The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	0	122073	4106328	transposase,protease,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZX34587.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX34588.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX34589.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX34590.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX34591.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX34592.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX34593.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX34594.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX34595.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX34596.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX34597.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX34598.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX34599.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX34600.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX37973.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX34601.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34602.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX34603.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX34604.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34605.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX34606.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34607.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX34608.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX37974.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX34609.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX34610.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX34611.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34612.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX34613.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX34614.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX34615.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX34616.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX34617.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX34618.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX34619.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX34620.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX34621.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34622.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34623.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX34624.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34625.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX34626.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX34627.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34628.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX34629.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX34630.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX34631.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX34632.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX34633.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX34634.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34635.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX34636.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX34637.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34638.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34639.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX34640.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX34641.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX34642.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX34643.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34644.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34645.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX34646.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX34647.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX34648.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX34649.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37975.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34650.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX34651.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37976.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34652.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX34653.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX34654.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX34655.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX34656.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX34657.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX34658.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX34659.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX34660.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX34661.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX37977.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX34662.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX34663.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34664.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX34665.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX34666.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX34667.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX34668.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34669.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX34670.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX34671.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX34672.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX34673.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX34674.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX34675.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX34676.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX34677.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX34678.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34679.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX34680.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX34681.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX34682.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX37978.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX34683.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37979.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX34684.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX34685.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX34686.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX34687.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX34688.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX34689.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	164895	225406	4106328	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX34719.1|164895_165846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34720.1|167289_168192_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34721.1|168169_168799_-	LemA family protein	NA	NA	NA	NA	NA
AZX34722.1|169129_170512_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX34723.1|170545_171175_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX34724.1|171223_172831_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX34725.1|172855_173539_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37986.1|173620_174097_-	bacterioferritin	NA	NA	NA	NA	NA
AZX34726.1|174303_175254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34727.1|176369_176897_+	lipoprotein	NA	NA	NA	NA	NA
AZX34728.1|176988_177804_+	lipoprotein	NA	NA	NA	NA	NA
AZX34729.1|177864_178599_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX34730.1|178636_180715_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX34731.1|180964_181237_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34732.1|181335_182424_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX34733.1|182427_184332_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX34734.1|184328_188003_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX34735.1|188063_188627_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX34736.1|188634_189057_-	glyoxalase	NA	NA	NA	NA	NA
AZX34737.1|189084_189504_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX37987.1|189532_189979_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX34738.1|190105_190603_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34739.1|190757_193028_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX34740.1|193076_194309_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX34741.1|194407_195358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34742.1|195403_196096_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX34743.1|196092_196986_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX34744.1|197380_198481_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX34745.1|198562_198937_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX34746.1|198996_201861_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX34747.1|202005_202746_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX34748.1|202815_204027_+	CoA transferase	NA	NA	NA	NA	NA
AZX34749.1|204055_205024_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX34750.1|205637_206588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34751.1|206744_207068_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX34752.1|207172_208222_-	cyclase	NA	NA	NA	NA	NA
AZX34753.1|208218_209043_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX34754.1|209043_209340_-	YciI family protein	NA	NA	NA	NA	NA
AZX34755.1|209365_209641_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX34756.1|209697_210342_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX34757.1|210341_211028_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX37988.1|211157_212009_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX34758.1|212059_212785_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX34759.1|212816_214166_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX34760.1|214277_215210_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX34761.1|215667_218463_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX34762.1|219056_221999_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX34763.1|222070_222790_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX34764.1|222828_223377_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX34765.1|223531_224431_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX34766.1|224455_225406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	233338	286926	4106328	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZX34774.1|233338_234289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34775.1|234375_235326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34776.1|235322_236273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34777.1|236371_237169_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX34778.1|238118_238529_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX34779.1|239550_240294_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX34780.1|240337_241381_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX34781.1|241551_243654_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34782.1|245064_246021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX34783.1|246039_246531_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX34784.1|246527_247883_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX34785.1|247883_248582_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX34786.1|248578_249280_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX34787.1|249532_250582_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX34788.1|250687_251629_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX34789.1|251625_253515_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX34790.1|253601_254240_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37989.1|254382_255627_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX34791.1|255698_256235_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX34792.1|256386_257778_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX34793.1|257794_258775_-	AEC family transporter	NA	NA	NA	NA	NA
AZX34794.1|258910_259894_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX34795.1|259958_260858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX34796.1|260964_262719_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX34797.1|262726_263851_-	CoA transferase	NA	NA	NA	NA	NA
AZX34798.1|263864_264845_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX34799.1|265575_266526_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34800.1|267085_267631_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX34801.1|267714_269334_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX34802.1|269349_270504_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX34803.1|270517_270643_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX34804.1|270639_272391_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX34805.1|272387_274067_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX34806.1|274102_274678_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX34807.1|275820_276099_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX34808.1|277142_278093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34809.1|278079_278295_-	hypothetical protein	NA	NA	NA	NA	NA
AZX34810.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX34811.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34812.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX34813.1|279657_280269_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX34814.1|280427_281282_-	cytochrome c1	NA	NA	NA	NA	NA
AZX34815.1|281301_282684_-	cytochrome b	NA	NA	NA	NA	NA
AZX34816.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX34817.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX34818.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX37990.1|284842_285979_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX34819.1|285975_286926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	466029	585349	4106328	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
AZX34973.1|466029_468405_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX34974.1|468503_469454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34975.1|470176_471451_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX34976.1|471537_472620_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX34977.1|472630_473443_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX34978.1|473479_473806_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX34979.1|473810_474371_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX34980.1|474611_475604_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX34981.1|475622_476618_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX34982.1|476633_478010_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX34983.1|478002_480384_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX38005.1|480400_480790_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38006.1|480916_481147_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34984.1|481251_482202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX34985.1|482300_483251_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX34986.1|483247_484120_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX34987.1|485050_486337_+	cytochrome c	NA	NA	NA	NA	NA
