The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	0	122073	4101872	tRNA,transposase,protease	Planktothrix_phage(16.67%)	110	NA	NA
AZY02864.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY02865.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY02866.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY02867.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY02868.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY02869.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY02870.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY02871.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY02872.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY02873.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY02874.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY02875.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY02876.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY02877.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY06248.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY02878.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02879.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY02880.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY02881.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02882.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY02883.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02884.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY02885.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY06249.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02886.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY02887.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY02888.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02889.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY02890.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY02891.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY02892.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY02893.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY02894.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY02895.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY02896.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY02897.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY02898.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02899.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02900.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY02901.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02902.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY02903.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY02904.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02905.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY02906.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY02907.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY02908.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY02909.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY02910.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02911.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02912.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY02913.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY02914.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06250.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02915.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY02916.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY02917.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY02918.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY02919.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02920.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02921.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY02922.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY02923.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY02924.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY02925.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06251.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02926.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY02927.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06252.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02928.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY02929.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY02930.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY02931.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY02932.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY02933.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY02934.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY02935.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY02936.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY02937.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY06253.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY02938.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY02939.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02940.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY02941.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY02942.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY02943.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY02944.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02945.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY02946.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY02947.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY02948.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY02949.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY02950.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY02951.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY02952.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY02953.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY02954.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02955.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY02956.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY02957.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY02958.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY06254.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY02959.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06255.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY02960.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY02961.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY02962.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02963.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY02964.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY02965.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	164893	225404	4101872	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY02997.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02998.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02999.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZY03000.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY03001.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY03002.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY03003.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06260.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZY03004.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03005.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZY03006.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZY03007.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY03008.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY03009.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03010.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY03011.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY03012.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY03013.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY03014.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZY03015.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY06261.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY03016.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03017.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY03018.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY03019.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03020.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY03021.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY03022.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY03023.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY03024.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY03025.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03026.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZY03027.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03028.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03029.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY03030.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZY03031.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY03032.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZY03033.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY03034.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY03035.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY06262.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03036.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY03037.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY03038.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY03039.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY03040.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY03041.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY03042.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY03043.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY03044.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	265573	397544	4101872	tRNA,integrase,transposase	Klosneuvirus(10.71%)	116	308245:308262	352885:352902
AZY03077.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03078.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03079.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY03080.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY03081.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY03082.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY03083.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY03084.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY03085.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY03086.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03087.1|278399_279092_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY03088.1|279465_279966_-	SET domain-containing protein	NA	NA	NA	NA	NA
