The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	0	70443	4104278	protease,tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
AZX20230.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX20231.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX20232.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX20233.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX20234.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX20235.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX20236.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX20237.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX20238.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX20239.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX20240.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX20241.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX20242.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX20243.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX23610.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX20244.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20245.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX20246.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX20247.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20248.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX20249.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20250.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX20251.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX23611.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20252.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX20253.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX20254.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20255.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX20256.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX20257.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX20258.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX20259.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX20260.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX20261.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX20262.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX20263.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX20264.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20265.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20266.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX20267.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20268.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX20269.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX20270.1|51133_52390_+	MFS transporter	NA	NA	NA	NA	NA
AZX20271.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX20272.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX20273.1|54976_55666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX20274.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX20275.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20276.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20277.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX20278.1|60473_60893_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX20279.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20280.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20281.1|63472_64054_-|protease	protease	protease	NA	NA	NA	NA
AZX20282.1|64066_64384_-	ferredoxin	NA	NA	NA	NA	NA
AZX20283.1|64487_65546_-	oxidoreductase	NA	NA	NA	NA	NA
AZX20284.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX20285.1|67481_68663_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20286.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20287.1|70128_70443_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	77633	136107	4104278	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
AZX20293.1|77633_78584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23613.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20294.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX20295.1|82821_83526_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX20296.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX20297.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
AZX20298.1|85480_86713_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX20299.1|86730_87990_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX20300.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX20301.1|89109_90210_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX20302.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX20303.1|90792_91845_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX20304.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX20305.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX20306.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20307.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX20308.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX20309.1|96202_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX20310.1|97338_98178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX20311.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20312.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX20313.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX20314.1|101787_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX20315.1|102807_103083_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX20316.1|103090_103753_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX20317.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX20318.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX20319.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX20320.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX20321.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20322.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX20323.1|110551_111181_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX20324.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX20325.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX23614.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX20326.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23615.1|114943_115960_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX20327.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX20328.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX20329.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20330.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX20331.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX20332.1|121121_122072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20333.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AZX20334.1|123072_123906_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX23616.1|124742_125753_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX23617.1|125749_126139_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20335.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
AZX20336.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX20337.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20338.1|131149_132589_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AZX20339.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZX20340.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20341.1|135156_136107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	164893	303019	4104278	protease,transposase,tRNA	Klosneuvirus(10.53%)	118	NA	NA
AZX20364.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20365.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20366.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZX20367.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX20368.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX20369.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX20370.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23620.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZX20371.1|176366_176894_+	lipoprotein	NA	NA	NA	NA	NA
AZX20372.1|176985_177801_+	lipoprotein	NA	NA	NA	NA	NA
AZX20373.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX20374.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX20375.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20376.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX20377.1|182424_184329_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX20378.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX20379.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX20380.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AZX20381.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX23621.1|189529_189976_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX20382.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20383.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX20384.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX20385.1|194404_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20386.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX20387.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX20388.1|197377_198478_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX20389.1|198559_198934_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX20390.1|198993_201858_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX20391.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20392.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
AZX20393.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX20394.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX20395.1|207168_208218_-	cyclase	NA	NA	NA	NA	NA
AZX20396.1|208214_209039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX20397.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
AZX20398.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX20399.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX20400.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX23622.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20401.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX20402.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX20403.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX20404.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX20405.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX20406.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX20407.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX20408.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX20409.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20410.1|225388_225568_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20411.1|225620_226316_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20412.1|226332_227745_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX20413.1|227857_229288_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX20414.1|229329_231243_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZX20415.1|231561_232128_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZX20416.1|232218_233220_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZX20417.1|233334_234285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20418.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20419.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20420.1|236367_237165_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX20421.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX20422.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20423.1|240333_241377_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20424.1|241547_243650_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20425.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX20426.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX20427.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX20428.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX20429.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX20430.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX20431.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX20432.1|251621_253511_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX20433.1|253597_254236_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23623.1|254378_255623_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX20434.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX20435.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX20436.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
