521_2235962_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX86720.1|2236090_2237320_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX86721.1|2237358_2238180_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX86722.1|2238233_2239385_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX86723.1|2239476_2239965_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX86724.1|2242491_2245065_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX86725.1|2245135_2247709_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX86726.1|2247974_2248175_+	CsbD family protein	NA	NA	NA	NA	NA
AZX86727.1|2248206_2248368_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX86728.1|2248425_2248764_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX86729.1|2248912_2249863_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86730.1|2249961_2250912_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86731.1|2251010_2251730_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX88393.1|2251806_2252355_+	arylesterase	NA	NA	NA	NA	NA
AZX86732.1|2252336_2254352_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX86733.1|2254534_2255284_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX86734.1|2255296_2256160_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX86735.1|2256163_2257579_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX86736.1|2257712_2258441_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX86737.1|2258579_2258780_-	copper chaperone	NA	NA	NA	NA	NA
AZX86738.1|2258955_2259354_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX86739.1|2259377_2260778_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX88394.1|2260896_2261649_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86740.1|2261937_2262615_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86741.1|2262641_2263421_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX86742.1|2263417_2264302_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX88395.1|2264319_2265009_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX86743.1|2265083_2265842_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX86744.1|2265967_2266615_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX88396.1|2266882_2267899_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX86745.1|2267996_2269037_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX86746.1|2269171_2270464_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX86747.1|2271823_2272207_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX86748.1|2272224_2272812_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX86749.1|2272849_2273800_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86750.1|2273898_2274459_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX86751.1|2274455_2275001_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86752.1|2275196_2276225_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86753.1|2276265_2277606_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX86754.1|2277714_2278719_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86755.1|2278825_2281426_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX86756.1|2281524_2282475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2321588	2385166	4107545	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
AZX86795.1|2321588_2322539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86796.1|2322840_2323317_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZX86797.1|2323940_2325578_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZX86798.1|2325608_2326922_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZX86799.1|2327055_2327373_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86800.1|2327473_2328796_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86801.1|2328792_2329743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86802.1|2329841_2330792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86803.1|2331321_2332344_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86804.1|2332372_2333203_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZX88401.1|2333219_2334917_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX86805.1|2334981_2336058_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZX86806.1|2336217_2337081_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX86807.1|2337111_2337681_+	phosphohydrolase	NA	NA	NA	NA	NA
AZX86808.1|2337697_2338549_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX86809.1|2339606_2340488_+|protease	protease HtpX	protease	NA	NA	NA	NA
AZX86810.1|2340562_2341552_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZX86811.1|2341614_2342565_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX86812.1|2342627_2343485_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX86813.1|2343544_2344033_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86814.1|2345581_2346796_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX86815.1|2346792_2348379_+	multidrug resistance protein	NA	NA	NA	NA	NA
AZX86816.1|2348397_2349465_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZX86817.1|2349569_2351114_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZX86818.1|2351533_2353108_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86819.1|2353215_2354232_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX86820.1|2354228_2355068_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX86821.1|2355072_2356710_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZX86822.1|2356706_2357657_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86823.1|2357799_2359074_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZX86824.1|2359070_2359394_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX88402.1|2359466_2360480_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZX86825.1|2360499_2361762_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX86826.1|2361764_2362688_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX86827.1|2362684_2364178_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX86828.1|2364188_2365121_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX86829.1|2365302_2366628_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZX86830.1|2366662_2368018_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZX86831.1|2368078_2369677_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZX86832.1|2369753_2370485_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX86833.1|2370519_2371893_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZX86834.1|2371908_2372820_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZX86835.1|2372810_2373404_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZX86836.1|2373465_2373852_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZX86837.1|2373863_2374334_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZX86838.1|2374345_2374969_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZX86839.1|2374989_2377737_-	autotransporter Vag8	NA	NA	NA	NA	NA
AZX86840.1|2384013_2384229_+	hypothetical protein	NA	NA	NA	NA	NA
AZX86841.1|2384215_2385166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2530107	2588351	4107545	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AZX86964.1|2530107_2531058_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86965.1|2531537_2532194_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX86966.1|2532208_2533876_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX86967.1|2533878_2534508_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86968.1|2534719_2535814_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86969.1|2535958_2536771_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX86970.1|2536774_2538478_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX86971.1|2538528_2539659_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX86972.1|2539845_2540922_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX88407.1|2541003_2541654_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX86973.1|2541668_2543102_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX86974.1|2543355_2544174_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX86975.1|2544170_2544875_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX86976.1|2545774_2546890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86977.1|2546923_2547298_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86978.1|2547320_2548478_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX86979.1|2548490_2548724_-	lipoprotein	NA	NA	NA	NA	NA
