The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	0	123122	4105345	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZY06459.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY06460.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY06461.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY06462.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY06463.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY06464.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY06465.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY06466.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY06467.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY06468.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY06469.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY06470.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY06471.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY06472.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY09845.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY06473.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06474.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY06475.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY06476.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06477.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY06478.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06479.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY06480.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY09846.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06481.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY06482.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY06483.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06484.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY06485.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY06486.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY06487.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY06488.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY06489.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY06490.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY06491.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY06492.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY06493.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06494.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06495.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY06496.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06497.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY06498.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY06499.1|51190_52141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06500.1|52183_53440_+	MFS transporter	NA	NA	NA	NA	NA
AZY06501.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY06502.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY06503.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY06504.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY06505.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06506.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06507.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY06508.1|61523_61943_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY06509.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09847.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06510.1|64522_65104_-|protease	protease	protease	NA	NA	NA	NA
AZY06511.1|65116_65434_-	ferredoxin	NA	NA	NA	NA	NA
AZY06512.1|65537_66596_-	oxidoreductase	NA	NA	NA	NA	NA
AZY06513.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY06514.1|68531_69713_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06515.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06516.1|71178_71493_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY06517.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY06518.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY06519.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY06520.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09848.1|76329_77079_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06521.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY06522.1|78683_79634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09849.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06523.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY06524.1|83871_84576_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY06525.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY06526.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
AZY06527.1|86530_87763_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY06528.1|87780_89040_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY06529.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY06530.1|90159_91260_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY06531.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY06532.1|91842_92895_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY09850.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY06533.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY06534.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06535.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY06536.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY06537.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY06538.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY06539.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06540.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY06541.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY06542.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY06543.1|103857_104133_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY06544.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY06545.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY06546.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY06547.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY06548.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY06549.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06550.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY06551.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY06552.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY06553.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY09851.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY06554.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09852.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY06555.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY06556.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY06557.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06558.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY06559.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY06560.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	165941	226464	4105345	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY06592.1|165941_166892_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06593.1|168335_169238_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06594.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
AZY06595.1|170175_171558_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY06596.1|171591_172221_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY06597.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY06598.1|173901_174585_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06599.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
AZY06600.1|175349_176300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06601.1|177415_177943_+	lipoprotein	NA	NA	NA	NA	NA
AZY06602.1|178034_178850_+	lipoprotein	NA	NA	NA	NA	NA
AZY06603.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY06604.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY06605.1|182010_182283_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06606.1|182381_183470_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY06607.1|183473_185378_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY06608.1|185374_189061_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY06609.1|189121_189685_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY06610.1|189692_190115_-	glyoxalase	NA	NA	NA	NA	NA
AZY06611.1|190142_190562_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY09857.1|190590_191037_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY06612.1|191163_191661_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06613.1|191815_194086_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY06614.1|194134_195367_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY06615.1|195465_196416_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06616.1|196461_197154_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY06617.1|197150_198044_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY06618.1|198438_199539_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY06619.1|199620_199995_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY06620.1|200054_202919_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY06621.1|203063_203804_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06622.1|203873_205085_+	CoA transferase	NA	NA	NA	NA	NA
AZY06623.1|205113_206082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY06624.1|206695_207646_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06625.1|207802_208126_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY06626.1|208230_209280_-	cyclase	NA	NA	NA	NA	NA
AZY06627.1|209276_210101_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY06628.1|210101_210398_-	YciI family protein	NA	NA	NA	NA	NA
AZY06629.1|210423_210699_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY06630.1|210755_211400_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY06631.1|211399_212086_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY09858.1|212215_213067_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06632.1|213117_213843_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY06633.1|213874_215224_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY06634.1|215335_216268_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY06635.1|216725_219521_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY06636.1|220114_223057_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY06637.1|223128_223848_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY06638.1|223886_224435_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY06639.1|224589_225489_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY06640.1|225513_226464_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	234396	287984	4105345	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
AZY06648.1|234396_235347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06649.1|235433_236384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06650.1|236380_237331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06651.1|237429_238227_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY06652.1|239176_239587_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY06653.1|240608_241352_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06654.1|241395_242439_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06655.1|242609_244712_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06656.1|246122_247079_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY06657.1|247097_247589_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY06658.1|247585_248941_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY06659.1|248941_249640_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY06660.1|249636_250338_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY06661.1|250590_251640_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY06662.1|251745_252687_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY06663.1|252683_254573_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY06664.1|254659_255298_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09859.1|255440_256685_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY06665.1|256756_257293_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY06666.1|257444_258836_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY06667.1|258852_259833_-	AEC family transporter	NA	NA	NA	NA	NA
AZY06668.1|259968_260952_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY06669.1|261016_261916_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06670.1|262022_263777_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY06671.1|263784_264909_-	CoA transferase	NA	NA	NA	NA	NA
AZY06672.1|264922_265903_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY06673.1|266633_267584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06674.1|268143_268689_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06675.1|268772_270392_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY06676.1|270407_271562_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY06677.1|271575_271701_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY06678.1|271697_273449_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY06679.1|273445_275125_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY06680.1|275160_275736_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY06681.1|276878_277157_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY06682.1|278200_279151_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06683.1|279137_279353_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06684.1|279428_279590_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY06685.1|279597_279738_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06686.1|280256_280706_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY06687.1|280715_281327_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY06688.1|281485_282340_-	cytochrome c1	NA	NA	NA	NA	NA
AZY06689.1|282359_283742_-	cytochrome b	NA	NA	NA	NA	NA