AZX20437.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX20438.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20439.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX20440.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
AZX20441.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX20442.1|265571_266522_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20443.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20444.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX20445.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX20446.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX20447.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX20448.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX20449.1|274098_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX20450.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX20451.1|277138_278089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20452.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20453.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX20454.1|278535_278676_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20455.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX20456.1|279653_280265_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX20457.1|280423_281278_-	cytochrome c1	NA	NA	NA	NA	NA
AZX20458.1|281297_282680_-	cytochrome b	NA	NA	NA	NA	NA
AZX20459.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX20460.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX20461.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX23624.1|284838_285975_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX20462.1|285971_286922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20463.1|287020_287647_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX20464.1|287669_288596_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX20465.1|288604_290191_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20466.1|290187_291192_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZX20467.1|291391_292252_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX20468.1|292283_293285_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX20469.1|293355_294165_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX20470.1|294242_296102_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX20471.1|296230_297433_-	MFS transporter	NA	NA	NA	NA	NA
AZX20472.1|297546_298428_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20473.1|299930_300491_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZX20474.1|300550_301501_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20475.1|301692_301953_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20476.1|302068_303019_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	466025	585344	4104278	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
AZX20616.1|466025_468401_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX20617.1|468499_469450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20618.1|470172_471447_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX20619.1|471533_472616_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX20620.1|472626_473439_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX20621.1|473475_473802_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX20622.1|473806_474367_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX20623.1|474607_475600_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX20624.1|475618_476614_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20625.1|476629_478006_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX20626.1|477998_480380_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX23639.1|480396_480786_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23640.1|480912_481143_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20627.1|481247_482198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20628.1|482296_483247_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX20629.1|483243_484116_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX20630.1|485046_486333_+	cytochrome c	NA	NA	NA	NA	NA
AZX20631.1|486386_487313_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX20632.1|487331_487796_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX20633.1|488638_489430_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX20634.1|489461_490082_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX20635.1|490078_490708_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX20636.1|490720_491329_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX20637.1|491325_492315_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX20638.1|492420_493635_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX20639.1|495586_496537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23641.1|497970_499257_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20640.1|499422_499731_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX20641.1|499731_500397_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX20642.1|500437_502228_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX20643.1|502340_503201_+	endonuclease	NA	NA	NA	NA	NA
AZX20644.1|503197_504403_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX20645.1|504399_505284_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX20646.1|506800_507235_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX20647.1|507197_508196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20648.1|508307_509453_+	transporter	NA	NA	NA	NA	NA
AZX20649.1|509527_510856_+	amidase	NA	NA	NA	NA	NA
AZX20650.1|510889_511480_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX20651.1|511769_512564_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20652.1|513733_514468_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX23642.1|514474_515302_-	copper resistance protein B	NA	NA	NA	NA	NA
AZX20653.1|515348_517124_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX20654.1|517166_517664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20655.1|517960_518911_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20656.1|519009_519960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20657.1|520300_521251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20658.1|523574_524723_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX20659.1|524767_525430_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20660.1|525543_526536_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX20661.1|526532_527270_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX20662.1|527349_528171_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX20663.1|528259_529123_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX20664.1|529249_529486_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20665.1|531460_532495_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX20666.1|532553_533531_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX20667.1|533538_534459_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX20668.1|534455_536156_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX20669.1|536158_537064_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX20670.1|537107_538241_+	peptidase	NA	NA	NA	NA	NA
AZX20671.1|538369_539320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20672.1|539418_541488_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZX20673.1|541530_543633_-	primosomal protein N'	NA	NA	NA	NA	NA
AZX20674.1|543939_545016_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZX23643.1|545091_545976_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20675.1|546158_546581_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZX20676.1|546590_547991_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZX20677.1|548033_548939_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZX20678.1|549037_550579_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZX20679.1|550613_551153_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZX20680.1|551165_551636_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZX20681.1|551773_552016_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZX20682.1|552132_553014_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZX23644.1|553086_553407_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX20683.1|554258_555209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20684.1|556532_557309_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX20685.1|557343_559116_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX20686.1|559117_560020_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX20687.1|560144_560504_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX20688.1|560535_561498_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX20689.1|561596_562547_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20690.1|562559_563495_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX20691.1|563554_564394_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX20692.1|564390_565560_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX20693.1|565556_566846_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20694.1|566888_567263_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX20695.1|567368_568106_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX20696.1|568113_568818_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX20697.1|569081_570602_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX20698.1|570657_571221_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX20699.1|571239_572271_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX20700.1|572267_573056_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX20701.1|573231_574221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20702.1|575976_576927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20703.1|578149_579052_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20704.1|579053_579908_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX20705.1|579954_581064_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX20706.1|581074_581593_-	flavin reductase	NA	NA	NA	NA	NA
AZX20707.1|581622_582255_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX20708.1|582326_582986_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX20709.1|582982_584203_-	MFS transporter	NA	NA	NA	NA	NA
AZX20710.1|584471_585344_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	589758	637693	4104278	transposase,tRNA	Pandoravirus(16.67%)	34	NA	NA
AZX20714.1|589758_590775_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX20715.1|591046_591673_-	aminotransferase	NA	NA	NA	NA	NA
AZX20716.1|591728_592856_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX20717.1|592861_598579_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX20718.1|598862_599078_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20719.1|599146_600091_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX20720.1|600279_601215_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX20721.1|601332_602904_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20722.1|602983_604192_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX20723.1|604689_605607_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX20724.1|607967_608189_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23646.1|608519_609536_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX20725.1|609620_609872_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX20726.1|609875_610691_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX20727.1|610803_611682_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX20728.1|611793_613557_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX20729.1|613672_615013_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX20730.1|616082_617507_-	ATP-binding protein	NA	NA	NA	NA	NA