AZX86980.1|2549358_2552328_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX86981.1|2552342_2552552_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX86982.1|2552703_2553333_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86983.1|2553329_2555447_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX86984.1|2555443_2556124_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX86985.1|2556120_2556681_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX86986.1|2556687_2557785_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX86987.1|2557922_2558531_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX86988.1|2558527_2559820_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX86989.1|2559833_2560376_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX86990.1|2560385_2561222_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX86991.1|2561255_2562317_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX86992.1|2562358_2563411_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX86993.1|2563426_2563729_-	hypothetical protein	NA	NA	NA	NA	NA
AZX86994.1|2563870_2564821_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX86995.1|2564999_2566694_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX86996.1|2566690_2567776_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX86997.1|2567823_2568723_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX86998.1|2568733_2569378_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX86999.1|2570399_2573642_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX87000.1|2573652_2574750_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX87001.1|2575012_2575996_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX87002.1|2576094_2577045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87003.1|2577143_2578094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87004.1|2578103_2578793_-	VIT family protein	NA	NA	NA	NA	NA
AZX87005.1|2578852_2579290_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX87006.1|2579335_2580229_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX87007.1|2580276_2581449_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX87008.1|2581445_2582600_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX87009.1|2582796_2583147_-	RnfH family protein	NA	NA	NA	NA	NA
AZX87010.1|2583136_2583571_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX87011.1|2583587_2584538_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87012.1|2584685_2585153_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX87013.1|2585133_2586291_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX87014.1|2586356_2587283_-	paraslipin	NA	NA	NA	NA	NA
AZX87015.1|2587400_2588351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2630631	2697131	4107545	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX87054.1|2630631_2631582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87055.1|2631951_2632524_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX87056.1|2632526_2633537_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX87057.1|2633529_2634030_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX87058.1|2634040_2634382_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX87059.1|2634393_2635185_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX87060.1|2635201_2635471_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX87061.1|2635493_2636282_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX87062.1|2636328_2637345_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX87063.1|2637561_2639004_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX87064.1|2639182_2640802_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX87065.1|2640922_2642743_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX87066.1|2642821_2644354_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX87067.1|2644387_2646034_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX87068.1|2646103_2647126_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX87069.1|2647143_2648277_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX87070.1|2648279_2648969_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX87071.1|2648968_2649754_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX87072.1|2649797_2650562_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX87073.1|2650600_2652022_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX87074.1|2652087_2652792_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX87075.1|2652839_2653259_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX87076.1|2653271_2653679_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX88411.1|2653862_2654573_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX87077.1|2654699_2654990_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX87078.1|2655007_2655490_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX87079.1|2659995_2661150_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX88412.1|2661455_2662472_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX87080.1|2662718_2663507_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX87081.1|2663573_2664254_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX87082.1|2664250_2665021_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX87083.1|2665119_2666070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87084.1|2666125_2667043_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX87085.1|2667053_2668232_-	mandelate racemase	NA	NA	NA	NA	NA
AZX87086.1|2668251_2669247_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87087.1|2670835_2671444_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX87088.1|2671431_2672472_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX87089.1|2672489_2673452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87090.1|2673448_2674642_-	CoA transferase	NA	NA	NA	NA	NA
AZX87091.1|2674638_2675436_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX87092.1|2675461_2676448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87093.1|2676466_2678506_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX88413.1|2678707_2679388_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87094.1|2679401_2680313_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX87095.1|2680309_2680888_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX87096.1|2681026_2681932_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87097.1|2681939_2685359_+	nuclease	NA	NA	NA	NA	NA