AZY06690.1|283806_284448_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY06691.1|284587_285046_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY06692.1|285070_285847_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY09860.1|285900_287037_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY06693.1|287033_287984_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	556369	615669	4105345	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY06915.1|556369_557320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06916.1|558643_559420_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY06917.1|559454_561227_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY06918.1|561228_562131_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY06919.1|562255_562615_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY06920.1|562646_563609_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY06921.1|563707_564658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06922.1|564670_565606_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY06923.1|565665_566505_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY06924.1|566501_567671_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY06925.1|567667_568957_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06926.1|568999_569374_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY06927.1|569479_570217_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY06928.1|570224_570929_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY06929.1|571192_572713_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY06930.1|572768_573332_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY06931.1|573350_574382_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY06932.1|574378_575167_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY06933.1|575342_576332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06934.1|578088_579039_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06935.1|580261_581164_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06936.1|581165_582020_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY06937.1|582066_583176_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY06938.1|583186_583705_-	flavin reductase	NA	NA	NA	NA	NA
AZY06939.1|583734_584367_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY06940.1|584438_585098_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY06941.1|585094_586315_-	MFS transporter	NA	NA	NA	NA	NA
AZY06942.1|586583_587456_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY06943.1|587611_588349_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06944.1|588351_589947_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY09881.1|590078_591068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY06945.1|591064_591775_+	oxidoreductase	NA	NA	NA	NA	NA
AZY09882.1|591870_592887_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY06946.1|593158_593785_-	aminotransferase	NA	NA	NA	NA	NA
AZY06947.1|593840_594968_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY06948.1|594973_600691_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY06949.1|600974_601190_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06950.1|601258_602203_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY06951.1|602391_603327_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY06952.1|603444_605016_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06953.1|605095_606304_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY06954.1|606801_607719_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY06955.1|610079_610301_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09883.1|610631_611648_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY06956.1|611732_611984_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY06957.1|611987_612803_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY06958.1|612915_613794_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY06959.1|613905_615669_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	621824	675565	4105345	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZY06963.1|621824_622775_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06964.1|622843_623842_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY06965.1|623846_624527_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY06966.1|624664_625057_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY09884.1|625164_626181_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY06967.1|626420_627206_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY06968.1|627300_628710_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY06969.1|628720_629521_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY06970.1|629541_630312_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY06971.1|630354_630822_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY06972.1|630818_631769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06973.1|633717_634596_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY06974.1|635522_638501_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06975.1|638499_638868_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06976.1|638854_639805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06977.1|639801_640890_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06978.1|640925_641789_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY06979.1|642928_643318_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY06980.1|643321_644104_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY06981.1|644137_644890_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY06982.1|645198_646338_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06983.1|646334_647126_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY06984.1|647122_647872_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY06985.1|647868_648741_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY06986.1|648740_649742_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY06987.1|649738_650902_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY06988.1|650927_651611_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06989.1|651564_652899_+	CoA ligase	NA	NA	NA	NA	NA
AZY06990.1|652891_653986_+	CoA transferase	NA	NA	NA	NA	NA
AZY09885.1|654752_655703_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06991.1|657643_658903_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06992.1|658899_660438_+	SpoVR family protein	NA	NA	NA	NA	NA
AZY06993.1|660434_661631_-	MFS transporter	NA	NA	NA	NA	NA
AZY06994.1|661627_663019_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY06995.1|663015_664032_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY06996.1|664100_665336_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY06997.1|665436_666231_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06998.1|666600_667008_+	GFA family protein	NA	NA	NA	NA	NA
AZY06999.1|667425_667698_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY07000.1|668279_669134_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY07001.1|669234_669537_+	urease subunit gamma	NA	NA	NA	NA	NA
AZY07002.1|669563_670199_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY07003.1|670215_670524_+	urease subunit beta	NA	NA	NA	NA	NA
AZY07004.1|670520_672236_+	urease subunit alpha	NA	NA	NA	NA	NA
AZY07005.1|672238_672856_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY07006.1|672956_673541_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY07007.1|673565_674210_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY07008.1|674614_675565_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	724452	764453	4105345	tRNA,integrase,protease,transposase	Pseudomonas_phage(33.33%)	32	721751:721769	741639:741657
721751:721769	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY07044.1|724452_725100_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY07045.1|725096_725879_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY07046.1|725951_727043_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY07047.1|727322_728450_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY07048.1|728791_729838_+	Fic family protein	NA	NA	NA	NA	NA
AZY09889.1|729848_729989_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY07049.1|729985_733105_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY07050.1|733106_736058_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY07051.1|736073_737285_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY07052.1|737281_737482_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07053.1|737468_738419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07054.1|738435_738930_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY07055.1|738933_739191_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07056.1|739215_740646_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY07057.1|740727_741012_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZY07058.1|741795_742746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
741639:741657	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY07059.1|743164_745729_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY07060.1|745773_747627_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07061.1|747959_749531_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY07062.1|750972_751923_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07063.1|752008_752749_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07064.1|752975_753923_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07065.1|755310_756261_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07066.1|756247_756436_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07067.1|756454_757270_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07068.1|757402_758842_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY07069.1|758855_759197_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY07070.1|759251_760907_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY07071.1|761058_762069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY07072.1|762201_762975_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07073.1|763318_763516_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07074.1|763502_764453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	774380	821998	4105345	transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZY07082.1|774380_775331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07083.1|775469_776222_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY07084.1|776460_778185_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY07085.1|778204_779464_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY07086.1|779478_780573_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY07087.1|780569_782696_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY07088.1|782708_783389_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY09893.1|783666_785040_+	MFS transporter	NA	NA	NA	NA	NA
AZY07089.1|785041_786061_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY07090.1|786124_787096_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07091.1|787160_788111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07092.1|788209_789052_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY07093.1|789051_789387_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY07094.1|789457_790876_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY07095.1|791155_792196_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY07096.1|792275_792527_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY07097.1|792637_793936_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY07098.1|794084_794939_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY07099.1|794935_795826_+	acyltransferase	NA	NA	NA	NA	NA
AZY07100.1|795868_796780_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY07101.1|796806_797499_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY07102.1|797513_798494_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY07103.1|798506_800648_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY07104.1|800696_801665_-	nickel transporter	NA	NA	NA	NA	NA
AZY09894.1|801655_802279_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY07105.1|802284_803220_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07106.1|803216_804113_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY07107.1|804109_804832_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY07108.1|804822_805023_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07109.1|805160_805664_+	transcriptional repressor	NA	NA	NA	NA	NA
AZY07110.1|805940_807056_+	GTP-binding protein	NA	NA	NA	NA	NA
AZY07111.1|807198_807663_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY07112.1|807810_808350_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY07113.1|808371_809706_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY09895.1|809719_810025_-	RND transporter	NA	NA	NA	NA	NA
AZY07114.1|810449_811031_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY07115.1|811112_812063_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07116.1|812161_813112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07117.1|813552_814458_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY07118.1|814513_816121_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY07119.1|816374_817880_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY07120.1|817894_818359_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY07121.1|818648_819599_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07122.1|819761_820292_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07123.1|820291_820603_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZY07124.1|821047_821998_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1006212	1100249	4105345	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY07265.1|1006212_1007163_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07266.1|1007265_1007928_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07267.1|1008030_1008441_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07268.1|1008545_1009547_+	amidase	NA	NA	NA	NA	NA
AZY07269.1|1009549_1010746_+	CoA transferase	NA	NA	NA	NA	NA
AZY07270.1|1010766_1011570_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY07271.1|1011650_1011947_+	histidine kinase	NA	NA	NA	NA	NA
AZY07272.1|1011977_1012541_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY09908.1|1012581_1013439_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY07273.1|1013446_1014196_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY07274.1|1014217_1015090_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07275.1|1015118_1015898_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY07276.1|1015931_1016729_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07277.1|1018180_1019353_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY07278.1|1019383_1019776_+	RidA family protein	NA	NA	NA	NA	NA
AZY07279.1|1019769_1020630_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY07280.1|1020633_1021596_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY09909.1|1022372_1023062_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY07281.1|1023922_1024873_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07282.1|1025222_1026092_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07283.1|1026162_1026858_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY07284.1|1026847_1027357_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY07285.1|1027353_1028574_+	MFS transporter	NA	NA	NA	NA	NA
AZY07286.1|1028521_1029424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07287.1|1030310_1031597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07288.1|1031635_1033009_+	amidase	NA	NA	NA	NA	NA