AZX20731.1|617506_618208_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX20732.1|619712_620663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20733.1|620731_621730_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX20734.1|621734_622415_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX20735.1|622552_622945_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX20736.1|623052_624069_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX20737.1|624308_625094_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX20738.1|625188_626598_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX20739.1|626608_627409_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX20740.1|627429_628200_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX20741.1|628242_628710_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX20742.1|628706_629657_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20743.1|631605_632484_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX20744.1|633410_636389_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20745.1|636387_636756_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20746.1|636742_637693_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	672501	749810	4104278	protease,transposase,tRNA,integrase	Bacillus_phage(20.0%)	59	719638:719656	739526:739544
AZX20778.1|672501_673452_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20779.1|673550_675026_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX20780.1|676613_677501_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX20781.1|677503_678445_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX20782.1|678490_680056_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX23647.1|681833_683117_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZX20783.1|683341_684799_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZX20784.1|684762_685266_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZX20785.1|685290_686262_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZX20786.1|686314_686752_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX20787.1|686875_687544_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZX20788.1|688272_689376_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX20789.1|689481_690756_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX20790.1|690767_691793_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX20791.1|691794_693165_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20792.1|693165_694302_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX20793.1|694348_696274_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZX20794.1|696270_697392_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX20795.1|697388_698543_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX20796.1|698539_699670_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX20797.1|699677_701243_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX20798.1|701249_702632_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZX20799.1|702910_703522_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20800.1|703613_705029_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX20801.1|705046_705757_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX20802.1|705753_707076_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZX20803.1|707155_709117_+	sulfatase	NA	NA	NA	NA	NA
AZX20804.1|709242_710556_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZX20805.1|710664_711963_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZX20806.1|712145_713054_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20807.1|713063_713273_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZX20808.1|713284_714964_-	oxidoreductase	NA	NA	NA	NA	NA
AZX20809.1|715065_716019_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX20810.1|716109_716937_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZX20811.1|716935_718822_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX20812.1|718818_719418_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZX20813.1|719466_720366_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719638:719656	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX23648.1|720592_721525_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZX20814.1|721647_722262_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZX20815.1|722339_722987_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX20816.1|722983_723766_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX20817.1|723838_724930_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX20818.1|725209_726337_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX20819.1|726678_727725_+	Fic family protein	NA	NA	NA	NA	NA
AZX23649.1|727735_727876_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX20820.1|727872_730992_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX20821.1|730993_733945_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX20822.1|733960_735172_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX20823.1|735168_735369_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20824.1|735355_736306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20825.1|736322_736817_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX20826.1|736820_737078_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20827.1|737102_738533_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX20828.1|738614_738899_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZX20829.1|739682_740633_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
739526:739544	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX20830.1|741051_743616_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX20831.1|743660_745514_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20832.1|745846_747418_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX20833.1|748859_749810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	1004097	1061760	4104278	transposase	Bacillus_virus(22.22%)	54	NA	NA
AZX21034.1|1004097_1005048_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21035.1|1005150_1005813_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21036.1|1005915_1006326_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21037.1|1006430_1007432_+	amidase	NA	NA	NA	NA	NA
AZX21038.1|1007434_1008631_+	CoA transferase	NA	NA	NA	NA	NA
AZX21039.1|1008651_1009455_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX21040.1|1009535_1009832_+	histidine kinase	NA	NA	NA	NA	NA
AZX21041.1|1009862_1010426_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX23669.1|1010466_1011324_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX21042.1|1011331_1012081_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX21043.1|1012102_1012975_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21044.1|1013003_1013783_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX21045.1|1013816_1014614_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21046.1|1016065_1017238_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX21047.1|1017268_1017661_+	RidA family protein	NA	NA	NA	NA	NA
AZX21048.1|1017654_1018515_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX21049.1|1018518_1019481_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX23670.1|1020257_1020947_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX21050.1|1021807_1022758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21051.1|1023107_1023977_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21052.1|1024047_1024743_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX21053.1|1024732_1025242_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX21054.1|1025238_1026459_+	MFS transporter	NA	NA	NA	NA	NA
AZX21055.1|1026406_1027309_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21056.1|1029519_1030893_+	amidase	NA	NA	NA	NA	NA
AZX21057.1|1030931_1031633_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX21058.1|1031931_1032921_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX21059.1|1033021_1033483_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX21060.1|1033498_1034047_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX21061.1|1034188_1035664_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX21062.1|1035769_1036861_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX21063.1|1036864_1037647_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX21064.1|1037656_1038445_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX21065.1|1039570_1040005_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX21066.1|1040001_1041012_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX21067.1|1041055_1041982_-	VOC family protein	NA	NA	NA	NA	NA
AZX21068.1|1042268_1042637_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX23671.1|1042853_1043804_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23672.1|1043785_1046275_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX21069.1|1046323_1047016_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX21070.1|1047088_1048288_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX21071.1|1048305_1049211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21072.1|1049326_1050256_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX23673.1|1050281_1051628_+	MFS transporter	NA	NA	NA	NA	NA
AZX23674.1|1051655_1052405_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX21073.1|1052418_1053201_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX21074.1|1053393_1054344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21075.1|1054405_1055551_-	porin	NA	NA	NA	NA	NA
AZX21076.1|1056027_1056864_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX21077.1|1056933_1057899_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21078.1|1057895_1058846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21079.1|1058832_1059027_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21080.1|1059231_1059774_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21081.1|1060809_1061760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	1066242	1098133	4104278	transposase	Bacillus_virus(50.0%)	29	NA	NA
AZX21085.1|1066242_1067193_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21086.1|1067189_1069298_-	AsmA family protein	NA	NA	NA	NA	NA
AZX21087.1|1069442_1070102_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX21088.1|1070133_1070598_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX21089.1|1070873_1071059_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21090.1|1071110_1071863_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX21091.1|1071869_1073132_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX21092.1|1073173_1074412_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21093.1|1075489_1076617_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX21094.1|1076627_1077455_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX21095.1|1077441_1078308_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX21096.1|1079674_1080079_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21097.1|1080170_1081121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23676.1|1081490_1082402_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX21098.1|1082416_1083127_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21099.1|1083123_1084368_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX21100.1|1084369_1084804_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX21101.1|1084832_1085138_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX21102.1|1085031_1085250_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21103.1|1085236_1086187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21104.1|1086243_1087392_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX21105.1|1087472_1088423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21106.1|1088954_1089752_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX21107.1|1089799_1090453_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX21108.1|1090409_1091498_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX21109.1|1091662_1093888_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX21110.1|1096165_1097062_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX21111.1|1096950_1097196_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21112.1|1097182_1098133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	1128519	1199489	4104278	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX21141.1|1128519_1129470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21142.1|1129526_1130639_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX21143.1|1133022_1133973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21144.1|1134563_1135340_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX21145.1|1135457_1135721_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX21146.1|1135821_1136826_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX21147.1|1137026_1138628_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX21148.1|1138653_1139412_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX21149.1|1139503_1140160_-	adenylate kinase	NA	NA	NA	NA	NA