AZX87098.1|2685346_2687947_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX87099.1|2688902_2689535_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87100.1|2689928_2690687_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87101.1|2690683_2691886_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX87102.1|2692073_2693024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87103.1|2693931_2695077_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX88414.1|2695096_2695819_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX87104.1|2695935_2696115_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87105.1|2696180_2697131_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2900194	2981471	4107545	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZX87268.1|2900194_2901145_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87269.1|2901141_2902044_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87270.1|2902131_2902890_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX87271.1|2902902_2904051_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX87272.1|2904091_2905519_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX87273.1|2905748_2906963_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX87274.1|2907008_2909879_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX87275.1|2912289_2912778_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX87276.1|2912903_2915600_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX87277.1|2915754_2918037_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX87278.1|2918201_2918834_+	fimbrial protein	NA	NA	NA	NA	NA
AZX87279.1|2918932_2919883_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX87280.1|2919929_2920484_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX87281.1|2920551_2921397_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX87282.1|2921466_2922435_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX87283.1|2922434_2924231_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87284.1|2926130_2930057_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX87285.1|2930347_2930524_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87286.1|2930792_2934023_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX87287.1|2934304_2935132_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX87288.1|2935165_2935861_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX87289.1|2935853_2937134_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX87290.1|2937143_2938121_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88430.1|2938102_2939803_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX87291.1|2939905_2941009_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX87292.1|2941039_2941795_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX87293.1|2941801_2943322_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX87294.1|2943364_2943667_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87295.1|2943663_2944296_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87296.1|2944374_2946240_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX87297.1|2946236_2947052_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX87298.1|2947059_2948175_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX87299.1|2949079_2949958_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX87300.1|2949957_2950782_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX87301.1|2950949_2951900_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87302.1|2952082_2954962_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX87303.1|2954943_2955720_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX87304.1|2955812_2957276_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX87305.1|2957272_2957644_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX87306.1|2957661_2958975_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87307.1|2959011_2959470_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX87308.1|2959582_2960533_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87309.1|2960529_2961543_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX87310.1|2961682_2962669_+	homoserine kinase	NA	NA	NA	NA	NA
AZX87311.1|2962712_2963513_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87312.1|2964315_2965266_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87313.1|2965417_2966020_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87314.1|2966038_2966671_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX87315.1|2966908_2968795_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX87316.1|2968813_2969656_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX87317.1|2969652_2971011_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX87318.1|2971231_2972026_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX87319.1|2972256_2973750_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX87320.1|2973985_2976067_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX87321.1|2976261_2977302_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX87322.1|2977436_2978453_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX87323.1|2978474_2979332_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX88431.1|2979376_2980153_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX87324.1|2980520_2981471_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	2990539	3039584	4107545	tRNA,holin,transposase	uncultured_Mediterranean_phage(42.86%)	45	NA	NA
AZX87332.1|2990539_2990953_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX87333.1|2990993_2991311_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX87334.1|2991395_2992112_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88432.1|2992375_2993797_+	siroheme synthase	NA	NA	NA	NA	NA
AZX87335.1|2996469_2997420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87336.1|2997992_2999009_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX88433.1|2999344_2999986_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX87337.1|3000076_3001513_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX87338.1|3001670_3002744_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX87339.1|3002740_3003877_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX87340.1|3004021_3004366_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX87341.1|3004432_3006313_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX87342.1|3006362_3007298_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX88434.1|3007630_3008647_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX87343.1|3009584_3011012_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX87344.1|3011008_3012031_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX87345.1|3012020_3012494_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX87346.1|3012619_3013522_+	transporter associated domain protein	NA	NA	NA	NA	NA
AZX87347.1|3013518_3015162_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX88435.1|3015158_3016166_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX88436.1|3016996_3018013_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX87348.1|3018112_3018745_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX87349.1|3018753_3019143_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX87350.1|3019195_3020248_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX87351.1|3021111_3021876_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
AZX87352.1|3021949_3022450_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX87353.1|3022464_3024522_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX87354.1|3024548_3024842_-	response regulator	NA	NA	NA	NA	NA
AZX87355.1|3024943_3025891_-	motility protein MotB	NA	NA	NA	NA	NA
AZX87356.1|3025903_3026779_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX87357.1|3026899_3027460_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX87358.1|3027494_3027818_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX87359.1|3028253_3028991_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX87360.1|3029289_3030240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87361.1|3030483_3030747_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX87362.1|3030820_3031102_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87363.1|3031118_3031979_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX87364.1|3031975_3032311_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87365.1|3032364_3033015_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX87366.1|3034695_3035640_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87367.1|3035685_3036003_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87368.1|3036005_3036944_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX87369.1|3037121_3037607_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX87370.1|3037625_3038174_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX87371.1|3038450_3039584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	3051191	3191759	4107545	holin,transposase	Bacillus_virus(11.11%)	117	NA	NA