AZY07289.1|1033047_1033749_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY07290.1|1034047_1035037_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY07291.1|1035137_1035599_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY07292.1|1035614_1036163_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY07293.1|1036304_1037780_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY07294.1|1037885_1038977_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY07295.1|1038980_1039763_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY07296.1|1039772_1040561_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY07297.1|1041686_1042121_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY07298.1|1042117_1043128_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY07299.1|1043171_1044098_-	VOC family protein	NA	NA	NA	NA	NA
AZY07300.1|1044384_1044753_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY09910.1|1044969_1045920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09911.1|1045901_1048391_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY07301.1|1048439_1049132_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY07302.1|1049204_1050404_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY07303.1|1050421_1051327_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07304.1|1051442_1052372_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY09912.1|1052397_1053744_+	MFS transporter	NA	NA	NA	NA	NA
AZY09913.1|1053771_1054521_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY07305.1|1054534_1055317_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY07306.1|1055509_1056460_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07307.1|1056521_1057667_-	porin	NA	NA	NA	NA	NA
AZY07308.1|1058143_1058980_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY07309.1|1059049_1060015_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07310.1|1060011_1060962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07311.1|1060948_1061143_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07312.1|1061347_1061890_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07313.1|1062925_1063876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07314.1|1064117_1064486_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07315.1|1064531_1065656_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09914.1|1066790_1067531_-	oxidoreductase	NA	NA	NA	NA	NA
AZY07316.1|1067634_1068255_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07317.1|1068358_1069309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07318.1|1069305_1071414_-	AsmA family protein	NA	NA	NA	NA	NA
AZY07319.1|1071558_1072218_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY07320.1|1072249_1072714_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY07321.1|1072989_1073175_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07322.1|1073226_1073979_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY07323.1|1073985_1075248_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07324.1|1075289_1076528_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07325.1|1077605_1078733_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY07326.1|1078743_1079571_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY07327.1|1079557_1080424_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY07328.1|1081790_1082195_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07329.1|1082286_1083237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09915.1|1083606_1084518_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY07330.1|1084532_1085243_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07331.1|1085239_1086484_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY07332.1|1086485_1086920_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY07333.1|1086948_1087254_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY07334.1|1087147_1087366_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07335.1|1087352_1088303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07336.1|1088359_1089508_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY07337.1|1089588_1090539_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07338.1|1091070_1091868_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07339.1|1091915_1092569_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY07340.1|1092525_1093614_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY07341.1|1093778_1096004_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY07342.1|1098281_1099178_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY07343.1|1099066_1099312_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07344.1|1099298_1100249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1130635	1201605	4105345	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY07373.1|1130635_1131586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07374.1|1131642_1132755_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY07375.1|1135138_1136089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07376.1|1136679_1137456_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY07377.1|1137573_1137837_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY07378.1|1137937_1138942_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY07379.1|1139142_1140744_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY07380.1|1140769_1141528_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY07381.1|1141619_1142276_-	adenylate kinase	NA	NA	NA	NA	NA
AZY07382.1|1142366_1143131_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY07383.1|1143140_1143329_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07384.1|1143384_1144428_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY07385.1|1144424_1144838_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY07386.1|1144834_1145455_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY07387.1|1145735_1146686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07388.1|1146853_1148245_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY07389.1|1148317_1148896_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY07390.1|1149012_1150410_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY07391.1|1150525_1151731_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY07392.1|1151830_1152349_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY07393.1|1152443_1152689_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY07394.1|1152916_1153231_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY07395.1|1153320_1158510_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY09917.1|1158506_1160675_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY07396.1|1160694_1163046_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY07397.1|1163050_1164370_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY07398.1|1164388_1166062_+	MCE family protein	NA	NA	NA	NA	NA
AZY07399.1|1166066_1166735_+	lipoprotein	NA	NA	NA	NA	NA
AZY07400.1|1166891_1170713_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY07401.1|1171043_1171994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07402.1|1172015_1173161_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07403.1|1173309_1174239_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY07404.1|1174235_1175324_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY07405.1|1175320_1176124_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY07406.1|1176120_1176852_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY07407.1|1176909_1178199_-	MFS transporter	NA	NA	NA	NA	NA
AZY07408.1|1178295_1178898_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07409.1|1183450_1183789_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY07410.1|1184457_1184763_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07411.1|1186469_1187420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07412.1|1187416_1188748_-	MFS transporter	NA	NA	NA	NA	NA
AZY07413.1|1189987_1192009_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY07414.1|1192001_1192643_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY07415.1|1192639_1193047_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY07416.1|1193043_1193844_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY07417.1|1193918_1194623_+	oxidoreductase	NA	NA	NA	NA	NA
AZY07418.1|1194654_1195449_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY07419.1|1195445_1196396_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07420.1|1196494_1197445_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07421.1|1197543_1197978_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY07422.1|1198060_1200397_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY09918.1|1200588_1201605_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 11
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1301825	1359036	4105345	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY07500.1|1301825_1302776_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07501.1|1306522_1307134_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY07502.1|1307356_1308817_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY07503.1|1308913_1310506_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY07504.1|1310492_1310771_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07505.1|1310829_1311117_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY07506.1|1311118_1312459_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY07507.1|1312554_1313244_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07508.1|1313256_1314687_+	MFS transporter	NA	NA	NA	NA	NA
AZY07509.1|1316411_1317233_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07510.1|1317243_1318815_+	amidohydrolase	NA	NA	NA	NA	NA
AZY07511.1|1318843_1319821_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07512.1|1319847_1320651_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY07513.1|1320647_1321442_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY07514.1|1321449_1322685_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY07515.1|1322677_1323112_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY07516.1|1323861_1324812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07517.1|1325433_1327161_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY07518.1|1327272_1328631_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY07519.1|1328751_1328937_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07520.1|1328923_1329874_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07521.1|1329914_1330985_+	FUSC family protein	NA	NA	NA	NA	NA
AZY09924.1|1331007_1331886_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY07522.1|1332057_1333029_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY07523.1|1333191_1334034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07524.1|1334195_1334876_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY07525.1|1334869_1336039_+	amine oxidase	NA	NA	NA	NA	NA
AZY07526.1|1336035_1337067_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY07527.1|1337110_1338352_+	MFS transporter	NA	NA	NA	NA	NA
AZY07528.1|1338386_1339919_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY07529.1|1339999_1340623_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY07530.1|1340653_1341265_+	LysE family translocator	NA	NA	NA	NA	NA
AZY07531.1|1341300_1341771_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY07532.1|1342202_1343207_+	peptidase M20	NA	NA	NA	NA	NA
AZY07533.1|1343243_1344758_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07534.1|1344761_1345721_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY07535.1|1345749_1346553_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY07536.1|1346554_1348189_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY07537.1|1348272_1349334_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY07538.1|1349532_1349802_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07539.1|1349805_1350330_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY07540.1|1350745_1351696_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07541.1|1351692_1352763_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY07542.1|1352835_1353474_+	DedA family protein	NA	NA	NA	NA	NA
AZY07543.1|1353768_1353996_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY07544.1|1354118_1354832_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY07545.1|1355076_1356027_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07546.1|1356130_1356412_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07547.1|1356526_1357975_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY07548.1|1358085_1359036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1449269	1513485	4105345	transposase,tRNA,protease	Salmonella_phage(16.67%)	60	NA	NA
AZY07630.1|1449269_1450220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07631.1|1450386_1450740_+	cytochrome C	NA	NA	NA	NA	NA
AZY07632.1|1450752_1451115_+	cytochrome	NA	NA	NA	NA	NA
AZY07633.1|1451156_1451582_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY07634.1|1451784_1453041_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY07635.1|1453239_1454220_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07636.1|1454369_1455611_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07637.1|1455709_1456660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07638.1|1456668_1457364_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY07639.1|1460185_1460785_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY07640.1|1460795_1462961_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY07641.1|1462984_1464769_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY07642.1|1464768_1464858_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY07643.1|1465552_1465825_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY07644.1|1465824_1467891_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY07645.1|1467887_1468838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07646.1|1468936_1469887_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07647.1|1470002_1470335_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY07648.1|1470331_1471018_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY07649.1|1471004_1471964_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY09932.1|1472005_1474366_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY07650.1|1474365_1474998_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY07651.1|1475060_1476440_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY07652.1|1476486_1477842_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY07653.1|1478120_1478369_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07654.1|1478556_1478874_-	virulence factor	NA	NA	NA	NA	NA
AZY07655.1|1479146_1479662_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY07656.1|1479755_1479917_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07657.1|1479932_1480688_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY07658.1|1481026_1481233_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07659.1|1481240_1481900_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY07660.1|1482194_1484399_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY07661.1|1484509_1485733_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY07662.1|1485855_1486830_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY07663.1|1486897_1488091_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY07664.1|1488105_1488906_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY07665.1|1488902_1490759_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY07666.1|1490755_1491361_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY07667.1|1491379_1492765_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY07668.1|1493490_1494717_+	transporter	NA	NA	NA	NA	NA