AZX21150.1|1140250_1141015_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX21151.1|1141024_1141213_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21152.1|1141268_1142312_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX21153.1|1142308_1142722_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX21154.1|1142718_1143339_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX21155.1|1143619_1144570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21156.1|1144737_1146129_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX21157.1|1146201_1146780_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX21158.1|1146896_1148294_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX21159.1|1148409_1149615_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX21160.1|1149714_1150233_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX21161.1|1150327_1150573_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX21162.1|1150800_1151115_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX21163.1|1151204_1156394_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX23678.1|1156390_1158559_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX21164.1|1158578_1160930_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX21165.1|1160934_1162254_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX21166.1|1162272_1163946_+	MCE family protein	NA	NA	NA	NA	NA
AZX21167.1|1163950_1164619_+	lipoprotein	NA	NA	NA	NA	NA
AZX21168.1|1164775_1168597_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX21169.1|1168927_1169878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21170.1|1169899_1171045_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX21171.1|1171193_1172123_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX21172.1|1172119_1173208_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX21173.1|1173204_1174008_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX21174.1|1174004_1174736_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX21175.1|1174793_1176083_-	MFS transporter	NA	NA	NA	NA	NA
AZX21176.1|1176179_1176782_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21177.1|1181334_1181673_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX21178.1|1182341_1182647_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21179.1|1184353_1185304_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21180.1|1185300_1186632_-	MFS transporter	NA	NA	NA	NA	NA
AZX21181.1|1187871_1189893_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX21182.1|1189885_1190527_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX21183.1|1190523_1190931_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX21184.1|1190927_1191728_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX21185.1|1191802_1192507_+	oxidoreductase	NA	NA	NA	NA	NA
AZX21186.1|1192538_1193333_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX21187.1|1193329_1194280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21188.1|1194378_1195329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21189.1|1195427_1195862_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX21190.1|1195944_1198281_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX23679.1|1198472_1199489_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	1299707	1356918	4104278	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX21267.1|1299707_1300658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21268.1|1304404_1305016_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX21269.1|1305238_1306699_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX21270.1|1306795_1308388_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX21271.1|1308374_1308653_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21272.1|1308711_1308999_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX21273.1|1309000_1310341_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX21274.1|1310436_1311126_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21275.1|1311138_1312569_+	MFS transporter	NA	NA	NA	NA	NA
AZX21276.1|1314293_1315115_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21277.1|1315125_1316697_+	amidohydrolase	NA	NA	NA	NA	NA
AZX21278.1|1316725_1317703_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX21279.1|1317729_1318533_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX21280.1|1318529_1319324_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX21281.1|1319331_1320567_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX21282.1|1320559_1320994_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX21283.1|1321743_1322694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21284.1|1323315_1325043_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX21285.1|1325154_1326513_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX21286.1|1326633_1326819_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21287.1|1326805_1327756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21288.1|1327796_1328867_+	FUSC family protein	NA	NA	NA	NA	NA
AZX23685.1|1328889_1329768_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX21289.1|1329939_1330911_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX21290.1|1331073_1331916_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21291.1|1332077_1332758_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX21292.1|1332751_1333921_+	amine oxidase	NA	NA	NA	NA	NA
AZX21293.1|1333917_1334949_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX21294.1|1334992_1336234_+	MFS transporter	NA	NA	NA	NA	NA
AZX21295.1|1336268_1337801_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX21296.1|1337881_1338505_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX21297.1|1338535_1339147_+	LysE family translocator	NA	NA	NA	NA	NA
AZX21298.1|1339182_1339653_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX21299.1|1340084_1341089_+	peptidase M20	NA	NA	NA	NA	NA
AZX21300.1|1341125_1342640_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX21301.1|1342643_1343603_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX21302.1|1343631_1344435_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX21303.1|1344436_1346071_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX21304.1|1346154_1347216_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX21305.1|1347414_1347684_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21306.1|1347687_1348212_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX21307.1|1348627_1349578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21308.1|1349574_1350645_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX21309.1|1350717_1351356_+	DedA family protein	NA	NA	NA	NA	NA
AZX21310.1|1351650_1351878_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX21311.1|1352000_1352714_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX21312.1|1352958_1353909_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21313.1|1354012_1354294_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21314.1|1354408_1355857_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX21315.1|1355967_1356918_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	1447151	1499304	4104278	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZX21397.1|1447151_1448102_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21398.1|1448268_1448622_+	cytochrome C	NA	NA	NA	NA	NA
AZX21399.1|1448634_1448997_+	cytochrome	NA	NA	NA	NA	NA
AZX21400.1|1449038_1449464_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX21401.1|1449666_1450923_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX21402.1|1451121_1452102_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21403.1|1452251_1453493_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21404.1|1453591_1454542_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21405.1|1454550_1455246_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX21406.1|1458067_1458667_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX21407.1|1458677_1460843_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX21408.1|1460866_1462651_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX21409.1|1462650_1462740_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX21410.1|1463434_1463707_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX21411.1|1463706_1465773_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX21412.1|1465769_1466720_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21413.1|1466818_1467769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21414.1|1467884_1468217_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX21415.1|1468213_1468900_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX21416.1|1468886_1469846_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX23693.1|1469887_1472248_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX21417.1|1472247_1472880_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX21418.1|1472942_1474322_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX21419.1|1474368_1475724_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX21420.1|1476002_1476251_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21421.1|1476438_1476756_-	virulence factor	NA	NA	NA	NA	NA
AZX21422.1|1477028_1477544_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX21423.1|1477637_1477799_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21424.1|1477814_1478570_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX21425.1|1478908_1479115_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21426.1|1479122_1479782_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX21427.1|1480076_1482281_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX21428.1|1482391_1483615_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX21429.1|1483737_1484712_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX21430.1|1484779_1485973_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX21431.1|1485987_1486788_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX21432.1|1486784_1488641_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX21433.1|1488637_1489243_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX21434.1|1489261_1490647_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX21435.1|1491372_1492599_+	transporter	NA	NA	NA	NA	NA
AZX21436.1|1492687_1493470_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX21437.1|1493568_1494519_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21438.1|1494545_1495319_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX21439.1|1495330_1496572_+	MFS transporter	NA	NA	NA	NA	NA
AZX21440.1|1498353_1499304_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	1543229	1602091	4104278	protease,tRNA,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZX23694.1|1543229_1543718_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX21488.1|1543835_1544414_+|protease	protease	protease	NA	NA	NA	NA
AZX21489.1|1544486_1544888_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX21490.1|1544986_1545937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21491.1|1545943_1547056_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX21492.1|1547742_1548945_+	MFS transporter	NA	NA	NA	NA	NA
AZX21493.1|1549148_1551809_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21494.1|1551821_1555226_+	nuclease	NA	NA	NA	NA	NA
AZX21495.1|1555893_1558119_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX21496.1|1558165_1558492_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX21497.1|1558542_1559151_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX21498.1|1559249_1560200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21499.1|1560269_1561034_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX21500.1|1561030_1561630_-	hypothetical protein	NA	NA	NA	NA	NA
AZX23695.1|1561733_1562579_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX21501.1|1562644_1563271_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX21502.1|1563267_1564218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21503.1|1564204_1564393_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21504.1|1564316_1565438_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX21505.1|1565418_1566420_-	aminopeptidase	NA	NA	NA	NA	NA