AZX87380.1|3051191_3052142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87381.1|3052240_3053191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87382.1|3053233_3054409_+	flagellin FliC	NA	NA	NA	NA	NA
AZX87383.1|3054630_3056421_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX87384.1|3056433_3058095_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX87385.1|3058107_3060813_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX87386.1|3061105_3062860_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX87387.1|3062856_3063483_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX87388.1|3063479_3064331_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX87389.1|3064406_3066521_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX87390.1|3066671_3067322_+	SCO family protein	NA	NA	NA	NA	NA
AZX87391.1|3067467_3067719_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX87392.1|3067788_3069171_-	multidrug transporter	NA	NA	NA	NA	NA
AZX87393.1|3069167_3072347_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX88438.1|3073154_3074072_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87394.1|3074123_3074855_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX87395.1|3074914_3075487_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX88439.1|3076995_3078012_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX87396.1|3078149_3079199_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX87397.1|3079303_3080254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87398.1|3080349_3081075_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX87399.1|3081285_3081666_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX87400.1|3081971_3082844_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX87401.1|3082851_3083232_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87402.1|3083385_3084660_-	radical SAM protein	NA	NA	NA	NA	NA
AZX88440.1|3086147_3087056_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX87403.1|3087853_3088918_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX87404.1|3090754_3091789_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX87405.1|3091978_3092620_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX87406.1|3092702_3094529_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX87407.1|3094772_3095702_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX87408.1|3095701_3096451_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX87409.1|3096522_3097437_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX87410.1|3097456_3098602_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX87411.1|3098662_3099574_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX87412.1|3099654_3100605_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87413.1|3100703_3101288_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX87414.1|3101322_3102312_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX87415.1|3102308_3103250_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX87416.1|3103246_3104467_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX87417.1|3104509_3104824_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX87418.1|3105015_3105375_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX87419.1|3105376_3107107_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX87420.1|3107279_3107951_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX87421.1|3107965_3109294_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX87422.1|3109290_3110190_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX87423.1|3110276_3111362_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX87424.1|3111354_3112488_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX87425.1|3112487_3115169_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX87426.1|3115539_3116121_+	OmpA family protein	NA	NA	NA	NA	NA
AZX87427.1|3116198_3116972_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX87428.1|3116968_3117646_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX87429.1|3117861_3119043_+	MFS transporter	NA	NA	NA	NA	NA
AZX87430.1|3119519_3119777_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87431.1|3119815_3119998_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX87432.1|3120027_3120978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88441.1|3121107_3121500_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX87433.1|3121776_3122688_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX87434.1|3122812_3123787_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87435.1|3123783_3124734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87436.1|3124832_3125918_-	DNA polymerase IV	NA	NA	NA	NA	NA
AZX87437.1|3126015_3126426_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX87438.1|3127041_3128955_+	S9 family peptidase	NA	NA	NA	NA	NA
AZX87439.1|3129090_3131703_+	penicillin-binding protein	NA	NA	NA	NA	NA
AZX87440.1|3131704_3132439_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX87441.1|3132602_3133784_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX87442.1|3133780_3133993_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87443.1|3133989_3134970_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX88442.1|3135015_3135843_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX87444.1|3135989_3137807_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX87445.1|3137861_3138245_+	ferredoxin	NA	NA	NA	NA	NA
AZX87446.1|3138241_3139192_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87447.1|3139304_3139556_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87448.1|3139749_3139965_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87449.1|3140061_3141180_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX87450.1|3141299_3141512_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87451.1|3141671_3141893_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87452.1|3141945_3142896_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87453.1|3144072_3145443_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX87454.1|3145475_3146267_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87455.1|3146279_3147335_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87456.1|3147360_3148236_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87457.1|3148341_3148590_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87458.1|3148624_3150079_-	carboxylase	NA	NA	NA	NA	NA
AZX87459.1|3150075_3150597_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX87460.1|3150625_3151978_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX87461.1|3152201_3155090_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX87462.1|3157234_3158536_+	phospholipase	NA	NA	NA	NA	NA
