The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	0	122073	4101116	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY17244.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY17245.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY17246.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY17247.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY17248.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY17249.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY17250.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY17251.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY17252.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY17253.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY17254.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY17255.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY17256.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY17257.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY20617.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY17258.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17259.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY17260.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY17261.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17262.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY17263.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17264.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY17265.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY20618.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17266.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY17267.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY17268.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17269.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY17270.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY17271.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY17272.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY17273.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY17274.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY17275.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY17276.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY17277.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY17278.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17279.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17280.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY17281.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17282.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY17283.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY17284.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17285.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY17286.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY17287.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY17288.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY17289.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY17290.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17291.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17292.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY17293.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY17294.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17295.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17296.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY17297.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY17298.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY17299.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY17300.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17301.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17302.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY17303.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY17304.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY17305.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY17306.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20619.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17307.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY17308.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20620.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17309.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY17310.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY17311.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY17312.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY17313.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY17314.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY17315.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY17316.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY17317.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY17318.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY20621.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY17319.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY17320.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17321.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY17322.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY17323.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY17324.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY17325.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17326.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY17327.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY17328.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY17329.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY17330.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY17331.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY17332.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY17333.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY17334.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY17335.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17336.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY17337.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY17338.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY17339.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY20622.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY17340.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20623.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY17341.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY17342.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY17343.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17344.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY17345.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY17346.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	164892	225402	4101116	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	50	NA	NA
AZY17377.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17378.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
AZY17379.1|169125_170508_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY17380.1|170541_171171_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY17381.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY17382.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20629.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
AZY17383.1|174299_175250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17384.1|176365_176893_+	lipoprotein	NA	NA	NA	NA	NA
AZY17385.1|176984_177800_+	lipoprotein	NA	NA	NA	NA	NA
AZY17386.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY17387.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY17388.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17389.1|181331_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY17390.1|182423_184328_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY17391.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY17392.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY17393.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
AZY17394.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY20630.1|189528_189975_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY17395.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17396.1|190753_193024_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY17397.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY17398.1|194403_195354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17399.1|195399_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY17400.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY17401.1|197376_198477_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY17402.1|198558_198933_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY17403.1|198992_201857_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY17404.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17405.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
AZY17406.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17407.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17408.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY17409.1|207168_208218_-	cyclase	NA	NA	NA	NA	NA
AZY17410.1|208214_209039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY17411.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
AZY17412.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY17413.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY17414.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY20631.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17415.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY17416.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY17417.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY17418.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY17419.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY17420.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY17421.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY17422.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY17423.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	233334	286921	4101116	protease,transposase,tRNA	Bacillus_phage(28.57%)	47	NA	NA
AZY17431.1|233334_234285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17432.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17433.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17434.1|236367_237165_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY17435.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY17436.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17437.1|240333_241377_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17438.1|241547_243650_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17439.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17440.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY17441.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY17442.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY17443.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY17444.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY17445.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY17446.1|253596_254235_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20632.1|254377_255622_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY17447.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY17448.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY17449.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
AZY17450.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY17451.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17452.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY17453.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
AZY17454.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17455.1|265570_266521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17456.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17457.1|267709_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY17458.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY17459.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY17460.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY17461.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY17462.1|274097_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY17463.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY17464.1|277137_278088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17465.1|278074_278290_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17466.1|278365_278527_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY17467.1|278534_278675_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17468.1|279193_279643_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY17469.1|279652_280264_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY17470.1|280422_281277_-	cytochrome c1	NA	NA	NA	NA	NA
AZY17471.1|281296_282679_-	cytochrome b	NA	NA	NA	NA	NA
AZY17472.1|282743_283385_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY17473.1|283524_283983_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY17474.1|284007_284784_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY20633.1|284837_285974_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY17475.1|285970_286921_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	354914	414382	4101116	transposase,tRNA	Streptococcus_phage(50.0%)	56	NA	NA
AZY17538.1|354914_355865_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17539.1|355976_356699_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17540.1|356797_357541_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY17541.1|357771_359280_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17542.1|359399_360131_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
AZY17543.1|360175_361636_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY17544.1|361660_362140_+	heme-binding protein	NA	NA	NA	NA	NA
AZY17545.1|362158_363169_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY17546.1|363383_364124_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17547.1|364315_365341_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17548.1|365300_366251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17549.1|367299_367938_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
AZY17550.1|367974_369369_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AZY17551.1|369740_370529_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
AZY17552.1|370633_371341_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY17553.1|371454_372909_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	tRNA	NA	NA	NA	NA