AZX21506.1|1566525_1568037_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX21507.1|1568033_1569338_-	peptidase	NA	NA	NA	NA	NA
AZX21508.1|1569449_1570010_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX21509.1|1570277_1570832_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX21510.1|1571287_1571503_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX23696.1|1571757_1574355_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX21511.1|1574351_1575539_+	cupin	NA	NA	NA	NA	NA
AZX21512.1|1576196_1576811_+	fimbrial protein	NA	NA	NA	NA	NA
AZX21513.1|1576899_1578027_-	lipoprotein	NA	NA	NA	NA	NA
AZX21514.1|1578038_1578944_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX21515.1|1579836_1580787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21516.1|1580968_1581721_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX21517.1|1581789_1582449_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX21518.1|1582445_1583174_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX21519.1|1583186_1585466_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX21520.1|1585490_1585694_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX21521.1|1585735_1586383_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX21522.1|1586503_1587421_-	cytochrome C	NA	NA	NA	NA	NA
AZX21523.1|1587417_1588131_-	cytochrome C	NA	NA	NA	NA	NA
AZX21524.1|1588368_1589139_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX21525.1|1589143_1589743_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX21526.1|1589987_1591478_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX21527.1|1591536_1591821_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX21528.1|1591817_1591946_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21529.1|1591958_1592114_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21530.1|1592386_1593313_-	YicC family protein	NA	NA	NA	NA	NA
AZX21531.1|1593449_1594190_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX21532.1|1594356_1595733_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX21533.1|1595914_1596820_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX21534.1|1596854_1598594_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX21535.1|1598471_1600274_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX21536.1|1600391_1601042_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX21537.1|1601140_1602091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	1647263	1702854	4104278	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX21568.1|1647263_1648214_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21569.1|1648272_1649046_+	oxidoreductase	NA	NA	NA	NA	NA
AZX21570.1|1649038_1650595_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX21571.1|1650591_1651542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21572.1|1652868_1653471_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21573.1|1653710_1654412_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX21574.1|1654405_1655188_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX21575.1|1655372_1656323_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21576.1|1656421_1657159_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX21577.1|1657348_1658107_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX21578.1|1658153_1659143_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX21579.1|1659320_1660289_-	transporter	NA	NA	NA	NA	NA
AZX21580.1|1661828_1662797_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX21581.1|1662805_1663747_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX21582.1|1664220_1665231_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23700.1|1665221_1666736_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX21583.1|1666732_1668079_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23701.1|1668081_1669116_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX21584.1|1669165_1670791_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX21585.1|1671343_1672294_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21586.1|1672398_1673346_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23702.1|1673399_1675214_-	histidine kinase	NA	NA	NA	NA	NA
AZX21587.1|1675206_1675881_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX21588.1|1676010_1679085_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX21589.1|1679098_1679398_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX23703.1|1679712_1680336_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX21590.1|1680579_1681449_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX21591.1|1681426_1682371_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX23704.1|1682456_1683428_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX23705.1|1683495_1684269_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX21592.1|1684265_1685462_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX21593.1|1685492_1686443_-	hydrolase	NA	NA	NA	NA	NA
AZX21594.1|1686664_1687354_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX21595.1|1687418_1688174_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX21596.1|1688225_1689218_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX21597.1|1689227_1690181_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX23706.1|1690296_1691259_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX21598.1|1692660_1693089_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21599.1|1693085_1694036_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23707.1|1694329_1695052_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX21600.1|1695490_1696678_-	MFS transporter	NA	NA	NA	NA	NA
AZX21601.1|1696681_1697062_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21602.1|1698781_1699753_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX21603.1|1699766_1700480_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX21604.1|1700484_1701402_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21605.1|1701508_1701805_+	hypothetical protein	NA	NA	NA	NA	NA
AZX21606.1|1701903_1702854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	2145839	2201075	4104278	protease,transposase	Lake_Baikal_phage(25.0%)	50	NA	NA
AZX21953.1|2145839_2146790_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21954.1|2146990_2147800_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX21955.1|2147924_2148875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21956.1|2148871_2149765_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX21957.1|2149889_2150084_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX21958.1|2150083_2150425_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX21959.1|2150434_2152297_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX21960.1|2152426_2152939_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX21961.1|2152941_2153265_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX21962.1|2153266_2153677_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX21963.1|2153714_2154926_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX21964.1|2154943_2155456_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX21965.1|2155671_2156163_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX21966.1|2156415_2158452_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX21967.1|2158529_2159732_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX21968.1|2159782_2160511_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX21969.1|2162068_2163019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX21970.1|2163589_2163802_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21971.1|2163819_2164551_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21972.1|2164585_2165227_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX21973.1|2165219_2165936_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX21974.1|2168100_2168877_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX21975.1|2168898_2170056_-	thiolase	NA	NA	NA	NA	NA
AZX21976.1|2170052_2170484_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21977.1|2170480_2171284_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX21978.1|2171297_2171753_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX21979.1|2171765_2172737_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX21980.1|2172802_2174026_-	CoA transferase	NA	NA	NA	NA	NA
AZX21981.1|2174253_2175204_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX21982.1|2175327_2177781_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX21983.1|2177969_2179274_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX21984.1|2179378_2180032_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX21985.1|2180034_2181345_-	trigger factor	NA	NA	NA	NA	NA
AZX21986.1|2181523_2182102_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX21987.1|2182213_2182414_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX21988.1|2182759_2183326_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX21989.1|2183409_2183613_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX21990.1|2183919_2184240_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21991.1|2184281_2184563_-	hypothetical protein	NA	NA	NA	NA	NA
AZX21992.1|2184637_2185894_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX21993.1|2186276_2186606_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX21994.1|2188176_2188998_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX21995.1|2188997_2190137_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX21996.1|2190143_2191040_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX21997.1|2191036_2192962_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX21998.1|2193321_2195934_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX21999.1|2195986_2198287_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX22000.1|2198283_2199492_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX22001.1|2199753_2200128_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22002.1|2200124_2201075_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	2204182	2258452	4104278	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
AZX22005.1|2204182_2207044_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX22006.1|2207046_2207553_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX22007.1|2207657_2208866_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX22008.1|2208867_2209806_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22009.1|2209967_2210441_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX22010.1|2210437_2211388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22011.1|2211374_2211554_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22012.1|2211498_2211939_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX22013.1|2212067_2213297_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX22014.1|2213335_2214157_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX22015.1|2214210_2215362_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX22016.1|2215453_2215942_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX22017.1|2218468_2221042_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX22018.1|2221112_2223686_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX22019.1|2223951_2224152_+	CsbD family protein	NA	NA	NA	NA	NA
AZX22020.1|2224183_2224345_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX22021.1|2224402_2224741_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX22022.1|2224889_2225840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22023.1|2225938_2226889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22024.1|2226987_2227707_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX23726.1|2227783_2228332_+	arylesterase	NA	NA	NA	NA	NA
AZX22025.1|2228313_2230329_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX22026.1|2230511_2231261_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX22027.1|2231273_2232137_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX22028.1|2232140_2233556_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX22029.1|2233689_2234418_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX22030.1|2234556_2234757_-	copper chaperone	NA	NA	NA	NA	NA