AZY07669.1|1494805_1495588_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY07670.1|1495686_1496637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07671.1|1496663_1497437_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY07672.1|1497448_1498690_+	MFS transporter	NA	NA	NA	NA	NA
AZY07673.1|1500506_1501334_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AZY07674.1|1501335_1502046_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY07675.1|1502042_1502642_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY09933.1|1502750_1503344_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AZY07676.1|1503395_1503578_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AZY07677.1|1503634_1504693_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AZY07678.1|1504692_1505679_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AZY07679.1|1505760_1506696_+	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AZY07680.1|1506697_1507450_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AZY09934.1|1507632_1507872_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AZY07681.1|1508061_1509291_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AZY07682.1|1509292_1509793_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07683.1|1509789_1510389_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AZY07684.1|1510401_1510902_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07685.1|1510898_1511960_+	siderophore-interacting protein	NA	NA	NA	NA	NA
AZY07686.1|1511997_1513485_+|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 13
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1743220	1791235	4105345	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
AZY07876.1|1743220_1744171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07877.1|1744269_1746870_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY07878.1|1746976_1747981_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY07879.1|1748089_1749430_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY07880.1|1749470_1750499_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07881.1|1750694_1751240_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07882.1|1751236_1751797_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY07883.1|1751895_1752846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07884.1|1752883_1753471_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY07885.1|1753488_1753872_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY07886.1|1755231_1756524_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY07887.1|1756658_1757699_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY09943.1|1757796_1758813_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY07888.1|1759080_1759728_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY07889.1|1759853_1760612_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY09944.1|1760686_1761376_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY07890.1|1761393_1762278_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY07891.1|1762274_1763054_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY07892.1|1763080_1763758_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09945.1|1764046_1764799_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07893.1|1764917_1766318_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY07894.1|1766341_1766740_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY07895.1|1766915_1767116_+	copper chaperone	NA	NA	NA	NA	NA
AZY07896.1|1767254_1767983_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY07897.1|1768116_1769532_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY07898.1|1769535_1770399_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY07899.1|1770411_1771161_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY07900.1|1771343_1773359_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY09946.1|1773340_1773889_-	arylesterase	NA	NA	NA	NA	NA
AZY07901.1|1773965_1774685_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY07902.1|1774783_1775734_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07903.1|1775832_1776783_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07904.1|1776931_1777270_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY07905.1|1777327_1777489_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY07906.1|1777520_1777721_-	CsbD family protein	NA	NA	NA	NA	NA
AZY07907.1|1777986_1780560_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY07908.1|1780630_1783204_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY07909.1|1785730_1786219_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY07910.1|1786310_1787462_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY07911.1|1787515_1788337_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY07912.1|1788375_1789605_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY07913.1|1789733_1790174_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY07914.1|1790118_1790298_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07915.1|1790284_1791235_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1794628	1855833	4105345	tRNA,protease,transposase	Lake_Baikal_phage(21.43%)	53	NA	NA
AZY07920.1|1794628_1797490_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY07921.1|1797479_1798445_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY07922.1|1798504_1800499_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY07923.1|1800597_1801548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07924.1|1801544_1801919_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07925.1|1802180_1803389_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY07926.1|1803385_1805686_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY07927.1|1805738_1808351_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY07928.1|1808710_1810636_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY07929.1|1810632_1811529_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY07930.1|1811535_1812675_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY07931.1|1812674_1813496_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY07932.1|1815066_1815396_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY07933.1|1815778_1817035_+	autotransporter Phg	NA	NA	NA	NA	NA
AZY07934.1|1817109_1817391_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07935.1|1817432_1817753_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07936.1|1818059_1818263_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY07937.1|1818346_1818913_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY07938.1|1819258_1819459_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY07939.1|1819570_1820149_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY07940.1|1820327_1821638_+	trigger factor	NA	NA	NA	NA	NA
AZY07941.1|1821640_1822294_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY07942.1|1822398_1823703_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY07943.1|1823891_1826345_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY07944.1|1826468_1827419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY07945.1|1827646_1828870_+	CoA transferase	NA	NA	NA	NA	NA
AZY07946.1|1828935_1829907_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY07947.1|1829919_1830375_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY07948.1|1830388_1831192_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY07949.1|1831188_1831620_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07950.1|1831616_1832774_+	thiolase	NA	NA	NA	NA	NA
AZY07951.1|1832795_1833572_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY07952.1|1835736_1836453_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY07953.1|1836445_1837087_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY07954.1|1837121_1837853_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07955.1|1837870_1838083_+	hypothetical protein	NA	NA	NA	NA	NA
AZY07956.1|1838653_1839604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07957.1|1841161_1841890_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY07958.1|1841940_1843143_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY07959.1|1843220_1845257_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY07960.1|1845509_1846001_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY07961.1|1846216_1846729_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY07962.1|1846746_1847958_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY07963.1|1847995_1848406_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY07964.1|1848407_1848731_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY07965.1|1848733_1849246_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY07966.1|1849375_1851238_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY07967.1|1851247_1851589_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY07968.1|1851588_1851783_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY07969.1|1851907_1852801_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY07970.1|1852797_1853748_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY07971.1|1853872_1854682_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY07972.1|1854882_1855833_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1883616	1924307	4105345	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
AZY07992.1|1883616_1886241_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY07993.1|1886227_1886482_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY07994.1|1886548_1887130_-	hypothetical protein	NA	NA	NA	NA	NA
AZY07995.1|1887433_1887694_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY07996.1|1887859_1888483_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY07997.1|1888482_1889256_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY07998.1|1889252_1890461_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY07999.1|1890486_1890960_-	RidA family protein	NA	NA	NA	NA	NA
AZY08000.1|1891033_1891984_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08001.1|1892082_1893033_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08002.1|1893131_1894481_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY08003.1|1895246_1896002_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY08004.1|1896094_1898977_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY08005.1|1899299_1899725_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY08006.1|1899752_1900901_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY08007.1|1900897_1901404_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY08008.1|1901410_1902706_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY08009.1|1902746_1904051_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY08010.1|1904052_1904691_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08011.1|1904693_1905854_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY08012.1|1905880_1907236_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY08013.1|1907239_1908310_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY08014.1|1908448_1908685_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY08015.1|1908772_1909879_+	GTPase HflX	NA	NA	NA	NA	NA
AZY08016.1|1909844_1911149_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY08017.1|1911167_1912067_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY08018.1|1912250_1913408_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY08019.1|1913472_1914780_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY08020.1|1914893_1915433_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY08021.1|1915710_1915923_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY08022.1|1915942_1917973_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY09948.1|1918772_1920941_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY08023.1|1921350_1921650_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08024.1|1921934_1922348_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY08025.1|1922307_1923258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08026.1|1923356_1924307_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	1935511	1996305	4105345	transposase	Klosneuvirus(16.67%)	58	NA	NA
AZY08040.1|1935511_1936462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08041.1|1936458_1937733_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY08042.1|1937830_1939030_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY08043.1|1939026_1939680_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY08044.1|1939676_1941113_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY08045.1|1941100_1941460_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY08046.1|1943379_1945245_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY09950.1|1945502_1947023_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY08047.1|1947110_1947761_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY08048.1|1948709_1950005_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY08049.1|1950026_1950911_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09951.1|1951009_1951885_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY08050.1|1951874_1952231_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY08051.1|1952304_1953336_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY08052.1|1953465_1953645_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY08053.1|1953742_1954267_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY08054.1|1954277_1955114_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY08055.1|1955226_1955598_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY08056.1|1955594_1956146_+	ATPase	NA	NA	NA	NA	NA
AZY08057.1|1956161_1957853_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY08058.1|1957901_1958582_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08059.1|1958829_1959294_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08060.1|1959463_1960393_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY08061.1|1960405_1961053_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08062.1|1961126_1962944_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY08063.1|1963027_1963978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08064.1|1964630_1965581_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08065.1|1965599_1965947_-	GFA family protein	NA	NA	NA	NA	NA
AZY08066.1|1965975_1967415_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY08067.1|1967433_1967829_-	VOC family protein	NA	NA	NA	NA	NA
AZY08068.1|1968003_1968612_+	peptidase S16	NA	NA	NA	NA	NA