AZY17554.1|372911_374450_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	tRNA	NA	NA	NA	NA
AZY17555.1|374452_374761_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZY17556.1|374991_376035_+	rod shape-determining protein	NA	NA	NA	NA	NA
AZY17557.1|376123_377008_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AZY17558.1|376994_377558_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AZY17559.1|377571_379524_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZY17560.1|379520_380657_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
AZY17561.1|380682_381738_-	lactate dehydrogenase	NA	NA	NA	NA	NA
AZY17562.1|381748_383242_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17563.1|383454_384030_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
AZY17564.1|384079_384826_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
AZY17565.1|384825_385728_-	acetylglutamate kinase	NA	NA	NA	NA	NA
AZY17566.1|385989_386778_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17567.1|386918_387410_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AZY17568.1|387406_388150_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY17569.1|388146_388749_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
AZY17570.1|388748_389225_-	YraN family protein	NA	NA	NA	NA	NA
AZY17571.1|389349_390288_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
AZY17572.1|390284_390857_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
AZY17573.1|390853_391804_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17574.1|391902_392853_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17575.1|392989_393907_+	reductase	NA	NA	NA	NA	NA
AZY17576.1|393903_394152_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY17577.1|394148_395354_+	CoA transferase	NA	NA	NA	NA	NA
AZY17578.1|395426_396422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17579.1|396444_397665_-	CoA transferase	NA	NA	NA	NA	NA
AZY17580.1|397661_398306_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17581.1|400036_400846_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20639.1|401063_402104_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY17582.1|402202_403186_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17583.1|403112_403814_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17584.1|403862_404633_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY17585.1|404629_405871_-	CoA transferase	NA	NA	NA	NA	NA
AZY17586.1|405975_407682_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY17587.1|407678_408575_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17588.1|408615_410205_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY17589.1|410254_411247_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17590.1|411315_411915_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20640.1|412375_413353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17591.1|413431_414382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	467072	587440	4101116	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
AZY17629.1|467072_469448_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZY17630.1|469546_470497_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17631.1|470595_471546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17632.1|472268_473543_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZY17633.1|473629_474712_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZY17634.1|474722_475535_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZY17635.1|475571_475898_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZY17636.1|475902_476463_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZY17637.1|476703_477696_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17638.1|477714_478710_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17639.1|478725_480102_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZY17640.1|480094_482476_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY20648.1|482492_482882_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20649.1|483008_483239_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17641.1|483343_484294_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17642.1|484392_485343_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY17643.1|485339_486212_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY17644.1|487142_488429_+	cytochrome c	NA	NA	NA	NA	NA
AZY17645.1|488482_489409_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY17646.1|489427_489892_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY17647.1|490734_491526_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY17648.1|491557_492178_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY17649.1|492174_492804_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY17650.1|492816_493425_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY17651.1|493421_494411_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY17652.1|494516_495731_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY17653.1|497682_498633_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20650.1|500066_501353_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17654.1|501518_501827_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY17655.1|501827_502493_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY17656.1|502533_504324_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY17657.1|504436_505297_+	endonuclease	NA	NA	NA	NA	NA
AZY17658.1|505293_506499_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY17659.1|506495_507380_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY17660.1|508896_509331_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY17661.1|509293_510292_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17662.1|510403_511549_+	transporter	NA	NA	NA	NA	NA
AZY17663.1|511623_512952_+	amidase	NA	NA	NA	NA	NA
AZY17664.1|512985_513576_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY17665.1|513865_514660_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17666.1|515829_516564_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY20651.1|516570_517398_-	copper resistance protein B	NA	NA	NA	NA	NA
AZY17667.1|517444_519220_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY17668.1|519262_519760_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17669.1|520056_521007_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17670.1|521105_522056_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17671.1|522396_523347_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17672.1|525670_526819_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY17673.1|526863_527526_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17674.1|527639_528632_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY17675.1|528628_529366_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY17676.1|529445_530267_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY17677.1|530355_531219_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY17678.1|531345_531582_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17679.1|533556_534591_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY17680.1|534649_535627_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY17681.1|535634_536555_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY17682.1|536551_538252_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY17683.1|538254_539160_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY17684.1|539203_540337_+	peptidase	NA	NA	NA	NA	NA
AZY17685.1|540465_541416_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17686.1|541514_543584_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZY17687.1|543626_545729_-	primosomal protein N'	NA	NA	NA	NA	NA
AZY17688.1|546035_547112_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZY20652.1|547187_548072_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17689.1|548254_548677_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZY17690.1|548686_550087_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZY17691.1|550129_551035_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZY17692.1|551133_552675_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZY17693.1|552709_553249_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZY17694.1|553261_553732_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZY17695.1|553869_554112_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZY17696.1|554228_555110_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZY20653.1|555182_555503_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY17697.1|556354_557305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17698.1|558628_559405_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY17699.1|559439_561212_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY17700.1|561213_562116_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY17701.1|562240_562600_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY17702.1|562631_563594_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY17703.1|563692_564643_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17704.1|564655_565591_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY17705.1|565650_566490_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY17706.1|566486_567656_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY17707.1|567652_568942_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17708.1|568984_569359_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY17709.1|569464_570202_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY17710.1|570209_570914_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY17711.1|571177_572698_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY17712.1|572753_573317_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY17713.1|573335_574367_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY17714.1|574363_575152_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY17715.1|575327_576317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17716.1|578072_579023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17717.1|580245_581148_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17718.1|581149_582004_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY17719.1|582050_583160_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY17720.1|583170_583689_-	flavin reductase	NA	NA	NA	NA	NA
AZY17721.1|583718_584351_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY17722.1|584422_585082_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY17723.1|585078_586299_-	MFS transporter	NA	NA	NA	NA	NA
AZY17724.1|586567_587440_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	591854	655687	4101116	transposase,tRNA	Pandoravirus(12.5%)	49	NA	NA
AZY20655.1|591854_592871_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY17728.1|593142_593769_-	aminotransferase	NA	NA	NA	NA	NA
AZY17729.1|593824_594952_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY17730.1|594957_600675_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY17731.1|600958_601174_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17732.1|601242_602187_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY17733.1|602375_603311_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY17734.1|603428_605000_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17735.1|605079_606288_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY17736.1|606785_607703_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY17737.1|610063_610285_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20656.1|610615_611632_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY17738.1|611716_611968_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY17739.1|611971_612787_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY17740.1|612899_613778_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY17741.1|613889_615653_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY17742.1|615768_617109_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY17743.1|618178_619603_-	ATP-binding protein	NA	NA	NA	NA	NA
AZY17744.1|619602_620304_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZY17745.1|621808_622759_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17746.1|622827_623826_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17747.1|623830_624511_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY17748.1|624648_625041_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY20657.1|625148_626165_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY17749.1|626404_627190_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY17750.1|627284_628694_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY17751.1|628704_629505_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY17752.1|629525_630296_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY17753.1|630338_630806_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY17754.1|630802_631753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17755.1|633701_634580_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY17756.1|635506_638485_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17757.1|638483_638852_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17758.1|638838_639789_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17759.1|639785_640874_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17760.1|640909_641773_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY17761.1|642912_643302_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY17762.1|643305_644088_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY17763.1|644121_644874_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY17764.1|645182_646322_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17765.1|646318_647110_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY17766.1|647106_647856_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY17767.1|647852_648725_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY17768.1|648724_649726_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY17769.1|649722_650886_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY17770.1|650911_651595_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17771.1|651548_652883_+	CoA ligase	NA	NA	NA	NA	NA
AZY17772.1|652875_653970_+	CoA transferase	NA	NA	NA	NA	NA