AZX22031.1|2234932_2235331_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX22032.1|2235354_2236755_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX23727.1|2236873_2237626_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22033.1|2237914_2238592_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22034.1|2238618_2239398_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX22035.1|2239394_2240279_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX23728.1|2240296_2240986_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX22036.1|2241060_2241819_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX22037.1|2241944_2242592_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX23729.1|2242859_2243876_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX22038.1|2243973_2245014_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX22039.1|2245148_2246441_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX22040.1|2247800_2248184_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX22041.1|2248201_2248789_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX22042.1|2248826_2249777_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22043.1|2249875_2250436_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX22044.1|2250432_2250978_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22045.1|2251173_2252202_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22046.1|2252242_2253583_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX22047.1|2253691_2254696_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX22048.1|2254802_2257403_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX22049.1|2257501_2258452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	2605557	2672057	4104278	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX22345.1|2605557_2606508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22346.1|2606877_2607450_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX22347.1|2607452_2608463_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX22348.1|2608455_2608956_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX22349.1|2608966_2609308_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX22350.1|2609319_2610111_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX22351.1|2610127_2610397_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX22352.1|2610419_2611208_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX22353.1|2611254_2612271_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX22354.1|2612487_2613930_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX22355.1|2614108_2615728_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX22356.1|2615848_2617669_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX22357.1|2617747_2619280_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX22358.1|2619313_2620960_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX22359.1|2621029_2622052_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX22360.1|2622069_2623203_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX22361.1|2623205_2623895_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX22362.1|2623894_2624680_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX22363.1|2624723_2625488_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX22364.1|2625526_2626948_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX22365.1|2627013_2627718_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX22366.1|2627765_2628185_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX22367.1|2628197_2628605_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX23743.1|2628788_2629499_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX22368.1|2629625_2629916_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX22369.1|2629933_2630416_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX22370.1|2634921_2636076_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX23744.1|2636381_2637398_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX22371.1|2637644_2638433_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX22372.1|2638499_2639180_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX22373.1|2639176_2639947_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX22374.1|2640045_2640996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22375.1|2641051_2641969_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX22376.1|2641979_2643158_-	mandelate racemase	NA	NA	NA	NA	NA
AZX22377.1|2643177_2644173_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX22378.1|2645761_2646370_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX22379.1|2646357_2647398_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX22380.1|2647415_2648378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX22381.1|2648374_2649568_-	CoA transferase	NA	NA	NA	NA	NA
AZX22382.1|2649564_2650362_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX22383.1|2650387_2651374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX22384.1|2651392_2653432_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX23745.1|2653633_2654314_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22385.1|2654327_2655239_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX22386.1|2655235_2655814_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX22387.1|2655952_2656858_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22388.1|2656865_2660285_+	nuclease	NA	NA	NA	NA	NA
AZX22389.1|2660272_2662873_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX22390.1|2663828_2664461_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22391.1|2664854_2665613_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22392.1|2665609_2666812_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX22393.1|2666999_2667950_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22394.1|2668857_2670003_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX23746.1|2670022_2670745_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX22395.1|2670861_2671041_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22396.1|2671106_2672057_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	2894908	2973935	4104278	transposase,holin,tRNA	Planktothrix_phage(18.18%)	60	NA	NA
AZX22571.1|2894908_2895859_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX22572.1|2895905_2896460_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX22573.1|2896527_2897373_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX22574.1|2897442_2898411_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX22575.1|2898410_2900207_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22576.1|2902106_2906033_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX22577.1|2906323_2906500_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22578.1|2906768_2909999_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX22579.1|2910280_2911108_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX22580.1|2911141_2911837_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX22581.1|2911829_2913110_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX22582.1|2913119_2914097_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23762.1|2914078_2915779_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX22583.1|2915881_2916985_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX22584.1|2917015_2917771_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX22585.1|2917777_2919298_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX22586.1|2919340_2919643_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22587.1|2919639_2920272_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22588.1|2920350_2922216_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX22589.1|2922212_2923028_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX22590.1|2923035_2924151_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX22591.1|2925055_2925934_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX22592.1|2925933_2926758_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX22593.1|2928057_2930937_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX22594.1|2930918_2931695_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX22595.1|2931787_2933251_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX22596.1|2933247_2933619_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX22597.1|2933636_2934950_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22598.1|2934986_2935445_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX22599.1|2935557_2936508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22600.1|2936504_2937518_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX22601.1|2937657_2938644_+	homoserine kinase	NA	NA	NA	NA	NA
AZX22602.1|2938687_2939488_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22603.1|2940290_2941241_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22604.1|2941392_2941995_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22605.1|2942013_2942646_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX22606.1|2942883_2944770_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX22607.1|2944788_2945631_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX22608.1|2945627_2946986_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX22609.1|2947206_2948001_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX22610.1|2948231_2949725_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX22611.1|2949960_2952042_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX22612.1|2952236_2953277_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX22613.1|2953411_2954428_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX22614.1|2954449_2955307_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX23763.1|2955351_2956128_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX22615.1|2956495_2957446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22616.1|2957472_2957937_-	barstar family protein 2	NA	NA	NA	NA	NA
AZX22617.1|2959143_2961432_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX22618.1|2961548_2962421_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22619.1|2962463_2963618_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX22620.1|2963652_2964483_-	transglycosylase	NA	NA	NA	NA	NA
AZX22621.1|2964566_2966111_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX22622.1|2966153_2966513_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22623.1|2966514_2966928_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX22624.1|2966968_2967286_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX22625.1|2967370_2968087_-	hypothetical protein	NA	NA	NA	NA	NA
AZX23764.1|2968350_2969772_+	siroheme synthase	NA	NA	NA	NA	NA
AZX22626.1|2969838_2972586_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZX22627.1|2972918_2973935_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	2982556	3055072	4104278	transposase,tRNA	Pseudomonas_phage(14.29%)	59	NA	NA
AZX23766.1|2982556_2983573_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX22634.1|2984510_2985938_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX22635.1|2985934_2986957_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX22636.1|2986946_2987420_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX22637.1|2987545_2988448_+	transporter associated domain protein	NA	NA	NA	NA	NA
AZX22638.1|2988444_2990088_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX23767.1|2990084_2991092_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX23768.1|2991922_2992939_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX22639.1|2993038_2993671_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX22640.1|2993679_2994069_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX22641.1|2994121_2995174_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX22642.1|2996037_2997744_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX22643.1|2997817_2998318_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX22644.1|2998332_3000390_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX22645.1|3000416_3000710_-	response regulator	NA	NA	NA	NA	NA
AZX22646.1|3000811_3001759_-	motility protein MotB	NA	NA	NA	NA	NA
