The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	0	122073	4104306	tRNA,transposase,protease	Planktothrix_phage(16.67%)	110	NA	NA
AZX74103.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX74104.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX74105.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX74106.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX74107.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX74108.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX74109.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX74110.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX74111.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX74112.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX74113.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX74114.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX74115.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX74116.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX77495.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX74117.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74118.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX74119.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX74120.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74121.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX74122.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74123.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX74124.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX77496.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74125.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX74126.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX74127.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74128.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX74129.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX74130.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX74131.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX74132.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX74133.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX74134.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX74135.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX74136.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX74137.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74138.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74139.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX74140.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74141.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX74142.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX74143.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74144.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX74145.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX74146.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX74147.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX74148.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX74149.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX74150.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74151.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX74152.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX74153.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74154.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74155.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX74156.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX74157.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX74158.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX74159.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74160.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74161.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX74162.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX74163.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX74164.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX74165.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77497.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74166.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX74167.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77498.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74168.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX74169.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX74170.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX74171.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX74172.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX74173.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX74174.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX74175.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX74176.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX74177.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX74178.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX74179.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX74180.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74181.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX74182.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX74183.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX74184.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX74185.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74186.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX74187.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX74188.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX74189.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX74190.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX74191.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX74192.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX74193.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX74194.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX74195.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74196.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX74197.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX74198.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX74199.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX77499.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX74200.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77500.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX74201.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX74202.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX74203.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX74204.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX74205.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX74206.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	164893	225404	4104306	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX74238.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74239.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74240.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZX74241.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX74242.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX74243.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX74244.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77505.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZX74245.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74246.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZX74247.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZX74248.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX74249.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX74250.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74251.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX74252.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX74253.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX74254.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX74255.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZX74256.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX77506.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX74257.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74258.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX74259.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX74260.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74261.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX74262.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX74263.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX74264.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX74265.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX74266.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74267.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZX74268.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74269.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74270.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX74271.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZX74272.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX74273.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZX74274.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX74275.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX74276.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX77507.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74277.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX74278.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX74279.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX74280.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX74281.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX74282.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX74283.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX74284.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX74285.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	233336	286924	4104306	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
AZX74293.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74294.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74295.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74296.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX74297.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX74298.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74299.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX74300.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74301.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74302.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX74303.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX74304.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX74305.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX74306.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX74307.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX74308.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX74309.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77508.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX74310.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX74311.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX74312.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZX74313.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX74314.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74315.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX74316.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZX74317.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74318.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74319.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74320.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX74321.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX74322.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX74323.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX74324.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX74325.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX74326.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX74327.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74328.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74329.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX74330.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74331.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX74332.1|279655_280267_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX74333.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
AZX74334.1|281299_282682_-	cytochrome b	NA	NA	NA	NA	NA
AZX74335.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX74336.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX74337.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX77509.1|284840_285977_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX74338.1|285973_286924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	390857	448366	4104306	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX74437.1|390857_391808_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74438.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
AZX74439.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX74440.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
AZX74441.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74442.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
AZX74443.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74444.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77515.1|400018_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX74445.1|401157_402141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74446.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74447.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX74448.1|403584_404826_-	CoA transferase	NA	NA	NA	NA	NA
AZX74449.1|404930_406637_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX74450.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74451.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX74452.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74453.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77516.1|411330_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74454.1|412386_413337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74455.1|413425_414340_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX74456.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
AZX74457.1|415085_416009_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX74458.1|416014_416470_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74459.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX77517.1|417489_417798_+	GtrA family protein	NA	NA	NA	NA	NA
AZX74460.1|417757_419377_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX74461.1|419373_420432_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX74462.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX74463.1|421148_422126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74464.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX74465.1|423523_425035_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77518.1|425050_426364_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX74466.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74467.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX74468.1|430322_431273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74469.1|431404_431803_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX74470.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