AZY20658.1|654736_655687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	724435	756244	4101116	protease,integrase,tRNA,transposase	Pseudomonas_phage(33.33%)	23	721734:721752	741622:741640
721734:721752	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY17826.1|724435_725083_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY17827.1|725079_725862_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY17828.1|725934_727026_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY17829.1|727305_728433_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY17830.1|728774_729821_+	Fic family protein	NA	NA	NA	NA	NA
AZY20661.1|729831_729972_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY17831.1|729968_733088_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY17832.1|733089_736041_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY17833.1|736056_737268_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY17834.1|737264_737465_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17835.1|737451_738402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17836.1|738418_738913_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY17837.1|738916_739174_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17838.1|739198_740629_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY17839.1|740710_740995_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZY17840.1|741778_742729_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
741622:741640	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY17841.1|743147_745712_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY17842.1|745756_747610_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17843.1|747942_749514_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY17844.1|750955_751906_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17845.1|751991_752732_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17846.1|752958_753906_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17847.1|755293_756244_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	1006194	1100232	4101116	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY18046.1|1006194_1007145_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18047.1|1007247_1007910_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18048.1|1008012_1008423_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18049.1|1008527_1009529_+	amidase	NA	NA	NA	NA	NA
AZY18050.1|1009531_1010728_+	CoA transferase	NA	NA	NA	NA	NA
AZY18051.1|1010748_1011552_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY18052.1|1011632_1011929_+	histidine kinase	NA	NA	NA	NA	NA
AZY18053.1|1011959_1012523_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY20680.1|1012563_1013421_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY18054.1|1013428_1014178_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY18055.1|1014199_1015072_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18056.1|1015100_1015880_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY18057.1|1015913_1016711_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18058.1|1018162_1019335_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY18059.1|1019365_1019758_+	RidA family protein	NA	NA	NA	NA	NA
AZY18060.1|1019751_1020612_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY18061.1|1020615_1021578_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY20681.1|1022354_1023044_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY18062.1|1023904_1024855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18063.1|1025204_1026074_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18064.1|1026144_1026840_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY18065.1|1026829_1027339_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY18066.1|1027335_1028556_+	MFS transporter	NA	NA	NA	NA	NA
AZY18067.1|1028503_1029406_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18068.1|1030292_1031579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18069.1|1031617_1032991_+	amidase	NA	NA	NA	NA	NA
AZY18070.1|1033029_1033731_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY18071.1|1034029_1035019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18072.1|1035119_1035581_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY18073.1|1035596_1036145_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY18074.1|1036286_1037762_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY18075.1|1037867_1038959_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY18076.1|1038962_1039745_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY18077.1|1039754_1040543_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY18078.1|1041669_1042104_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY18079.1|1042100_1043111_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY18080.1|1043154_1044081_-	VOC family protein	NA	NA	NA	NA	NA
AZY18081.1|1044367_1044736_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY20682.1|1044952_1045903_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20683.1|1045884_1048374_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY18082.1|1048422_1049115_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY18083.1|1049187_1050387_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY18084.1|1050404_1051310_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18085.1|1051425_1052355_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY18086.1|1052380_1053727_+	MFS transporter	NA	NA	NA	NA	NA
AZY20684.1|1053754_1054504_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY18087.1|1054517_1055300_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY18088.1|1055492_1056443_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18089.1|1056504_1057650_-	porin	NA	NA	NA	NA	NA
AZY18090.1|1058126_1058963_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY18091.1|1059032_1059998_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18092.1|1059994_1060945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18093.1|1060931_1061126_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18094.1|1061330_1061873_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18095.1|1062908_1063859_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18096.1|1064100_1064469_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18097.1|1064514_1065639_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20685.1|1066773_1067514_-	oxidoreductase	NA	NA	NA	NA	NA
AZY18098.1|1067617_1068238_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18099.1|1068341_1069292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18100.1|1069288_1071397_-	AsmA family protein	NA	NA	NA	NA	NA
AZY18101.1|1071541_1072201_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY18102.1|1072232_1072697_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY18103.1|1072972_1073158_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18104.1|1073209_1073962_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY18105.1|1073968_1075231_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY18106.1|1075272_1076511_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18107.1|1077588_1078716_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY18108.1|1078726_1079554_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY18109.1|1079540_1080407_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY18110.1|1081773_1082178_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18111.1|1082269_1083220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20686.1|1083589_1084501_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18112.1|1084515_1085226_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18113.1|1085222_1086467_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY18114.1|1086468_1086903_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY18115.1|1086931_1087237_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY18116.1|1087130_1087349_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18117.1|1087335_1088286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18118.1|1088342_1089491_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY18119.1|1089571_1090522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18120.1|1091053_1091851_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY18121.1|1091898_1092552_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY18122.1|1092508_1093597_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY18123.1|1093761_1095987_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY18124.1|1098264_1099161_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY18125.1|1099049_1099295_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18126.1|1099281_1100232_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	1130618	1201589	4101116	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY18155.1|1130618_1131569_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18156.1|1131625_1132738_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY18157.1|1135121_1136072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18158.1|1136662_1137439_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY18159.1|1137556_1137820_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY18160.1|1137920_1138925_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY18161.1|1139125_1140727_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY18162.1|1140752_1141511_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY18163.1|1141602_1142259_-	adenylate kinase	NA	NA	NA	NA	NA
AZY18164.1|1142349_1143114_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY18165.1|1143123_1143312_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18166.1|1143367_1144411_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY18167.1|1144407_1144821_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY18168.1|1144817_1145438_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY18169.1|1145718_1146669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18170.1|1146836_1148228_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY18171.1|1148300_1148879_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY18172.1|1148995_1150393_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY18173.1|1150508_1151714_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY18174.1|1151813_1152332_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY18175.1|1152426_1152672_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY18176.1|1152899_1153214_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY18177.1|1153303_1158493_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY20688.1|1158489_1160658_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY18178.1|1160677_1163029_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY18179.1|1163033_1164353_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY18180.1|1164371_1166045_+	MCE family protein	NA	NA	NA	NA	NA
AZY18181.1|1166049_1166718_+	lipoprotein	NA	NA	NA	NA	NA
AZY18182.1|1166874_1170696_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY18183.1|1171026_1171977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18184.1|1171998_1173144_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY18185.1|1173292_1174222_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY18186.1|1174218_1175307_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY18187.1|1175303_1176107_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY18188.1|1176103_1176835_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY18189.1|1176892_1178182_-	MFS transporter	NA	NA	NA	NA	NA
AZY18190.1|1178278_1178881_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18191.1|1183434_1183773_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY18192.1|1184441_1184747_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18193.1|1186453_1187404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18194.1|1187400_1188732_-	MFS transporter	NA	NA	NA	NA	NA
AZY18195.1|1189971_1191993_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY18196.1|1191985_1192627_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY18197.1|1192623_1193031_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY18198.1|1193027_1193828_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY18199.1|1193902_1194607_+	oxidoreductase	NA	NA	NA	NA	NA
AZY18200.1|1194638_1195433_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY18201.1|1195429_1196380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18202.1|1196478_1197429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18203.1|1197527_1197962_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY18204.1|1198044_1200381_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY20689.1|1200572_1201589_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	1301805	1359016	4101116	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY18278.1|1301805_1302756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18279.1|1306502_1307114_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY18280.1|1307336_1308797_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY18281.1|1308893_1310486_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY18282.1|1310472_1310751_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18283.1|1310809_1311097_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY18284.1|1311098_1312439_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY18285.1|1312534_1313224_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18286.1|1313236_1314667_+	MFS transporter	NA	NA	NA	NA	NA
AZY18287.1|1316391_1317213_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18288.1|1317223_1318795_+	amidohydrolase	NA	NA	NA	NA	NA
AZY18289.1|1318823_1319801_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY18290.1|1319827_1320631_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY18291.1|1320627_1321422_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY18292.1|1321429_1322665_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY18293.1|1322657_1323092_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY18294.1|1323841_1324792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18295.1|1325413_1327141_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY18296.1|1327252_1328611_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY18297.1|1328731_1328917_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18298.1|1328903_1329854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18299.1|1329894_1330965_+	FUSC family protein	NA	NA	NA	NA	NA