AZY03089.1|280072_280993_+	bestrophin	NA	NA	NA	NA	NA
AZY03090.1|281009_281486_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY03091.1|281579_283430_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY03092.1|283485_284244_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY06264.1|284271_285744_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY03093.1|285778_286558_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY03094.1|286570_287404_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY03095.1|287412_288186_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY03096.1|288182_289247_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY03097.1|289398_292026_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY03098.1|292089_294711_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03099.1|295638_296097_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03100.1|296375_298619_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY03101.1|298815_300840_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY03102.1|300963_301926_-	immunogenic protein	NA	NA	NA	NA	NA
AZY03103.1|302137_303277_+	alanine racemase	NA	NA	NA	NA	NA
AZY03104.1|303299_304265_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03105.1|304460_305651_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY03106.1|305664_305910_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY03107.1|305938_307960_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY06265.1|308006_309614_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
308245:308262	attL	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
AZY03108.1|309714_310884_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY03109.1|313765_314716_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03110.1|314739_315798_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY03111.1|315872_316247_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03112.1|316801_317752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03113.1|319308_320154_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY03114.1|320241_321405_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY06266.1|321823_322795_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03115.1|322833_324261_-	amidase	NA	NA	NA	NA	NA
AZY03116.1|324380_325172_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03117.1|325290_327744_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY03118.1|327838_328954_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY03119.1|328950_330360_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY03120.1|330765_330900_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY03121.1|330995_331367_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY03122.1|331363_331636_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY03123.1|331684_333376_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY03124.1|333606_334557_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03125.1|335014_335938_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03126.1|335946_336345_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03127.1|336586_338557_+	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY03128.1|340043_341033_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY03129.1|341029_341230_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY03130.1|341230_341350_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03131.1|341342_341705_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY03132.1|341694_342882_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY03133.1|342915_343443_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03134.1|343500_344148_-	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY03135.1|344144_345131_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY03136.1|345134_345317_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03137.1|345313_345691_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03138.1|345924_346392_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY03139.1|346427_347378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03140.1|347476_347719_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03141.1|347885_348527_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03142.1|348537_349488_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03143.1|349597_349993_-	RidA family protein	NA	NA	NA	NA	NA
AZY03144.1|350162_350864_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY03145.1|351127_351988_+	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY03146.1|352062_352398_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY03147.1|352538_353684_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
352885:352902	attR	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
AZY03148.1|353711_354371_-	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY03149.1|355375_355582_+	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY03150.1|355654_355816_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03151.1|355847_355979_+	entericidin	NA	NA	NA	NA	NA
AZY03152.1|356425_363328_+	autotransporter BatB	NA	NA	NA	NA	NA
AZY03153.1|363361_363961_+	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY03154.1|364233_365211_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03155.1|365224_366799_+	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY03156.1|366806_367547_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03157.1|367570_368335_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY03158.1|368379_368715_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY03159.1|368768_369698_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03160.1|369657_370608_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03161.1|370726_371671_-	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY03162.1|371667_372909_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY03163.1|373070_374021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03164.1|374017_374692_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03165.1|374776_375772_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03166.1|375926_377216_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY03167.1|377467_377659_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY03168.1|377765_379085_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY03169.1|379155_379725_-	bacterioferritin	NA	NA	NA	NA	NA
AZY03170.1|379866_380493_+	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY03171.1|380499_381102_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03172.1|381098_381755_+	HAD family hydrolase	NA	NA	NA	NA	NA
AZY03173.1|381751_382378_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY03174.1|382400_383339_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY03175.1|383404_384355_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03176.1|384341_384548_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03177.1|384453_384966_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY03178.1|385067_386318_-	kynureninase	NA	NA	NA	NA	NA
AZY03179.1|386406_386940_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY03180.1|387040_388153_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY03181.1|388266_389175_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY03182.1|389317_389794_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03183.1|389828_390845_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY03184.1|390958_392200_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY03185.1|393333_394299_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03186.1|394345_394837_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY03187.1|394932_395832_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY03188.1|395961_396597_+	transporter	NA	NA	NA	NA	NA
AZY03189.1|396593_397544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	668170	768634	4101872	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY03428.1|668170_669121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03429.1|669819_670203_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03430.1|670260_670863_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY06275.1|670880_671282_-	DoxX family protein	NA	NA	NA	NA	NA
AZY03431.1|671415_672309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03432.1|672305_672887_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY03433.1|673681_674416_+	arginyltransferase	NA	NA	NA	NA	NA
AZY03434.1|674456_675506_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY03435.1|675653_676232_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY03436.1|676618_677596_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY03437.1|677689_682084_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY03438.1|682284_683133_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03439.1|683291_684104_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY03440.1|684159_685110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03441.1|685208_686009_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03442.1|686070_686454_+	thioredoxin	NA	NA	NA	NA	NA
AZY03443.1|686465_687899_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY03444.1|688105_688435_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY06276.1|688437_689106_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY03445.1|689369_690290_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY03446.1|690336_690549_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY03447.1|690571_690994_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY03448.1|691010_692111_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY03449.1|692207_693725_-	peptidase	NA	NA	NA	NA	NA
AZY03450.1|693800_694640_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY03451.1|694661_695543_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY03452.1|695624_696719_-	porin	NA	NA	NA	NA	NA
AZY03453.1|697012_697963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06277.1|698037_698979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03454.1|699062_699422_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03455.1|699803_700841_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03456.1|701157_702498_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY03457.1|702507_702960_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03458.1|703056_704238_+	monooxygenase	NA	NA	NA	NA	NA