AZX87463.1|3158550_3159267_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX87464.1|3159548_3160229_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX87465.1|3160240_3160408_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87466.1|3160516_3160669_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87467.1|3160756_3161416_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX87468.1|3161796_3163647_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX87469.1|3163643_3164594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87470.1|3165757_3167473_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX87471.1|3167483_3167975_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX87472.1|3168047_3169064_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX87473.1|3169231_3170011_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX87474.1|3170029_3170557_-	lipoprotein	NA	NA	NA	NA	NA
AZX87475.1|3170555_3170762_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87476.1|3170850_3171120_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX87477.1|3171210_3173370_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX87478.1|3173490_3174210_+	lipoprotein	NA	NA	NA	NA	NA
AZX87479.1|3174206_3175157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87480.1|3175297_3176515_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX87481.1|3176508_3177120_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX87482.1|3177753_3178731_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX87483.1|3178874_3179621_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX87484.1|3179642_3180089_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX87485.1|3180876_3183108_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX87486.1|3183130_3183931_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87487.1|3184212_3185445_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX87488.1|3185555_3186545_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87489.1|3186575_3187964_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX87490.1|3189562_3190546_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88443.1|3190742_3191759_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	3256217	3329379	4107545	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZX87544.1|3256217_3257168_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87545.1|3257164_3258184_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX87546.1|3258193_3260902_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX87547.1|3261049_3261706_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX87548.1|3261804_3262755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87549.1|3262860_3263796_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX87550.1|3263995_3265690_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX87551.1|3265724_3266651_+	VOC family protein	NA	NA	NA	NA	NA
AZX88446.1|3266719_3267817_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87552.1|3267835_3268699_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX87553.1|3268710_3269493_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX87554.1|3269489_3270608_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX87555.1|3270604_3272137_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX87556.1|3272177_3273185_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX87557.1|3273329_3274052_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87558.1|3274067_3275090_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX87559.1|3275406_3276141_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87560.1|3276225_3277971_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX87561.1|3277967_3278720_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX87562.1|3278764_3279721_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87563.1|3279809_3280376_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87564.1|3280383_3281244_-	aminotransferase	NA	NA	NA	NA	NA
AZX87565.1|3281273_3282017_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX87566.1|3282033_3282717_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX87567.1|3283554_3284469_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX87568.1|3284533_3285442_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87569.1|3285532_3286957_-	protein CyaE	NA	NA	NA	NA	NA
AZX87570.1|3286958_3288281_-	protein CyaD	NA	NA	NA	NA	NA
AZX87571.1|3288277_3290416_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX87572.1|3290493_3295614_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX88447.1|3295800_3295980_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87573.1|3296062_3296650_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX87574.1|3296665_3298147_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX87575.1|3298201_3300055_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87576.1|3300317_3301655_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX87577.1|3301689_3303687_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX87578.1|3303704_3305753_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX87579.1|3305883_3306750_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87580.1|3307018_3307984_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX87581.1|3308098_3309247_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX87582.1|3309671_3309983_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX87583.1|3310016_3310277_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX87584.1|3310426_3311560_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX87585.1|3311630_3312767_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX87586.1|3312932_3313727_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX87587.1|3313789_3314233_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX87588.1|3314348_3315299_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87589.1|3315285_3315474_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87590.1|3315421_3315829_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX87591.1|3315901_3318097_+	DNA methylase	NA	NA	NA	NA	NA
AZX87592.1|3318318_3319269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87593.1|3319228_3319753_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX87594.1|3319884_3320856_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88448.1|3320975_3323420_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX87595.1|3323435_3324026_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX87596.1|3324269_3325220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87597.1|3325377_3326643_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX87598.1|3326676_3327774_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX87599.1|3328428_3329379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	3340666	3440779	4107545	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX87610.1|3340666_3341617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87611.1|3342348_3342726_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX87612.1|3342710_3343412_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87613.1|3343555_3344248_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX87614.1|3344247_3345351_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX87615.1|3345460_3347833_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX87616.1|3347829_3349389_+	chaperone SurA	NA	NA	NA	NA	NA
AZX87617.1|3349413_3350211_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX87618.1|3350242_3351388_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX87619.1|3351492_3352935_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX88449.1|3352937_3354026_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87620.1|3356304_3357255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87621.1|3357241_3357460_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87622.1|3358384_3358942_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87623.1|3358917_3359268_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87624.1|3359436_3360231_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX87625.1|3360227_3361277_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX87626.1|3361276_3361966_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX87627.1|3362052_3362550_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX87628.1|3362581_3363898_-	protein TolB	NA	NA	NA	NA	NA