AZY20695.1|1330987_1331866_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY18300.1|1332037_1333009_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY18301.1|1333171_1334014_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18302.1|1334175_1334856_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY18303.1|1334849_1336019_+	amine oxidase	NA	NA	NA	NA	NA
AZY18304.1|1336015_1337047_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY18305.1|1337090_1338332_+	MFS transporter	NA	NA	NA	NA	NA
AZY18306.1|1338366_1339899_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY18307.1|1339979_1340603_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY18308.1|1340633_1341245_+	LysE family translocator	NA	NA	NA	NA	NA
AZY18309.1|1341280_1341751_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY18310.1|1342182_1343187_+	peptidase M20	NA	NA	NA	NA	NA
AZY18311.1|1343223_1344738_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY18312.1|1344741_1345701_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY18313.1|1345729_1346533_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY18314.1|1346534_1348169_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY18315.1|1348252_1349314_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY18316.1|1349512_1349782_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18317.1|1349785_1350310_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY18318.1|1350725_1351676_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18319.1|1351672_1352743_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY18320.1|1352815_1353454_+	DedA family protein	NA	NA	NA	NA	NA
AZY18321.1|1353748_1353976_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY18322.1|1354098_1354812_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY18323.1|1355056_1356007_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18324.1|1356110_1356392_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18325.1|1356506_1357955_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY18326.1|1358065_1359016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	1449248	1503476	4101116	transposase,tRNA	Salmonella_phage(22.22%)	46	NA	NA
AZY18408.1|1449248_1450199_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18409.1|1450365_1450719_+	cytochrome C	NA	NA	NA	NA	NA
AZY18410.1|1450731_1451094_+	cytochrome	NA	NA	NA	NA	NA
AZY18411.1|1451135_1451561_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY18412.1|1451763_1453020_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY18413.1|1453218_1454199_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18414.1|1454348_1455590_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18415.1|1455688_1456639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18416.1|1456647_1457343_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY18417.1|1460164_1460764_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY18418.1|1460774_1462940_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY18419.1|1462963_1464748_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY18420.1|1464747_1464837_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY18421.1|1465531_1465804_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY18422.1|1465803_1467870_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY18423.1|1467866_1468817_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18424.1|1468915_1469866_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18425.1|1469981_1470314_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY18426.1|1470310_1470997_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY18427.1|1470983_1471943_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY20703.1|1471984_1474345_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY18428.1|1474344_1474977_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY18429.1|1475039_1476419_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY18430.1|1476465_1477821_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY18431.1|1478099_1478348_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18432.1|1478535_1478853_-	virulence factor	NA	NA	NA	NA	NA
AZY18433.1|1479125_1479641_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY18434.1|1479734_1479896_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18435.1|1479911_1480667_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY18436.1|1481005_1481212_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18437.1|1481219_1481879_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY18438.1|1482173_1484378_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY18439.1|1484488_1485712_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY18440.1|1485834_1486809_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY18441.1|1486876_1488070_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY18442.1|1488084_1488885_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY18443.1|1488881_1490738_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY18444.1|1490734_1491340_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY18445.1|1491358_1492744_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY18446.1|1493469_1494696_+	transporter	NA	NA	NA	NA	NA
AZY18447.1|1494784_1495567_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY18448.1|1495665_1496616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18449.1|1496642_1497416_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY18450.1|1497427_1498669_+	MFS transporter	NA	NA	NA	NA	NA
AZY18451.1|1501431_1502529_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY18452.1|1502525_1503476_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	1545325	1604188	4101116	protease,transposase,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZY20704.1|1545325_1545814_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY18498.1|1545931_1546510_+|protease	protease	protease	NA	NA	NA	NA
AZY18499.1|1546582_1546984_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY18500.1|1547082_1548033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18501.1|1548039_1549152_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY18502.1|1549838_1551041_+	MFS transporter	NA	NA	NA	NA	NA
AZY18503.1|1551244_1553905_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18504.1|1553917_1557322_+	nuclease	NA	NA	NA	NA	NA
AZY18505.1|1557989_1560215_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY18506.1|1560261_1560588_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY18507.1|1560638_1561247_+	recombination protein RecR	NA	NA	NA	NA	NA
AZY18508.1|1561345_1562296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18509.1|1562365_1563130_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY18510.1|1563126_1563726_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20705.1|1563829_1564675_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY18511.1|1564740_1565367_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY18512.1|1565363_1566314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18513.1|1566300_1566489_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18514.1|1566412_1567534_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY18515.1|1567514_1568516_-	aminopeptidase	NA	NA	NA	NA	NA
AZY18516.1|1568621_1570133_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY18517.1|1570129_1571434_-	peptidase	NA	NA	NA	NA	NA
AZY18518.1|1571545_1572106_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY18519.1|1572373_1572928_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY18520.1|1573383_1573599_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY20706.1|1573853_1576451_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY18521.1|1576447_1577635_+	cupin	NA	NA	NA	NA	NA
AZY18522.1|1578293_1578908_+	fimbrial protein	NA	NA	NA	NA	NA
AZY18523.1|1578996_1580124_-	lipoprotein	NA	NA	NA	NA	NA
AZY18524.1|1580135_1581041_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY18525.1|1581933_1582884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18526.1|1583065_1583818_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY18527.1|1583886_1584546_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY18528.1|1584542_1585271_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY18529.1|1585283_1587563_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY18530.1|1587587_1587791_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY18531.1|1587832_1588480_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY18532.1|1588600_1589518_-	cytochrome C	NA	NA	NA	NA	NA
AZY18533.1|1589514_1590228_-	cytochrome C	NA	NA	NA	NA	NA
AZY18534.1|1590465_1591236_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY18535.1|1591240_1591840_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY18536.1|1592084_1593575_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZY18537.1|1593633_1593918_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY18538.1|1593914_1594043_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18539.1|1594055_1594211_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18540.1|1594483_1595410_-	YicC family protein	NA	NA	NA	NA	NA
AZY18541.1|1595546_1596287_+	ribonuclease PH	NA	NA	NA	NA	NA
AZY18542.1|1596453_1597830_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY18543.1|1598011_1598917_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY18544.1|1598951_1600691_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY18545.1|1600568_1602371_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY18546.1|1602488_1603139_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY18547.1|1603237_1604188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	1649360	1704951	4101116	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZY18578.1|1649360_1650311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18579.1|1650369_1651143_+	oxidoreductase	NA	NA	NA	NA	NA
AZY18580.1|1651135_1652692_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY18581.1|1652688_1653639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18582.1|1654965_1655568_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18583.1|1655807_1656509_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY18584.1|1656502_1657285_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY18585.1|1657469_1658420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18586.1|1658518_1659256_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY18587.1|1659445_1660204_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY18588.1|1660250_1661240_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18589.1|1661417_1662386_-	transporter	NA	NA	NA	NA	NA
AZY18590.1|1663925_1664894_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY18591.1|1664902_1665844_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY18592.1|1666317_1667328_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20710.1|1667318_1668833_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY18593.1|1668829_1670176_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20711.1|1670178_1671213_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY18594.1|1671262_1672888_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY18595.1|1673440_1674391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18596.1|1674495_1675443_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20712.1|1675496_1677311_-	histidine kinase	NA	NA	NA	NA	NA
AZY18597.1|1677303_1677978_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY18598.1|1678107_1681182_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZY18599.1|1681195_1681495_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY20713.1|1681809_1682433_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY18600.1|1682676_1683546_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZY18601.1|1683523_1684468_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20714.1|1684553_1685525_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20715.1|1685592_1686366_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY18602.1|1686362_1687559_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY18603.1|1687589_1688540_-	hydrolase	NA	NA	NA	NA	NA
AZY18604.1|1688761_1689451_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY18605.1|1689515_1690271_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY18606.1|1690322_1691315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18607.1|1691324_1692278_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18608.1|1692393_1693356_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18609.1|1694757_1695186_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18610.1|1695182_1696133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20716.1|1696426_1697149_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY18611.1|1697587_1698775_-	MFS transporter	NA	NA	NA	NA	NA
AZY18612.1|1698778_1699159_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18613.1|1700878_1701850_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18614.1|1701863_1702577_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY18615.1|1702581_1703499_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18616.1|1703605_1703902_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18617.1|1704000_1704951_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	1986441	2039680	4101116	transposase	Erysipelothrix_phage(33.33%)	47	NA	NA
AZY18827.1|1986441_1987392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18828.1|1988262_1989135_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY18829.1|1989212_1990352_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY18830.1|1990701_1991967_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY18831.1|1991972_1992500_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY18832.1|1992504_1993323_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY18833.1|1993322_1994045_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY18834.1|1994066_1994381_+	ferredoxin	NA	NA	NA	NA	NA
AZY18835.1|1994377_1995547_+	CoA transferase	NA	NA	NA	NA	NA