AZY03459.1|704297_705329_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY03460.1|705369_705609_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY03461.1|705678_707268_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY03462.1|707267_707816_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY03463.1|707896_708469_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY03464.1|708487_709399_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY03465.1|709472_710441_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY03466.1|710563_711637_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY03467.1|711641_713462_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY03468.1|713538_714489_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03469.1|714577_714913_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY03470.1|715046_715697_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY03471.1|715718_717137_-	amidase	NA	NA	NA	NA	NA
AZY03472.1|717206_717962_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06278.1|717930_718689_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY03473.1|718699_719581_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY03474.1|719597_720305_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY03475.1|720307_721066_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY03476.1|721275_723018_+	sulfite reductase	NA	NA	NA	NA	NA
AZY03477.1|723010_723535_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY03478.1|723574_724369_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY03479.1|724536_725610_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03480.1|725708_726659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03481.1|726910_727123_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06279.1|727188_727800_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY03482.1|728279_728600_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03483.1|728592_729291_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03484.1|729305_729527_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03485.1|729544_730495_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06280.1|731170_731620_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY03486.1|731606_732884_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY03487.1|732886_734305_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY06281.1|734333_735389_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY03488.1|735394_735637_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY03489.1|735759_736362_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY03490.1|736790_737741_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03491.1|737758_738406_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY03492.1|738415_738667_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03493.1|738729_739212_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY03494.1|739213_739414_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03495.1|739413_739809_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY03496.1|739805_740204_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY03497.1|740200_740623_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03498.1|740630_741131_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY03499.1|741385_741904_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY03500.1|741913_742243_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY03501.1|742260_742551_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY03502.1|742576_745189_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY03503.1|745198_745558_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03504.1|745625_746159_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY03505.1|746155_746545_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY03506.1|746537_750494_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY03507.1|750498_750915_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03508.1|751133_751397_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY03509.1|751396_752209_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03510.1|752213_752456_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03511.1|752434_752986_+	lysozyme	NA	NA	NA	NA	NA
AZY03512.1|752967_753501_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY03513.1|753497_753779_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03514.1|754121_754322_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03515.1|754328_755000_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY03516.1|755355_756042_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY03517.1|756022_756595_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY03518.1|756660_758391_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY03519.1|758443_758872_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY03520.1|758874_759555_+	protein TolQ	NA	NA	NA	NA	NA
AZY03521.1|759554_760013_+	protein TolR	NA	NA	NA	NA	NA
AZY03522.1|760049_761024_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY03523.1|761040_762357_+	protein TolB	NA	NA	NA	NA	NA
AZY03524.1|762388_762886_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY03525.1|762972_763662_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY03526.1|763661_764711_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY03527.1|764707_765502_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY03528.1|765670_766021_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03529.1|765996_766554_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03530.1|767478_767697_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03531.1|767683_768634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	795559	868721	4101872	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY03552.1|795559_796510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03553.1|797164_798262_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY03554.1|798295_799561_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY03555.1|799718_800669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03556.1|800912_801503_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY06283.1|801518_803963_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY03557.1|804082_805054_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03558.1|805185_805710_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY03559.1|805669_806620_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03560.1|806841_809037_-	DNA methylase	NA	NA	NA	NA	NA
AZY03561.1|809109_809517_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY03562.1|809639_810590_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03563.1|810705_811149_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY03564.1|811211_812006_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY03565.1|812171_813308_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY03566.1|813378_814512_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY03567.1|814661_814922_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY03568.1|814955_815267_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY03569.1|815691_816840_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY03570.1|816954_817920_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY03571.1|818188_819055_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03572.1|819185_821234_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY03573.1|821251_823249_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY03574.1|823283_824621_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY03575.1|824883_826737_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03576.1|826791_828273_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY03577.1|828288_828876_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY06284.1|828958_829138_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03578.1|829324_834445_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY03579.1|834522_836661_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY03580.1|836657_837980_+	protein CyaD	NA	NA	NA	NA	NA
AZY03581.1|837981_839406_+	protein CyaE	NA	NA	NA	NA	NA
AZY03582.1|839496_840405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03583.1|840469_841384_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY03584.1|842221_842905_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY03585.1|842921_843665_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY03586.1|843694_844555_+	aminotransferase	NA	NA	NA	NA	NA
AZY03587.1|844562_845129_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03588.1|845217_846174_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03589.1|846218_846971_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY03590.1|846967_848713_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY03591.1|848797_849532_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03592.1|849848_850871_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY03593.1|850886_851609_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03594.1|851753_852761_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY03595.1|852801_854334_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY03596.1|854330_855449_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY03597.1|855445_856228_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY03598.1|856239_857103_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY06285.1|857121_858219_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03599.1|858287_859214_-	VOC family protein	NA	NA	NA	NA	NA
AZY03600.1|859248_860943_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY03601.1|861142_862078_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY03602.1|862183_863134_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03603.1|863232_863889_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY03604.1|864036_866745_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY03605.1|866754_867774_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY03606.1|867770_868721_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	901468	950732	4101872	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZY03635.1|901468_902419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06286.1|902391_902991_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03636.1|902992_903427_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY03637.1|903423_903858_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03638.1|903841_904645_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY03639.1|904661_905477_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY03640.1|905473_906289_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY03641.1|906435_907137_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03642.1|907164_909123_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY03643.1|909205_910156_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03644.1|910376_911045_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY03645.1|911168_912275_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY03646.1|912287_915401_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY03647.1|915397_916891_+	RND transporter	NA	NA	NA	NA	NA