AZX87629.1|3363914_3364889_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX87630.1|3364925_3365384_-	protein TolR	NA	NA	NA	NA	NA
AZX87631.1|3365383_3366064_-	protein TolQ	NA	NA	NA	NA	NA
AZX87632.1|3366066_3366495_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX87633.1|3366547_3368278_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX87634.1|3368343_3368916_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX87635.1|3368896_3369583_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX87636.1|3369938_3370610_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX87637.1|3370616_3370817_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87638.1|3371159_3371441_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87639.1|3371437_3371971_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX87640.1|3371952_3372504_-	lysozyme	NA	NA	NA	NA	NA
AZX87641.1|3372482_3372725_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87642.1|3372729_3373542_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87643.1|3373541_3373805_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87644.1|3374023_3374440_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87645.1|3374444_3378401_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX87646.1|3378393_3378783_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX87647.1|3378779_3379313_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX87648.1|3379380_3379740_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87649.1|3379749_3382362_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX87650.1|3382387_3382678_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX87651.1|3382695_3383025_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX87652.1|3383034_3383553_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX87653.1|3383807_3384308_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX87654.1|3384315_3384738_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87655.1|3384734_3385133_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX87656.1|3385129_3385525_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX87657.1|3385524_3385725_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87658.1|3385726_3386209_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX87659.1|3386271_3386523_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87660.1|3386532_3387180_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX87661.1|3387197_3388148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87662.1|3388576_3389179_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX87663.1|3389301_3389544_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX88450.1|3389549_3390605_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX87664.1|3390633_3392052_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX87665.1|3392054_3393332_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX87666.1|3393318_3393768_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX87667.1|3394443_3395394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87668.1|3395411_3395633_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87669.1|3395647_3396346_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87670.1|3396338_3396659_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88451.1|3397138_3397750_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX87671.1|3397815_3398028_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87672.1|3398279_3399230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87673.1|3399328_3400402_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87674.1|3400569_3401364_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX87675.1|3401403_3401928_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX87676.1|3401920_3403663_-	sulfite reductase	NA	NA	NA	NA	NA
AZX87677.1|3403872_3404631_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX87678.1|3404633_3405341_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX87679.1|3405357_3406239_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX87680.1|3406249_3407008_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX88452.1|3406976_3407732_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87681.1|3407801_3409220_+	amidase	NA	NA	NA	NA	NA
AZX87682.1|3409241_3409892_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX87683.1|3410025_3410361_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX87684.1|3410449_3411400_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87685.1|3411476_3413297_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX87686.1|3413301_3414375_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX87687.1|3414497_3415466_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX87688.1|3415539_3416451_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX87689.1|3416469_3417042_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX87690.1|3417122_3417671_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX87691.1|3417670_3419260_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX87692.1|3419329_3419569_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX87693.1|3419609_3420641_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX87694.1|3420700_3421882_-	monooxygenase	NA	NA	NA	NA	NA
AZX87695.1|3421978_3422431_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87696.1|3422440_3423781_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX87697.1|3424097_3425135_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87698.1|3425516_3425876_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88453.1|3425959_3426901_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87699.1|3426975_3427926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87700.1|3428219_3429314_+	porin	NA	NA	NA	NA	NA
AZX87701.1|3429395_3430277_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX87702.1|3430298_3431138_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX87703.1|3431213_3432731_+	peptidase	NA	NA	NA	NA	NA
AZX87704.1|3432827_3433928_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX87705.1|3433944_3434367_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX87706.1|3434389_3434602_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX87707.1|3434648_3435569_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX88454.1|3435832_3436501_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX87708.1|3436503_3436833_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX87709.1|3437039_3438473_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX87710.1|3438484_3438868_-	thioredoxin	NA	NA	NA	NA	NA
AZX87711.1|3438929_3439730_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87712.1|3439828_3440779_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	3601448	3656422	4107545	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
AZX87853.1|3601448_3602399_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87854.1|3602515_3603583_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AZX87855.1|3603658_3606787_-	ribonuclease E/G	NA	NA	NA	NA	NA
AZX87856.1|3607294_3608260_+	23S rRNA pseudouridine(955/2504/2580) synthase	NA	NA	NA	NA	NA
AZX87857.1|3608262_3608934_+	hydrolase	NA	NA	NA	NA	NA
AZX87858.1|3609090_3610050_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AZX87859.1|3610057_3610720_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AZX87860.1|3610716_3611667_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87861.1|3611788_3613042_+	CoA transferase	NA	NA	NA	NA	NA