AZX22647.1|3001771_3002647_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX22648.1|3002767_3003328_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX22649.1|3003362_3003686_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX22650.1|3004121_3004859_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX22651.1|3005157_3006108_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22652.1|3006351_3006615_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX22653.1|3006688_3006970_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22654.1|3006986_3007847_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX22655.1|3007843_3008179_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22656.1|3008232_3008883_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX22657.1|3010563_3011508_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22658.1|3011553_3011871_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22659.1|3011873_3012812_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX22660.1|3012989_3013475_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX22661.1|3013493_3014042_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX22662.1|3014318_3015452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22663.1|3015489_3016197_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZX23769.1|3016351_3018700_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX22664.1|3018696_3019635_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX22665.1|3019660_3020851_+	acetate kinase	NA	NA	NA	NA	NA
AZX22666.1|3020847_3021621_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX22667.1|3021650_3022844_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX22668.1|3022961_3023972_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX22669.1|3023989_3026026_-	transketolase	NA	NA	NA	NA	NA
AZX22670.1|3026220_3026961_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX22671.1|3028051_3029227_+	flagellin FliC	NA	NA	NA	NA	NA
AZX22672.1|3029448_3031239_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX22673.1|3031251_3032913_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX22674.1|3032925_3035631_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX22675.1|3035923_3037678_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX22676.1|3037674_3038301_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX22677.1|3038297_3039149_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX22678.1|3039224_3041339_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX22679.1|3041489_3042140_+	SCO family protein	NA	NA	NA	NA	NA
AZX22680.1|3042285_3042537_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX22681.1|3042606_3043989_-	multidrug transporter	NA	NA	NA	NA	NA
AZX22682.1|3043985_3047165_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX23770.1|3047972_3048890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22683.1|3048941_3049673_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX22684.1|3049732_3050305_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX23771.1|3051813_3052830_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX22685.1|3052967_3054017_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX22686.1|3054121_3055072_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	3074472	3139412	4104278	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX22701.1|3074472_3075423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22702.1|3075521_3076106_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX22703.1|3076140_3077130_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX22704.1|3077126_3078068_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX22705.1|3078064_3079285_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX22706.1|3079327_3079642_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX22707.1|3079833_3080193_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX22708.1|3080194_3081925_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX22709.1|3082097_3082769_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX22710.1|3082783_3084112_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX22711.1|3084108_3085008_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX22712.1|3085094_3086180_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX22713.1|3086172_3087306_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX22714.1|3087305_3089987_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX22715.1|3090357_3090939_+	OmpA family protein	NA	NA	NA	NA	NA
AZX22716.1|3091016_3091790_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX22717.1|3091786_3092464_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX22718.1|3092679_3093861_+	MFS transporter	NA	NA	NA	NA	NA
AZX22719.1|3094337_3094595_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22720.1|3094633_3094816_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX22721.1|3094845_3095796_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23773.1|3095925_3096318_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX22722.1|3096594_3097506_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX22723.1|3097630_3098605_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX22724.1|3098601_3099552_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22725.1|3099650_3100736_-	DNA polymerase IV	NA	NA	NA	NA	NA
AZX22726.1|3100833_3101244_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX22727.1|3101859_3103773_+	S9 family peptidase	NA	NA	NA	NA	NA
AZX22728.1|3103908_3106521_+	penicillin-binding protein	NA	NA	NA	NA	NA
AZX22729.1|3106522_3107257_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX22730.1|3107420_3108602_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX22731.1|3108598_3108811_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22732.1|3108807_3109788_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX23774.1|3109833_3110661_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX22733.1|3110807_3112625_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX22734.1|3112679_3113063_+	ferredoxin	NA	NA	NA	NA	NA
AZX22735.1|3113059_3114010_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22736.1|3114122_3114374_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22737.1|3114567_3114783_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22738.1|3114879_3115998_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX22739.1|3116117_3116330_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22740.1|3116489_3116711_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22741.1|3116763_3117714_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22742.1|3118890_3120261_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX22743.1|3120293_3121085_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22744.1|3121097_3122153_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22745.1|3122178_3123054_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22746.1|3123159_3123408_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22747.1|3123442_3124897_-	carboxylase	NA	NA	NA	NA	NA
AZX22748.1|3124893_3125415_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX22749.1|3125443_3126796_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX22750.1|3127019_3129908_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX22751.1|3132052_3133354_+	phospholipase	NA	NA	NA	NA	NA
AZX22752.1|3133368_3134085_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX22753.1|3134366_3135047_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX22754.1|3135058_3135226_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22755.1|3135334_3135487_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22756.1|3135574_3136234_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX22757.1|3136614_3138465_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX22758.1|3138461_3139412_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	3236620	3305244	4104278	transposase	Bacillus_virus(25.0%)	56	NA	NA
AZX22835.1|3236620_3237571_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22836.1|3237676_3238612_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX22837.1|3238811_3240506_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX22838.1|3240540_3241467_+	VOC family protein	NA	NA	NA	NA	NA
AZX23778.1|3241535_3242633_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22839.1|3242651_3243515_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX22840.1|3243526_3244309_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX22841.1|3244305_3245424_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX22842.1|3245420_3246953_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX22843.1|3246993_3248001_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX22844.1|3248145_3248868_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22845.1|3248883_3249906_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX22846.1|3250222_3250957_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22847.1|3251041_3252787_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX22848.1|3252783_3253536_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX22849.1|3253580_3254537_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX22850.1|3254625_3255192_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22851.1|3255199_3256060_-	aminotransferase	NA	NA	NA	NA	NA
AZX22852.1|3256089_3256833_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX22853.1|3256849_3257533_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX22854.1|3258370_3259285_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX22855.1|3259349_3260258_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22856.1|3260348_3261773_-	protein CyaE	NA	NA	NA	NA	NA
AZX22857.1|3261774_3263097_-	protein CyaD	NA	NA	NA	NA	NA
AZX22858.1|3263093_3265232_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX22859.1|3265309_3270430_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX23779.1|3270616_3270796_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22860.1|3270878_3271466_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX22861.1|3271481_3272963_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX22862.1|3273017_3274871_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22863.1|3275133_3276471_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX22864.1|3276505_3278503_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX22865.1|3278520_3280569_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX22866.1|3280699_3281566_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX22867.1|3281834_3282800_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX22868.1|3282914_3284063_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX22869.1|3284487_3284799_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX22870.1|3284832_3285093_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX22871.1|3285242_3286376_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX22872.1|3286446_3287583_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX22873.1|3287748_3288543_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX22874.1|3288605_3289049_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX22875.1|3289164_3290115_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22876.1|3290213_3291164_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22877.1|3291150_3291339_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22878.1|3291286_3291694_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX22879.1|3291766_3293962_+	DNA methylase	NA	NA	NA	NA	NA
AZX22880.1|3294183_3295134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22881.1|3295093_3295618_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX22882.1|3295749_3296721_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23780.1|3296840_3299285_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX22883.1|3299300_3299891_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX22884.1|3300134_3301085_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22885.1|3301242_3302508_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX22886.1|3302541_3303639_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX22887.1|3304293_3305244_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	3316531	3416644	4104278	transposase,tail,terminase,tRNA	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX22898.1|3316531_3317482_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22899.1|3318213_3318591_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX22900.1|3318575_3319277_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22901.1|3319420_3320113_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX22902.1|3320112_3321216_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX22903.1|3321325_3323698_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX22904.1|3323694_3325254_+	chaperone SurA	NA	NA	NA	NA	NA