AZY08069.1|1968624_1969443_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY08070.1|1969394_1970369_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY08071.1|1970397_1971459_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08072.1|1971455_1973672_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY08073.1|1973685_1974144_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY08074.1|1974301_1974646_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08075.1|1974802_1975708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09952.1|1975794_1976808_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY09953.1|1978787_1979804_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY08076.1|1979946_1981299_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY08077.1|1981473_1981770_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08078.1|1982907_1983858_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08079.1|1984343_1984520_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08080.1|1984491_1985130_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08081.1|1985204_1986176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY08082.1|1986179_1987034_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZY08083.1|1987052_1987874_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY08084.1|1987905_1988700_+	amidase	NA	NA	NA	NA	NA
AZY08085.1|1988748_1989354_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09954.1|1989350_1990145_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY08086.1|1990430_1991936_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZY08087.1|1991977_1992760_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZY08088.1|1992829_1993276_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08089.1|1993272_1994499_-	NnrS family protein	NA	NA	NA	NA	NA
AZY08090.1|1994491_1994896_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZY08091.1|1995055_1995358_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZY08092.1|1995354_1996305_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	2246191	2307539	4105345	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZY08278.1|2246191_2247142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08279.1|2247258_2247978_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08280.1|2248150_2249137_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08281.1|2249137_2249620_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY08282.1|2249623_2250907_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY08283.1|2250903_2251842_+	CoA ester lyase	NA	NA	NA	NA	NA
AZY08284.1|2251838_2253548_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY08285.1|2253557_2254805_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY09965.1|2256415_2257705_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY08286.1|2258842_2259616_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY08287.1|2260277_2261021_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08288.1|2261095_2261836_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08289.1|2262031_2262868_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08290.1|2262918_2263689_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY08291.1|2263738_2264791_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY08292.1|2264787_2265414_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY08293.1|2265410_2266457_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY08294.1|2266623_2267640_+	folate-binding protein	NA	NA	NA	NA	NA
AZY09966.1|2267738_2268689_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08295.1|2271429_2272719_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY08296.1|2272837_2273308_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY08297.1|2273318_2274527_-	flavohemoprotein	NA	NA	NA	NA	NA
AZY08298.1|2274673_2275138_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY08299.1|2275161_2276112_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08300.1|2277096_2277870_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY08301.1|2277866_2278865_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08302.1|2278949_2279726_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY08303.1|2279881_2281549_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY08304.1|2281866_2282991_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08305.1|2283117_2283741_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08306.1|2283737_2285639_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY08307.1|2285687_2286482_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY08308.1|2286494_2287496_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY08309.1|2287492_2287999_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY08310.1|2287991_2288840_-	hydrolase	NA	NA	NA	NA	NA
AZY08311.1|2288937_2289480_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08312.1|2289523_2290474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08313.1|2290629_2290956_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZY08314.1|2290952_2291237_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY08315.1|2291233_2291713_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY08316.1|2291709_2293338_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY08317.1|2293334_2293679_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY08318.1|2293678_2296612_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY08319.1|2297770_2298721_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08320.1|2298819_2299116_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08321.1|2299222_2300140_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08322.1|2300144_2300858_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY08323.1|2300871_2301843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY08324.1|2303562_2303943_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08325.1|2303946_2305134_+	MFS transporter	NA	NA	NA	NA	NA
AZY09967.1|2305572_2306295_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY08326.1|2306588_2307539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	2328330	2399484	4105345	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZY08341.1|2328330_2329281_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08342.1|2329833_2331459_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY09972.1|2331508_2332543_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY08343.1|2332545_2333892_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09973.1|2333888_2335403_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY08344.1|2335393_2336404_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08345.1|2336877_2337819_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY08346.1|2337827_2338796_-	AAA family ATPase	NA	NA	NA	NA	NA
AZY08347.1|2340335_2341304_+	transporter	NA	NA	NA	NA	NA
AZY08348.1|2341481_2342471_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY08349.1|2342517_2343276_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY08350.1|2343465_2344203_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY08351.1|2344301_2345252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08352.1|2345436_2346219_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY08353.1|2346212_2346914_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY08354.1|2347153_2347756_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08355.1|2349082_2350033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08356.1|2350029_2351586_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZY08357.1|2351578_2352352_-	oxidoreductase	NA	NA	NA	NA	NA
AZY08358.1|2352410_2353361_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08359.1|2353442_2354618_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY08360.1|2354631_2356689_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY08361.1|2356685_2357711_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY08362.1|2357722_2359012_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY08363.1|2359034_2360132_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY08364.1|2360128_2361019_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY08365.1|2361015_2363100_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY08366.1|2363131_2364301_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY08367.1|2364342_2365083_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY08368.1|2365082_2365853_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY08369.1|2366708_2367494_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY08370.1|2367520_2369605_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08371.1|2369772_2371728_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY09974.1|2372051_2372552_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY08372.1|2372650_2374177_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY09975.1|2374314_2375202_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08373.1|2375216_2376170_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY08374.1|2376221_2378312_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZY08375.1|2378327_2378714_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY08376.1|2381407_2382211_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY08377.1|2383504_2384407_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08378.1|2384471_2385248_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY08379.1|2385569_2386619_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08380.1|2386742_2388413_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY08381.1|2388417_2389212_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY08382.1|2389310_2390261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08383.1|2390280_2391186_-	pirin family protein	NA	NA	NA	NA	NA
AZY08384.1|2391263_2391962_-	pirin family protein	NA	NA	NA	NA	NA
AZY08385.1|2392121_2393066_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08386.1|2393075_2394566_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY08387.1|2394562_2395630_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY08388.1|2395693_2397106_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY08389.1|2397291_2398512_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY08390.1|2398533_2399484_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	2419837	2458444	4105345	transposase,tRNA,protease	Indivirus(25.0%)	32	NA	NA
AZY08412.1|2419837_2420788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08413.1|2421680_2422586_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY08414.1|2422597_2423725_+	lipoprotein	NA	NA	NA	NA	NA
AZY08415.1|2423813_2424428_-	fimbrial protein	NA	NA	NA	NA	NA
AZY08416.1|2425085_2426273_-	cupin	NA	NA	NA	NA	NA
AZY09976.1|2426269_2428867_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY08417.1|2429121_2429337_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY08418.1|2429792_2430347_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY08419.1|2430614_2431175_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY08420.1|2431286_2432591_+	peptidase	NA	NA	NA	NA	NA
AZY08421.1|2432599_2433550_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09977.1|2433633_2435148_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY08422.1|2435253_2436255_+	aminopeptidase	NA	NA	NA	NA	NA
AZY08423.1|2436235_2437357_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY08424.1|2437280_2437469_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08425.1|2437455_2438406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08426.1|2438402_2439029_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY09978.1|2439094_2439940_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY08427.1|2440043_2440643_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08428.1|2440639_2441404_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY08429.1|2441473_2442424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08430.1|2442522_2443131_-	recombination protein RecR	NA	NA	NA	NA	NA
AZY08431.1|2443181_2443508_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY08432.1|2443554_2445780_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY08433.1|2446447_2449852_-	nuclease	NA	NA	NA	NA	NA
AZY08434.1|2449864_2452525_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08435.1|2452728_2453931_-	MFS transporter	NA	NA	NA	NA	NA
AZY08436.1|2454617_2455730_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY08437.1|2455736_2456687_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08438.1|2456785_2457187_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY08439.1|2457259_2457838_-|protease	protease	protease	NA	NA	NA	NA
AZY09979.1|2457955_2458444_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
>prophage 20
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	2496360	2555141	4105345	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
AZY08482.1|2496360_2498310_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY08483.1|2498697_2499474_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY08484.1|2499479_2499872_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08485.1|2500293_2501244_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08486.1|2501240_2502338_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY08487.1|2502369_2503320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08488.1|2505101_2506343_-	MFS transporter	NA	NA	NA	NA	NA
AZY08489.1|2506354_2507128_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY08490.1|2507154_2508105_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08491.1|2508584_2509241_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY08492.1|2509255_2510923_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY08493.1|2510925_2511555_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08494.1|2511766_2512861_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08495.1|2513005_2513818_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY08496.1|2513821_2515525_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY08497.1|2515575_2516706_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY08498.1|2516892_2517969_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY09980.1|2518050_2518701_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY08499.1|2518715_2520149_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY08500.1|2520402_2521221_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08501.1|2521217_2521922_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY08502.1|2522821_2523937_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08503.1|2523970_2524345_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08504.1|2524367_2525525_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY08505.1|2525537_2525771_-	lipoprotein	NA	NA	NA	NA	NA