AZX74471.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX74472.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX74473.1|436405_436924_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX74474.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX74475.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
AZX74476.1|439210_439996_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX74477.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74478.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74479.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX74480.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX74481.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX74482.1|447415_448366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	620802	721266	4104306	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX74634.1|620802_621753_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74635.1|622451_622835_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74636.1|622892_623495_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX77524.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
AZX74637.1|624047_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74638.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX74639.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
AZX74640.1|627088_628138_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX74641.1|628285_628864_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX74642.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX74643.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX74644.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74645.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX74646.1|636791_637742_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74647.1|637840_638641_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74648.1|638702_639086_+	thioredoxin	NA	NA	NA	NA	NA
AZX74649.1|639097_640531_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX74650.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX77525.1|641069_641738_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX74651.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX74652.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX74653.1|643203_643626_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX74654.1|643642_644743_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX74655.1|644839_646357_-	peptidase	NA	NA	NA	NA	NA
AZX74656.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX74657.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX74658.1|648256_649351_-	porin	NA	NA	NA	NA	NA
AZX74659.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77526.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74660.1|651694_652054_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74661.1|652435_653473_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74662.1|653789_655130_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX74663.1|655139_655592_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74664.1|655688_656870_+	monooxygenase	NA	NA	NA	NA	NA
AZX74665.1|656929_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX74666.1|658001_658241_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX74667.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX74668.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX74669.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX74670.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX74671.1|662104_663073_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX74672.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX74673.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX74674.1|666170_667121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74675.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX74676.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX74677.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
AZX74678.1|669838_670594_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77527.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX74679.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX74680.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX74681.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX74682.1|673907_675650_+	sulfite reductase	NA	NA	NA	NA	NA
AZX74683.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX74684.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX74685.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74686.1|678340_679291_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74687.1|679542_679755_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77528.1|679820_680432_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX74688.1|680911_681232_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74689.1|681224_681923_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74690.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74691.1|682176_683127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77529.1|683802_684252_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX74692.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX74693.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX77530.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX74694.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX74695.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX74696.1|689422_690373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74697.1|690390_691038_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX74698.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74699.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX74700.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74701.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX74702.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX74703.1|692832_693255_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74704.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX74705.1|694017_694536_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX74706.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX74707.1|694892_695183_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX74708.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX74709.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74710.1|698257_698791_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX74711.1|698787_699177_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX74712.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX74713.1|703130_703547_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74714.1|703765_704029_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX74715.1|704028_704841_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74716.1|704845_705088_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74717.1|705066_705618_+	lysozyme	NA	NA	NA	NA	NA
AZX74718.1|705599_706133_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX74719.1|706129_706411_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74720.1|706753_706954_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74721.1|706960_707632_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX74722.1|707987_708674_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX74723.1|708654_709227_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX74724.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX74725.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX74726.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
AZX74727.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
AZX74728.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX74729.1|713672_714989_+	protein TolB	NA	NA	NA	NA	NA
AZX74730.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX74731.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX74732.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX74733.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX74734.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74735.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74736.1|720110_720329_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74737.1|720315_721266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	748191	821353	4104306	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZX74758.1|748191_749142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74759.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX74760.1|750927_752193_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX74761.1|752350_753301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74762.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX77532.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX74763.1|756714_757686_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74764.1|757817_758342_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX74765.1|758301_759252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74766.1|759473_761669_-	DNA methylase	NA	NA	NA	NA	NA
AZX74767.1|761741_762149_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX74768.1|762271_763222_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74769.1|763337_763781_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX74770.1|763843_764638_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX74771.1|764803_765940_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX74772.1|766010_767144_-	GTPase ObgE	NA	NA	NA	NA	NA
AZX74773.1|767293_767554_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX74774.1|767587_767899_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX74775.1|768323_769472_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX74776.1|769586_770552_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX74777.1|770820_771687_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74778.1|771817_773866_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX74779.1|773883_775881_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX74780.1|775915_777253_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX74781.1|777515_779369_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74782.1|779423_780905_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX74783.1|780920_781508_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX77533.1|781590_781770_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74784.1|781956_787077_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX74785.1|787154_789293_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX74786.1|789289_790612_+	protein CyaD	NA	NA	NA	NA	NA
AZX74787.1|790613_792038_+	protein CyaE	NA	NA	NA	NA	NA
AZX74788.1|792128_793037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74789.1|793101_794016_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX74790.1|794853_795537_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX74791.1|795553_796297_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX74792.1|796326_797187_+	aminotransferase	NA	NA	NA	NA	NA
AZX74793.1|797194_797761_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74794.1|797849_798806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74795.1|798850_799603_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX74796.1|799599_801345_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX74797.1|801429_802164_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74798.1|802480_803503_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX74799.1|803518_804241_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74800.1|804385_805393_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX74801.1|805433_806966_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX74802.1|806962_808081_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX74803.1|808077_808860_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX74804.1|808871_809735_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX77534.1|809753_810851_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74805.1|810919_811846_-	VOC family protein	NA	NA	NA	NA	NA
AZX74806.1|811880_813575_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX74807.1|813774_814710_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX74808.1|814815_815766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74809.1|815864_816521_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX74810.1|816668_819377_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX74811.1|819386_820406_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX74812.1|820402_821353_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	854100	903364	4104306	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZX74841.1|854100_855051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77535.1|855023_855623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74842.1|855624_856059_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX74843.1|856055_856490_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74844.1|856473_857277_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX74845.1|857293_858109_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX74846.1|858105_858921_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX74847.1|859067_859769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74848.1|859796_861755_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX74849.1|861837_862788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74850.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX74851.1|863800_864907_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX74852.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX74853.1|868029_869523_+	RND transporter	NA	NA	NA	NA	NA
AZX74854.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX74855.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
AZX74856.1|870887_871535_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX77536.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX74857.1|873683_875696_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX74858.1|875721_877056_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX74859.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74860.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX74861.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74862.1|881432_882434_-	peptidase M14	NA	NA	NA	NA	NA
AZX74863.1|882467_883709_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX74864.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX74865.1|884790_885615_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX77537.1|885811_886828_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX74866.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74867.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX74868.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74869.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX74870.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74871.1|894462_896694_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX74872.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX74873.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX74874.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX74875.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX74876.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX74877.1|902413_903364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	912976	977916	4104306	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX74886.1|912976_913927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74887.1|913923_915774_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX74888.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX74889.1|916901_917054_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74890.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74891.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX74892.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX74893.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