AZY03648.1|916905_917577_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY03649.1|917620_918115_-	azurin	NA	NA	NA	NA	NA
AZY03650.1|918255_918903_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY06287.1|919006_921055_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY03651.1|921051_923064_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY03652.1|923089_924424_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY03653.1|924532_925525_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03654.1|925591_927676_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY03655.1|927700_928672_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03656.1|928800_929802_-	peptidase M14	NA	NA	NA	NA	NA
AZY03657.1|929835_931077_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY03658.1|931157_932081_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY03659.1|932158_932983_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY06288.1|933179_934196_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY03660.1|934392_935376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03661.1|936974_938363_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY03662.1|938393_939383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03663.1|939493_940726_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY03664.1|941007_941808_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03665.1|941830_944062_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY03666.1|944849_945296_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY03667.1|945317_946064_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY03668.1|946207_947185_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY03669.1|947818_948430_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY03670.1|948423_949641_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY03671.1|949781_950732_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	960344	1025284	4101872	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY03680.1|960344_961295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03681.1|961291_963142_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY03682.1|963522_964182_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY03683.1|964269_964422_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03684.1|964530_964698_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03685.1|964709_965390_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY03686.1|965671_966388_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY03687.1|966402_967704_-	phospholipase	NA	NA	NA	NA	NA
AZY03688.1|969848_972737_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY03689.1|972960_974313_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY03690.1|974341_974863_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY03691.1|974859_976314_+	carboxylase	NA	NA	NA	NA	NA
AZY03692.1|976348_976597_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03693.1|976702_977578_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03694.1|977603_978659_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03695.1|978671_979463_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03696.1|979495_980866_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY03697.1|982042_982993_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03698.1|983045_983267_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03699.1|983426_983639_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03700.1|983758_984877_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY03701.1|984973_985189_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03702.1|985382_985634_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03703.1|985746_986697_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03704.1|986693_987077_-	ferredoxin	NA	NA	NA	NA	NA
AZY03705.1|987131_988949_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY06290.1|989095_989923_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY06291.1|989968_990949_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY03706.1|990945_991158_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03707.1|991154_992336_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY03708.1|992499_993234_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY03709.1|993235_995848_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY03710.1|995983_997897_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY03711.1|998512_998923_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY03712.1|999020_1000106_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY03713.1|1000204_1001155_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03714.1|1001151_1002126_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY03715.1|1002250_1003162_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY06292.1|1003438_1003831_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY03716.1|1003960_1004911_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03717.1|1004940_1005123_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY03718.1|1005161_1005419_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03719.1|1005895_1007077_-	MFS transporter	NA	NA	NA	NA	NA
AZY03720.1|1007292_1007970_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY03721.1|1007966_1008740_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY03722.1|1008817_1009399_-	OmpA family protein	NA	NA	NA	NA	NA
AZY03723.1|1009769_1012451_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY03724.1|1012450_1013584_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY03725.1|1013576_1014662_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY03726.1|1014748_1015648_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY03727.1|1015644_1016973_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY03728.1|1016987_1017659_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY03729.1|1017831_1019562_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY03730.1|1019563_1019923_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY03731.1|1020114_1020429_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY03732.1|1020471_1021692_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY03733.1|1021688_1022630_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY03734.1|1022626_1023616_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY03735.1|1023650_1024235_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY03736.1|1024333_1025284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	1044684	1107835	4101872	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY03751.1|1044684_1045635_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03752.1|1045739_1046789_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY06294.1|1046926_1047943_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY03753.1|1049451_1050024_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY03754.1|1050083_1050815_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY06295.1|1050866_1051784_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03755.1|1052591_1055771_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY03756.1|1055767_1057150_+	multidrug transporter	NA	NA	NA	NA	NA
AZY03757.1|1057219_1057471_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY03758.1|1057616_1058267_-	SCO family protein	NA	NA	NA	NA	NA
AZY03759.1|1058417_1060532_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY03760.1|1060607_1061459_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY03761.1|1061455_1062082_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY03762.1|1062078_1063833_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY03763.1|1064125_1066831_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY03764.1|1066843_1068505_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY03765.1|1068517_1070308_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY03766.1|1070529_1071705_-	flagellin FliC	NA	NA	NA	NA	NA
AZY03767.1|1071747_1072698_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03768.1|1072796_1073537_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY03769.1|1073731_1075768_+	transketolase	NA	NA	NA	NA	NA
AZY03770.1|1075785_1076796_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY03771.1|1076913_1078107_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY03772.1|1078136_1078910_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY03773.1|1078906_1080097_-	acetate kinase	NA	NA	NA	NA	NA
AZY03774.1|1080122_1081061_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY06296.1|1081057_1083406_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY03775.1|1083560_1084268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY03776.1|1084305_1085439_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03777.1|1085715_1086264_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY03778.1|1086282_1086768_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY03779.1|1086945_1087884_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY03780.1|1087886_1088204_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03781.1|1088249_1089194_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03782.1|1090874_1091525_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY03783.1|1091578_1091914_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03784.1|1091910_1092771_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY03785.1|1092787_1093069_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03786.1|1093142_1093406_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY03787.1|1093649_1094600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03788.1|1094898_1095636_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY03789.1|1096071_1096395_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY03790.1|1096429_1096990_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY03791.1|1097110_1097986_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY03792.1|1097998_1098946_+	motility protein MotB	NA	NA	NA	NA	NA
AZY03793.1|1099047_1099341_+	response regulator	NA	NA	NA	NA	NA