AZX34988.1|486390_487317_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX34989.1|487335_487800_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX34990.1|488642_489434_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX34991.1|489465_490086_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX34992.1|490082_490712_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX34993.1|490724_491333_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX34994.1|491329_492319_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX34995.1|492424_493639_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX34996.1|495590_496541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX38007.1|497974_499261_+	hypothetical protein	NA	NA	NA	NA	NA
AZX34997.1|499426_499735_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX34998.1|499735_500401_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX34999.1|500441_502232_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX35000.1|502344_503205_+	endonuclease	NA	NA	NA	NA	NA
AZX35001.1|503201_504407_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX35002.1|504403_505288_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX35003.1|506804_507239_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX35004.1|507201_508200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35005.1|508311_509457_+	transporter	NA	NA	NA	NA	NA
AZX35006.1|509531_510860_+	amidase	NA	NA	NA	NA	NA
AZX35007.1|510893_511484_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX35008.1|511773_512568_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35009.1|513737_514472_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX38008.1|514478_515306_-	copper resistance protein B	NA	NA	NA	NA	NA
AZX35010.1|515352_517128_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX35011.1|517170_517668_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35012.1|517964_518915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35013.1|519013_519964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35014.1|520304_521255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35015.1|523578_524727_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX35016.1|524771_525434_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35017.1|525547_526540_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX35018.1|526536_527274_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX35019.1|527353_528175_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX35020.1|528263_529127_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX35021.1|529253_529490_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35022.1|531464_532499_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX35023.1|532557_533535_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX35024.1|533542_534463_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX35025.1|534459_536160_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX35026.1|536162_537068_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX35027.1|537111_538245_+	peptidase	NA	NA	NA	NA	NA
AZX35028.1|538373_539324_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35029.1|539422_541492_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZX35030.1|541534_543637_-	primosomal protein N'	NA	NA	NA	NA	NA
AZX35031.1|543943_545020_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZX38009.1|545095_545980_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35032.1|546162_546585_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZX35033.1|546594_547995_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZX35034.1|548037_548943_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZX35035.1|549041_550583_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZX35036.1|550617_551157_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZX35037.1|551169_551640_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZX35038.1|551777_552020_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZX35039.1|552136_553018_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZX38010.1|553090_553411_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX35040.1|554262_555213_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35041.1|556536_557313_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX35042.1|557347_559120_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX35043.1|559121_560024_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX35044.1|560148_560508_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX35045.1|560539_561502_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX35046.1|561600_562551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35047.1|562563_563499_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX35048.1|563558_564398_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX35049.1|564394_565564_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX35050.1|565560_566850_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35051.1|566892_567267_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX35052.1|567372_568110_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX35053.1|568117_568822_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX35054.1|569085_570606_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX35055.1|570661_571225_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX35056.1|571243_572275_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX35057.1|572271_573060_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX35058.1|573235_574225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35059.1|575981_576932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35060.1|578154_579057_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35061.1|579058_579913_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX35062.1|579959_581069_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX35063.1|581079_581598_-	flavin reductase	NA	NA	NA	NA	NA
AZX35064.1|581627_582260_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX35065.1|582331_582991_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX35066.1|582987_584208_-	MFS transporter	NA	NA	NA	NA	NA
AZX35067.1|584476_585349_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	589763	653596	4106328	transposase,tRNA	Pandoravirus(12.5%)	49	NA	NA
AZX38012.1|589763_590780_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX35071.1|591051_591678_-	aminotransferase	NA	NA	NA	NA	NA
AZX35072.1|591733_592861_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX35073.1|592866_598584_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX35074.1|598867_599083_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35075.1|599151_600096_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX35076.1|600284_601220_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX35077.1|601337_602909_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35078.1|602988_604197_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX35079.1|604694_605612_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX35080.1|607972_608194_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38013.1|608524_609541_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX35081.1|609625_609877_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX35082.1|609880_610696_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX35083.1|610808_611687_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX35084.1|611798_613562_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX35085.1|613677_615018_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX35086.1|616087_617512_-	ATP-binding protein	NA	NA	NA	NA	NA
AZX35087.1|617511_618213_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX35088.1|619717_620668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35089.1|620736_621735_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35090.1|621739_622420_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX35091.1|622557_622950_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX38014.1|623057_624074_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX35092.1|624313_625099_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX35093.1|625193_626603_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX35094.1|626613_627414_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX35095.1|627434_628205_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX35096.1|628247_628715_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX35097.1|628711_629662_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35098.1|631610_632489_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX35099.1|633415_636394_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35100.1|636392_636761_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35101.1|636747_637698_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35102.1|637694_638783_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35103.1|638818_639682_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX35104.1|640821_641211_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX35105.1|641214_641997_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX35106.1|642030_642783_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX35107.1|643091_644231_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35108.1|644227_645019_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX35109.1|645015_645765_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX35110.1|645761_646634_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX35111.1|646633_647635_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX35112.1|647631_648795_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX35113.1|648820_649504_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35114.1|649457_650792_+	CoA ligase	NA	NA	NA	NA	NA
AZX35115.1|650784_651879_+	CoA transferase	NA	NA	NA	NA	NA
AZX38015.1|652645_653596_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	672507	749816	4106328	transposase,protease,integrase,tRNA	Bacillus_phage(20.0%)	59	719644:719662	739532:739550
AZX35133.1|672507_673458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35134.1|673556_675032_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX35135.1|676619_677507_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX35136.1|677509_678451_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX35137.1|678496_680062_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX38016.1|681839_683123_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZX35138.1|683347_684805_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZX35139.1|684768_685272_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZX35140.1|685296_686268_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZX35141.1|686320_686758_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX35142.1|686881_687550_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZX35143.1|688278_689382_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX35144.1|689487_690762_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX35145.1|690773_691799_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX35146.1|691800_693171_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35147.1|693171_694308_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX35148.1|694354_696280_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZX35149.1|696276_697398_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX35150.1|697394_698549_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX35151.1|698545_699676_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX35152.1|699683_701249_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX35153.1|701255_702638_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZX35154.1|702916_703528_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35155.1|703619_705035_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX35156.1|705052_705763_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX35157.1|705759_707082_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZX35158.1|707161_709123_+	sulfatase	NA	NA	NA	NA	NA
AZX35159.1|709248_710562_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZX35160.1|710670_711969_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZX35161.1|712151_713060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35162.1|713069_713279_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZX35163.1|713290_714970_-	oxidoreductase	NA	NA	NA	NA	NA
AZX35164.1|715071_716025_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX35165.1|716115_716943_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZX35166.1|716941_718828_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX35167.1|718824_719424_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZX35168.1|719472_720372_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719644:719662	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX38017.1|720598_721531_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZX35169.1|721653_722268_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZX35170.1|722345_722993_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX35171.1|722989_723772_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX35172.1|723844_724936_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX35173.1|725215_726343_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX35174.1|726684_727731_+	Fic family protein	NA	NA	NA	NA	NA
AZX38018.1|727741_727882_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX35175.1|727878_730998_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX35176.1|730999_733951_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX35177.1|733966_735178_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX35178.1|735174_735375_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35179.1|735361_736312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35180.1|736328_736823_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX35181.1|736826_737084_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35182.1|737108_738539_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX35183.1|738608_738905_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AZX35184.1|739688_740639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
739532:739550	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX35185.1|741057_743622_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX35186.1|743666_745520_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35187.1|745852_747424_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX35188.1|748865_749816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1004105	1098142	4106328	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZX35390.1|1004105_1005056_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35391.1|1005158_1005821_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35392.1|1005923_1006334_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35393.1|1006438_1007440_+	amidase	NA	NA	NA	NA	NA