AZX74894.1|922480_925369_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX74895.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX74896.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX74897.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
AZX74898.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74899.1|929334_930210_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74900.1|930235_931291_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74901.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74902.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX74903.1|934674_935625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74904.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74905.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74906.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX74907.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74908.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74909.1|938378_939329_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74910.1|939325_939709_-	ferredoxin	NA	NA	NA	NA	NA
AZX74911.1|939763_941581_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX77539.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX74912.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX74913.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74914.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX74915.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX74916.1|945867_948480_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX74917.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX74918.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX74919.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX74920.1|952836_953787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74921.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74922.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX77540.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX74923.1|956592_957543_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74924.1|957572_957755_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX74925.1|957793_958051_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74926.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
AZX74927.1|959924_960602_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX74928.1|960598_961372_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX74929.1|961449_962031_-	OmpA family protein	NA	NA	NA	NA	NA
AZX74930.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX74931.1|965082_966216_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX74932.1|966208_967294_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX74933.1|967380_968280_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX74934.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX74935.1|969619_970291_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX74936.1|970463_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX74937.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX74938.1|972746_973061_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX74939.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX74940.1|974320_975262_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX74941.1|975258_976248_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX74942.1|976282_976867_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX74943.1|976965_977916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	997316	1060467	4104306	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZX74958.1|997316_998267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74959.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX77542.1|999558_1000575_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX74960.1|1002083_1002656_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX74961.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX77543.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74962.1|1005223_1008403_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX74963.1|1008399_1009782_+	multidrug transporter	NA	NA	NA	NA	NA
AZX74964.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX74965.1|1010248_1010899_-	SCO family protein	NA	NA	NA	NA	NA
AZX74966.1|1011049_1013164_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX74967.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX74968.1|1014087_1014714_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX74969.1|1014710_1016465_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX74970.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX74971.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX74972.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX74973.1|1023161_1024337_-	flagellin FliC	NA	NA	NA	NA	NA
AZX74974.1|1024379_1025330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74975.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX74976.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
AZX74977.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX74978.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX74979.1|1030768_1031542_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX74980.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
AZX74981.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX77544.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX74982.1|1036192_1036900_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX74983.1|1036937_1038071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74984.1|1038347_1038896_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX74985.1|1038914_1039400_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX74986.1|1039577_1040516_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX74987.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74988.1|1040881_1041826_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74989.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX74990.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74991.1|1044542_1045403_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX74992.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74993.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX74994.1|1046281_1047232_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74995.1|1047530_1048268_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX74996.1|1048703_1049027_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX74997.1|1049061_1049622_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX74998.1|1049742_1050618_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX74999.1|1050630_1051578_+	motility protein MotB	NA	NA	NA	NA	NA
AZX75000.1|1051679_1051973_+	response regulator	NA	NA	NA	NA	NA
AZX75001.1|1051999_1054057_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX75002.1|1054071_1054572_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX75003.1|1054645_1056352_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX75004.1|1057215_1058268_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX75005.1|1058320_1058710_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX75006.1|1058718_1059351_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX77545.1|1059450_1060467_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	1066451	1134613	4104306	tRNA,transposase,holin	uncultured_Mediterranean_phage(25.0%)	55	NA	NA
AZX75011.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX77547.1|1068816_1069833_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX75012.1|1070165_1071101_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX75013.1|1071150_1073031_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX75014.1|1073097_1073442_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX75015.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX75016.1|1074719_1075793_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX75017.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX77548.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX77549.1|1078454_1079471_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX75018.1|1079803_1082551_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZX77550.1|1082617_1084039_-	siroheme synthase	NA	NA	NA	NA	NA
AZX75019.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75020.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX75021.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX75022.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75023.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX75024.1|1087906_1088737_+	transglycosylase	NA	NA	NA	NA	NA
AZX75025.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX75026.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75027.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX75028.1|1094452_1094917_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX75029.1|1094943_1095894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77551.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX75030.1|1097082_1097940_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX75031.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX75032.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX75033.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX75034.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX75035.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX75036.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX75037.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX75038.1|1107619_1109506_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX75039.1|1109743_1110376_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX75040.1|1110394_1110997_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75041.1|1111148_1112099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75042.1|1112901_1113702_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75043.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
AZX75044.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX75045.1|1115881_1116832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75046.1|1116944_1117403_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX75047.1|1117439_1118753_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75048.1|1118770_1119142_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX75049.1|1119138_1120602_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX75050.1|1120694_1121471_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX75051.1|1121452_1124332_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX75052.1|1124514_1125465_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75053.1|1125632_1126457_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX75054.1|1126456_1127335_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX75055.1|1128239_1129355_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX75056.1|1129362_1130178_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX75057.1|1130174_1132040_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX75058.1|1132118_1132751_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX75059.1|1132747_1133050_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75060.1|1133092_1134613_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	1316904	1385391	4104306	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZX75203.1|1316904_1317855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75204.1|1318623_1319262_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX77561.1|1320151_1320598_+	glutamate racemase	NA	NA	NA	NA	NA
AZX75205.1|1320679_1321381_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZX75206.1|1321381_1322149_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZX75207.1|1322145_1323384_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZX75208.1|1323383_1324310_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZX75209.1|1324412_1325528_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX75210.1|1325543_1326494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75211.1|1326847_1327429_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZX75212.1|1327425_1328259_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZX77562.1|1328469_1329783_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZX75213.1|1329959_1330841_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZX75214.1|1330860_1331712_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZX75215.1|1331764_1332853_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZX75216.1|1332963_1334091_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77563.1|1334325_1334937_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX75217.1|1335035_1335986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75218.1|1336207_1336585_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZX77564.1|1336732_1337230_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZX75219.1|1337226_1337754_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZX75220.1|1337887_1338703_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX75221.1|1338715_1339897_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX75222.1|1339944_1340838_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZX77565.1|1340964_1341435_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75223.1|1341560_1342388_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZX75224.1|1342416_1343193_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZX75225.1|1343189_1343483_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZX75226.1|1343479_1343944_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX75227.1|1343955_1344741_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZX75228.1|1344766_1345267_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZX75229.1|1345349_1346528_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZX75230.1|1348155_1348491_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX75231.1|1348678_1350127_+	CoA transferase	NA	NA	NA	NA	NA
AZX75232.1|1350184_1350529_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZX75233.1|1350635_1351175_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX75234.1|1351267_1352218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75235.1|1352204_1352687_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75236.1|1352956_1353388_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75237.1|1353569_1353974_-	DoxX family protein	NA	NA	NA	NA	NA
AZX75238.1|1355210_1355534_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75239.1|1355536_1356424_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX75240.1|1356456_1356882_-	universal stress protein	NA	NA	NA	NA	NA