AZX22905.1|3325278_3326076_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX22906.1|3326107_3327253_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX22907.1|3327357_3328800_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX23781.1|3328802_3329891_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22908.1|3332169_3333120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22909.1|3333106_3333325_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22910.1|3334249_3334807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX22911.1|3334782_3335133_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22912.1|3335301_3336096_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX22913.1|3336092_3337142_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX22914.1|3337141_3337831_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX22915.1|3337917_3338415_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX22916.1|3338446_3339763_-	protein TolB	NA	NA	NA	NA	NA
AZX22917.1|3339779_3340754_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX22918.1|3340790_3341249_-	protein TolR	NA	NA	NA	NA	NA
AZX22919.1|3341248_3341929_-	protein TolQ	NA	NA	NA	NA	NA
AZX22920.1|3341931_3342360_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX22921.1|3342412_3344143_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX22922.1|3344208_3344781_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX22923.1|3344761_3345448_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX22924.1|3345803_3346475_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX22925.1|3346481_3346682_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22926.1|3347024_3347306_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22927.1|3347302_3347836_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX22928.1|3347817_3348369_-	lysozyme	NA	NA	NA	NA	NA
AZX22929.1|3348347_3348590_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22930.1|3348594_3349407_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22931.1|3349406_3349670_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22932.1|3349888_3350305_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22933.1|3350309_3354266_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX22934.1|3354258_3354648_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX22935.1|3354644_3355178_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX22936.1|3355245_3355605_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22937.1|3355614_3358227_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX22938.1|3358252_3358543_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX22939.1|3358560_3358890_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX22940.1|3358899_3359418_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX22941.1|3359672_3360173_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX22942.1|3360180_3360603_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22943.1|3360599_3360998_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX22944.1|3360994_3361390_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX22945.1|3361389_3361590_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22946.1|3361591_3362074_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX22947.1|3362136_3362388_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22948.1|3362397_3363045_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX22949.1|3363062_3364013_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22950.1|3364441_3365044_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX22951.1|3365166_3365409_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX23782.1|3365414_3366470_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX22952.1|3366498_3367917_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX22953.1|3367919_3369197_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX22954.1|3369183_3369633_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX22955.1|3370308_3371259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22956.1|3371276_3371498_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22957.1|3371512_3372211_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22958.1|3372203_3372524_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23783.1|3373003_3373615_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX22959.1|3373680_3373893_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22960.1|3374144_3375095_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22961.1|3375193_3376267_-	hypothetical protein	NA	NA	NA	NA	NA
AZX22962.1|3376434_3377229_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX22963.1|3377268_3377793_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX22964.1|3377785_3379528_-	sulfite reductase	NA	NA	NA	NA	NA
AZX22965.1|3379737_3380496_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX22966.1|3380498_3381206_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX22967.1|3381222_3382104_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX22968.1|3382114_3382873_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX23784.1|3382841_3383597_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22969.1|3383666_3385085_+	amidase	NA	NA	NA	NA	NA
AZX22970.1|3385106_3385757_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX22971.1|3385890_3386226_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX22972.1|3386314_3387265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22973.1|3387341_3389162_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX22974.1|3389166_3390240_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX22975.1|3390362_3391331_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX22976.1|3391404_3392316_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX22977.1|3392334_3392907_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX22978.1|3392987_3393536_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX22979.1|3393535_3395125_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX22980.1|3395194_3395434_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX22981.1|3395474_3396506_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX22982.1|3396565_3397747_-	monooxygenase	NA	NA	NA	NA	NA
AZX22983.1|3397843_3398296_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22984.1|3398305_3399646_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX22985.1|3399962_3401000_+	hypothetical protein	NA	NA	NA	NA	NA
AZX22986.1|3401381_3401741_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23785.1|3401824_3402766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22987.1|3402840_3403791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX22988.1|3404084_3405179_+	porin	NA	NA	NA	NA	NA
AZX22989.1|3405260_3406142_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX22990.1|3406163_3407003_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX22991.1|3407078_3408596_+	peptidase	NA	NA	NA	NA	NA
AZX22992.1|3408692_3409793_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX22993.1|3409809_3410232_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX22994.1|3410254_3410467_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX22995.1|3410513_3411434_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX23786.1|3411697_3412366_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX22996.1|3412368_3412698_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX22997.1|3412904_3414338_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX22998.1|3414349_3414733_-	thioredoxin	NA	NA	NA	NA	NA
AZX22999.1|3414794_3415595_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23000.1|3415693_3416644_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025358	Bordetella pertussis strain D322 chromosome, complete genome	4104278	4003346	4068258	4104278	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX23525.1|4003346_4003832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23526.1|4004050_4005031_+	protein BugT	NA	NA	NA	NA	NA
AZX23527.1|4005297_4006107_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX23528.1|4006146_4006827_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX23529.1|4006820_4007279_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX23530.1|4007290_4007653_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX23531.1|4007735_4008419_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX23532.1|4008474_4008783_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX23533.1|4008801_4009116_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX23534.1|4009112_4011587_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX23535.1|4011594_4012986_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX23536.1|4012982_4013168_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX23537.1|4013146_4013848_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX23538.1|4013844_4014666_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX23809.1|4014646_4015771_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX23539.1|4015763_4016783_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX23540.1|4016988_4018023_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX23810.1|4018123_4018915_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX23541.1|4018997_4019372_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX23542.1|4019349_4020759_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX23543.1|4020751_4022134_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX23544.1|4022468_4024073_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX23545.1|4024108_4025122_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX23546.1|4025132_4026059_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX23547.1|4026449_4027400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23548.1|4027569_4028796_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX23549.1|4028995_4029862_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX23550.1|4029854_4030817_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX23551.1|4030917_4031868_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23552.1|4031966_4032917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23553.1|4033015_4033966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX23554.1|4033962_4035456_-	RND transporter	NA	NA	NA	NA	NA
AZX23555.1|4035452_4038560_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX23556.1|4038556_4041625_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX23557.1|4041621_4042872_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX23558.1|4043052_4043814_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX23559.1|4043846_4044497_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX23560.1|4044499_4045339_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX23561.1|4045579_4046323_+	hypothetical protein	NA	NA	NA	NA	NA
AZX23562.1|4046405_4046753_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX23563.1|4046850_4047693_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX23564.1|4047737_4048625_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX23565.1|4048651_4048840_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX23566.1|4048937_4050395_+	MFS transporter	NA	NA	NA	NA	NA
AZX23567.1|4050381_4051908_+	glycerol kinase	NA	NA	NA	NA	NA
AZX23568.1|4051926_4052394_-	hypothetical protein	NA	NA	NA	NA	NA
AZX23569.1|4052393_4053416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX23570.1|4053536_4054277_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX23571.1|4054331_4055432_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX23572.1|4055433_4056624_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX23573.1|4056743_4057760_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX23574.1|4058078_4058750_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX23575.1|4058746_4059655_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX23576.1|4059866_4060514_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX23577.1|4064365_4065442_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX23578.1|4065452_4066262_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX23579.1|4066351_4067125_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX23580.1|4067307_4068258_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