AZX35394.1|1007442_1008639_+	CoA transferase	NA	NA	NA	NA	NA
AZX35395.1|1008659_1009463_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX35396.1|1009543_1009840_+	histidine kinase	NA	NA	NA	NA	NA
AZX35397.1|1009870_1010434_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX38038.1|1010474_1011332_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX35398.1|1011339_1012089_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX35399.1|1012110_1012983_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35400.1|1013011_1013791_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX35401.1|1013824_1014622_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35402.1|1016073_1017246_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX35403.1|1017276_1017669_+	RidA family protein	NA	NA	NA	NA	NA
AZX35404.1|1017662_1018523_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX35405.1|1018526_1019489_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX38039.1|1020265_1020955_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX35406.1|1021815_1022766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35407.1|1023115_1023985_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35408.1|1024055_1024751_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX35409.1|1024740_1025250_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX35410.1|1025246_1026467_+	MFS transporter	NA	NA	NA	NA	NA
AZX35411.1|1026414_1027317_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35412.1|1028203_1029490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35413.1|1029528_1030902_+	amidase	NA	NA	NA	NA	NA
AZX35414.1|1030940_1031642_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX35415.1|1031940_1032930_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35416.1|1033030_1033492_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX35417.1|1033507_1034056_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX35418.1|1034197_1035673_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX35419.1|1035778_1036870_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX35420.1|1036873_1037656_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX35421.1|1037665_1038454_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX35422.1|1039579_1040014_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX35423.1|1040010_1041021_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX35424.1|1041064_1041991_-	VOC family protein	NA	NA	NA	NA	NA
AZX35425.1|1042277_1042646_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX38040.1|1042862_1043813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX38041.1|1043794_1046284_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX35426.1|1046332_1047025_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX35427.1|1047097_1048297_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX35428.1|1048314_1049220_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35429.1|1049335_1050265_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX35430.1|1050290_1051637_+	MFS transporter	NA	NA	NA	NA	NA
AZX38042.1|1051664_1052414_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX35431.1|1052427_1053210_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX35432.1|1053402_1054353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35433.1|1054414_1055560_-	porin	NA	NA	NA	NA	NA
AZX35434.1|1056036_1056873_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX35435.1|1056942_1057908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35436.1|1057904_1058855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35437.1|1058841_1059036_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35438.1|1059240_1059783_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35439.1|1060818_1061769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35440.1|1062010_1062379_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35441.1|1062424_1063549_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38043.1|1064683_1065424_-	oxidoreductase	NA	NA	NA	NA	NA
AZX35442.1|1065527_1066148_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35443.1|1066251_1067202_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35444.1|1067198_1069307_-	AsmA family protein	NA	NA	NA	NA	NA
AZX35445.1|1069451_1070111_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX38044.1|1070142_1070607_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX35446.1|1070882_1071068_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35447.1|1071119_1071872_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX35448.1|1071878_1073141_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35449.1|1073182_1074421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35450.1|1075498_1076626_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX35451.1|1076636_1077464_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX35452.1|1077450_1078317_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX35453.1|1079683_1080088_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35454.1|1080179_1081130_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX38045.1|1081499_1082411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35455.1|1082425_1083136_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35456.1|1083132_1084377_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX35457.1|1084378_1084813_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX35458.1|1084841_1085147_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX35459.1|1085040_1085259_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35460.1|1085245_1086196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35461.1|1086252_1087401_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX35462.1|1087481_1088432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35463.1|1088963_1089761_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35464.1|1089808_1090462_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX35465.1|1090418_1091507_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX35466.1|1091671_1093897_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX35467.1|1096174_1097071_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX35468.1|1096959_1097205_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35469.1|1097191_1098142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1128528	1198449	4106328	transposase,protease	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
AZX35498.1|1128528_1129479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35499.1|1129535_1130648_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX35500.1|1133031_1133982_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35501.1|1134572_1135349_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX35502.1|1135466_1135730_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX35503.1|1135830_1136835_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX35504.1|1137035_1138637_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX35505.1|1138662_1139421_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX35506.1|1139512_1140169_-	adenylate kinase	NA	NA	NA	NA	NA
AZX35507.1|1140259_1141024_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX35508.1|1141033_1141222_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35509.1|1141277_1142321_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX35510.1|1142317_1142731_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX35511.1|1142727_1143348_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX35512.1|1143628_1144579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35513.1|1144746_1146138_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX35514.1|1146210_1146789_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX35515.1|1146905_1148303_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX35516.1|1148418_1149624_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX35517.1|1149723_1150242_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX35518.1|1150336_1150582_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX35519.1|1150809_1151124_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX35520.1|1151213_1156403_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX38047.1|1156399_1158568_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX35521.1|1158587_1160939_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX35522.1|1160943_1162263_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX35523.1|1162281_1163955_+	MCE family protein	NA	NA	NA	NA	NA
AZX35524.1|1163959_1164628_+	lipoprotein	NA	NA	NA	NA	NA
AZX35525.1|1164784_1168606_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX35526.1|1168936_1169887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35527.1|1169908_1171054_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35528.1|1171202_1172132_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX35529.1|1172128_1173217_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX35530.1|1173213_1174017_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX35531.1|1174013_1174745_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX35532.1|1174802_1176092_-	MFS transporter	NA	NA	NA	NA	NA
AZX35533.1|1176188_1176791_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35534.1|1181343_1181682_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX35535.1|1182350_1182656_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35536.1|1184362_1185313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35537.1|1185309_1186641_-	MFS transporter	NA	NA	NA	NA	NA
AZX35538.1|1187880_1189902_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX35539.1|1189894_1190536_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX35540.1|1190532_1190940_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX35541.1|1190936_1191737_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX35542.1|1191811_1192516_+	oxidoreductase	NA	NA	NA	NA	NA
AZX35543.1|1192547_1193342_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX35544.1|1193338_1194289_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35545.1|1194387_1194822_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX35546.1|1194904_1197241_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX38048.1|1197432_1198449_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1245843	1322705	4106328	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
AZX35585.1|1245843_1246794_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35586.1|1246790_1247741_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35587.1|1247727_1248078_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35588.1|1248001_1249030_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX35589.1|1249109_1250408_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX35590.1|1250404_1250986_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX35591.1|1251298_1255345_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX35592.1|1255585_1263247_+	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX35593.1|1263243_1264194_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35594.1|1265333_1265807_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35595.1|1265946_1266567_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX35596.1|1266702_1267503_+	aldolase	NA	NA	NA	NA	NA
AZX35597.1|1267557_1268649_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35598.1|1268670_1269114_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX35599.1|1269142_1269775_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX35600.1|1269885_1270302_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX35601.1|1270294_1270987_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
AZX35602.1|1271093_1271468_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35603.1|1271544_1272354_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35604.1|1272449_1273394_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AZX35605.1|1273432_1274404_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35606.1|1274494_1274932_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
AZX35607.1|1274990_1275872_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35608.1|1276875_1277736_+	amidohydrolase	NA	NA	NA	NA	NA
AZX35609.1|1277768_1279151_+	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AZX38053.1|1279147_1280167_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35610.1|1280539_1281034_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35611.1|1281041_1281782_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35612.1|1281862_1283467_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
AZX35613.1|1283506_1284316_-	HTH domain-containing protein	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
AZX35614.1|1284420_1286586_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
AZX35615.1|1287466_1288279_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX35616.1|1288291_1288600_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35617.1|1288717_1290448_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35618.1|1290449_1291595_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35619.1|1291724_1292393_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35620.1|1292514_1292982_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX35621.1|1293117_1294500_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZX35622.1|1294496_1295621_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX35623.1|1295617_1298254_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX35624.1|1298669_1299620_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35625.1|1303366_1303978_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX35626.1|1304200_1305661_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX35627.1|1305757_1307350_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX35628.1|1307336_1307615_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35629.1|1307673_1307961_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX35630.1|1307962_1309303_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX35631.1|1309398_1310088_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35632.1|1310100_1311531_+	MFS transporter	NA	NA	NA	NA	NA
AZX35633.1|1313255_1314077_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35634.1|1314087_1315659_+	amidohydrolase	NA	NA	NA	NA	NA
AZX35635.1|1315687_1316665_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35636.1|1316691_1317495_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX35637.1|1317491_1318286_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX35638.1|1318293_1319529_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX35639.1|1319521_1319956_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX35640.1|1320705_1321656_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35641.1|1321754_1322705_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1326816	1367485	4106328	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