AZX75241.1|1356953_1357307_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75242.1|1357546_1358053_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75243.1|1358091_1359423_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZX75244.1|1359482_1360298_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZX75245.1|1360294_1361149_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZX77566.1|1364211_1366755_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZX75246.1|1368121_1369876_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZX75247.1|1369872_1371993_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZX75248.1|1371997_1374193_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZX77567.1|1374189_1377531_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZX75249.1|1380333_1381284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75250.1|1381349_1381529_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77568.1|1381645_1382368_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX75251.1|1382387_1383533_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX75252.1|1384440_1385391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	1445882	1501370	4104306	transposase,protease	Mollivirus(16.67%)	56	NA	NA
AZX75299.1|1445882_1446833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75300.1|1448034_1448481_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZX75301.1|1448473_1449949_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZX75302.1|1449945_1450701_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZX75303.1|1450693_1451704_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZX75304.1|1451693_1453370_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZX75305.1|1453682_1454015_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZX75306.1|1454028_1454424_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75307.1|1454433_1454760_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZX75308.1|1454756_1455083_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX75309.1|1455009_1456032_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX75310.1|1456028_1456409_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZX75311.1|1456426_1456855_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZX75312.1|1456862_1458236_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZX77573.1|1458376_1458754_-	flagellar protein	NA	NA	NA	NA	NA
AZX75313.1|1459016_1460324_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZX75314.1|1460384_1461215_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX75315.1|1461211_1461700_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZX75316.1|1461741_1463262_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZX77574.1|1463305_1463782_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX75317.1|1464585_1467183_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZX75318.1|1467212_1468034_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZX75319.1|1468760_1469510_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZX75320.1|1469642_1470572_+	elongation factor Ts	NA	NA	NA	NA	NA
AZX75321.1|1470669_1471386_+	UMP kinase	NA	NA	NA	NA	NA
AZX75322.1|1471400_1471961_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZX75323.1|1471998_1472892_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZX75324.1|1472911_1473769_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZX75325.1|1473765_1474965_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZX75326.1|1475004_1476339_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZX75327.1|1476391_1478728_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZX77575.1|1478853_1479417_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZX75328.1|1479425_1480517_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZX75329.1|1480588_1481044_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZX75330.1|1481044_1481839_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZX75331.1|1481835_1483017_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZX75332.1|1483003_1483609_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZX75333.1|1483605_1484379_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZX75334.1|1484390_1485218_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZX75335.1|1485379_1487743_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZX75336.1|1487810_1488530_-	GMP synthase	NA	NA	NA	NA	NA
AZX75337.1|1488653_1489079_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZX75338.1|1489113_1490064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75339.1|1490181_1491108_+	paraslipin	NA	NA	NA	NA	NA
AZX75340.1|1491173_1492331_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX75341.1|1492311_1492779_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX75342.1|1492926_1493877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75343.1|1493893_1494328_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX75344.1|1494317_1494668_+	RnfH family protein	NA	NA	NA	NA	NA
AZX75345.1|1494864_1496019_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX75346.1|1496015_1497188_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX75347.1|1497235_1498129_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX75348.1|1498174_1498612_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX75349.1|1498671_1499361_+	VIT family protein	NA	NA	NA	NA	NA
AZX75350.1|1499370_1500321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75351.1|1500419_1501370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	1793940	1841955	4104306	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
AZX75596.1|1793940_1794891_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75597.1|1794989_1795940_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75598.1|1796038_1798639_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX75599.1|1798745_1799750_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX75600.1|1799858_1801199_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX75601.1|1801239_1802268_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX75602.1|1802463_1803009_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX75603.1|1803005_1803566_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX75604.1|1803664_1804615_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75605.1|1804652_1805240_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX75606.1|1805257_1805641_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX75607.1|1807000_1808293_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX75608.1|1808427_1809468_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX77587.1|1809565_1810582_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX75609.1|1810849_1811497_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX75610.1|1811622_1812381_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX77588.1|1812455_1813145_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX75611.1|1813162_1814047_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX75612.1|1814043_1814823_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX75613.1|1814849_1815527_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77589.1|1815815_1816568_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75614.1|1816686_1818087_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX75615.1|1818110_1818509_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX75616.1|1818684_1818885_+	copper chaperone	NA	NA	NA	NA	NA
AZX75617.1|1819023_1819752_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX75618.1|1819885_1821301_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX75619.1|1821304_1822168_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX75620.1|1822180_1822930_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX75621.1|1823112_1825128_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX77590.1|1825109_1825658_-	arylesterase	NA	NA	NA	NA	NA
AZX75622.1|1825734_1826454_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX75623.1|1826552_1827503_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75624.1|1827651_1827990_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX75625.1|1828047_1828209_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX75626.1|1828240_1828441_-	CsbD family protein	NA	NA	NA	NA	NA
AZX75627.1|1828706_1831280_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX75628.1|1831350_1833924_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX75629.1|1836450_1836939_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX75630.1|1837030_1838182_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX75631.1|1838235_1839057_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX75632.1|1839095_1840325_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX75633.1|1840453_1840894_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX75634.1|1840838_1841018_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75635.1|1841004_1841955_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	1845348	1906553	4104306	tRNA,transposase,protease	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX75640.1|1845348_1848210_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX75641.1|1848199_1849165_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX75642.1|1849224_1851219_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX75643.1|1851317_1852268_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75644.1|1852264_1852639_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75645.1|1852900_1854109_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX75646.1|1854105_1856406_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX75647.1|1856458_1859071_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX75648.1|1859430_1861356_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX75649.1|1861352_1862249_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX75650.1|1862255_1863395_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX75651.1|1863394_1864216_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX75652.1|1865786_1866116_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX75653.1|1866498_1867755_+	autotransporter Phg	NA	NA	NA	NA	NA
AZX75654.1|1867829_1868111_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75655.1|1868152_1868473_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75656.1|1868779_1868983_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX75657.1|1869066_1869633_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX75658.1|1869978_1870179_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX75659.1|1870290_1870869_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX75660.1|1871047_1872358_+	trigger factor	NA	NA	NA	NA	NA
AZX75661.1|1872360_1873014_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX75662.1|1873118_1874423_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX75663.1|1874611_1877065_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX75664.1|1877188_1878139_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX75665.1|1878366_1879590_+	CoA transferase	NA	NA	NA	NA	NA
AZX75666.1|1879655_1880627_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX75667.1|1880639_1881095_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX75668.1|1881108_1881912_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX75669.1|1881908_1882340_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75670.1|1882336_1883494_+	thiolase	NA	NA	NA	NA	NA
AZX75671.1|1883515_1884292_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX75672.1|1886456_1887173_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX75673.1|1887165_1887807_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX75674.1|1887841_1888573_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75675.1|1888590_1888803_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75676.1|1889373_1890324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75677.1|1891881_1892610_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX75678.1|1892660_1893863_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX75679.1|1893940_1895977_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZX75680.1|1896229_1896721_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX75681.1|1896936_1897449_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX75682.1|1897466_1898678_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX75683.1|1898715_1899126_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX75684.1|1899127_1899451_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX75685.1|1899453_1899966_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX75686.1|1900095_1901958_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX75687.1|1901967_1902309_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX75688.1|1902308_1902503_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX75689.1|1902627_1903521_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX75690.1|1903517_1904468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75691.1|1904592_1905402_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX75692.1|1905602_1906553_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	1934336	1975027	4104306	tRNA,transposase,protease	Klosneuvirus(25.0%)	36	NA	NA
AZX75712.1|1934336_1936961_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX75713.1|1936947_1937202_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX75714.1|1937268_1937850_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75715.1|1938153_1938414_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX75716.1|1938579_1939203_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX75717.1|1939202_1939976_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX75718.1|1939972_1941181_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX75719.1|1941206_1941680_-	RidA family protein	NA	NA	NA	NA	NA
AZX75720.1|1941753_1942704_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75721.1|1942802_1943753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75722.1|1943851_1945201_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX75723.1|1945966_1946722_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX75724.1|1946814_1949697_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX75725.1|1950019_1950445_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX75726.1|1950472_1951621_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX75727.1|1951617_1952124_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX75728.1|1952130_1953426_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX75729.1|1953466_1954771_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX75730.1|1954772_1955411_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75731.1|1955413_1956574_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX75732.1|1956600_1957956_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX75733.1|1957959_1959030_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX75734.1|1959168_1959405_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX75735.1|1959492_1960599_+	GTPase HflX	NA	NA	NA	NA	NA