AZY18836.1|1995577_1996453_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY18837.1|1996449_1997769_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY18838.1|1997841_1999038_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY18839.1|1999048_2000536_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18840.1|2003130_2004030_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18841.1|2004167_2005133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18842.1|2005231_2006182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18843.1|2006225_2006417_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18844.1|2007349_2007652_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZY18845.1|2007811_2008216_+	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZY18846.1|2008208_2009435_+	NnrS family protein	NA	NA	NA	NA	NA
AZY18847.1|2009431_2009878_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18848.1|2009947_2010730_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZY18849.1|2010771_2012277_+	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZY20728.1|2012562_2013357_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY18850.1|2014833_2015655_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY18851.1|2015673_2016528_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZY18852.1|2016531_2017503_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18853.1|2017577_2018216_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18854.1|2018187_2018364_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18855.1|2018849_2019800_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18856.1|2020937_2021234_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18857.1|2021408_2022761_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY20729.1|2022903_2023920_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY20730.1|2025899_2026913_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY18858.1|2026999_2027905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18859.1|2028061_2028406_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18860.1|2028563_2029022_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY18861.1|2029035_2031252_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY18862.1|2031248_2032310_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18863.1|2032338_2033313_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY18864.1|2033264_2034083_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY18865.1|2034095_2034704_-	peptidase S16	NA	NA	NA	NA	NA
AZY18866.1|2034878_2035274_+	VOC family protein	NA	NA	NA	NA	NA
AZY18867.1|2035292_2036732_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY18868.1|2036760_2037108_+	GFA family protein	NA	NA	NA	NA	NA
AZY18869.1|2037126_2038077_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18870.1|2038729_2039680_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	2060373	2101010	4101116	protease,transposase,tRNA	Klosneuvirus(14.29%)	40	NA	NA
AZY18888.1|2060373_2061324_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18889.1|2062296_2062656_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY18890.1|2062643_2064080_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY18891.1|2064076_2064730_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY18892.1|2064726_2065926_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY18893.1|2066023_2067298_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY18894.1|2067294_2068245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18895.1|2068411_2069386_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20733.1|2069382_2069526_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY18896.1|2071147_2071810_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY18897.1|2071812_2071989_+	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY18898.1|2071985_2072924_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY18899.1|2073015_2074506_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY18900.1|2074591_2074744_+	lipoprotein	NA	NA	NA	NA	NA
AZY18901.1|2074757_2074997_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18902.1|2075092_2075836_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY18903.1|2075844_2076369_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY18904.1|2076467_2077391_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY18905.1|2077387_2078149_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY18906.1|2078164_2079250_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZY18907.1|2079262_2079463_+	hypothetical protein	NA	NA	NA	NA	NA
AZY18908.1|2079449_2080400_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18909.1|2080498_2081449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18910.1|2081408_2081822_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY18911.1|2082106_2082406_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20734.1|2082815_2084984_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY18912.1|2085783_2087814_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY18913.1|2087833_2088046_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY18914.1|2088323_2088863_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY18915.1|2088976_2090284_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY18916.1|2090348_2091506_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY18917.1|2091689_2092589_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY18918.1|2092607_2093912_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY18919.1|2093877_2094984_-	GTPase HflX	NA	NA	NA	NA	NA
AZY18920.1|2095071_2095308_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY18921.1|2095446_2096517_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY18922.1|2096520_2097876_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY18923.1|2097902_2099063_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY18924.1|2099065_2099704_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18925.1|2099705_2101010_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 17
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	2146874	2212422	4101116	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	57	NA	NA
AZY18961.1|2146874_2147825_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18962.1|2148025_2148835_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY18963.1|2149905_2150799_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY18964.1|2150923_2151118_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY18965.1|2151117_2151459_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY18966.1|2151468_2153331_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY18967.1|2153460_2153973_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY18968.1|2153975_2154299_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY18969.1|2154300_2154711_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY18970.1|2154748_2155960_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY18971.1|2155977_2156490_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY18972.1|2156705_2157197_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY18973.1|2157449_2159486_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY18974.1|2159563_2160766_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY18975.1|2160816_2161545_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY18976.1|2163102_2164053_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY18977.1|2164623_2164836_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18978.1|2164853_2165585_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18979.1|2165619_2166261_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY18980.1|2166253_2166970_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY18981.1|2169134_2169911_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY18982.1|2169932_2171090_-	thiolase	NA	NA	NA	NA	NA
AZY18983.1|2171086_2171518_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18984.1|2171514_2172318_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY18985.1|2172331_2172787_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY18986.1|2172799_2173771_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY18987.1|2173836_2175060_-	CoA transferase	NA	NA	NA	NA	NA
AZY18988.1|2175287_2176238_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY18989.1|2176361_2178815_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY18990.1|2179003_2180308_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY18991.1|2180412_2181066_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY18992.1|2181068_2182379_-	trigger factor	NA	NA	NA	NA	NA
AZY18993.1|2182557_2183136_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY18994.1|2183247_2183448_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY18995.1|2183793_2184360_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY18996.1|2184443_2184647_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY18997.1|2184953_2185274_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18998.1|2185315_2185597_-	hypothetical protein	NA	NA	NA	NA	NA
AZY18999.1|2185671_2186928_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY19000.1|2187310_2187640_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY19001.1|2189210_2190032_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY19002.1|2190031_2191171_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY19003.1|2191177_2192074_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY19004.1|2192070_2193996_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY19005.1|2194355_2196968_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY19006.1|2197020_2199321_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY19007.1|2199317_2200526_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY19008.1|2200787_2201162_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19009.1|2201158_2202109_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19010.1|2202207_2204202_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY19011.1|2204261_2205227_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY19012.1|2205216_2208078_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY19013.1|2208080_2208587_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY19014.1|2208691_2209900_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY19015.1|2209901_2210840_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19016.1|2211001_2211475_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY19017.1|2211471_2212422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	2605538	2672038	4101116	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY19350.1|2605538_2606489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19351.1|2606858_2607431_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY19352.1|2607433_2608444_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY19353.1|2608436_2608937_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY19354.1|2608947_2609289_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY19355.1|2609300_2610092_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY19356.1|2610108_2610378_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY19357.1|2610400_2611189_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY20754.1|2611235_2612252_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY19358.1|2612468_2613911_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY19359.1|2614089_2615709_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY19360.1|2615829_2617650_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY19361.1|2617728_2619261_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY19362.1|2619294_2620941_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY19363.1|2621010_2622033_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY19364.1|2622050_2623184_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZY19365.1|2623186_2623876_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY19366.1|2623875_2624661_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY19367.1|2624704_2625469_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY19368.1|2625507_2626929_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY19369.1|2626994_2627699_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY19370.1|2627746_2628166_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY19371.1|2628178_2628586_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY20755.1|2628769_2629480_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY19372.1|2629606_2629897_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY19373.1|2629914_2630397_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY19374.1|2634902_2636057_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY20756.1|2636362_2637379_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY19375.1|2637625_2638414_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY19376.1|2638480_2639161_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY19377.1|2639157_2639928_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY19378.1|2640026_2640977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19379.1|2641032_2641950_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY19380.1|2641960_2643139_-	mandelate racemase	NA	NA	NA	NA	NA
AZY19381.1|2643158_2644154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY19382.1|2645742_2646351_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY19383.1|2646338_2647379_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY19384.1|2647396_2648359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY19385.1|2648355_2649549_-	CoA transferase	NA	NA	NA	NA	NA
AZY19386.1|2649545_2650343_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY19387.1|2650368_2651355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY19388.1|2651373_2653413_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY20757.1|2653614_2654295_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19389.1|2654308_2655220_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY19390.1|2655216_2655795_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY19391.1|2655933_2656839_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19392.1|2656846_2660266_+	nuclease	NA	NA	NA	NA	NA
AZY19393.1|2660253_2662854_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY19394.1|2663809_2664442_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19395.1|2664835_2665594_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19396.1|2665590_2666793_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY19397.1|2666980_2667931_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19398.1|2668838_2669984_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY20758.1|2670003_2670726_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY19399.1|2670842_2671022_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19400.1|2671087_2672038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	2876150	2957427	4101116	transposase,tRNA	Planktothrix_phage(16.67%)	59	NA	NA