AZY08506.1|2526405_2529375_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY08507.1|2529389_2529599_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY08508.1|2529750_2530380_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08509.1|2530376_2532494_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY08510.1|2532490_2533171_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY08511.1|2533167_2533728_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY08512.1|2533734_2534832_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY08513.1|2534969_2535578_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY08514.1|2535574_2536867_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY08515.1|2536880_2537423_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY08516.1|2537432_2538269_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY08517.1|2538302_2539364_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY08518.1|2539405_2540458_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY08519.1|2540473_2540776_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08520.1|2540917_2541868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08521.1|2542046_2543741_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY08522.1|2543737_2544823_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY08523.1|2544870_2545770_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08524.1|2545780_2546425_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY08525.1|2547446_2550689_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY08526.1|2550699_2551797_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY08527.1|2552059_2553043_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY08528.1|2553141_2554092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08529.1|2554190_2555141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	2607678	2674178	4105345	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY08580.1|2607678_2608629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08581.1|2608998_2609571_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY08582.1|2609573_2610584_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY08583.1|2610576_2611077_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY08584.1|2611087_2611429_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY08585.1|2611440_2612232_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY08586.1|2612248_2612518_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY08587.1|2612540_2613329_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY09984.1|2613375_2614392_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY08588.1|2614608_2616051_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY08589.1|2616229_2617849_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY08590.1|2617969_2619790_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY08591.1|2619868_2621401_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY08592.1|2621434_2623081_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY08593.1|2623150_2624173_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY08594.1|2624190_2625324_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZY08595.1|2625326_2626016_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY08596.1|2626015_2626801_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY08597.1|2626844_2627609_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY08598.1|2627647_2629069_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY08599.1|2629134_2629839_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY08600.1|2629886_2630306_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY08601.1|2630318_2630726_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY09985.1|2630909_2631620_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY08602.1|2631746_2632037_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY08603.1|2632054_2632537_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY08604.1|2637042_2638197_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY09986.1|2638502_2639519_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY08605.1|2639765_2640554_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08606.1|2640620_2641301_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY08607.1|2641297_2642068_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY08608.1|2642166_2643117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08609.1|2643172_2644090_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY08610.1|2644100_2645279_-	mandelate racemase	NA	NA	NA	NA	NA
AZY08611.1|2645298_2646294_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY08612.1|2647882_2648491_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY08613.1|2648478_2649519_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY08614.1|2649536_2650499_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY08615.1|2650495_2651689_-	CoA transferase	NA	NA	NA	NA	NA
AZY08616.1|2651685_2652483_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY08617.1|2652508_2653495_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY08618.1|2653513_2655553_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY09987.1|2655754_2656435_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08619.1|2656448_2657360_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY08620.1|2657356_2657935_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY08621.1|2658073_2658979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08622.1|2658986_2662406_+	nuclease	NA	NA	NA	NA	NA
AZY08623.1|2662393_2664994_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY08624.1|2665949_2666582_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08625.1|2666975_2667734_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08626.1|2667730_2668933_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY08627.1|2669120_2670071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08628.1|2670978_2672124_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY09988.1|2672143_2672866_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY08629.1|2672982_2673162_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08630.1|2673227_2674178_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	2878290	2959568	4105345	transposase,tRNA	Planktothrix_phage(16.67%)	59	NA	NA
AZY08793.1|2878290_2879241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08794.1|2879237_2880140_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08795.1|2880227_2880986_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY08796.1|2880998_2882147_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY08797.1|2882187_2883615_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY08798.1|2883844_2885059_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY08799.1|2885104_2887975_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY08800.1|2890385_2890874_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY08801.1|2890999_2893696_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY08802.1|2893850_2896133_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY08803.1|2896298_2896931_+	fimbrial protein	NA	NA	NA	NA	NA
AZY08804.1|2897029_2897980_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY08805.1|2898026_2898581_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY08806.1|2898648_2899494_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY08807.1|2899563_2900532_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY08808.1|2900531_2902328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08809.1|2904227_2908154_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY08810.1|2908444_2908621_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08811.1|2908889_2912120_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY08812.1|2912401_2913229_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY08813.1|2913262_2913958_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY08814.1|2913950_2915231_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY08815.1|2915240_2916218_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10005.1|2916199_2917900_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZY08816.1|2918002_2919106_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY08817.1|2919136_2919892_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY08818.1|2919898_2921419_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY08819.1|2921461_2921764_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08820.1|2921760_2922393_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08821.1|2922471_2924337_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY08822.1|2924333_2925149_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY08823.1|2925156_2926272_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08824.1|2927176_2928055_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY08825.1|2928054_2928879_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY08826.1|2929046_2929997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08827.1|2930179_2933059_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY08828.1|2933040_2933817_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY08829.1|2933909_2935373_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY08830.1|2935369_2935741_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY08831.1|2935758_2937072_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08832.1|2937108_2937567_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY08833.1|2937679_2938630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08834.1|2938626_2939640_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY08835.1|2939779_2940766_+	homoserine kinase	NA	NA	NA	NA	NA
AZY08836.1|2940809_2941610_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08837.1|2942412_2943363_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08838.1|2943514_2944117_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08839.1|2944135_2944768_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY08840.1|2945005_2946892_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY08841.1|2946910_2947753_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY08842.1|2947749_2949108_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY08843.1|2949328_2950123_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY08844.1|2950353_2951847_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY08845.1|2952082_2954164_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY08846.1|2954358_2955399_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY08847.1|2955533_2956550_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY08848.1|2956571_2957429_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY10006.1|2957473_2958250_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY08849.1|2958617_2959568_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	2968636	3017574	4105345	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY08857.1|2968636_2969050_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY08858.1|2969090_2969408_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY08859.1|2969492_2970209_-	hypothetical protein	NA	NA	NA	NA	NA
AZY10007.1|2970472_2971894_+	siroheme synthase	NA	NA	NA	NA	NA
AZY08860.1|2971960_2974708_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY10008.1|2975040_2976057_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY10009.1|2976392_2977034_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY08861.1|2977124_2978561_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY08862.1|2978718_2979792_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY08863.1|2979788_2980925_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY08864.1|2981069_2981414_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY08865.1|2981480_2983361_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY08866.1|2983410_2984346_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY10010.1|2984678_2985695_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY08867.1|2986632_2988060_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY08868.1|2988056_2989079_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY08869.1|2989068_2989542_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY08870.1|2989667_2990570_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZY08871.1|2990566_2992210_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY10011.1|2992206_2993214_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY10012.1|2994044_2995061_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY08872.1|2995160_2995793_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY08873.1|2995801_2996191_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY08874.1|2996243_2997296_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY08875.1|2998159_2999866_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY08876.1|2999939_3000440_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY08877.1|3000454_3002512_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY08878.1|3002538_3002832_-	response regulator	NA	NA	NA	NA	NA
AZY08879.1|3002933_3003881_-	motility protein MotB	NA	NA	NA	NA	NA
AZY08880.1|3003893_3004769_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY08881.1|3004889_3005450_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY08882.1|3005484_3005808_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY08883.1|3006243_3006981_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY08884.1|3007279_3008230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08885.1|3008473_3008737_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY08886.1|3008810_3009092_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08887.1|3009108_3009969_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY08888.1|3009965_3010301_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08889.1|3010354_3011005_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY08890.1|3012685_3013630_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08891.1|3013675_3013993_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08892.1|3013995_3014934_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY08893.1|3015111_3015597_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY08894.1|3015615_3016164_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY08895.1|3016440_3017574_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	3029181	3101675	4105345	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY08904.1|3029181_3030132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08905.1|3030174_3031350_+	flagellin FliC	NA	NA	NA	NA	NA
AZY08906.1|3031571_3033362_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY08907.1|3033374_3035036_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY08908.1|3035048_3037754_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY08909.1|3038046_3039801_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY08910.1|3039797_3040424_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY08911.1|3040420_3041272_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY08912.1|3041347_3043462_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY08913.1|3043612_3044263_+	SCO family protein	NA	NA	NA	NA	NA
AZY08914.1|3044408_3044660_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY08915.1|3044729_3046112_-	multidrug transporter	NA	NA	NA	NA	NA