AZX75736.1|1960564_1961869_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX75737.1|1961887_1962787_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX75738.1|1962970_1964128_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX75739.1|1964192_1965500_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX75740.1|1965613_1966153_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX75741.1|1966430_1966643_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX75742.1|1966662_1968693_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX77592.1|1969492_1971661_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX75743.1|1972070_1972370_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75744.1|1972654_1973068_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX75745.1|1973027_1973978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75746.1|1974076_1975027_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	1986231	2035627	4104306	transposase	Klosneuvirus(16.67%)	44	NA	NA
AZX75760.1|1986231_1987182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75761.1|1987178_1988453_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX75762.1|1988550_1989750_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX75763.1|1989746_1990400_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX75764.1|1990396_1991833_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX75765.1|1991820_1992180_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX75766.1|1993152_1994103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75767.1|1995148_1997014_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX77594.1|1997271_1998792_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX75768.1|1998879_1999530_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZX75769.1|2000478_2001774_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX75770.1|2001795_2002680_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77595.1|2002778_2003654_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX75771.1|2003643_2004000_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX75772.1|2004073_2005105_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX75773.1|2005234_2005414_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX75774.1|2005511_2006036_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX75775.1|2006046_2006883_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX75776.1|2006995_2007367_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX75777.1|2007363_2007915_+	ATPase	NA	NA	NA	NA	NA
AZX75778.1|2007930_2009622_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX75779.1|2009670_2010351_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX75780.1|2010598_2011063_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75781.1|2011232_2012162_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX75782.1|2012174_2012822_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75783.1|2012895_2014713_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX75784.1|2014796_2015747_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75785.1|2016399_2017350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75786.1|2017368_2017716_-	GFA family protein	NA	NA	NA	NA	NA
AZX75787.1|2017744_2019184_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX75788.1|2019202_2019598_-	VOC family protein	NA	NA	NA	NA	NA
AZX75789.1|2019772_2020381_+	peptidase S16	NA	NA	NA	NA	NA
AZX75790.1|2020393_2021212_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX75791.1|2021163_2022138_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX75792.1|2022166_2023228_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75793.1|2023224_2025441_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX75794.1|2025454_2025913_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX75795.1|2026070_2026415_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75796.1|2026571_2027477_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77596.1|2027563_2028577_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX77597.1|2030556_2031573_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX75797.1|2031715_2033068_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX75798.1|2033242_2033539_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75799.1|2034676_2035627_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2047123	2111492	4104306	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZX75813.1|2047123_2048074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75814.1|2048060_2048252_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75815.1|2048295_2049246_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75816.1|2049344_2050310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX75817.1|2050447_2051347_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX75818.1|2053941_2055429_+	hypothetical protein	NA	NA	NA	NA	NA
AZX75819.1|2055439_2056636_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX75820.1|2056708_2058028_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX75821.1|2058024_2058900_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX75822.1|2058930_2060100_-	CoA transferase	NA	NA	NA	NA	NA
AZX75823.1|2060096_2060411_-	ferredoxin	NA	NA	NA	NA	NA
AZX75824.1|2060432_2061155_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX75825.1|2061154_2061973_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX75826.1|2061977_2062505_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX75827.1|2062510_2063776_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX75828.1|2064125_2065265_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX75829.1|2065342_2066215_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX75830.1|2067085_2068036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75831.1|2067995_2068631_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75832.1|2068990_2070313_-	isocitrate lyase	NA	NA	NA	NA	NA
AZX75833.1|2070541_2071453_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX75834.1|2072877_2073450_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX75835.1|2073489_2075319_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZX75836.1|2075281_2076340_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX75837.1|2076377_2076839_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZX75838.1|2076923_2077670_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX75839.1|2079160_2082391_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX75840.1|2082457_2083789_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX75841.1|2084041_2084416_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX75842.1|2084518_2085697_-	hypothetical protein	NA	NA	NA	NA	NA
AZX75843.1|2085707_2086298_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX77599.1|2086408_2087215_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX75844.1|2087240_2088035_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX75845.1|2089035_2090010_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX75846.1|2090168_2090681_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX75847.1|2090837_2091809_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX75848.1|2093553_2094360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX77600.1|2094356_2095493_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX75849.1|2095608_2096373_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX75850.1|2096486_2097257_-	spermidine synthase	NA	NA	NA	NA	NA
AZX75851.1|2097341_2098553_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX75852.1|2098601_2098976_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX75853.1|2099076_2100339_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX75854.1|2100335_2101193_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX75855.1|2101365_2102367_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX75856.1|2102818_2103769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75857.1|2105284_2106484_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX75858.1|2106852_2107089_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX75859.1|2107152_2107320_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX75860.1|2107433_2109329_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX75861.1|2109492_2110443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX75862.1|2110541_2111492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2297961	2359309	4104306	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZX75999.1|2297961_2298912_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76000.1|2299028_2299748_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76001.1|2299920_2300907_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76002.1|2300907_2301390_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX76003.1|2301393_2302677_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX76004.1|2302673_2303612_+	CoA ester lyase	NA	NA	NA	NA	NA
AZX76005.1|2303608_2305318_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX76006.1|2305327_2306575_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX77608.1|2308185_2309475_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX76007.1|2310612_2311386_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX76008.1|2312047_2312791_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76009.1|2312865_2313606_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76010.1|2313801_2314638_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76011.1|2314688_2315459_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX76012.1|2315508_2316561_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX76013.1|2316557_2317184_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX76014.1|2317180_2318227_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX76015.1|2318393_2319410_+	folate-binding protein	NA	NA	NA	NA	NA
AZX77609.1|2319508_2320459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76016.1|2323199_2324489_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX76017.1|2324607_2325078_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX76018.1|2325088_2326297_-	flavohemoprotein	NA	NA	NA	NA	NA
AZX76019.1|2326443_2326908_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX76020.1|2326931_2327882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76021.1|2328866_2329640_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76022.1|2329636_2330635_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76023.1|2330719_2331496_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX76024.1|2331651_2333319_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX76025.1|2333636_2334761_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76026.1|2334887_2335511_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76027.1|2335507_2337409_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX76028.1|2337457_2338252_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX76029.1|2338264_2339266_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX76030.1|2339262_2339769_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX76031.1|2339761_2340610_-	hydrolase	NA	NA	NA	NA	NA
AZX76032.1|2340707_2341250_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76033.1|2341293_2342244_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76034.1|2342399_2342726_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZX76035.1|2342722_2343007_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX76036.1|2343003_2343483_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX76037.1|2343479_2345108_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX76038.1|2345104_2345449_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX76039.1|2345448_2348382_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX76040.1|2349540_2350491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76041.1|2350589_2350886_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76042.1|2350992_2351910_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76043.1|2351914_2352628_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX76044.1|2352641_2353613_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76045.1|2355332_2355713_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76046.1|2355716_2356904_+	MFS transporter	NA	NA	NA	NA	NA
AZX77610.1|2357342_2358065_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX76047.1|2358358_2359309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2380100	2451254	4104306	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZX76062.1|2380100_2381051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76063.1|2381603_2383229_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX77615.1|2383278_2384313_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX76064.1|2384315_2385662_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77616.1|2385658_2387173_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX76065.1|2387163_2388174_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76066.1|2388647_2389589_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX76067.1|2389597_2390566_-	AAA family ATPase	NA	NA	NA	NA	NA
AZX76068.1|2392105_2393074_+	transporter	NA	NA	NA	NA	NA
AZX76069.1|2393251_2394241_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76070.1|2394287_2395046_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX76071.1|2395235_2395973_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX76072.1|2396071_2397022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76073.1|2397206_2397989_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX76074.1|2397982_2398684_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX76075.1|2398923_2399526_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76076.1|2400852_2401803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76077.1|2401799_2403356_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZX76078.1|2403348_2404122_-	oxidoreductase	NA	NA	NA	NA	NA
AZX76079.1|2404180_2405131_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76080.1|2405212_2406388_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX76081.1|2406401_2408459_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX76082.1|2408455_2409481_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX76083.1|2409492_2410782_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX76084.1|2410804_2411902_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX76085.1|2411898_2412789_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX76086.1|2412785_2414870_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX76087.1|2414901_2416071_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX76088.1|2416112_2416853_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX76089.1|2416852_2417623_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX76090.1|2418478_2419264_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX76091.1|2419290_2421375_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76092.1|2421542_2423498_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX77617.1|2423821_2424322_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX76093.1|2424420_2425947_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX77618.1|2426084_2426972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76094.1|2426986_2427940_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX76095.1|2427991_2430082_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZX76096.1|2430097_2430484_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX76097.1|2433177_2433981_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX76098.1|2435274_2436177_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76099.1|2436241_2437018_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX76100.1|2437339_2438389_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76101.1|2438512_2440183_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX76102.1|2440187_2440982_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX76103.1|2441080_2442031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76104.1|2442050_2442956_-	pirin family protein	NA	NA	NA	NA	NA