AZX87862.1|3613019_3613982_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88460.1|3614134_3614608_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX87863.1|3614607_3615840_+	2-methylfumaryl-CoA isomerase	NA	NA	NA	NA	NA
AZX87864.1|3616585_3616867_+	hypothetical protein	NA	NA	NA	NA	NA
AZX87865.1|3616853_3617840_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87866.1|3617983_3618388_+	RidA family protein	NA	NA	NA	NA	NA
AZX87867.1|3618529_3621916_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AZX87868.1|3621946_3623410_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AZX87869.1|3623406_3625047_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AZX87870.1|3625156_3625792_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87871.1|3625821_3626262_-	hypothetical protein	NA	NA	NA	NA	NA
AZX87872.1|3626772_3626976_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AZX87873.1|3627151_3628057_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87874.1|3628155_3629106_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87875.1|3629204_3630155_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87876.1|3631936_3633130_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX87877.1|3633195_3634224_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX87878.1|3634250_3635423_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX87879.1|3635548_3636526_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX87880.1|3636536_3637508_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX87881.1|3637574_3638360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX87882.1|3638352_3639585_-	CoA transferase	NA	NA	NA	NA	NA
AZX87883.1|3639780_3640536_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX87884.1|3640646_3641165_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX88461.1|3642953_3644354_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX87885.1|3644453_3644798_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX87886.1|3644886_3645357_+	universal stress protein	NA	NA	NA	NA	NA
AZX87887.1|3645767_3646166_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX87888.1|3646297_3647248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87889.1|3649692_3650427_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX87890.1|3650836_3651016_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88462.1|3651206_3652520_+	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX87891.1|3652535_3654047_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX87892.1|3654043_3655249_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX87893.1|3655444_3656422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	3746235	3800430	4107545	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
AZX87978.1|3746235_3747186_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX87979.1|3747308_3748037_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AZX87980.1|3748043_3749312_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZX87981.1|3749308_3750142_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AZX87982.1|3750178_3750919_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX87983.1|3751038_3752214_-	dihydroorotase	NA	NA	NA	NA	NA
AZX87984.1|3752210_3753164_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AZX87985.1|3753177_3753579_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZX87986.1|3753571_3754249_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
AZX88470.1|3754264_3754429_-	rubredoxin	NA	NA	NA	NA	NA
AZX87987.1|3754545_3755394_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZX87988.1|3755390_3756044_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AZX87989.1|3756060_3757344_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AZX87990.1|3757583_3759209_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AZX87991.1|3759302_3759704_-	RidA family protein	NA	NA	NA	NA	NA
AZX87992.1|3759728_3760163_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX87993.1|3760164_3761814_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AZX87994.1|3761854_3763024_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX87995.1|3763026_3763890_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX87996.1|3767253_3767958_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AZX87997.1|3767951_3768746_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AZX87998.1|3768742_3769708_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX87999.1|3769711_3770632_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX88000.1|3770728_3771892_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88001.1|3772114_3773005_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX88002.1|3773008_3773512_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88003.1|3773554_3774553_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88004.1|3774549_3775500_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88005.1|3775615_3775876_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88006.1|3776067_3777018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88007.1|3777077_3777638_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZX88008.1|3779140_3780022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88009.1|3780135_3781338_+	MFS transporter	NA	NA	NA	NA	NA
AZX88010.1|3781466_3783326_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX88011.1|3783403_3784213_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX88012.1|3784283_3785285_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX88013.1|3785316_3786177_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX88014.1|3786376_3787381_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZX88015.1|3787377_3788964_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88016.1|3788972_3789899_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX88017.1|3789921_3790548_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX88018.1|3790646_3791597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88471.1|3791593_3792730_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX88019.1|3792783_3793560_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX88020.1|3793584_3794043_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX88472.1|3794182_3794824_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX88021.1|3794888_3796271_+	cytochrome b	NA	NA	NA	NA	NA
AZX88022.1|3796290_3797145_+	cytochrome c1	NA	NA	NA	NA	NA
AZX88023.1|3797303_3797915_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZX88024.1|3797924_3798374_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX88025.1|3798892_3799033_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88026.1|3799040_3799202_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX88027.1|3799277_3799493_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88028.1|3799479_3800430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	3811046	3871935	4107545	protease,tRNA,transposase	uncultured_Caudovirales_phage(33.33%)	52	NA	NA
AZX88037.1|3811046_3811997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88038.1|3812727_3813708_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88039.1|3813721_3814846_+	CoA transferase	NA	NA	NA	NA	NA
AZX88040.1|3814853_3816608_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX88041.1|3816714_3817614_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88042.1|3817678_3818662_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX88043.1|3818797_3819778_+	AEC family transporter	NA	NA	NA	NA	NA