AZX35645.1|1326816_1327767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35646.1|1327807_1328878_+	FUSC family protein	NA	NA	NA	NA	NA
AZX35647.1|1328900_1329779_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX35648.1|1329950_1330922_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX35649.1|1331084_1331927_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35650.1|1332088_1332769_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX35651.1|1332762_1333932_+	amine oxidase	NA	NA	NA	NA	NA
AZX35652.1|1333928_1334960_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX35653.1|1335003_1336245_+	MFS transporter	NA	NA	NA	NA	NA
AZX35654.1|1336279_1337812_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX35655.1|1337892_1338516_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX35656.1|1338546_1339158_+	LysE family translocator	NA	NA	NA	NA	NA
AZX35657.1|1339193_1339664_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX35658.1|1340095_1341100_+	peptidase M20	NA	NA	NA	NA	NA
AZX35659.1|1341136_1342651_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX35660.1|1342654_1343614_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX35661.1|1343642_1344446_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX35662.1|1344447_1346082_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX35663.1|1346165_1347227_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX35664.1|1347425_1347695_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35665.1|1347698_1348223_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX35666.1|1348638_1349589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35667.1|1349585_1350656_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX35668.1|1350728_1351367_+	DedA family protein	NA	NA	NA	NA	NA
AZX35669.1|1351661_1351889_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX35670.1|1352011_1352725_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX35671.1|1352969_1353920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35672.1|1354023_1354305_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35673.1|1354419_1355868_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX35674.1|1355978_1356929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35675.1|1356925_1357375_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX35676.1|1357394_1357583_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35677.1|1357569_1358520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35678.1|1358855_1359053_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX35679.1|1359068_1359428_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX35680.1|1359502_1360525_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX35681.1|1360537_1362955_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX35682.1|1362960_1363302_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX35683.1|1363360_1363771_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35684.1|1364270_1365362_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35685.1|1365545_1366142_+	lipoprotein	NA	NA	NA	NA	NA
AZX35686.1|1366241_1366424_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35687.1|1366534_1367485_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1447162	1500342	4106328	transposase,tRNA	Salmonella_phage(22.22%)	46	NA	NA
AZX35756.1|1447162_1448113_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35757.1|1448279_1448633_+	cytochrome C	NA	NA	NA	NA	NA
AZX35758.1|1448645_1449008_+	cytochrome	NA	NA	NA	NA	NA
AZX35759.1|1449049_1449475_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX35760.1|1449677_1450934_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX35761.1|1451132_1452113_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35762.1|1452262_1453504_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35763.1|1453602_1454553_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35764.1|1454561_1455257_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX35765.1|1458078_1458678_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX35766.1|1458688_1460854_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX35767.1|1460877_1462662_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX35768.1|1462661_1462751_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX35769.1|1463445_1463718_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX35770.1|1463717_1465784_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX35771.1|1465780_1466731_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35772.1|1466846_1467179_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX35773.1|1467175_1467862_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX35774.1|1467848_1468808_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX38061.1|1468849_1471210_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX35775.1|1471209_1471842_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX35776.1|1471904_1473284_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX35777.1|1473330_1474686_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX35778.1|1474964_1475213_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35779.1|1475400_1475718_-	virulence factor	NA	NA	NA	NA	NA
AZX35780.1|1475990_1476506_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX35781.1|1476599_1476761_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35782.1|1476776_1477532_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX35783.1|1477870_1478077_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35784.1|1478084_1478744_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX35785.1|1479038_1481243_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX35786.1|1481353_1482577_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX35787.1|1482699_1483674_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX35788.1|1483741_1484935_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX35789.1|1484949_1485750_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX35790.1|1485746_1487603_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX35791.1|1487599_1488205_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX35792.1|1488223_1489609_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX35793.1|1490334_1491561_+	transporter	NA	NA	NA	NA	NA
AZX35794.1|1491649_1492432_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX35795.1|1492530_1493481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35796.1|1493507_1494281_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX35797.1|1494292_1495534_+	MFS transporter	NA	NA	NA	NA	NA
AZX35798.1|1497315_1498266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35799.1|1498297_1499395_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX35800.1|1499391_1500342_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1542191	1601053	4106328	transposase,protease,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZX38062.1|1542191_1542680_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX35846.1|1542797_1543376_+|protease	protease	protease	NA	NA	NA	NA
AZX35847.1|1543448_1543850_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX35848.1|1543948_1544899_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35849.1|1544905_1546018_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX35850.1|1546704_1547907_+	MFS transporter	NA	NA	NA	NA	NA
AZX35851.1|1548110_1550771_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35852.1|1550783_1554188_+	nuclease	NA	NA	NA	NA	NA
AZX35853.1|1554855_1557081_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX35854.1|1557127_1557454_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX35855.1|1557504_1558113_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX35856.1|1558211_1559162_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35857.1|1559231_1559996_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX35858.1|1559992_1560592_-	hypothetical protein	NA	NA	NA	NA	NA
AZX38063.1|1560695_1561541_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX35859.1|1561606_1562233_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX35860.1|1562229_1563180_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35861.1|1563166_1563355_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35862.1|1563278_1564400_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX35863.1|1564380_1565382_-	aminopeptidase	NA	NA	NA	NA	NA
AZX35864.1|1565487_1566999_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX35865.1|1566995_1568300_-	peptidase	NA	NA	NA	NA	NA
AZX35866.1|1568411_1568972_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX35867.1|1569239_1569794_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX35868.1|1570249_1570465_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX38064.1|1570719_1573317_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX35869.1|1573313_1574501_+	cupin	NA	NA	NA	NA	NA
AZX35870.1|1575158_1575773_+	fimbrial protein	NA	NA	NA	NA	NA
AZX35871.1|1575861_1576989_-	lipoprotein	NA	NA	NA	NA	NA
AZX35872.1|1577000_1577906_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX35873.1|1578798_1579749_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35874.1|1579930_1580683_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX35875.1|1580751_1581411_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX35876.1|1581407_1582136_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX35877.1|1582148_1584428_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX35878.1|1584452_1584656_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX35879.1|1584697_1585345_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX35880.1|1585465_1586383_-	cytochrome C	NA	NA	NA	NA	NA
AZX35881.1|1586379_1587093_-	cytochrome C	NA	NA	NA	NA	NA
AZX35882.1|1587330_1588101_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX35883.1|1588105_1588705_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX35884.1|1588949_1590440_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX35885.1|1590498_1590783_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX35886.1|1590779_1590908_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35887.1|1590920_1591076_-	hypothetical protein	NA	NA	NA	NA	NA
AZX35888.1|1591348_1592275_-	YicC family protein	NA	NA	NA	NA	NA
AZX35889.1|1592411_1593152_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX35890.1|1593318_1594695_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX35891.1|1594876_1595782_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX35892.1|1595816_1597556_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX35893.1|1597433_1599236_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX35894.1|1599353_1600004_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX35895.1|1600102_1601053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1646225	1701765	4106328	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX35926.1|1646225_1647176_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35927.1|1647234_1648008_+	oxidoreductase	NA	NA	NA	NA	NA
AZX35928.1|1648000_1649557_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX35929.1|1649553_1650504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35930.1|1651830_1652433_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35931.1|1652672_1653374_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX35932.1|1653367_1654150_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX35933.1|1654334_1655285_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35934.1|1655383_1656121_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX35935.1|1656310_1657069_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX35936.1|1657115_1658105_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35937.1|1658282_1659251_-	transporter	NA	NA	NA	NA	NA
AZX35938.1|1660790_1661759_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX35939.1|1661767_1662709_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX35940.1|1663182_1664193_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38068.1|1664183_1665698_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX35941.1|1665694_1667041_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38069.1|1667043_1668078_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX35942.1|1668127_1669753_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX35943.1|1670305_1671256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX35944.1|1671360_1672308_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38070.1|1672361_1674176_-	histidine kinase	NA	NA	NA	NA	NA
AZX35945.1|1674168_1674843_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX35946.1|1674972_1677996_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX35947.1|1678009_1678309_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX38071.1|1678623_1679247_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX35948.1|1679490_1680360_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX35949.1|1680337_1681282_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX38072.1|1681367_1682339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX38073.1|1682406_1683180_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX35950.1|1683176_1684373_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX35951.1|1684403_1685354_-	hydrolase	NA	NA	NA	NA	NA
AZX35952.1|1685575_1686265_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX35953.1|1686329_1687085_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX35954.1|1687136_1688129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35955.1|1688138_1689092_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX38074.1|1689207_1690170_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35956.1|1691571_1692000_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35957.1|1691996_1692947_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX38075.1|1693240_1693963_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX35958.1|1694401_1695589_-	MFS transporter	NA	NA	NA	NA	NA
AZX35959.1|1695592_1695973_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35960.1|1697692_1698664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX35961.1|1698677_1699391_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX35962.1|1699395_1700313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX35963.1|1700419_1700716_+	hypothetical protein	NA	NA	NA	NA	NA
AZX35964.1|1700814_1701765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	1934529	2004181	4106328	transposase,tRNA	Staphylococcus_phage(16.67%)	57	NA	NA
AZX36139.1|1934529_1937187_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX36140.1|1937264_1938467_-	MFS transporter	NA	NA	NA	NA	NA