AZY08916.1|3046108_3049288_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY10014.1|3050095_3051013_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08917.1|3051064_3051796_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY08918.1|3051855_3052428_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY10015.1|3053936_3054953_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY08919.1|3055090_3056140_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY08920.1|3056244_3057195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08921.1|3057290_3058016_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY08922.1|3058226_3058607_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY08923.1|3058912_3059785_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY08924.1|3059792_3060173_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08925.1|3060326_3061601_-	radical SAM protein	NA	NA	NA	NA	NA
AZY10016.1|3063088_3063997_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY08926.1|3064794_3065859_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY08927.1|3067695_3068730_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY08928.1|3068919_3069561_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY08929.1|3069643_3071470_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY08930.1|3071713_3072643_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY08931.1|3072642_3073392_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY08932.1|3073463_3074378_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY08933.1|3074397_3075543_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY08934.1|3075603_3076515_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY08935.1|3076595_3077546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08936.1|3077644_3078229_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY08937.1|3078263_3079253_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY08938.1|3079249_3080191_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY08939.1|3080187_3081408_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY08940.1|3081450_3081765_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY08941.1|3081956_3082316_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY08942.1|3082317_3084048_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY08943.1|3084220_3084892_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY08944.1|3084906_3086235_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY08945.1|3086231_3087131_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY08946.1|3087217_3088303_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY08947.1|3088295_3089429_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY08948.1|3089428_3092110_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY08949.1|3092480_3093062_+	OmpA family protein	NA	NA	NA	NA	NA
AZY08950.1|3093139_3093913_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY08951.1|3093909_3094587_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY08952.1|3094802_3095984_+	MFS transporter	NA	NA	NA	NA	NA
AZY08953.1|3096460_3096718_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08954.1|3096756_3096939_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY08955.1|3096968_3097919_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY10017.1|3098048_3098441_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY08956.1|3098717_3099629_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY08957.1|3099753_3100728_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY08958.1|3100724_3101675_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	3115182	3168700	4105345	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZY08969.1|3115182_3116133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08970.1|3116245_3116497_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08971.1|3116690_3116906_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08972.1|3117002_3118121_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY08973.1|3118240_3118453_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08974.1|3118612_3118834_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08975.1|3118886_3119837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08976.1|3121013_3122384_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY08977.1|3122416_3123208_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY08978.1|3123220_3124276_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08979.1|3124301_3125177_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08980.1|3125282_3125531_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08981.1|3125565_3127020_-	carboxylase	NA	NA	NA	NA	NA
AZY08982.1|3127016_3127538_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY08983.1|3127566_3128919_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY08984.1|3129142_3132031_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY08985.1|3134175_3135477_+	phospholipase	NA	NA	NA	NA	NA
AZY08986.1|3135491_3136208_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY08987.1|3136489_3137170_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY08988.1|3137181_3137349_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08989.1|3137457_3137610_-	hypothetical protein	NA	NA	NA	NA	NA
AZY08990.1|3137697_3138357_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY08991.1|3138737_3140588_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY08992.1|3140584_3141535_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY08993.1|3142698_3144414_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY08994.1|3144424_3144916_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY08995.1|3144988_3146005_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY08996.1|3146172_3146952_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY08997.1|3146970_3147498_-	lipoprotein	NA	NA	NA	NA	NA
AZY08998.1|3147496_3147703_+	hypothetical protein	NA	NA	NA	NA	NA
AZY08999.1|3147791_3148061_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY09000.1|3148151_3150311_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY09001.1|3150431_3151151_+	lipoprotein	NA	NA	NA	NA	NA
AZY09002.1|3151147_3152098_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09003.1|3152238_3153456_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY09004.1|3153449_3154061_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY09005.1|3154694_3155672_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY09006.1|3155815_3156562_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY09007.1|3156583_3157030_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY09008.1|3157817_3160049_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY09009.1|3160071_3160872_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09010.1|3161153_3162386_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY09011.1|3162496_3163486_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY09012.1|3163516_3164905_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY09013.1|3166503_3167487_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY10019.1|3167683_3168700_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	3233158	3306320	4105345	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY09066.1|3233158_3234109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09067.1|3234105_3235125_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY09068.1|3235134_3237843_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY09069.1|3237990_3238647_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY09070.1|3238745_3239696_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09071.1|3239801_3240737_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY09072.1|3240936_3242631_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY09073.1|3242665_3243592_+	VOC family protein	NA	NA	NA	NA	NA
AZY10023.1|3243660_3244758_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09074.1|3244776_3245640_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY09075.1|3245651_3246434_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY09076.1|3246430_3247549_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY09077.1|3247545_3249078_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY09078.1|3249118_3250126_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY09079.1|3250270_3250993_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09080.1|3251008_3252031_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY09081.1|3252347_3253082_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09082.1|3253166_3254912_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY09083.1|3254908_3255661_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY09084.1|3255705_3256662_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY09085.1|3256750_3257317_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09086.1|3257324_3258185_-	aminotransferase	NA	NA	NA	NA	NA
AZY09087.1|3258214_3258958_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY09088.1|3258974_3259658_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY09089.1|3260495_3261410_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY09090.1|3261474_3262383_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09091.1|3262473_3263898_-	protein CyaE	NA	NA	NA	NA	NA
AZY09092.1|3263899_3265222_-	protein CyaD	NA	NA	NA	NA	NA
AZY09093.1|3265218_3267357_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY09094.1|3267434_3272555_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY10024.1|3272741_3272921_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09095.1|3273003_3273591_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY09096.1|3273606_3275088_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY09097.1|3275142_3276996_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09098.1|3277258_3278596_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY09099.1|3278630_3280628_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY09100.1|3280645_3282694_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY09101.1|3282824_3283691_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09102.1|3283959_3284925_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY09103.1|3285039_3286188_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY09104.1|3286612_3286924_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY09105.1|3286957_3287218_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY09106.1|3287367_3288501_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY09107.1|3288571_3289708_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY09108.1|3289873_3290668_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY09109.1|3290730_3291174_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY09110.1|3291289_3292240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09111.1|3292226_3292415_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09112.1|3292362_3292770_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY09113.1|3292842_3295038_+	DNA methylase	NA	NA	NA	NA	NA
AZY09114.1|3295259_3296210_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09115.1|3296169_3296694_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY09116.1|3296825_3297797_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10025.1|3297916_3300361_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY09117.1|3300376_3300967_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY09118.1|3301210_3302161_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09119.1|3302318_3303584_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY09120.1|3303617_3304715_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY09121.1|3305369_3306320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	3317607	3417720	4105345	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZY09132.1|3317607_3318558_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09133.1|3319289_3319667_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY09134.1|3319651_3320353_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09135.1|3320496_3321189_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY09136.1|3321188_3322292_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY09137.1|3322401_3324774_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY09138.1|3324770_3326330_+	chaperone SurA	NA	NA	NA	NA	NA
AZY09139.1|3326354_3327152_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY09140.1|3327183_3328329_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY09141.1|3328433_3329876_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY10026.1|3329878_3330967_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09142.1|3333245_3334196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09143.1|3334182_3334401_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09144.1|3335325_3335883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY09145.1|3335858_3336209_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09146.1|3336377_3337172_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY09147.1|3337168_3338218_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY09148.1|3338217_3338907_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY09149.1|3338993_3339491_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY09150.1|3339522_3340839_-	protein TolB	NA	NA	NA	NA	NA
AZY09151.1|3340855_3341830_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY09152.1|3341866_3342325_-	protein TolR	NA	NA	NA	NA	NA
AZY09153.1|3342324_3343005_-	protein TolQ	NA	NA	NA	NA	NA
AZY09154.1|3343007_3343436_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY09155.1|3343488_3345219_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY09156.1|3345284_3345857_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY09157.1|3345837_3346524_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY09158.1|3346879_3347551_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY09159.1|3347557_3347758_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09160.1|3348100_3348382_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09161.1|3348378_3348912_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY09162.1|3348893_3349445_-	lysozyme	NA	NA	NA	NA	NA