AZY19564.1|2876150_2877101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19565.1|2877097_2878000_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19566.1|2878087_2878846_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY19567.1|2878858_2880007_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY19568.1|2880047_2881475_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY19569.1|2881704_2882919_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY19570.1|2882964_2885835_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY19571.1|2888245_2888734_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY19572.1|2888859_2891556_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY19573.1|2891710_2893993_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY19574.1|2894157_2894790_+	fimbrial protein	NA	NA	NA	NA	NA
AZY19575.1|2894888_2895839_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY19576.1|2895885_2896440_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY19577.1|2896507_2897353_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY19578.1|2897422_2898391_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY19579.1|2898390_2900187_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19580.1|2902086_2906013_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY19581.1|2906303_2906480_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19582.1|2906748_2909979_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY19583.1|2910260_2911088_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY19584.1|2911121_2911817_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY19585.1|2911809_2913090_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY19586.1|2913099_2914077_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20774.1|2914058_2915759_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZY19587.1|2915861_2916965_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY19588.1|2916995_2917751_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY19589.1|2917757_2919278_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY19590.1|2919320_2919623_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19591.1|2919619_2920252_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19592.1|2920330_2922196_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY19593.1|2922192_2923008_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY19594.1|2923015_2924131_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY19595.1|2925035_2925914_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY19596.1|2925913_2926738_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY19597.1|2926905_2927856_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19598.1|2928038_2930918_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY19599.1|2930899_2931676_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY19600.1|2931768_2933232_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY19601.1|2933228_2933600_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY19602.1|2933617_2934931_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19603.1|2934967_2935426_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY19604.1|2935538_2936489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19605.1|2936485_2937499_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY19606.1|2937638_2938625_+	homoserine kinase	NA	NA	NA	NA	NA
AZY19607.1|2938668_2939469_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19608.1|2940271_2941222_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19609.1|2941373_2941976_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19610.1|2941994_2942627_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY19611.1|2942864_2944751_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY19612.1|2944769_2945612_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY19613.1|2945608_2946967_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY19614.1|2947187_2947982_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY19615.1|2948212_2949706_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY19616.1|2949941_2952023_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY19617.1|2952217_2953258_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY19618.1|2953392_2954409_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY19619.1|2954430_2955288_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY20775.1|2955332_2956109_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY19620.1|2956476_2957427_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	2966495	3015433	4101116	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY19628.1|2966495_2966909_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY19629.1|2966949_2967267_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY19630.1|2967351_2968068_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20776.1|2968331_2969753_+	siroheme synthase	NA	NA	NA	NA	NA
AZY19631.1|2969819_2972567_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY20777.1|2972899_2973916_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY20778.1|2974251_2974893_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY19632.1|2974983_2976420_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY19633.1|2976577_2977651_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY19634.1|2977647_2978784_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY19635.1|2978928_2979273_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY19636.1|2979339_2981220_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY19637.1|2981269_2982205_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY20779.1|2982537_2983554_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY19638.1|2984491_2985919_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY19639.1|2985915_2986938_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY19640.1|2986927_2987401_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY19641.1|2987526_2988429_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZY19642.1|2988425_2990069_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY20780.1|2990065_2991073_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY20781.1|2991903_2992920_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY19643.1|2993019_2993652_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY19644.1|2993660_2994050_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY19645.1|2994102_2995155_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY19646.1|2996018_2997725_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY19647.1|2997798_2998299_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY19648.1|2998313_3000371_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY19649.1|3000397_3000691_-	response regulator	NA	NA	NA	NA	NA
AZY19650.1|3000792_3001740_-	motility protein MotB	NA	NA	NA	NA	NA
AZY19651.1|3001752_3002628_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY19652.1|3002748_3003309_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY19653.1|3003343_3003667_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY19654.1|3004102_3004840_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY19655.1|3005138_3006089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19656.1|3006332_3006596_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY19657.1|3006669_3006951_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19658.1|3006967_3007828_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY19659.1|3007824_3008160_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19660.1|3008213_3008864_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY19661.1|3010544_3011489_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19662.1|3011534_3011852_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19663.1|3011854_3012793_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY19664.1|3012970_3013456_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY19665.1|3013474_3014023_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY19666.1|3014299_3015433_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	3027040	3099534	4101116	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY19675.1|3027040_3027991_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19676.1|3028033_3029209_+	flagellin FliC	NA	NA	NA	NA	NA
AZY19677.1|3029430_3031221_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY19678.1|3031233_3032895_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY19679.1|3032907_3035613_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY19680.1|3035905_3037660_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY19681.1|3037656_3038283_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY19682.1|3038279_3039131_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY19683.1|3039206_3041321_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY19684.1|3041471_3042122_+	SCO family protein	NA	NA	NA	NA	NA
AZY19685.1|3042267_3042519_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY19686.1|3042588_3043971_-	multidrug transporter	NA	NA	NA	NA	NA
AZY19687.1|3043967_3047147_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY20783.1|3047954_3048872_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19688.1|3048923_3049655_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY19689.1|3049714_3050287_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY20784.1|3051795_3052812_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY19690.1|3052949_3053999_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY19691.1|3054103_3055054_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19692.1|3055149_3055875_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY19693.1|3056085_3056466_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY19694.1|3056771_3057644_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY19695.1|3057651_3058032_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19696.1|3058185_3059460_-	radical SAM protein	NA	NA	NA	NA	NA
AZY20785.1|3060947_3061856_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY19697.1|3062653_3063718_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY19698.1|3065554_3066589_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY19699.1|3066778_3067420_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY19700.1|3067502_3069329_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY19701.1|3069572_3070502_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY19702.1|3070501_3071251_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY19703.1|3071322_3072237_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY19704.1|3072256_3073402_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY19705.1|3073462_3074374_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY19706.1|3074454_3075405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19707.1|3075503_3076088_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY19708.1|3076122_3077112_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY19709.1|3077108_3078050_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY19710.1|3078046_3079267_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY19711.1|3079309_3079624_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY19712.1|3079815_3080175_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY19713.1|3080176_3081907_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY19714.1|3082079_3082751_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY19715.1|3082765_3084094_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY19716.1|3084090_3084990_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY19717.1|3085076_3086162_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY19718.1|3086154_3087288_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY19719.1|3087287_3089969_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY19720.1|3090339_3090921_+	OmpA family protein	NA	NA	NA	NA	NA
AZY19721.1|3090998_3091772_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY19722.1|3091768_3092446_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY19723.1|3092661_3093843_+	MFS transporter	NA	NA	NA	NA	NA
AZY19724.1|3094319_3094577_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19725.1|3094615_3094798_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY19726.1|3094827_3095778_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20786.1|3095907_3096300_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY19727.1|3096576_3097488_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY19728.1|3097612_3098587_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY19729.1|3098583_3099534_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	3113041	3166559	4101116	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZY19740.1|3113041_3113992_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19741.1|3114104_3114356_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19742.1|3114549_3114765_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19743.1|3114861_3115980_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY19744.1|3116099_3116312_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19745.1|3116471_3116693_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19746.1|3116745_3117696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19747.1|3118872_3120243_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY19748.1|3120275_3121067_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19749.1|3121079_3122135_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19750.1|3122160_3123036_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19751.1|3123141_3123390_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19752.1|3123424_3124879_-	carboxylase	NA	NA	NA	NA	NA
AZY19753.1|3124875_3125397_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY19754.1|3125425_3126778_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY19755.1|3127001_3129890_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY19756.1|3132034_3133336_+	phospholipase	NA	NA	NA	NA	NA