AZX76105.1|2443033_2443732_-	pirin family protein	NA	NA	NA	NA	NA
AZX76106.1|2443891_2444836_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76107.1|2444845_2446336_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX76108.1|2446332_2447400_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX76109.1|2447463_2448876_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX76110.1|2449061_2450282_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX76111.1|2450303_2451254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2492195	2554042	4104306	tRNA,transposase,protease	Planktothrix_phage(14.29%)	60	NA	NA
AZX76150.1|2492195_2493146_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76151.1|2493244_2493853_-	recombination protein RecR	NA	NA	NA	NA	NA
AZX76152.1|2493903_2494230_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX76153.1|2494276_2496502_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX76154.1|2497169_2500574_-	nuclease	NA	NA	NA	NA	NA
AZX76155.1|2500586_2503247_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76156.1|2503450_2504653_-	MFS transporter	NA	NA	NA	NA	NA
AZX76157.1|2505339_2506452_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX76158.1|2506458_2507409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76159.1|2507507_2507909_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX76160.1|2507981_2508560_-|protease	protease	protease	NA	NA	NA	NA
AZX77621.1|2508677_2509166_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX76161.1|2509179_2510112_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX76162.1|2510149_2511037_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX76163.1|2511194_2512889_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX76164.1|2512905_2514162_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX76165.1|2514299_2514845_-	acyl dehydratase	NA	NA	NA	NA	NA
AZX76166.1|2514876_2516436_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX76167.1|2516564_2517317_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX76168.1|2517338_2518031_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX76169.1|2518053_2518845_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76170.1|2518871_2519777_-	agmatinase	NA	NA	NA	NA	NA
AZX76171.1|2519969_2520806_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76172.1|2520897_2521920_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX76173.1|2522056_2523109_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX76174.1|2523113_2524304_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX76175.1|2524306_2524786_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX76176.1|2524971_2525451_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX76177.1|2525458_2525695_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76178.1|2525714_2526116_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX76179.1|2526118_2526370_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX76180.1|2526424_2527306_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX76181.1|2527530_2527977_+	GFA family protein	NA	NA	NA	NA	NA
AZX76182.1|2528061_2529126_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX76183.1|2529262_2529844_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX76184.1|2530078_2531209_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX76185.1|2531386_2532613_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX76186.1|2532671_2533187_+	transporter	NA	NA	NA	NA	NA
AZX76187.1|2533209_2533536_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX76188.1|2533569_2534760_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZX76189.1|2534833_2535238_+	GFA family protein	NA	NA	NA	NA	NA
AZX76190.1|2535454_2536405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76191.1|2536503_2537274_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX76192.1|2537270_2537942_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX76193.1|2537938_2538580_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX76194.1|2538592_2539513_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX76195.1|2539673_2540834_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76196.1|2540875_2541826_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX76197.1|2542424_2542649_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76198.1|2542813_2544508_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX76199.1|2544629_2544899_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX76200.1|2545014_2545413_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX76201.1|2545423_2546380_-	glutathione synthetase	NA	NA	NA	NA	NA
AZX76202.1|2546516_2547062_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX76203.1|2547082_2549032_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX76204.1|2549419_2550196_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX76205.1|2550201_2550594_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76206.1|2551015_2551966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76207.1|2551962_2553060_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX76208.1|2553091_2554042_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2683872	2724541	4104306	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
AZX76318.1|2683872_2684823_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76319.1|2684933_2685116_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76320.1|2685215_2685812_-	lipoprotein	NA	NA	NA	NA	NA
AZX76321.1|2685995_2687087_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76322.1|2687586_2687997_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76323.1|2688055_2688397_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX76324.1|2688402_2690820_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX76325.1|2690832_2691855_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX76326.1|2691929_2692289_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX76327.1|2692304_2692502_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX76328.1|2692837_2693788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76329.1|2693774_2693963_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76330.1|2693982_2694432_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX76331.1|2694428_2695379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76332.1|2695489_2696938_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX76333.1|2697052_2697334_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76334.1|2697437_2698388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76335.1|2698632_2699346_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX76336.1|2699468_2699696_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX76337.1|2699990_2700629_-	DedA family protein	NA	NA	NA	NA	NA
AZX76338.1|2700701_2701772_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX76339.1|2701768_2702719_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76340.1|2703134_2703659_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX76341.1|2703662_2703932_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76342.1|2704130_2705192_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX76343.1|2705275_2706910_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX76344.1|2706911_2707715_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76345.1|2707743_2708703_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76346.1|2708706_2710221_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76347.1|2710257_2711262_-	peptidase M20	NA	NA	NA	NA	NA
AZX76348.1|2711693_2712164_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX76349.1|2712199_2712811_-	LysE family translocator	NA	NA	NA	NA	NA
AZX76350.1|2712841_2713465_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX76351.1|2713545_2715078_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX76352.1|2715112_2716354_-	MFS transporter	NA	NA	NA	NA	NA
AZX76353.1|2716397_2717429_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX76354.1|2717425_2718595_-	amine oxidase	NA	NA	NA	NA	NA
AZX76355.1|2718588_2719269_-	anti-sigma factor	NA	NA	NA	NA	NA
AZX76356.1|2719430_2720273_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76357.1|2720435_2721407_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX76358.1|2721578_2722457_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX76359.1|2722479_2723550_-	FUSC family protein	NA	NA	NA	NA	NA
AZX76360.1|2723590_2724541_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2780006	2845901	4104306	tRNA,transposase	Moraxella_phage(20.0%)	51	NA	NA
AZX76404.1|2780006_2780423_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX76405.1|2780533_2781166_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX76406.1|2781194_2781638_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX76407.1|2781659_2782751_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76408.1|2782805_2783606_-	aldolase	NA	NA	NA	NA	NA
AZX76409.1|2783741_2784362_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX76410.1|2784501_2784975_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76411.1|2786114_2787065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76412.1|2787061_2794723_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX76413.1|2794963_2799010_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX76414.1|2799322_2799904_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX76415.1|2799900_2801199_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX76416.1|2801278_2802307_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX76417.1|2802230_2802581_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76418.1|2802567_2803518_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76419.1|2803514_2804465_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76420.1|2804781_2805387_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX76421.1|2805440_2806754_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX76422.1|2806828_2807299_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX76423.1|2807298_2808087_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX76424.1|2808097_2809750_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX76425.1|2809837_2810788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77632.1|2811949_2812456_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX76426.1|2812452_2813217_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX76427.1|2813232_2813517_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX76428.1|2813581_2814571_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX76429.1|2814742_2815672_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX76430.1|2815643_2816330_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX76431.1|2816363_2816909_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX76432.1|2816953_2818219_+	peptidase M48	NA	NA	NA	NA	NA
AZX76433.1|2818215_2819118_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX76434.1|2820299_2821244_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76435.1|2821338_2822856_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76436.1|2822897_2824526_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX76437.1|2824633_2825515_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76438.1|2828627_2829002_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX76439.1|2829026_2829365_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX76440.1|2829408_2831043_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX76441.1|2831081_2832428_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX77633.1|2832535_2833957_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX76442.1|2834026_2834611_-	nitroreductase	NA	NA	NA	NA	NA
AZX76443.1|2834713_2835664_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76444.1|2835798_2836905_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76445.1|2836915_2838013_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX76446.1|2838157_2839363_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX76447.1|2839369_2839891_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX76448.1|2839887_2840379_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX76449.1|2840375_2840627_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX76450.1|2840607_2841093_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX76451.1|2841228_2844690_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76452.1|2844950_2845901_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2852908	2923880	4104306	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX77636.1|2852908_2853925_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX76458.1|2854116_2856453_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX76459.1|2856535_2856970_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX76460.1|2857068_2858019_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76461.1|2858117_2859068_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76462.1|2859064_2859859_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX76463.1|2859890_2860595_-	oxidoreductase	NA	NA	NA	NA	NA
AZX76464.1|2860669_2861470_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX76465.1|2861466_2861874_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX76466.1|2861870_2862512_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX76467.1|2862504_2864526_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX76468.1|2865765_2867097_+	MFS transporter	NA	NA	NA	NA	NA
AZX76469.1|2867093_2868044_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76470.1|2869750_2870056_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76471.1|2870724_2871063_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX76472.1|2875617_2876220_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76473.1|2876316_2877606_+	MFS transporter	NA	NA	NA	NA	NA
AZX76474.1|2877663_2878395_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX76475.1|2878391_2879195_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX76476.1|2879191_2880280_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX76477.1|2880276_2881206_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX76478.1|2881354_2882500_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76479.1|2882521_2883472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76480.1|2883802_2887624_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX76481.1|2887780_2888449_-	lipoprotein	NA	NA	NA	NA	NA
AZX76482.1|2888453_2890127_-	MCE family protein	NA	NA	NA	NA	NA