AZY09163.1|3349423_3349666_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09164.1|3349670_3350483_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09165.1|3350482_3350746_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09166.1|3350964_3351381_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09167.1|3351385_3355342_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY09168.1|3355334_3355724_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY09169.1|3355720_3356254_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY09170.1|3356321_3356681_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09171.1|3356690_3359303_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY09172.1|3359328_3359619_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY09173.1|3359636_3359966_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY09174.1|3359975_3360494_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY09175.1|3360748_3361249_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY09176.1|3361256_3361679_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09177.1|3361675_3362074_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY09178.1|3362070_3362466_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY09179.1|3362465_3362666_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09180.1|3362667_3363150_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY09181.1|3363212_3363464_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09182.1|3363473_3364121_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY09183.1|3364138_3365089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09184.1|3365517_3366120_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY09185.1|3366242_3366485_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY10027.1|3366490_3367546_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY09186.1|3367574_3368993_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY09187.1|3368995_3370273_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY09188.1|3370259_3370709_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY09189.1|3371384_3372335_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09190.1|3372352_3372574_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09191.1|3372588_3373287_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09192.1|3373279_3373600_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10028.1|3374079_3374691_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY09193.1|3374756_3374969_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09194.1|3375220_3376171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09195.1|3376269_3377343_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09196.1|3377510_3378305_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY09197.1|3378344_3378869_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY09198.1|3378861_3380604_-	sulfite reductase	NA	NA	NA	NA	NA
AZY09199.1|3380813_3381572_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY09200.1|3381574_3382282_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY09201.1|3382298_3383180_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY09202.1|3383190_3383949_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY10029.1|3383917_3384673_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09203.1|3384742_3386161_+	amidase	NA	NA	NA	NA	NA
AZY09204.1|3386182_3386833_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY09205.1|3386966_3387302_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY09206.1|3387390_3388341_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09207.1|3388417_3390238_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY09208.1|3390242_3391316_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY09209.1|3391438_3392407_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY09210.1|3392480_3393392_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY09211.1|3393410_3393983_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY09212.1|3394063_3394612_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY09213.1|3394611_3396201_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY09214.1|3396270_3396510_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY09215.1|3396550_3397582_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY09216.1|3397641_3398823_-	monooxygenase	NA	NA	NA	NA	NA
AZY09217.1|3398919_3399372_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09218.1|3399381_3400722_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY09219.1|3401038_3402076_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09220.1|3402457_3402817_+	hypothetical protein	NA	NA	NA	NA	NA
AZY10030.1|3402900_3403842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09221.1|3403916_3404867_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09222.1|3405160_3406255_+	porin	NA	NA	NA	NA	NA
AZY09223.1|3406336_3407218_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY09224.1|3407239_3408079_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY09225.1|3408154_3409672_+	peptidase	NA	NA	NA	NA	NA
AZY09226.1|3409768_3410869_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY09227.1|3410885_3411308_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY09228.1|3411330_3411543_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY09229.1|3411589_3412510_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY10031.1|3412773_3413442_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY09230.1|3413444_3413774_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY09231.1|3413980_3415414_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY09232.1|3415425_3415809_-	thioredoxin	NA	NA	NA	NA	NA
AZY09233.1|3415870_3416671_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09234.1|3416769_3417720_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	3704336	3734322	4105345	transposase,tRNA	Streptococcus_phage(12.5%)	33	NA	NA
AZY09482.1|3704336_3705287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09483.1|3705386_3706337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09484.1|3706333_3706969_-	transporter	NA	NA	NA	NA	NA
AZY09485.1|3707098_3707998_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY09486.1|3708093_3708585_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY09487.1|3708631_3709597_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY09488.1|3710730_3711972_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY09489.1|3712085_3713102_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY09490.1|3713136_3713613_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09491.1|3713755_3714664_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY09492.1|3714777_3715890_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY09493.1|3715990_3716524_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY09494.1|3716612_3717863_+	kynureninase	NA	NA	NA	NA	NA
AZY09495.1|3717964_3718477_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY09496.1|3718382_3718589_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09497.1|3718575_3719526_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09498.1|3719591_3720530_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY09499.1|3720552_3721179_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY09500.1|3721175_3721832_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY09501.1|3721828_3722431_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09502.1|3722437_3723064_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY09503.1|3723205_3723775_+	bacterioferritin	NA	NA	NA	NA	NA
AZY09504.1|3723845_3725165_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY09505.1|3725271_3725463_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY09506.1|3725714_3727004_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY09507.1|3727158_3728154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY09508.1|3728238_3728913_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09509.1|3728909_3729860_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09510.1|3729846_3730029_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09511.1|3730021_3731263_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY09512.1|3731259_3732204_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY09513.1|3732322_3733273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09514.1|3733371_3734322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	3754491	3789153	4105345	transposase,integrase	Burkholderia_phage(11.11%)	33	3751078:3751095	3794657:3794674
3751078:3751095	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY09532.1|3754491_3755442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09533.1|3755477_3755945_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY09534.1|3756178_3756556_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09535.1|3756552_3756735_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09536.1|3756738_3757725_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY09537.1|3757721_3758369_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY09538.1|3758426_3758954_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09539.1|3758987_3760175_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY09540.1|3760164_3760527_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY09541.1|3760519_3760639_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09542.1|3760639_3760840_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY09543.1|3760836_3761826_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY09544.1|3763312_3765283_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY09545.1|3765524_3765923_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09546.1|3765931_3766855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09547.1|3767312_3768263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09548.1|3768493_3770185_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY09549.1|3770233_3770506_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY09550.1|3770502_3770874_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY09551.1|3770969_3771104_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY09552.1|3771509_3772919_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY09553.1|3772915_3774031_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY09554.1|3774125_3776579_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY09555.1|3776697_3777489_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09556.1|3777608_3779036_+	amidase	NA	NA	NA	NA	NA
AZY10042.1|3779074_3780046_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY09557.1|3780464_3781628_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY09558.1|3781715_3782561_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY09559.1|3784117_3785068_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09560.1|3785622_3785997_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09561.1|3786071_3787130_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY09562.1|3787153_3788104_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09563.1|3788202_3789153_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3794657:3794674	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
>prophage 30
CP025382	Bordetella pertussis strain H877 chromosome, complete genome	4105345	4004413	4069325	4105345	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY09760.1|4004413_4004899_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09761.1|4005117_4006098_+	protein BugT	NA	NA	NA	NA	NA
AZY09762.1|4006364_4007174_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY09763.1|4007213_4007894_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY09764.1|4007887_4008346_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY09765.1|4008357_4008720_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY09766.1|4008802_4009486_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY09767.1|4009541_4009850_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY09768.1|4009868_4010183_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY09769.1|4010179_4012654_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY09770.1|4012661_4014053_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY09771.1|4014049_4014235_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY09772.1|4014213_4014915_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY09773.1|4014911_4015733_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY10054.1|4015713_4016838_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY09774.1|4016830_4017850_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY09775.1|4018055_4019090_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY10055.1|4019190_4019982_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY09776.1|4020064_4020439_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY09777.1|4020416_4021826_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY09778.1|4021818_4023201_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY09779.1|4023535_4025140_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY09780.1|4025175_4026189_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY09781.1|4026199_4027126_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY09782.1|4027516_4028467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09783.1|4028636_4029863_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY09784.1|4030062_4030929_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY09785.1|4030921_4031884_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY09786.1|4031984_4032935_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09787.1|4033033_4033984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09788.1|4034082_4035033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY09789.1|4035029_4036523_-	RND transporter	NA	NA	NA	NA	NA
AZY09790.1|4036519_4039627_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY09791.1|4039623_4042692_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY09792.1|4042688_4043939_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY09793.1|4044119_4044881_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY09794.1|4044913_4045564_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY09795.1|4045566_4046406_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY09796.1|4046646_4047390_+	hypothetical protein	NA	NA	NA	NA	NA
AZY09797.1|4047472_4047820_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY09798.1|4047917_4048760_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY09799.1|4048804_4049692_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY09800.1|4049718_4049907_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY09801.1|4050004_4051462_+	MFS transporter	NA	NA	NA	NA	NA
AZY09802.1|4051448_4052975_+	glycerol kinase	NA	NA	NA	NA	NA
AZY09803.1|4052993_4053461_-	hypothetical protein	NA	NA	NA	NA	NA
AZY09804.1|4053460_4054483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY09805.1|4054603_4055344_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY09806.1|4055398_4056499_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY09807.1|4056500_4057691_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY09808.1|4057810_4058827_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY09809.1|4059145_4059817_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY09810.1|4059813_4060722_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY09811.1|4060933_4061581_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY09812.1|4065432_4066509_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY09813.1|4066519_4067329_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY09814.1|4067418_4068192_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY09815.1|4068374_4069325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