AZY19757.1|3133350_3134067_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY19758.1|3134348_3135029_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY19759.1|3135040_3135208_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19760.1|3135316_3135469_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19761.1|3135556_3136216_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY19762.1|3136596_3138447_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY19763.1|3138443_3139394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19764.1|3140557_3142273_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY19765.1|3142283_3142775_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY19766.1|3142847_3143864_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY19767.1|3144031_3144811_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY19768.1|3144829_3145357_-	lipoprotein	NA	NA	NA	NA	NA
AZY19769.1|3145355_3145562_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19770.1|3145650_3145920_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY19771.1|3146010_3148170_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY19772.1|3148290_3149010_+	lipoprotein	NA	NA	NA	NA	NA
AZY19773.1|3149006_3149957_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19774.1|3150097_3151315_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY19775.1|3151308_3151920_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY19776.1|3152553_3153531_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY19777.1|3153674_3154421_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY19778.1|3154442_3154889_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY19779.1|3155676_3157908_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY19780.1|3157930_3158731_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19781.1|3159012_3160245_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY19782.1|3160355_3161345_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY19783.1|3161375_3162764_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY19784.1|3164362_3165346_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20788.1|3165542_3166559_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	3231017	3304179	4101116	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY19838.1|3231017_3231968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19839.1|3231964_3232984_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY19840.1|3232993_3235702_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY19841.1|3235849_3236506_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY19842.1|3236604_3237555_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19843.1|3237660_3238596_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY19844.1|3238795_3240490_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY19845.1|3240524_3241451_+	VOC family protein	NA	NA	NA	NA	NA
AZY20791.1|3241519_3242617_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19846.1|3242635_3243499_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY19847.1|3243510_3244293_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY19848.1|3244289_3245408_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY19849.1|3245404_3246937_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY19850.1|3246977_3247985_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY19851.1|3248129_3248852_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19852.1|3248867_3249890_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY19853.1|3250206_3250941_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19854.1|3251025_3252771_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY19855.1|3252767_3253520_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY19856.1|3253564_3254521_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY19857.1|3254609_3255176_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19858.1|3255183_3256044_-	aminotransferase	NA	NA	NA	NA	NA
AZY19859.1|3256073_3256817_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY19860.1|3256833_3257517_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY19861.1|3258354_3259269_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY19862.1|3259333_3260242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19863.1|3260332_3261757_-	protein CyaE	NA	NA	NA	NA	NA
AZY19864.1|3261758_3263081_-	protein CyaD	NA	NA	NA	NA	NA
AZY19865.1|3263077_3265216_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY19866.1|3265293_3270414_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY20792.1|3270600_3270780_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19867.1|3270862_3271450_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY19868.1|3271465_3272947_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY19869.1|3273001_3274855_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19870.1|3275117_3276455_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY19871.1|3276489_3278487_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY19872.1|3278504_3280553_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY19873.1|3280683_3281550_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY19874.1|3281818_3282784_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY19875.1|3282898_3284047_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY19876.1|3284471_3284783_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY19877.1|3284816_3285077_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY19878.1|3285226_3286360_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY19879.1|3286430_3287567_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY19880.1|3287732_3288527_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY19881.1|3288589_3289033_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY19882.1|3289148_3290099_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19883.1|3290085_3290274_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19884.1|3290221_3290629_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY19885.1|3290701_3292897_+	DNA methylase	NA	NA	NA	NA	NA
AZY19886.1|3293118_3294069_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19887.1|3294028_3294553_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY19888.1|3294684_3295656_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20793.1|3295775_3298220_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY19889.1|3298235_3298826_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY19890.1|3299069_3300020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19891.1|3300177_3301443_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY19892.1|3301476_3302574_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY19893.1|3303228_3304179_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	3315466	3415579	4101116	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZY19904.1|3315466_3316417_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19905.1|3317148_3317526_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY19906.1|3317510_3318212_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19907.1|3318355_3319048_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY19908.1|3319047_3320151_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY19909.1|3320260_3322633_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY19910.1|3322629_3324189_+	chaperone SurA	NA	NA	NA	NA	NA
AZY19911.1|3324213_3325011_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY19912.1|3325042_3326188_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY19913.1|3326292_3327735_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY20794.1|3327737_3328826_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19914.1|3331104_3332055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19915.1|3332041_3332260_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19916.1|3333184_3333742_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY19917.1|3333717_3334068_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19918.1|3334236_3335031_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY19919.1|3335027_3336077_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY19920.1|3336076_3336766_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY19921.1|3336852_3337350_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY19922.1|3337381_3338698_-	protein TolB	NA	NA	NA	NA	NA
AZY19923.1|3338714_3339689_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY19924.1|3339725_3340184_-	protein TolR	NA	NA	NA	NA	NA
AZY19925.1|3340183_3340864_-	protein TolQ	NA	NA	NA	NA	NA
AZY19926.1|3340866_3341295_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY19927.1|3341347_3343078_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY19928.1|3343143_3343716_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY19929.1|3343696_3344383_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY19930.1|3344738_3345410_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY19931.1|3345416_3345617_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19932.1|3345959_3346241_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19933.1|3346237_3346771_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY19934.1|3346752_3347304_-	lysozyme	NA	NA	NA	NA	NA
AZY19935.1|3347282_3347525_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19936.1|3347529_3348342_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19937.1|3348341_3348605_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19938.1|3348823_3349240_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19939.1|3349244_3353201_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY19940.1|3353193_3353583_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY19941.1|3353579_3354113_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY19942.1|3354180_3354540_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19943.1|3354549_3357162_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY19944.1|3357187_3357478_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY19945.1|3357495_3357825_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY19946.1|3357834_3358353_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY19947.1|3358607_3359108_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY19948.1|3359115_3359538_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19949.1|3359534_3359933_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY19950.1|3359929_3360325_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY19951.1|3360324_3360525_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19952.1|3360526_3361009_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY19953.1|3361071_3361323_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19954.1|3361332_3361980_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY19955.1|3361997_3362948_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19956.1|3363376_3363979_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY19957.1|3364101_3364344_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY20795.1|3364349_3365405_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY19958.1|3365433_3366852_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY19959.1|3366854_3368132_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY19960.1|3368118_3368568_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY19961.1|3369243_3370194_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19962.1|3370211_3370433_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19963.1|3370447_3371146_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19964.1|3371138_3371459_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20796.1|3371938_3372550_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY19965.1|3372615_3372828_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19966.1|3373079_3374030_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19967.1|3374128_3375202_-	hypothetical protein	NA	NA	NA	NA	NA
AZY19968.1|3375369_3376164_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY19969.1|3376203_3376728_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY19970.1|3376720_3378463_-	sulfite reductase	NA	NA	NA	NA	NA
AZY19971.1|3378672_3379431_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY19972.1|3379433_3380141_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY19973.1|3380157_3381039_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY19974.1|3381049_3381808_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY20797.1|3381776_3382532_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19975.1|3382601_3384020_+	amidase	NA	NA	NA	NA	NA
AZY19976.1|3384041_3384692_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY19977.1|3384825_3385161_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY19978.1|3385249_3386200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19979.1|3386276_3388097_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY19980.1|3388101_3389175_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY19981.1|3389297_3390266_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY19982.1|3390339_3391251_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY19983.1|3391269_3391842_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY19984.1|3391922_3392471_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY19985.1|3392470_3394060_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY19986.1|3394129_3394369_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY19987.1|3394409_3395441_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY19988.1|3395500_3396682_-	monooxygenase	NA	NA	NA	NA	NA
AZY19989.1|3396778_3397231_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19990.1|3397240_3398581_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY19991.1|3398897_3399935_+	hypothetical protein	NA	NA	NA	NA	NA
AZY19992.1|3400316_3400676_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20798.1|3400759_3401701_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19993.1|3401775_3402726_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY19994.1|3403019_3404114_+	porin	NA	NA	NA	NA	NA
AZY19995.1|3404195_3405077_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY19996.1|3405098_3405938_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY19997.1|3406013_3407531_+	peptidase	NA	NA	NA	NA	NA