AZX36141.1|1938463_1938976_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX38084.1|1939098_1939437_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX36142.1|1939812_1940763_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36143.1|1940861_1941812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36144.1|1941975_1943871_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX36145.1|1943984_1944152_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX36146.1|1944215_1944452_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX36147.1|1944820_1946020_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX36148.1|1947535_1948486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36149.1|1948937_1949939_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36150.1|1950111_1950969_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX36151.1|1950965_1952228_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX36152.1|1952328_1952703_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX36153.1|1952751_1953963_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX36154.1|1954047_1954818_+	spermidine synthase	NA	NA	NA	NA	NA
AZX36155.1|1954931_1955696_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX38085.1|1955811_1956948_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX36156.1|1956944_1957751_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX36157.1|1959495_1960467_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX36158.1|1960623_1961136_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX36159.1|1961294_1962269_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36160.1|1963269_1964064_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX38086.1|1964089_1964896_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX36161.1|1965006_1965597_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX36162.1|1965607_1966786_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36163.1|1966888_1967263_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX36164.1|1967515_1968847_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX36165.1|1968913_1972144_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX36166.1|1973634_1974381_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX36167.1|1974465_1974927_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX36168.1|1974964_1976023_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX36169.1|1975985_1977815_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX36170.1|1977854_1978427_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX36171.1|1979851_1980763_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX36172.1|1980991_1982314_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX36173.1|1982359_1982743_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36174.1|1982673_1983309_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36175.1|1983268_1984219_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36176.1|1985089_1985962_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX36177.1|1986039_1987179_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36178.1|1987528_1988794_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX36179.1|1988799_1989327_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX36180.1|1989331_1990150_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX36181.1|1990149_1990872_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX36182.1|1990893_1991208_+	ferredoxin	NA	NA	NA	NA	NA
AZX36183.1|1991204_1992374_+	CoA transferase	NA	NA	NA	NA	NA
AZX36184.1|1992404_1993280_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX36185.1|1993276_1994596_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX36186.1|1994668_1995865_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX36187.1|1995875_1997363_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36188.1|1999957_2000857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36189.1|2000994_2001960_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX36190.1|2002058_2003009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36191.1|2003052_2003244_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36192.1|2003230_2004181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2015677	2066122	4106328	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
AZX36204.1|2015677_2016628_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36205.1|2017765_2018062_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36206.1|2018236_2019589_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX38088.1|2019731_2020748_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX38089.1|2022727_2023741_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX36207.1|2023827_2024733_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36208.1|2024889_2025234_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36209.1|2025391_2025850_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX36210.1|2025863_2028080_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX36211.1|2028076_2029138_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36212.1|2029166_2030141_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX36213.1|2030092_2030911_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX36214.1|2030923_2031532_-	peptidase S16	NA	NA	NA	NA	NA
AZX36215.1|2031706_2032102_+	VOC family protein	NA	NA	NA	NA	NA
AZX36216.1|2032120_2033560_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX36217.1|2033588_2033936_+	GFA family protein	NA	NA	NA	NA	NA
AZX36218.1|2033954_2034905_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36219.1|2035557_2036508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36220.1|2036606_2037557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36221.1|2037640_2039458_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX36222.1|2039531_2040179_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36223.1|2040191_2041121_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX36224.1|2041290_2041755_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36225.1|2042002_2042683_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36226.1|2042731_2044423_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX36227.1|2044438_2044990_-	ATPase	NA	NA	NA	NA	NA
AZX36228.1|2044986_2045358_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX36229.1|2045470_2046307_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX36230.1|2046317_2046842_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX36231.1|2046939_2047119_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX36232.1|2047248_2048280_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX36233.1|2048353_2048710_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX38090.1|2048699_2049575_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX36234.1|2049673_2050558_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36235.1|2050579_2051875_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX36236.1|2052823_2053474_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX38091.1|2053561_2055082_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX36237.1|2055339_2057205_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX36238.1|2058250_2059201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36239.1|2060173_2060533_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX36240.1|2060520_2061957_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX36241.1|2061953_2062607_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX36242.1|2062603_2063803_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX36243.1|2063900_2065175_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX36244.1|2065171_2066122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2077326	2118017	4106328	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
AZX36258.1|2077326_2078277_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36259.1|2078375_2079326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36260.1|2079285_2079699_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX36261.1|2079983_2080283_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38093.1|2080692_2082861_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX36262.1|2083660_2085691_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX36263.1|2085710_2085923_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX36264.1|2086200_2086740_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX36265.1|2086853_2088161_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX36266.1|2088225_2089383_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX36267.1|2089566_2090466_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX36268.1|2090484_2091789_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX36269.1|2091754_2092861_-	GTPase HflX	NA	NA	NA	NA	NA
AZX36270.1|2092948_2093185_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX36271.1|2093323_2094394_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX36272.1|2094397_2095753_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX36273.1|2095779_2096940_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX36274.1|2096942_2097581_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36275.1|2097582_2098887_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX36276.1|2098927_2100223_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX36277.1|2100229_2100736_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX36278.1|2100732_2101881_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX36279.1|2101908_2102334_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX36280.1|2102656_2105539_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX36281.1|2105631_2106387_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX36282.1|2107152_2108502_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX36283.1|2108600_2109551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36284.1|2109649_2110600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36285.1|2110673_2111147_+	RidA family protein	NA	NA	NA	NA	NA
AZX36286.1|2111172_2112381_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX36287.1|2112377_2113151_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX36288.1|2113150_2113774_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX36289.1|2113939_2114200_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX36290.1|2114503_2115085_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36291.1|2115151_2115406_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX36292.1|2115392_2118017_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2145800	2207005	4106328	transposase,protease,tRNA	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX36312.1|2145800_2146751_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36313.1|2146951_2147761_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX36314.1|2147885_2148836_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36315.1|2148832_2149726_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX36316.1|2149850_2150045_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX36317.1|2150044_2150386_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX36318.1|2150395_2152258_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX36319.1|2152387_2152900_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX36320.1|2152902_2153226_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX36321.1|2153227_2153638_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX36322.1|2153675_2154887_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX36323.1|2154904_2155417_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX36324.1|2155632_2156124_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX36325.1|2156376_2158413_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX36326.1|2158490_2159693_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX36327.1|2159743_2160472_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX36328.1|2162029_2162980_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36329.1|2163550_2163763_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36330.1|2163780_2164512_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36331.1|2164546_2165188_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX36332.1|2165180_2165897_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX36333.1|2168061_2168838_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX36334.1|2168859_2170017_-	thiolase	NA	NA	NA	NA	NA
AZX36335.1|2170013_2170445_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36336.1|2170441_2171245_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX36337.1|2171258_2171714_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX36338.1|2171726_2172698_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX36339.1|2172763_2173987_-	CoA transferase	NA	NA	NA	NA	NA
AZX36340.1|2174214_2175165_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36341.1|2175288_2177742_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX36342.1|2177930_2179235_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX36343.1|2179339_2179993_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX36344.1|2179995_2181306_-	trigger factor	NA	NA	NA	NA	NA
AZX36345.1|2181484_2182063_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX36346.1|2182174_2182375_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX36347.1|2182720_2183287_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX36348.1|2183370_2183574_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX36349.1|2183880_2184201_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36350.1|2184242_2184524_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36351.1|2184598_2185855_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX36352.1|2186237_2186567_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX36353.1|2188137_2188959_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX36354.1|2188958_2190098_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX36355.1|2190104_2191001_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX36356.1|2190997_2192923_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX36357.1|2193282_2195895_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX36358.1|2195947_2198248_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX36359.1|2198244_2199453_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX36360.1|2199714_2200089_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36361.1|2200085_2201036_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36362.1|2201134_2203129_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX36363.1|2203188_2204154_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX36364.1|2204143_2207005_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
>prophage 19
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2210398	2258413	4106328	transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	44	NA	NA
AZX36369.1|2210398_2211349_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36370.1|2211335_2211515_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36371.1|2211459_2211900_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX36372.1|2212028_2213258_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX36373.1|2213296_2214118_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX36374.1|2214171_2215323_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX36375.1|2215414_2215903_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX36376.1|2218429_2221003_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX36377.1|2221073_2223647_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX36378.1|2223912_2224113_+	CsbD family protein	NA	NA	NA	NA	NA