AZX76483.1|2890145_2891465_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX76484.1|2891469_2893821_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX77637.1|2893840_2896009_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX76485.1|2896005_2901195_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX76486.1|2901284_2901599_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX76487.1|2901826_2902072_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX76488.1|2902166_2902685_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX76489.1|2902784_2903990_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX76490.1|2904105_2905503_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX76491.1|2905619_2906198_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX76492.1|2906270_2907662_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX76493.1|2907829_2908780_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76494.1|2909060_2909681_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX76495.1|2909677_2910091_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX76496.1|2910087_2911131_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX76497.1|2911186_2911375_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76498.1|2911384_2912149_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX76499.1|2912239_2912896_+	adenylate kinase	NA	NA	NA	NA	NA
AZX76500.1|2912987_2913746_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX76501.1|2913771_2915373_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX76502.1|2915573_2916578_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX76503.1|2916678_2916942_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX76504.1|2917059_2917836_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX76505.1|2918426_2919377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76506.1|2921760_2922873_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX76507.1|2922929_2923880_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	2954266	3047254	4104306	transposase	Bacillus_virus(27.27%)	89	NA	NA
AZX76536.1|2954266_2955217_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76537.1|2955203_2955449_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76538.1|2955337_2956234_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX76539.1|2958511_2960737_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX76540.1|2960901_2961990_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX76541.1|2961946_2962600_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX76542.1|2962647_2963445_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76543.1|2963976_2964927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76544.1|2965007_2966156_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX76545.1|2966212_2967163_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76546.1|2967149_2967368_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76547.1|2967261_2967567_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX76548.1|2967595_2968030_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX76549.1|2968031_2969276_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX76550.1|2969272_2969983_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77639.1|2969997_2970909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76551.1|2971271_2971676_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76552.1|2971672_2972131_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76553.1|2972137_2973046_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77640.1|2973042_2973909_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX76554.1|2973895_2974723_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX76555.1|2974733_2975861_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX76556.1|2976938_2978177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76557.1|2978218_2979481_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76558.1|2979487_2980240_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX76559.1|2980291_2980477_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76560.1|2980752_2981217_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX76561.1|2981248_2981908_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX76562.1|2982052_2984161_+	AsmA family protein	NA	NA	NA	NA	NA
AZX76563.1|2984157_2985108_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76564.1|2985211_2985832_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77641.1|2985935_2986676_+	oxidoreductase	NA	NA	NA	NA	NA
AZX76565.1|2987810_2988935_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76566.1|2988980_2989349_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76567.1|2989590_2990541_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76568.1|2991576_2992119_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76569.1|2992323_2992518_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76570.1|2992504_2993455_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76571.1|2993451_2994417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76572.1|2994486_2995323_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX76573.1|2995799_2996945_+	porin	NA	NA	NA	NA	NA
AZX76574.1|2997006_2997957_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76575.1|2998149_2998932_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX77642.1|2998945_2999695_-	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX77643.1|2999722_3001069_-	MFS transporter	NA	NA	NA	NA	NA
AZX76576.1|3001094_3002024_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX76577.1|3002139_3003045_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76578.1|3003062_3004262_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX76579.1|3004334_3005027_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX77644.1|3005075_3007565_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX76580.1|3007546_3008497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76581.1|3008713_3009082_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX76582.1|3009368_3010295_+	VOC family protein	NA	NA	NA	NA	NA
AZX76583.1|3010338_3011349_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX76584.1|3011345_3011780_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX76585.1|3012905_3013694_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX76586.1|3013703_3014486_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX76587.1|3014489_3015581_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX76588.1|3015686_3017162_+	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX76589.1|3017303_3017852_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX76590.1|3017867_3018329_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX76591.1|3018429_3019419_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76592.1|3019717_3020419_+	riboflavin synthase	NA	NA	NA	NA	NA
AZX76593.1|3020457_3021831_-	amidase	NA	NA	NA	NA	NA
AZX76594.1|3021869_3023156_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76595.1|3024042_3024945_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76596.1|3024892_3026113_-	MFS transporter	NA	NA	NA	NA	NA
AZX76597.1|3026109_3026619_-	nucleoside deaminase	NA	NA	NA	NA	NA
AZX76598.1|3026608_3027304_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX76599.1|3027374_3028244_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76600.1|3028593_3029544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77645.1|3030404_3031094_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX76601.1|3031870_3032833_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX76602.1|3032836_3033697_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX76603.1|3033690_3034083_-	RidA family protein	NA	NA	NA	NA	NA
AZX76604.1|3034113_3035286_-	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX76605.1|3036737_3037535_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76606.1|3037568_3038348_-	KR domain-containing protein	NA	NA	NA	NA	NA
AZX76607.1|3038376_3039249_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76608.1|3039270_3040020_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX77646.1|3040027_3040885_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76609.1|3040925_3041489_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76610.1|3041519_3041816_-	histidine kinase	NA	NA	NA	NA	NA
AZX76611.1|3041896_3042700_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX76612.1|3042720_3043917_-	CoA transferase	NA	NA	NA	NA	NA
AZX76613.1|3043919_3044921_-	amidase	NA	NA	NA	NA	NA
AZX76614.1|3045025_3045436_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76615.1|3045538_3046201_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76616.1|3046303_3047254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	3231472	3266310	4104306	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZX76757.1|3231472_3232423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76758.1|3232867_3233179_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX76759.1|3233178_3233709_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76760.1|3233871_3234822_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76761.1|3234920_3235871_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76762.1|3236160_3236625_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX76763.1|3236639_3238145_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX76764.1|3238398_3240006_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX76765.1|3240061_3240967_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX76766.1|3241407_3242358_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76767.1|3242439_3243021_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX77659.1|3243445_3243751_+	RND transporter	NA	NA	NA	NA	NA
AZX76768.1|3243764_3245099_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX76769.1|3245120_3245660_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX76770.1|3245807_3246272_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX76771.1|3246414_3247530_-	GTP-binding protein	NA	NA	NA	NA	NA
AZX76772.1|3247806_3248310_-	transcriptional repressor	NA	NA	NA	NA	NA
AZX76773.1|3248447_3248648_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76774.1|3248638_3249361_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX76775.1|3249357_3250254_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX76776.1|3250250_3251186_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77660.1|3251191_3251815_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX76777.1|3251805_3252774_+	nickel transporter	NA	NA	NA	NA	NA
AZX76778.1|3252822_3254964_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX76779.1|3254976_3255957_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX76780.1|3255971_3256664_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX76781.1|3256690_3257602_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX76782.1|3257644_3258535_-	acyltransferase	NA	NA	NA	NA	NA
AZX76783.1|3258531_3259386_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX76784.1|3259534_3260833_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX76785.1|3260943_3261195_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX76786.1|3261274_3262315_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX76787.1|3262594_3264013_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX76788.1|3264083_3264419_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX76789.1|3264418_3265261_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX76790.1|3265359_3266310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	3278139	3329018	4104306	tRNA,transposase,integrase,protease	Planktothrix_phage(33.33%)	40	3311814:3311832	3331702:3331720
AZX76799.1|3278139_3279090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77662.1|3279402_3280881_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX76800.1|3280887_3281997_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX76801.1|3282008_3282689_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX76802.1|3282710_3283466_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77663.1|3283601_3284486_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX76803.1|3284573_3285155_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76804.1|3285247_3285370_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76805.1|3285415_3285715_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX77664.1|3285866_3286292_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76806.1|3288498_3289002_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX76807.1|3289017_3289968_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76808.1|3289954_3290152_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76809.1|3290495_3291269_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76810.1|3291401_3292412_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76811.1|3292563_3294219_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX76812.1|3294273_3294615_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX76813.1|3294628_3296068_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX76814.1|3296200_3297016_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76815.1|3297034_3297223_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76816.1|3297209_3298160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76817.1|3299547_3300495_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76818.1|3300721_3301462_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76819.1|3301547_3302498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76820.1|3303939_3305511_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX76821.1|3305843_3307697_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76822.1|3307741_3310306_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX76823.1|3310724_3311675_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3311814:3311832	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX76824.1|3314540_3315035_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX76825.1|3315051_3316002_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76826.1|3315988_3316189_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76827.1|3316185_3317397_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX76828.1|3317412_3320364_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX76829.1|3320365_3323485_-	restriction endonuclease	NA	NA	NA	NA	NA
AZX77665.1|3323481_3323622_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX76830.1|3323632_3324679_-	Fic family protein	NA	NA	NA	NA	NA
AZX76831.1|3325020_3326148_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX76832.1|3326427_3327519_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX76833.1|3327591_3328374_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX76834.1|3328370_3329018_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3331702:3331720	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 27
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	3377905	3498151	4104306	tRNA,transposase	Acinetobacter_phage(20.0%)	100	NA	NA
AZX76871.1|3377905_3378856_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76872.1|3379260_3379905_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX76873.1|3379929_3380514_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX76874.1|3380614_3381232_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX76875.1|3381234_3382950_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX76876.1|3382946_3383255_-	urease subunit beta	NA	NA	NA	NA	NA