AZY03794.1|1099367_1101425_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY03795.1|1101439_1101940_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY03796.1|1102013_1103720_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY03797.1|1104583_1105636_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY03798.1|1105688_1106078_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY03799.1|1106086_1106719_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY06297.1|1106818_1107835_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	1113819	1183035	4101872	tRNA,transposase,holin	uncultured_Mediterranean_phage(25.0%)	55	NA	NA
AZY03804.1|1113819_1115247_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY06299.1|1116184_1117201_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY03805.1|1117533_1118469_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY03806.1|1118518_1120399_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY03807.1|1120465_1120810_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY03808.1|1120954_1122091_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY03809.1|1122087_1123161_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY03810.1|1123318_1124755_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY06300.1|1124845_1125487_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY06301.1|1125822_1126839_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY03811.1|1127171_1129919_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZY06302.1|1129985_1131407_-	siroheme synthase	NA	NA	NA	NA	NA
AZY03812.1|1131670_1132387_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03813.1|1132471_1132789_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY03814.1|1132829_1133243_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY03815.1|1133244_1133604_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03816.1|1133646_1135191_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY03817.1|1135274_1136105_+	transglycosylase	NA	NA	NA	NA	NA
AZY03818.1|1136139_1137294_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY03819.1|1138330_1140619_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY03820.1|1141825_1142290_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY03821.1|1142316_1143267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06303.1|1143634_1144411_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY03822.1|1144455_1145313_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY03823.1|1145334_1146351_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY03824.1|1146485_1147526_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY03825.1|1147720_1149802_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY03826.1|1150037_1151531_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY03827.1|1151761_1152556_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY03828.1|1152776_1154135_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY03829.1|1154131_1154974_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY03830.1|1154992_1156879_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY03831.1|1157116_1157749_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY03832.1|1157767_1158370_+	hypothetical protein	NA	NA	NA	NA	NA
AZY03833.1|1158521_1159472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03834.1|1160274_1161075_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03835.1|1161118_1162105_-	homoserine kinase	NA	NA	NA	NA	NA
AZY03836.1|1162244_1163258_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY03837.1|1163254_1164205_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03838.1|1164317_1164776_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY03839.1|1164812_1166126_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03840.1|1166143_1166515_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY03841.1|1166511_1167975_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY03842.1|1168067_1168844_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY03843.1|1168825_1171705_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY03844.1|1171887_1172838_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03845.1|1173005_1173830_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY03846.1|1173829_1174708_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY03847.1|1175612_1176728_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY03848.1|1176735_1177551_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY03849.1|1177547_1179413_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY03850.1|1179491_1180124_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY03851.1|1180222_1181173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03852.1|1181169_1181472_-	hypothetical protein	NA	NA	NA	NA	NA
AZY03853.1|1181514_1183035_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	1365011	1433498	4101872	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZY03994.1|1365011_1365962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY03995.1|1366730_1367369_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY06314.1|1368258_1368705_+	glutamate racemase	NA	NA	NA	NA	NA
AZY03996.1|1368786_1369488_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY03997.1|1369488_1370256_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY03998.1|1370252_1371491_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY03999.1|1371490_1372417_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY04000.1|1372519_1373635_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04001.1|1373650_1374601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04002.1|1374954_1375536_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY04003.1|1375532_1376366_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY06315.1|1376576_1377890_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY04004.1|1378066_1378948_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY04005.1|1378967_1379819_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY04006.1|1379871_1380960_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY04007.1|1381070_1382198_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06316.1|1382432_1383044_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY04008.1|1383142_1384093_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04009.1|1384314_1384692_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY06317.1|1384839_1385337_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY04010.1|1385333_1385861_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZY04011.1|1385994_1386810_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04012.1|1386822_1388004_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY04013.1|1388051_1388945_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY06318.1|1389071_1389542_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04014.1|1389667_1390495_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY04015.1|1390523_1391300_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY04016.1|1391296_1391590_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZY04017.1|1391586_1392051_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY04018.1|1392062_1392848_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY04019.1|1392873_1393374_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY04020.1|1393456_1394635_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY04021.1|1396262_1396598_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY04022.1|1396785_1398234_+	CoA transferase	NA	NA	NA	NA	NA
AZY04023.1|1398291_1398636_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY04024.1|1398742_1399282_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY04025.1|1399374_1400325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04026.1|1400311_1400794_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04027.1|1401063_1401495_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04028.1|1401676_1402081_-	DoxX family protein	NA	NA	NA	NA	NA
AZY04029.1|1403317_1403641_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04030.1|1403643_1404531_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY04031.1|1404563_1404989_-	universal stress protein	NA	NA	NA	NA	NA
AZY04032.1|1405060_1405414_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04033.1|1405653_1406160_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04034.1|1406198_1407530_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZY04035.1|1407589_1408405_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZY04036.1|1408401_1409256_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZY06319.1|1412318_1414862_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZY04037.1|1416228_1417983_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZY04038.1|1417979_1420100_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZY04039.1|1420104_1422300_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZY06320.1|1422296_1425638_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZY04040.1|1428440_1429391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04041.1|1429456_1429636_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06321.1|1429752_1430475_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY04042.1|1430494_1431640_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY04043.1|1432547_1433498_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	1840993	1889008	4101872	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
AZY04386.1|1840993_1841944_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04387.1|1842042_1844643_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY04388.1|1844749_1845754_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04389.1|1845862_1847203_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY04390.1|1847243_1848272_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04391.1|1848467_1849013_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04392.1|1849009_1849570_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY04393.1|1849668_1850619_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04394.1|1850656_1851244_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY04395.1|1851261_1851645_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY04396.1|1853004_1854297_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY04397.1|1854431_1855472_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY06340.1|1855569_1856586_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY04398.1|1856853_1857501_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY04399.1|1857626_1858385_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY06341.1|1858459_1859149_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY04400.1|1859166_1860051_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY04401.1|1860047_1860827_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY04402.1|1860853_1861531_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06342.1|1861819_1862572_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04403.1|1862690_1864091_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY04404.1|1864114_1864513_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY04405.1|1864688_1864889_+	copper chaperone	NA	NA	NA	NA	NA