AZX36379.1|2224144_2224306_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX36380.1|2224363_2224702_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX36381.1|2224850_2225801_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36382.1|2225899_2226850_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36383.1|2226948_2227668_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX38095.1|2227744_2228293_+	arylesterase	NA	NA	NA	NA	NA
AZX36384.1|2228274_2230290_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX36385.1|2230472_2231222_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX36386.1|2231234_2232098_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX36387.1|2232101_2233517_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX36388.1|2233650_2234379_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX36389.1|2234517_2234718_-	copper chaperone	NA	NA	NA	NA	NA
AZX36390.1|2234893_2235292_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX36391.1|2235315_2236716_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX38096.1|2236834_2237587_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36392.1|2237875_2238553_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36393.1|2238579_2239359_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX36394.1|2239355_2240240_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX38097.1|2240257_2240947_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX36395.1|2241021_2241780_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX36396.1|2241905_2242553_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX38098.1|2242820_2243837_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX36397.1|2243934_2244975_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX36398.1|2245109_2246402_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX36399.1|2247761_2248145_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX36400.1|2248162_2248750_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX36401.1|2248787_2249738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36402.1|2249836_2250397_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX36403.1|2250393_2250939_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36404.1|2251134_2252163_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36405.1|2252203_2253544_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX36406.1|2253652_2254657_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36407.1|2254763_2257364_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX36408.1|2257462_2258413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2504995	2563239	4106328	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZX36613.1|2504995_2505946_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36614.1|2506425_2507082_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX36615.1|2507096_2508764_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX36616.1|2508766_2509396_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36617.1|2509607_2510702_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36618.1|2510846_2511659_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX36619.1|2511662_2513366_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX36620.1|2513416_2514547_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX36621.1|2514733_2515810_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX38110.1|2515891_2516542_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX36622.1|2516556_2517990_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX36623.1|2518243_2519062_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36624.1|2519058_2519763_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX36625.1|2520662_2521778_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36626.1|2521811_2522186_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36627.1|2522208_2523366_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX36628.1|2523378_2523612_-	lipoprotein	NA	NA	NA	NA	NA
AZX36629.1|2524246_2527216_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX36630.1|2527230_2527440_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX36631.1|2527591_2528221_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36632.1|2528217_2530335_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX36633.1|2530331_2531012_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX36634.1|2531008_2531569_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX36635.1|2531575_2532673_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX36636.1|2532810_2533419_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX36637.1|2533415_2534708_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX36638.1|2534721_2535264_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX36639.1|2535273_2536110_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX36640.1|2536143_2537205_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX36641.1|2537246_2538299_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX36642.1|2538314_2538617_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36643.1|2538758_2539709_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36644.1|2539887_2541582_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX36645.1|2541578_2542664_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX36646.1|2542711_2543611_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36647.1|2543621_2544266_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX36648.1|2545287_2548530_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX36649.1|2548540_2549638_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX36650.1|2549900_2550884_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX36651.1|2550982_2551933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36652.1|2552031_2552982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36653.1|2552991_2553681_-	VIT family protein	NA	NA	NA	NA	NA
AZX36654.1|2553740_2554178_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX36655.1|2554223_2555117_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX36656.1|2555164_2556337_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX36657.1|2556333_2557488_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX36658.1|2557684_2558035_-	RnfH family protein	NA	NA	NA	NA	NA
AZX36659.1|2558024_2558459_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX36660.1|2558475_2559426_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36661.1|2559573_2560041_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX36662.1|2560021_2561179_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX36663.1|2561244_2562171_-	paraslipin	NA	NA	NA	NA	NA
AZX36664.1|2562288_2563239_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2605519	2672019	4106328	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX36703.1|2605519_2606470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36704.1|2606839_2607412_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX36705.1|2607414_2608425_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX36706.1|2608417_2608918_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX36707.1|2608928_2609270_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX36708.1|2609281_2610073_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX36709.1|2610089_2610359_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX36710.1|2610381_2611170_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX38114.1|2611216_2612233_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX36711.1|2612449_2613892_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX36712.1|2614070_2615690_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX36713.1|2615810_2617631_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX36714.1|2617709_2619242_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX36715.1|2619275_2620922_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX36716.1|2620991_2622014_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX36717.1|2622031_2623165_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX36718.1|2623167_2623857_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX36719.1|2623856_2624642_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX36720.1|2624685_2625450_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX36721.1|2625488_2626910_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX36722.1|2626975_2627680_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX36723.1|2627727_2628147_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX36724.1|2628159_2628567_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX38115.1|2628750_2629461_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX36725.1|2629587_2629878_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX36726.1|2629895_2630378_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX36727.1|2634883_2636038_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX38116.1|2636343_2637360_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX36728.1|2637606_2638395_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36729.1|2638461_2639142_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX36730.1|2639138_2639909_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX36731.1|2640007_2640958_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36732.1|2641013_2641931_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX36733.1|2641941_2643120_-	mandelate racemase	NA	NA	NA	NA	NA
AZX36734.1|2643139_2644135_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX36735.1|2645723_2646332_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX36736.1|2646319_2647360_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX36737.1|2647377_2648340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX36738.1|2648336_2649530_-	CoA transferase	NA	NA	NA	NA	NA
AZX36739.1|2649526_2650324_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX36740.1|2650349_2651336_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX36741.1|2651354_2653394_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX38117.1|2653595_2654276_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36742.1|2654289_2655201_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX36743.1|2655197_2655776_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX36744.1|2655914_2656820_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36745.1|2656827_2660247_+	nuclease	NA	NA	NA	NA	NA
AZX36746.1|2660234_2662835_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX36747.1|2663790_2664423_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36748.1|2664816_2665575_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36749.1|2665571_2666774_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX36750.1|2666961_2667912_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36751.1|2668819_2669965_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX38118.1|2669984_2670707_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX36752.1|2670823_2671003_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36753.1|2671068_2672019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2876131	2957393	4106328	transposase,tRNA	Planktothrix_phage(16.67%)	58	NA	NA
AZX36918.1|2876131_2877082_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36919.1|2877078_2877981_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36920.1|2878068_2878827_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX36921.1|2878839_2879988_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX36922.1|2880028_2881456_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX36923.1|2881685_2882900_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX36924.1|2882945_2885816_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX36925.1|2888226_2888715_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX36926.1|2888840_2891537_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX36927.1|2891691_2893974_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX36928.1|2894139_2894772_+	fimbrial protein	NA	NA	NA	NA	NA
AZX36929.1|2894870_2895821_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX36930.1|2895867_2896422_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX36931.1|2896489_2897335_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX36932.1|2897404_2898373_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX36933.1|2898372_2900169_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36934.1|2902068_2905995_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX36935.1|2906285_2906462_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36936.1|2910226_2911054_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX36937.1|2911087_2911783_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX36938.1|2911775_2913056_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX36939.1|2913065_2914043_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38133.1|2914024_2915725_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX36940.1|2915827_2916931_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX36941.1|2916961_2917717_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX36942.1|2917723_2919244_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX36943.1|2919286_2919589_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36944.1|2919585_2920218_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX36945.1|2920296_2922162_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX36946.1|2922158_2922974_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX36947.1|2922981_2924097_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX36948.1|2925001_2925880_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX36949.1|2925879_2926704_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX36950.1|2926871_2927822_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36951.1|2928004_2930884_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX36952.1|2930865_2931642_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX36953.1|2931734_2933198_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX36954.1|2933194_2933566_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX36955.1|2933583_2934897_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36956.1|2934933_2935392_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX36957.1|2935504_2936455_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36958.1|2936451_2937465_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX36959.1|2937604_2938591_+	homoserine kinase	NA	NA	NA	NA	NA
AZX36960.1|2938634_2939435_+	hypothetical protein	NA	NA	NA	NA	NA
AZX36961.1|2940237_2941188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX36962.1|2941339_2941942_-	hypothetical protein	NA	NA	NA	NA	NA