AZX76877.1|3383271_3383907_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX76878.1|3383933_3384236_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX76879.1|3384336_3385191_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX76880.1|3385772_3386045_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX76881.1|3386462_3386870_-	GFA family protein	NA	NA	NA	NA	NA
AZX76882.1|3387239_3388034_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76883.1|3388134_3389370_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX76884.1|3389438_3390455_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76885.1|3390451_3391843_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX76886.1|3391839_3393036_+	MFS transporter	NA	NA	NA	NA	NA
AZX76887.1|3393032_3394571_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX76888.1|3394567_3395827_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76889.1|3397767_3398718_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76890.1|3398816_3399767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76891.1|3400533_3401628_-	CoA transferase	NA	NA	NA	NA	NA
AZX76892.1|3401620_3402955_-	CoA ligase	NA	NA	NA	NA	NA
AZX76893.1|3402908_3403592_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76894.1|3403617_3404781_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX76895.1|3404777_3405779_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX76896.1|3405778_3406651_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX76897.1|3406647_3407397_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX76898.1|3407393_3408185_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX76899.1|3408181_3409321_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76900.1|3409629_3410382_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX76901.1|3410415_3411198_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX76902.1|3411201_3411591_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX76903.1|3412730_3413594_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX76904.1|3413629_3414718_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76905.1|3414714_3415665_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76906.1|3415651_3416020_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76907.1|3416018_3418997_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76908.1|3419923_3420802_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX76909.1|3422750_3423701_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76910.1|3423697_3424165_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX76911.1|3424207_3424978_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX76912.1|3424998_3425799_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX76913.1|3425809_3427219_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX76914.1|3427313_3428099_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX77668.1|3428338_3429355_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX76915.1|3429462_3429855_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX76916.1|3429992_3430673_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX76917.1|3430677_3431676_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76918.1|3431744_3432695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76919.1|3434199_3434901_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX76920.1|3434900_3436325_+	ATP-binding protein	NA	NA	NA	NA	NA
AZX76921.1|3437394_3438735_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX76922.1|3438850_3440614_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX76923.1|3440725_3441604_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX76924.1|3441716_3442532_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX76925.1|3442535_3442787_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX77669.1|3442871_3443888_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX76926.1|3444218_3444440_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76927.1|3446800_3447718_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX76928.1|3448215_3449424_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76929.1|3449503_3451075_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX76930.1|3451192_3452128_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX76931.1|3452316_3453261_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX76932.1|3453329_3453545_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76933.1|3453828_3459546_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX76934.1|3459551_3460679_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX76935.1|3460734_3461361_+	aminotransferase	NA	NA	NA	NA	NA
AZX77670.1|3461632_3462649_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX76936.1|3462744_3463455_-	oxidoreductase	NA	NA	NA	NA	NA
AZX77671.1|3463451_3464441_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX76937.1|3464572_3466168_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX76938.1|3466170_3466908_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76939.1|3467063_3467936_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX76940.1|3468204_3469425_+	MFS transporter	NA	NA	NA	NA	NA
AZX76941.1|3469421_3470081_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX76942.1|3470152_3470785_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX76943.1|3470814_3471333_+	flavin reductase	NA	NA	NA	NA	NA
AZX76944.1|3471343_3472453_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX76945.1|3472499_3473354_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX76946.1|3473355_3474258_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76947.1|3475480_3476431_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76948.1|3478188_3479178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76949.1|3479353_3480142_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX76950.1|3480138_3481170_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX76951.1|3481188_3481752_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX76952.1|3481807_3483328_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX76953.1|3483591_3484296_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX76954.1|3484303_3485041_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX76955.1|3485146_3485521_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX76956.1|3485563_3486853_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76957.1|3486849_3488019_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX76958.1|3488015_3488855_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX76959.1|3488914_3489850_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX76960.1|3489862_3490813_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76961.1|3490911_3491874_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX76962.1|3491905_3492265_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX76963.1|3492389_3493292_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX76964.1|3493293_3495066_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX76965.1|3495100_3495877_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX76966.1|3497200_3498151_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	3513089	3571162	4104306	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZX76978.1|3513089_3514040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76979.1|3514168_3515302_-	peptidase	NA	NA	NA	NA	NA
AZX76980.1|3515345_3516251_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX76981.1|3516253_3517954_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX76982.1|3517950_3518871_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76983.1|3518878_3519856_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX76984.1|3519914_3520949_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX76985.1|3522923_3523160_-	hypothetical protein	NA	NA	NA	NA	NA
AZX76986.1|3523286_3524150_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX76987.1|3524238_3525060_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX76988.1|3525139_3525877_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX76989.1|3525873_3526866_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX76990.1|3526979_3527642_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76991.1|3527686_3528835_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX76992.1|3531158_3532109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76993.1|3532449_3533400_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76994.1|3533498_3534449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX76995.1|3534745_3535243_+	hypothetical protein	NA	NA	NA	NA	NA
AZX76996.1|3535285_3537061_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX77674.1|3537107_3537935_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX76997.1|3537941_3538676_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX76998.1|3539845_3540640_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX76999.1|3540929_3541520_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX77000.1|3541553_3542882_-	amidase	NA	NA	NA	NA	NA
AZX77001.1|3542956_3544102_-	transporter	NA	NA	NA	NA	NA
AZX77002.1|3544213_3545212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77003.1|3545174_3545609_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX77004.1|3547125_3548010_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX77005.1|3548006_3549212_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX77006.1|3549208_3550069_-	endonuclease	NA	NA	NA	NA	NA
AZX77007.1|3550181_3551972_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX77008.1|3552012_3552678_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX77009.1|3552678_3552987_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX77675.1|3553152_3554439_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77010.1|3555872_3556823_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77011.1|3558774_3559989_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX77012.1|3560094_3561084_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX77013.1|3561080_3561689_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX77014.1|3561701_3562331_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX77015.1|3562327_3562948_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX77016.1|3562979_3563771_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX77017.1|3564613_3565078_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX77018.1|3565096_3566023_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX77019.1|3566076_3567363_-	cytochrome c	NA	NA	NA	NA	NA
AZX77020.1|3568293_3569166_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX77021.1|3569162_3570113_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX77022.1|3570211_3571162_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025373	Bordetella pertussis strain H541 chromosome, complete genome	4104306	4003374	4068286	4104306	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX77411.1|4003374_4003860_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77412.1|4004078_4005059_+	protein BugT	NA	NA	NA	NA	NA
AZX77413.1|4005325_4006135_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX77414.1|4006174_4006855_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX77415.1|4006848_4007307_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX77416.1|4007318_4007681_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX77417.1|4007763_4008447_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX77418.1|4008502_4008811_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX77419.1|4008829_4009144_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX77420.1|4009140_4011615_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX77421.1|4011622_4013014_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX77422.1|4013010_4013196_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX77423.1|4013174_4013876_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX77424.1|4013872_4014694_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX77696.1|4014674_4015799_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX77425.1|4015791_4016811_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX77426.1|4017016_4018051_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX77697.1|4018151_4018943_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX77427.1|4019025_4019400_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX77428.1|4019377_4020787_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX77429.1|4020779_4022162_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX77430.1|4022496_4024101_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77431.1|4024136_4025150_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX77432.1|4025160_4026087_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX77433.1|4026477_4027428_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77434.1|4027597_4028824_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX77435.1|4029023_4029890_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX77436.1|4029882_4030845_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX77437.1|4030945_4031896_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77438.1|4031994_4032945_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77439.1|4033043_4033994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77440.1|4033990_4035484_-	RND transporter	NA	NA	NA	NA	NA
AZX77441.1|4035480_4038588_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX77442.1|4038584_4041653_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX77443.1|4041649_4042900_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX77444.1|4043080_4043842_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX77445.1|4043874_4044525_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX77446.1|4044527_4045367_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX77447.1|4045607_4046351_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77448.1|4046433_4046781_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77449.1|4046878_4047721_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX77450.1|4047765_4048653_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX77451.1|4048679_4048868_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX77452.1|4048965_4050423_+	MFS transporter	NA	NA	NA	NA	NA
AZX77453.1|4050409_4051936_+	glycerol kinase	NA	NA	NA	NA	NA
AZX77454.1|4051954_4052422_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77455.1|4052421_4053444_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX77456.1|4053564_4054305_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX77457.1|4054359_4055460_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX77458.1|4055461_4056652_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX77459.1|4056771_4057788_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX77460.1|4058106_4058778_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX77461.1|4058774_4059683_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX77462.1|4059894_4060542_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX77463.1|4064393_4065470_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX77464.1|4065480_4066290_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX77465.1|4066379_4067153_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX77466.1|4067335_4068286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