AZY04406.1|1865027_1865756_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY04407.1|1865889_1867305_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY04408.1|1867308_1868172_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY04409.1|1868184_1868934_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY04410.1|1869116_1871132_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY06343.1|1871113_1871662_-	arylesterase	NA	NA	NA	NA	NA
AZY04411.1|1871738_1872458_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY04412.1|1872556_1873507_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04413.1|1873605_1874556_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04414.1|1874704_1875043_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY04415.1|1875100_1875262_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY04416.1|1875293_1875494_-	CsbD family protein	NA	NA	NA	NA	NA
AZY04417.1|1875759_1878333_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY04418.1|1878403_1880977_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY04419.1|1883503_1883992_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY04420.1|1884083_1885235_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY04421.1|1885288_1886110_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY04422.1|1886148_1887378_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY04423.1|1887506_1887947_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY04424.1|1887891_1888071_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04425.1|1888057_1889008_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	1892401	1953605	4101872	tRNA,transposase,protease	Lake_Baikal_phage(21.43%)	53	NA	NA
AZY04430.1|1892401_1895263_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY04431.1|1895252_1896218_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY04432.1|1896277_1898272_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY04433.1|1898369_1899320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04434.1|1899316_1899691_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04435.1|1899952_1901161_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY04436.1|1901157_1903458_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY04437.1|1903510_1906123_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY04438.1|1906482_1908408_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY04439.1|1908404_1909301_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY04440.1|1909307_1910447_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY04441.1|1910446_1911268_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY04442.1|1912838_1913168_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY04443.1|1913550_1914807_+	autotransporter Phg	NA	NA	NA	NA	NA
AZY04444.1|1914881_1915163_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04445.1|1915204_1915525_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04446.1|1915831_1916035_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY04447.1|1916118_1916685_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY04448.1|1917030_1917231_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY04449.1|1917342_1917921_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY04450.1|1918099_1919410_+	trigger factor	NA	NA	NA	NA	NA
AZY04451.1|1919412_1920066_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY04452.1|1920170_1921475_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY04453.1|1921663_1924117_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY04454.1|1924240_1925191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04455.1|1925418_1926642_+	CoA transferase	NA	NA	NA	NA	NA
AZY04456.1|1926707_1927679_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY04457.1|1927691_1928147_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY04458.1|1928160_1928964_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY04459.1|1928960_1929392_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04460.1|1929388_1930546_+	thiolase	NA	NA	NA	NA	NA
AZY04461.1|1930567_1931344_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY04462.1|1933508_1934225_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY04463.1|1934217_1934859_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY04464.1|1934893_1935625_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04465.1|1935642_1935855_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04466.1|1936425_1937376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04467.1|1938933_1939662_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY04468.1|1939712_1940915_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY04469.1|1940992_1943029_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY04470.1|1943281_1943773_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY04471.1|1943988_1944501_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY04472.1|1944518_1945730_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY04473.1|1945767_1946178_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY04474.1|1946179_1946503_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY04475.1|1946505_1947018_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY04476.1|1947147_1949010_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY04477.1|1949019_1949361_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY04478.1|1949360_1949555_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY04479.1|1949679_1950573_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY04480.1|1950569_1951520_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04481.1|1951644_1952454_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY04482.1|1952654_1953605_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	1981388	2033185	4101872	tRNA,transposase,protease	Klosneuvirus(22.22%)	50	NA	NA
AZY04502.1|1981388_1984013_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY04503.1|1983999_1984254_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY04504.1|1984320_1984902_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04505.1|1985205_1985466_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY04506.1|1985631_1986255_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY04507.1|1986254_1987028_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY04508.1|1987024_1988233_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY04509.1|1988258_1988732_-	RidA family protein	NA	NA	NA	NA	NA
AZY04510.1|1988805_1989756_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04511.1|1989854_1990805_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04512.1|1990903_1992253_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY04513.1|1993018_1993774_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY04514.1|1993866_1996749_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY04515.1|1997071_1997497_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY04516.1|1997524_1998673_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY04517.1|1998669_1999176_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY04518.1|1999182_2000478_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY04519.1|2000518_2001823_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY04520.1|2001824_2002463_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04521.1|2002465_2003626_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY04522.1|2003652_2005008_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY04523.1|2005011_2006082_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY04524.1|2006220_2006457_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY04525.1|2006544_2007651_+	GTPase HflX	NA	NA	NA	NA	NA
AZY04526.1|2007616_2008921_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY04527.1|2008939_2009839_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY04528.1|2010022_2011180_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY04529.1|2011244_2012552_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY04530.1|2012665_2013205_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY04531.1|2013482_2013695_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY04532.1|2013714_2015745_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY06345.1|2016544_2018713_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY04533.1|2019122_2019422_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04534.1|2019706_2020120_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY04535.1|2020079_2021030_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04536.1|2021016_2021217_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04537.1|2021229_2022315_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY04538.1|2022330_2023092_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY04539.1|2023088_2024012_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY04540.1|2024110_2024635_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY04541.1|2024643_2025387_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY04542.1|2025482_2025722_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04543.1|2025735_2025888_-	lipoprotein	NA	NA	NA	NA	NA
AZY04544.1|2025973_2027464_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY04545.1|2027555_2028494_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY04546.1|2028490_2028667_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY04547.1|2028669_2029332_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY06346.1|2030953_2031097_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY04548.1|2031093_2032068_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04549.1|2032234_2033185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2039155	2095249	4101872	transposase	uncultured_Caudovirales_phage(20.0%)	55	NA	NA