AZX36963.1|2941960_2942593_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX36964.1|2942830_2944717_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX36965.1|2944735_2945578_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX36966.1|2945574_2946933_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX36967.1|2947153_2947948_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX36968.1|2948178_2949672_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX36969.1|2949907_2951989_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX36970.1|2952183_2953224_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX36971.1|2953358_2954375_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX36972.1|2954396_2955254_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX38134.1|2955298_2956075_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX36973.1|2956442_2957393_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	2966461	3016448	4106328	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZX36981.1|2966461_2966875_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX36982.1|2966915_2967233_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX36983.1|2967317_2968034_-	hypothetical protein	NA	NA	NA	NA	NA
AZX38135.1|2968297_2969719_+	siroheme synthase	NA	NA	NA	NA	NA
AZX36984.1|2971023_2971974_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX38136.1|2973914_2974931_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX38137.1|2975266_2975908_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX36985.1|2975998_2977435_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX36986.1|2977592_2978666_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX36987.1|2978662_2979799_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX36988.1|2979943_2980288_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX36989.1|2980354_2982235_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX36990.1|2982284_2983220_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX38138.1|2983552_2984569_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX36991.1|2985506_2986934_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX36992.1|2986930_2987953_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX36993.1|2987942_2988416_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX36994.1|2988541_2989444_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZX36995.1|2989440_2991084_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX38139.1|2991080_2992088_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX38140.1|2992918_2993935_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX36996.1|2994034_2994667_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX36997.1|2994675_2995065_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX36998.1|2995117_2996170_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX36999.1|2997033_2998740_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX37000.1|2998813_2999314_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX37001.1|2999328_3001386_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX37002.1|3001412_3001706_-	response regulator	NA	NA	NA	NA	NA
AZX37003.1|3001807_3002755_-	motility protein MotB	NA	NA	NA	NA	NA
AZX37004.1|3002767_3003643_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX37005.1|3003763_3004324_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX37006.1|3004358_3004682_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX37007.1|3005117_3005855_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX37008.1|3006153_3007104_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37009.1|3007347_3007611_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX37010.1|3007684_3007966_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37011.1|3007982_3008843_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX37012.1|3008839_3009175_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37013.1|3009228_3009879_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX37014.1|3011559_3012504_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37015.1|3012549_3012867_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37016.1|3012869_3013808_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX37017.1|3013985_3014471_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX37018.1|3014489_3015038_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX37019.1|3015314_3016448_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	3028055	3100549	4106328	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZX37028.1|3028055_3029006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37029.1|3029048_3030224_+	flagellin FliC	NA	NA	NA	NA	NA
AZX37030.1|3030445_3032236_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX37031.1|3032248_3033910_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX37032.1|3033922_3036628_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX37033.1|3036920_3038675_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX37034.1|3038671_3039298_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX37035.1|3039294_3040146_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX37036.1|3040221_3042336_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX37037.1|3042486_3043137_+	SCO family protein	NA	NA	NA	NA	NA
AZX37038.1|3043282_3043534_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX37039.1|3043603_3044986_-	multidrug transporter	NA	NA	NA	NA	NA
AZX37040.1|3044982_3048162_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX38142.1|3048969_3049887_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37041.1|3049938_3050670_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX37042.1|3050729_3051302_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX38143.1|3052810_3053827_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX37043.1|3053964_3055014_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX37044.1|3055118_3056069_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37045.1|3056164_3056890_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX37046.1|3057100_3057481_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX37047.1|3057786_3058659_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX37048.1|3058666_3059047_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37049.1|3059200_3060475_-	radical SAM protein	NA	NA	NA	NA	NA
AZX38144.1|3061962_3062871_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX37050.1|3063668_3064733_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX37051.1|3066569_3067604_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX37052.1|3067793_3068435_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX37053.1|3068517_3070344_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX37054.1|3070587_3071517_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX37055.1|3071516_3072266_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX37056.1|3072337_3073252_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX37057.1|3073271_3074417_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX37058.1|3074477_3075389_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX37059.1|3075469_3076420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37060.1|3076518_3077103_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX37061.1|3077137_3078127_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX37062.1|3078123_3079065_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX37063.1|3079061_3080282_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX37064.1|3080324_3080639_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX37065.1|3080830_3081190_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX37066.1|3081191_3082922_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX37067.1|3083094_3083766_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX37068.1|3083780_3085109_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX37069.1|3085105_3086005_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX37070.1|3086091_3087177_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX37071.1|3087169_3088303_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX37072.1|3088302_3090984_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX37073.1|3091354_3091936_+	OmpA family protein	NA	NA	NA	NA	NA
AZX37074.1|3092013_3092787_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX37075.1|3092783_3093461_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX37076.1|3093676_3094858_+	MFS transporter	NA	NA	NA	NA	NA
AZX37077.1|3095334_3095592_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37078.1|3095630_3095813_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX37079.1|3095842_3096793_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX38145.1|3096922_3097315_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX37080.1|3097591_3098503_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX37081.1|3098627_3099602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX37082.1|3099598_3100549_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	3114056	3167574	4106328	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZX37093.1|3114056_3115007_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37094.1|3115119_3115371_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37095.1|3115564_3115780_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37096.1|3115876_3116995_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX37097.1|3117114_3117327_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37098.1|3117486_3117708_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37099.1|3117760_3118711_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37100.1|3119887_3121258_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX37101.1|3121290_3122082_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37102.1|3122094_3123150_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37103.1|3123175_3124051_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37104.1|3124156_3124405_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37105.1|3124439_3125894_-	carboxylase	NA	NA	NA	NA	NA
AZX37106.1|3125890_3126412_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX37107.1|3126440_3127793_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX37108.1|3128016_3130905_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX37109.1|3133049_3134351_+	phospholipase	NA	NA	NA	NA	NA
AZX37110.1|3134365_3135082_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX37111.1|3135363_3136044_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX37112.1|3136055_3136223_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37113.1|3136331_3136484_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37114.1|3136571_3137231_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX37115.1|3137611_3139462_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX37116.1|3139458_3140409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37117.1|3141572_3143288_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX37118.1|3143298_3143790_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX37119.1|3143862_3144879_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX37120.1|3145046_3145826_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX37121.1|3145844_3146372_-	lipoprotein	NA	NA	NA	NA	NA
AZX37122.1|3146370_3146577_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37123.1|3146665_3146935_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX37124.1|3147025_3149185_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX37125.1|3149305_3150025_+	lipoprotein	NA	NA	NA	NA	NA
AZX37126.1|3150021_3150972_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37127.1|3151112_3152330_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX37128.1|3152323_3152935_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX37129.1|3153568_3154546_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX37130.1|3154689_3155436_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX37131.1|3155457_3155904_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX37132.1|3156691_3158923_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX37133.1|3158945_3159746_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37134.1|3160027_3161260_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX37135.1|3161370_3162360_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX37136.1|3162390_3163779_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX37137.1|3165377_3166361_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX38147.1|3166557_3167574_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	3232032	3305194	4106328	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZX37191.1|3232032_3232983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37192.1|3232979_3233999_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX37193.1|3234008_3236717_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX37194.1|3236864_3237521_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX37195.1|3237619_3238570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37196.1|3238675_3239611_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX37197.1|3239810_3241505_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX37198.1|3241539_3242466_+	VOC family protein	NA	NA	NA	NA	NA
AZX38150.1|3242534_3243632_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37199.1|3243650_3244514_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX37200.1|3244525_3245308_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX37201.1|3245304_3246423_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX37202.1|3246419_3247952_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX37203.1|3247992_3249000_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX37204.1|3249144_3249867_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37205.1|3249882_3250905_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX37206.1|3251221_3251956_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37207.1|3252040_3253786_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX37208.1|3253782_3254535_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX37209.1|3254579_3255536_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX37210.1|3255624_3256191_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37211.1|3256198_3257059_-	aminotransferase	NA	NA	NA	NA	NA
AZX37212.1|3257088_3257832_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX37213.1|3257848_3258532_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX37214.1|3259369_3260284_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX37215.1|3260348_3261257_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37216.1|3261347_3262772_-	protein CyaE	NA	NA	NA	NA	NA
AZX37217.1|3262773_3264096_-	protein CyaD	NA	NA	NA	NA	NA