AZY19998.1|3407627_3408728_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY19999.1|3408744_3409167_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY20000.1|3409189_3409402_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY20001.1|3409448_3410369_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY20799.1|3410632_3411301_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY20002.1|3411303_3411633_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY20003.1|3411839_3413273_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY20004.1|3413284_3413668_-	thioredoxin	NA	NA	NA	NA	NA
AZY20005.1|3413729_3414530_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20006.1|3414628_3415579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	3701145	3834071	4101116	transposase,tRNA,integrase	uncultured_Mediterranean_phage(10.34%)	118	3745788:3745805	3790428:3790445
AZY20254.1|3701145_3702096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20255.1|3702092_3702728_-	transporter	NA	NA	NA	NA	NA
AZY20256.1|3702857_3703757_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY20257.1|3703852_3704344_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY20258.1|3704390_3705356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20259.1|3706489_3707731_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY20260.1|3707844_3708861_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY20261.1|3708895_3709372_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20262.1|3709514_3710423_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY20263.1|3710536_3711649_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY20264.1|3711749_3712283_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY20265.1|3712371_3713622_+	kynureninase	NA	NA	NA	NA	NA
AZY20266.1|3713723_3714236_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY20267.1|3714141_3714348_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20268.1|3714334_3715285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20269.1|3715350_3716289_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY20270.1|3716311_3716938_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY20271.1|3716934_3717591_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY20272.1|3717587_3718190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20273.1|3718196_3718823_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY20274.1|3718964_3719534_+	bacterioferritin	NA	NA	NA	NA	NA
AZY20275.1|3719604_3720924_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY20276.1|3721030_3721222_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY20277.1|3721473_3722763_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY20278.1|3722917_3723913_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20279.1|3723997_3724672_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20280.1|3724668_3725619_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20281.1|3725605_3725788_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20282.1|3725780_3727022_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY20283.1|3727018_3727963_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY20284.1|3728081_3729032_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20285.1|3728991_3729921_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20286.1|3729974_3730310_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY20287.1|3730354_3731119_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY20288.1|3731142_3731883_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20289.1|3731890_3733465_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY20290.1|3733478_3734456_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20291.1|3734728_3735328_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY20292.1|3735361_3742264_-	autotransporter BatB	NA	NA	NA	NA	NA
AZY20293.1|3742710_3742842_-	entericidin	NA	NA	NA	NA	NA
AZY20294.1|3742873_3743035_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20295.1|3743107_3743314_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY20296.1|3744318_3744978_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY20297.1|3745005_3746151_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3745788:3745805	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY20298.1|3746291_3746627_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY20299.1|3746701_3747562_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY20300.1|3747825_3748527_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY20301.1|3748696_3749092_+	RidA family protein	NA	NA	NA	NA	NA
AZY20302.1|3749201_3750152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20303.1|3750162_3750804_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20304.1|3750970_3751213_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20305.1|3751311_3752262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20306.1|3752297_3752765_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY20307.1|3752998_3753376_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20308.1|3753372_3753555_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20309.1|3753558_3754545_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY20310.1|3754541_3755189_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY20311.1|3755246_3755774_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20312.1|3755807_3756995_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY20313.1|3756984_3757347_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY20314.1|3757339_3757459_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20315.1|3757459_3757660_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY20316.1|3757656_3758646_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY20317.1|3760132_3762103_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY20318.1|3762344_3762743_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20319.1|3762751_3763675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20320.1|3764132_3765083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20321.1|3765313_3767005_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY20322.1|3767053_3767326_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY20323.1|3767322_3767694_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY20324.1|3767789_3767924_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY20325.1|3768329_3769739_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY20326.1|3769735_3770851_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY20327.1|3770945_3773399_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY20328.1|3773517_3774309_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20329.1|3774428_3775856_+	amidase	NA	NA	NA	NA	NA
AZY20810.1|3775894_3776866_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20330.1|3777284_3778448_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY20331.1|3778535_3779381_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY20332.1|3780937_3781888_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20333.1|3782442_3782817_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20334.1|3782891_3783950_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY20335.1|3783973_3784924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20336.1|3787805_3788975_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY20811.1|3789075_3790683_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3790428:3790445	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY20337.1|3790729_3792751_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY20338.1|3792779_3793025_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY20339.1|3793038_3794229_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY20340.1|3794424_3795390_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20341.1|3795412_3796552_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY20342.1|3796763_3797726_+	immunogenic protein	NA	NA	NA	NA	NA
AZY20343.1|3797849_3799874_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY20344.1|3800070_3802314_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY20345.1|3802592_3803051_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20346.1|3803978_3806600_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20347.1|3806663_3809291_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY20348.1|3809442_3810507_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY20349.1|3810503_3811277_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY20350.1|3811285_3812119_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY20351.1|3812131_3812911_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY20812.1|3812945_3814418_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY20352.1|3814445_3815204_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY20353.1|3815259_3817110_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY20354.1|3817203_3817680_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY20355.1|3817696_3818617_-	bestrophin	NA	NA	NA	NA	NA
AZY20356.1|3818723_3819224_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZY20357.1|3819597_3820290_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY20358.1|3820598_3821549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20359.1|3821545_3825319_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZY20360.1|3825655_3827545_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZY20361.1|3827556_3828450_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZY20362.1|3828475_3829351_+	thiazole synthase	NA	NA	NA	NA	NA
AZY20363.1|3829347_3830199_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY20364.1|3830260_3830941_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZY20365.1|3830944_3831304_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20366.1|3831304_3832264_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20367.1|3832284_3832773_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZY20813.1|3833054_3834071_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025385	Bordetella pertussis strain E198 chromosome, complete genome	4101116	4000184	4065096	4101116	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY20532.1|4000184_4000670_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20533.1|4000888_4001869_+	protein BugT	NA	NA	NA	NA	NA
AZY20534.1|4002135_4002945_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY20535.1|4002984_4003665_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY20536.1|4003658_4004117_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY20537.1|4004128_4004491_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY20538.1|4004573_4005257_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY20539.1|4005312_4005621_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY20540.1|4005639_4005954_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY20541.1|4005950_4008425_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY20542.1|4008432_4009824_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY20543.1|4009820_4010006_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY20544.1|4009984_4010686_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY20545.1|4010682_4011504_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
AZY20822.1|4011484_4012609_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY20546.1|4012601_4013621_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY20547.1|4013826_4014861_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY20823.1|4014961_4015753_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY20548.1|4015835_4016210_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY20549.1|4016187_4017597_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY20550.1|4017589_4018972_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY20551.1|4019306_4020911_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY20552.1|4020946_4021960_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY20553.1|4021970_4022897_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY20554.1|4023287_4024238_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20555.1|4024407_4025634_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY20556.1|4025833_4026700_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY20557.1|4026692_4027655_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY20558.1|4027755_4028706_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20559.1|4028804_4029755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20560.1|4029853_4030804_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY20561.1|4030800_4032294_-	RND transporter	NA	NA	NA	NA	NA
AZY20562.1|4032290_4035398_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY20563.1|4035394_4038463_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY20564.1|4038459_4039710_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY20565.1|4039890_4040652_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY20566.1|4040684_4041335_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY20567.1|4041337_4042177_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY20568.1|4042417_4043161_+	hypothetical protein	NA	NA	NA	NA	NA
AZY20569.1|4043243_4043591_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY20570.1|4043688_4044531_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY20571.1|4044575_4045463_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY20572.1|4045489_4045678_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY20573.1|4045775_4047233_+	MFS transporter	NA	NA	NA	NA	NA
AZY20574.1|4047219_4048746_+	glycerol kinase	NA	NA	NA	NA	NA
AZY20575.1|4048764_4049232_-	hypothetical protein	NA	NA	NA	NA	NA
AZY20576.1|4049231_4050254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY20577.1|4050374_4051115_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY20578.1|4051169_4052270_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY20579.1|4052271_4053462_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY20580.1|4053581_4054598_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY20581.1|4054916_4055588_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY20582.1|4055584_4056493_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY20583.1|4056704_4057352_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY20584.1|4061203_4062280_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY20585.1|4062290_4063100_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY20586.1|4063189_4063963_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY20587.1|4064145_4065096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