AZY04555.1|2039155_2040106_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04556.1|2041151_2043017_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY06347.1|2043274_2044795_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY04557.1|2044882_2045533_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY04558.1|2046481_2047777_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY04559.1|2047798_2048683_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06348.1|2048781_2049657_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY04560.1|2049646_2050003_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY04561.1|2050076_2051108_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY04562.1|2051237_2051417_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY04563.1|2051514_2052039_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY04564.1|2052049_2052886_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY04565.1|2052998_2053370_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY04566.1|2053366_2053918_+	ATPase	NA	NA	NA	NA	NA
AZY04567.1|2053933_2055625_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY04568.1|2055673_2056354_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04569.1|2056601_2057066_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04570.1|2057235_2058165_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY04571.1|2058177_2058825_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04572.1|2058898_2060716_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY04573.1|2060799_2061750_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04574.1|2062402_2063353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04575.1|2063371_2063719_-	GFA family protein	NA	NA	NA	NA	NA
AZY04576.1|2063747_2065187_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY04577.1|2065205_2065601_-	VOC family protein	NA	NA	NA	NA	NA
AZY04578.1|2065775_2066384_+	peptidase S16	NA	NA	NA	NA	NA
AZY04579.1|2066396_2067215_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY04580.1|2067166_2068141_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY04581.1|2068169_2069231_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04582.1|2069227_2071444_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY04583.1|2071457_2071916_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY04584.1|2072073_2072418_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04585.1|2072574_2073480_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06349.1|2073566_2074580_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY06350.1|2076559_2077576_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY04586.1|2077718_2079071_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY04587.1|2079245_2079542_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04588.1|2080679_2081630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04589.1|2082115_2082292_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04590.1|2082263_2082902_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04591.1|2082976_2083948_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY04592.1|2083951_2084806_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZY04593.1|2084824_2085646_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY04594.1|2085677_2086472_+	amidase	NA	NA	NA	NA	NA
AZY04595.1|2086520_2087126_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06351.1|2087122_2087917_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY04596.1|2088202_2089708_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZY04597.1|2089749_2090532_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZY04598.1|2090601_2091048_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04599.1|2091044_2092271_-	NnrS family protein	NA	NA	NA	NA	NA
AZY04600.1|2092263_2092668_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZY04601.1|2092827_2093130_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZY04602.1|2093126_2094077_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04603.1|2094063_2094255_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04604.1|2094298_2095249_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2343963	2405311	4101872	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZY04789.1|2343963_2344914_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04790.1|2345030_2345750_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04791.1|2345922_2346909_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04792.1|2346909_2347392_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY04793.1|2347395_2348679_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY04794.1|2348675_2349614_+	CoA ester lyase	NA	NA	NA	NA	NA
AZY04795.1|2349610_2351320_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY04796.1|2351329_2352577_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY06361.1|2354187_2355477_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY04797.1|2356614_2357388_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY04798.1|2358049_2358793_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04799.1|2358867_2359608_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04800.1|2359803_2360640_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04801.1|2360690_2361461_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY04802.1|2361510_2362563_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY04803.1|2362559_2363186_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY04804.1|2363182_2364229_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY04805.1|2364395_2365412_+	folate-binding protein	NA	NA	NA	NA	NA
AZY06362.1|2365510_2366461_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04806.1|2369201_2370491_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY04807.1|2370609_2371080_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY04808.1|2371090_2372299_-	flavohemoprotein	NA	NA	NA	NA	NA
AZY04809.1|2372445_2372910_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY04810.1|2372933_2373884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04811.1|2374868_2375642_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY04812.1|2375638_2376637_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04813.1|2376721_2377498_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY04814.1|2377653_2379321_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY04815.1|2379638_2380763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04816.1|2380889_2381513_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04817.1|2381509_2383411_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY04818.1|2383459_2384254_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY04819.1|2384266_2385268_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY04820.1|2385264_2385771_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY04821.1|2385763_2386612_-	hydrolase	NA	NA	NA	NA	NA
AZY04822.1|2386709_2387252_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04823.1|2387295_2388246_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04824.1|2388401_2388728_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZY04825.1|2388724_2389009_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY04826.1|2389005_2389485_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY04827.1|2389481_2391110_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY04828.1|2391106_2391451_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY04829.1|2391450_2394384_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY04830.1|2395542_2396493_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06363.1|2396591_2396888_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04831.1|2396994_2397912_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04832.1|2397916_2398630_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY04833.1|2398643_2399615_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY04834.1|2401334_2401715_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04835.1|2401718_2402906_+	MFS transporter	NA	NA	NA	NA	NA
AZY06364.1|2403344_2404067_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY04836.1|2404360_2405311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2426102	2497256	4101872	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZY04851.1|2426102_2427053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04852.1|2427605_2429231_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY06369.1|2429280_2430315_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY04853.1|2430317_2431664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06370.1|2431660_2433175_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY04854.1|2433165_2434176_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04855.1|2434649_2435591_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY04856.1|2435599_2436568_-	AAA family ATPase	NA	NA	NA	NA	NA
AZY04857.1|2438107_2439076_+	transporter	NA	NA	NA	NA	NA
AZY04858.1|2439253_2440243_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY04859.1|2440289_2441048_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY04860.1|2441237_2441975_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY04861.1|2442073_2443024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04862.1|2443208_2443991_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY04863.1|2443984_2444686_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY04864.1|2444925_2445528_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04865.1|2446854_2447805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04866.1|2447801_2449358_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZY04867.1|2449350_2450124_-	oxidoreductase	NA	NA	NA	NA	NA
AZY04868.1|2450182_2451133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04869.1|2451214_2452390_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY04870.1|2452403_2454461_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY04871.1|2454457_2455483_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY04872.1|2455494_2456784_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY04873.1|2456806_2457904_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY04874.1|2457900_2458791_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY04875.1|2458787_2460872_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY04876.1|2460903_2462073_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY04877.1|2462114_2462855_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY04878.1|2462854_2463625_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY04879.1|2464480_2465266_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY04880.1|2465292_2467377_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04881.1|2467544_2469500_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY06371.1|2469823_2470324_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY04882.1|2470422_2471949_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY06372.1|2472086_2472974_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04883.1|2472988_2473942_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY04884.1|2473993_2476084_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZY04885.1|2476099_2476486_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY04886.1|2479179_2479983_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY04887.1|2481276_2482179_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04888.1|2482243_2483020_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY04889.1|2483341_2484391_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04890.1|2484514_2486185_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY04891.1|2486189_2486984_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY04892.1|2487082_2488033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04893.1|2488052_2488958_-	pirin family protein	NA	NA	NA	NA	NA