AZX88044.1|3819794_3821186_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX88045.1|3821337_3821874_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX88473.1|3821945_3823190_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX88046.1|3823332_3823971_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88047.1|3824057_3825947_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX88048.1|3825943_3826885_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX88049.1|3826990_3828040_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX88050.1|3828292_3828994_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX88051.1|3828990_3829689_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX88052.1|3829689_3831045_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX88053.1|3831041_3831533_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX88054.1|3831551_3832508_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88055.1|3833918_3836021_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88056.1|3836191_3837235_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88057.1|3837278_3838022_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88058.1|3839043_3839454_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX88059.1|3840403_3841201_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX88060.1|3841299_3842250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88061.1|3842246_3843197_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88062.1|3843283_3844234_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88063.1|3844348_3845350_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZX88064.1|3845440_3846007_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZX88065.1|3846325_3848239_+	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZX88066.1|3848280_3849711_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX88067.1|3849823_3851236_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX88068.1|3851252_3851948_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88069.1|3852000_3852180_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88070.1|3852166_3853117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88071.1|3853141_3854041_-	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX88072.1|3854195_3854744_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX88073.1|3854782_3855502_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX88074.1|3855573_3858516_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX88075.1|3859109_3861905_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX88076.1|3862362_3863295_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX88077.1|3863406_3864756_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX88078.1|3864787_3865513_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX88474.1|3865563_3866415_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88079.1|3866544_3867231_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX88080.1|3867230_3867875_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX88081.1|3867931_3868207_+	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX88082.1|3868232_3868529_+	YciI family protein	NA	NA	NA	NA	NA
AZX88083.1|3868529_3869354_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX88084.1|3869350_3870400_+	cyclase	NA	NA	NA	NA	NA
AZX88085.1|3870504_3870828_-	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX88086.1|3870984_3871935_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025376	Bordetella pertussis strain I462 chromosome, complete genome	4107545	4006613	4071525	4107545	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX88199.1|4006613_4007099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88200.1|4007317_4008298_+	protein BugT	NA	NA	NA	NA	NA
AZX88201.1|4008564_4009374_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX88202.1|4009413_4010094_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX88203.1|4010087_4010546_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX88204.1|4010557_4010920_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX88205.1|4011002_4011686_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX88206.1|4011741_4012050_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX88207.1|4012068_4012383_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX88208.1|4012379_4014854_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX88209.1|4014861_4016253_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX88210.1|4016249_4016435_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX88211.1|4016413_4017115_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX88212.1|4017111_4017933_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX88483.1|4017913_4019038_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX88213.1|4019030_4020050_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX88214.1|4020255_4021290_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX88484.1|4021390_4022182_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX88215.1|4022264_4022639_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX88216.1|4022616_4024026_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX88217.1|4024018_4025401_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX88218.1|4025735_4027340_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX88219.1|4027375_4028389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX88220.1|4028399_4029326_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX88221.1|4029716_4030667_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88222.1|4030836_4032063_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX88223.1|4032262_4033129_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX88224.1|4033121_4034084_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX88225.1|4034184_4035135_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88226.1|4035233_4036184_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88227.1|4036282_4037233_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX88228.1|4037229_4038723_-	RND transporter	NA	NA	NA	NA	NA
AZX88229.1|4038719_4041827_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX88230.1|4041823_4044892_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX88231.1|4044888_4046139_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX88232.1|4046319_4047081_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX88233.1|4047113_4047764_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX88234.1|4047766_4048606_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX88235.1|4048846_4049590_+	hypothetical protein	NA	NA	NA	NA	NA
AZX88236.1|4049672_4050020_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX88237.1|4050117_4050960_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX88238.1|4051004_4051892_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX88239.1|4051918_4052107_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX88240.1|4052204_4053662_+	MFS transporter	NA	NA	NA	NA	NA
AZX88241.1|4053648_4055175_+	glycerol kinase	NA	NA	NA	NA	NA
AZX88242.1|4055193_4055661_-	hypothetical protein	NA	NA	NA	NA	NA
AZX88243.1|4055660_4056683_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX88244.1|4056803_4057544_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX88245.1|4057598_4058699_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX88246.1|4058700_4059891_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX88247.1|4060010_4061027_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX88248.1|4061345_4062017_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX88249.1|4062013_4062922_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX88250.1|4063133_4063781_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX88251.1|4067632_4068709_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX88252.1|4068719_4069529_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX88253.1|4069618_4070392_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX88254.1|4070574_4071525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