AZX37218.1|3264092_3266231_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX37219.1|3266308_3271429_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX38151.1|3271615_3271795_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37220.1|3271877_3272465_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX37221.1|3272480_3273962_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX37222.1|3274016_3275870_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37223.1|3276132_3277470_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX37224.1|3277504_3279502_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX37225.1|3279519_3281568_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX37226.1|3281698_3282565_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37227.1|3282833_3283799_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX37228.1|3283913_3285062_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX37229.1|3285486_3285798_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX37230.1|3285831_3286092_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX37231.1|3286241_3287375_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX37232.1|3287445_3288582_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX37233.1|3288747_3289542_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX37234.1|3289604_3290048_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX37235.1|3290163_3291114_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37236.1|3291100_3291289_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37237.1|3291236_3291644_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX37238.1|3291716_3293912_+	DNA methylase	NA	NA	NA	NA	NA
AZX37239.1|3294133_3295084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37240.1|3295043_3295568_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX37241.1|3295699_3296671_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38152.1|3296790_3299235_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX37242.1|3299250_3299841_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX37243.1|3300084_3301035_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37244.1|3301192_3302458_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX37245.1|3302491_3303589_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX37246.1|3304243_3305194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	3316481	3416594	4106328	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX37257.1|3316481_3317432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37258.1|3318163_3318541_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX37259.1|3318525_3319227_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37260.1|3319370_3320063_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX37261.1|3320062_3321166_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX37262.1|3321275_3323648_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX37263.1|3323644_3325204_+	chaperone SurA	NA	NA	NA	NA	NA
AZX37264.1|3325228_3326026_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX37265.1|3326057_3327203_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX37266.1|3327307_3328750_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX38153.1|3328752_3329841_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37267.1|3332119_3333070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37268.1|3333056_3333275_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37269.1|3334199_3334757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX37270.1|3334732_3335083_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37271.1|3335251_3336046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX37272.1|3336042_3337092_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX37273.1|3337091_3337781_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX37274.1|3337867_3338365_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX37275.1|3338396_3339713_-	protein TolB	NA	NA	NA	NA	NA
AZX37276.1|3339729_3340704_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX37277.1|3340740_3341199_-	protein TolR	NA	NA	NA	NA	NA
AZX37278.1|3341198_3341879_-	protein TolQ	NA	NA	NA	NA	NA
AZX37279.1|3341881_3342310_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX37280.1|3342362_3344093_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX37281.1|3344158_3344731_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX37282.1|3344711_3345398_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX37283.1|3345753_3346425_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX37284.1|3346431_3346632_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37285.1|3346974_3347256_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37286.1|3347252_3347786_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX37287.1|3347767_3348319_-	lysozyme	NA	NA	NA	NA	NA
AZX37288.1|3348297_3348540_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37289.1|3348544_3349357_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37290.1|3349356_3349620_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37291.1|3349838_3350255_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37292.1|3350259_3354216_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX37293.1|3354208_3354598_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX37294.1|3354594_3355128_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX37295.1|3355195_3355555_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37296.1|3355564_3358177_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX37297.1|3358202_3358493_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX37298.1|3358510_3358840_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX37299.1|3358849_3359368_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX37300.1|3359622_3360123_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX37301.1|3360130_3360553_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37302.1|3360549_3360948_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX37303.1|3360944_3361340_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX37304.1|3361339_3361540_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37305.1|3361541_3362024_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX37306.1|3362086_3362338_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37307.1|3362347_3362995_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX37308.1|3363012_3363963_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37309.1|3364391_3364994_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX37310.1|3365116_3365359_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX38154.1|3365364_3366420_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX37311.1|3366448_3367867_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX37312.1|3367869_3369147_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX37313.1|3369133_3369583_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX37314.1|3370258_3371209_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37315.1|3371226_3371448_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37316.1|3371462_3372161_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37317.1|3372153_3372474_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38155.1|3372953_3373565_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX37318.1|3373630_3373843_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37319.1|3374094_3375045_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37320.1|3375143_3376217_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37321.1|3376384_3377179_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX37322.1|3377218_3377743_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX37323.1|3377735_3379478_-	sulfite reductase	NA	NA	NA	NA	NA
AZX37324.1|3379687_3380446_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX37325.1|3380448_3381156_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX37326.1|3381172_3382054_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX37327.1|3382064_3382823_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX38156.1|3382791_3383547_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37328.1|3383616_3385035_+	amidase	NA	NA	NA	NA	NA
AZX37329.1|3385056_3385707_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX37330.1|3385840_3386176_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX37331.1|3386264_3387215_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37332.1|3387291_3389112_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX37333.1|3389116_3390190_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX37334.1|3390312_3391281_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX37335.1|3391354_3392266_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX37336.1|3392284_3392857_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX37337.1|3392937_3393486_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX37338.1|3393485_3395075_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX37339.1|3395144_3395384_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX37340.1|3395424_3396456_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX37341.1|3396515_3397697_-	monooxygenase	NA	NA	NA	NA	NA
AZX37342.1|3397793_3398246_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37343.1|3398255_3399596_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX37344.1|3399912_3400950_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37345.1|3401331_3401691_+	hypothetical protein	NA	NA	NA	NA	NA
AZX38157.1|3401774_3402716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37346.1|3402790_3403741_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37347.1|3404034_3405129_+	porin	NA	NA	NA	NA	NA
AZX37348.1|3405210_3406092_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX37349.1|3406113_3406953_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX37350.1|3407028_3408546_+	peptidase	NA	NA	NA	NA	NA
AZX37351.1|3408642_3409743_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX37352.1|3409759_3410182_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX37353.1|3410204_3410417_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX37354.1|3410463_3411384_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX38158.1|3411647_3412316_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX37355.1|3412318_3412648_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX37356.1|3412854_3414288_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX37357.1|3414299_3414683_-	thioredoxin	NA	NA	NA	NA	NA
AZX37358.1|3414744_3415545_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37359.1|3415643_3416594_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025362	Bordetella pertussis strain H778 chromosome, complete genome	4106328	4005396	4070308	4106328	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX37888.1|4005396_4005882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37889.1|4006100_4007081_+	protein BugT	NA	NA	NA	NA	NA
AZX37890.1|4007347_4008157_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX37891.1|4008196_4008877_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX37892.1|4008870_4009329_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX37893.1|4009340_4009703_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX37894.1|4009785_4010469_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX37895.1|4010524_4010833_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX37896.1|4010851_4011166_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX37897.1|4011162_4013637_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX37898.1|4013644_4015036_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX37899.1|4015032_4015218_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX37900.1|4015196_4015898_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX37901.1|4015894_4016716_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX38181.1|4016696_4017821_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX37902.1|4017813_4018833_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX37903.1|4019038_4020073_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX38182.1|4020173_4020965_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX37904.1|4021047_4021422_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX37905.1|4021399_4022809_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX37906.1|4022801_4024184_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX37907.1|4024518_4026123_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX37908.1|4026158_4027172_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX37909.1|4027182_4028109_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX37910.1|4028499_4029450_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37911.1|4029619_4030846_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX37912.1|4031045_4031912_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX37913.1|4031904_4032867_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX37914.1|4032967_4033918_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37915.1|4034016_4034967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37916.1|4035065_4036016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX37917.1|4036012_4037506_-	RND transporter	NA	NA	NA	NA	NA
AZX37918.1|4037502_4040610_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX37919.1|4040606_4043675_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX37920.1|4043671_4044922_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX37921.1|4045102_4045864_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX37922.1|4045896_4046547_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX37923.1|4046549_4047389_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX37924.1|4047629_4048373_+	hypothetical protein	NA	NA	NA	NA	NA
AZX37925.1|4048455_4048803_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX37926.1|4048900_4049743_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX37927.1|4049787_4050675_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX37928.1|4050701_4050890_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX37929.1|4050987_4052445_+	MFS transporter	NA	NA	NA	NA	NA
AZX37930.1|4052431_4053958_+	glycerol kinase	NA	NA	NA	NA	NA
AZX37931.1|4053976_4054444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX37932.1|4054443_4055466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX37933.1|4055586_4056327_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX37934.1|4056381_4057482_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX37935.1|4057483_4058674_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX37936.1|4058793_4059810_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX37937.1|4060128_4060800_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX37938.1|4060796_4061705_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX37939.1|4061916_4062564_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX37940.1|4066415_4067492_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX37941.1|4067502_4068312_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX37942.1|4068401_4069175_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX37943.1|4069357_4070308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