AZY04894.1|2489035_2489734_-	pirin family protein	NA	NA	NA	NA	NA
AZY04895.1|2489893_2490838_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04896.1|2490847_2492338_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY04897.1|2492334_2493402_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY04898.1|2493465_2494878_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY04899.1|2495063_2496284_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY04900.1|2496305_2497256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2538196	2600043	4101872	protease,transposase,tRNA	Planktothrix_phage(14.29%)	60	NA	NA
AZY04939.1|2538196_2539147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04940.1|2539245_2539854_-	recombination protein RecR	NA	NA	NA	NA	NA
AZY04941.1|2539904_2540231_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY04942.1|2540277_2542503_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY04943.1|2543170_2546575_-	nuclease	NA	NA	NA	NA	NA
AZY04944.1|2546587_2549248_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04945.1|2549451_2550654_-	MFS transporter	NA	NA	NA	NA	NA
AZY04946.1|2551340_2552453_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY04947.1|2552459_2553410_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04948.1|2553508_2553910_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY04949.1|2553982_2554561_-|protease	protease	protease	NA	NA	NA	NA
AZY06375.1|2554678_2555167_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY04950.1|2555180_2556113_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY04951.1|2556150_2557038_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY04952.1|2557195_2558890_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY04953.1|2558906_2560163_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY04954.1|2560300_2560846_-	acyl dehydratase	NA	NA	NA	NA	NA
AZY04955.1|2560877_2562437_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY04956.1|2562565_2563318_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY04957.1|2563339_2564032_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY04958.1|2564054_2564846_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04959.1|2564872_2565778_-	agmatinase	NA	NA	NA	NA	NA
AZY04960.1|2565970_2566807_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY04961.1|2566898_2567921_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY04962.1|2568057_2569110_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY04963.1|2569114_2570305_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY04964.1|2570307_2570787_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY04965.1|2570972_2571452_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY04966.1|2571459_2571696_-	hypothetical protein	NA	NA	NA	NA	NA
AZY04967.1|2571715_2572117_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY04968.1|2572119_2572371_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY04969.1|2572425_2573307_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY04970.1|2573531_2573978_+	GFA family protein	NA	NA	NA	NA	NA
AZY04971.1|2574062_2575127_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY04972.1|2575263_2575845_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY04973.1|2576079_2577210_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY04974.1|2577387_2578614_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY04975.1|2578672_2579188_+	transporter	NA	NA	NA	NA	NA
AZY04976.1|2579210_2579537_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY04977.1|2579570_2580761_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZY04978.1|2580834_2581239_+	GFA family protein	NA	NA	NA	NA	NA
AZY04979.1|2581455_2582406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04980.1|2582504_2583275_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY04981.1|2583271_2583943_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY04982.1|2583939_2584581_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY04983.1|2584593_2585514_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY04984.1|2585674_2586835_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY04985.1|2586876_2587827_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY04986.1|2588425_2588650_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04987.1|2588814_2590509_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY04988.1|2590630_2590900_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY04989.1|2591015_2591414_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY04990.1|2591424_2592381_-	glutathione synthetase	NA	NA	NA	NA	NA
AZY04991.1|2592517_2593063_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY04992.1|2593083_2595033_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY04993.1|2595420_2596197_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY04994.1|2596202_2596595_+	hypothetical protein	NA	NA	NA	NA	NA
AZY04995.1|2597016_2597967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY04996.1|2597963_2599061_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY04997.1|2599092_2600043_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2729868	2770536	4101872	tRNA,transposase	Salmonella_phage(33.33%)	44	NA	NA
AZY05107.1|2729868_2730819_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05108.1|2730929_2731112_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05109.1|2731211_2731808_-	lipoprotein	NA	NA	NA	NA	NA
AZY05110.1|2731991_2733083_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05111.1|2733582_2733993_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05112.1|2734051_2734393_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZY05113.1|2734398_2736816_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY05114.1|2736828_2737851_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY05115.1|2737925_2738285_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY05116.1|2738300_2738498_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY05117.1|2738833_2739784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05118.1|2739770_2739959_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05119.1|2739978_2740428_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY05120.1|2740424_2741375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05121.1|2741485_2742934_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY05122.1|2743048_2743330_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05123.1|2743433_2744384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05124.1|2744628_2745342_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY05125.1|2745464_2745692_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY05126.1|2745986_2746625_-	DedA family protein	NA	NA	NA	NA	NA
AZY05127.1|2746697_2747768_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY05128.1|2747764_2748715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05129.1|2749130_2749655_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY05130.1|2749658_2749928_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05131.1|2750126_2751188_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY05132.1|2751271_2752906_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY05133.1|2752907_2753711_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY05134.1|2753739_2754699_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY05135.1|2754702_2756217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05136.1|2756253_2757258_-	peptidase M20	NA	NA	NA	NA	NA
AZY05137.1|2757265_2757514_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05138.1|2757688_2758159_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY05139.1|2758194_2758806_-	LysE family translocator	NA	NA	NA	NA	NA
AZY05140.1|2758836_2759460_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY05141.1|2759540_2761073_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY05142.1|2761107_2762349_-	MFS transporter	NA	NA	NA	NA	NA
AZY05143.1|2762392_2763424_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY05144.1|2763420_2764590_-	amine oxidase	NA	NA	NA	NA	NA
AZY05145.1|2764583_2765264_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY05146.1|2765425_2766268_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05147.1|2766430_2767402_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY05148.1|2767573_2768452_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY05149.1|2768474_2769545_-	FUSC family protein	NA	NA	NA	NA	NA
AZY05150.1|2769585_2770536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2826000	2898870	4101872	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZY05193.1|2826000_2826417_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY05194.1|2826527_2827160_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY05195.1|2827188_2827632_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY05196.1|2827653_2828745_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05197.1|2828799_2829600_-	aldolase	NA	NA	NA	NA	NA
AZY05198.1|2829735_2830356_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY05199.1|2830495_2830969_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05200.1|2832108_2833059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05201.1|2833055_2840717_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY05202.1|2840957_2845004_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY05203.1|2845316_2845898_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY05204.1|2845894_2847193_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY05205.1|2847272_2848301_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY05206.1|2848224_2848575_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05207.1|2848561_2849512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05208.1|2849508_2850459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05209.1|2850775_2851381_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY05210.1|2851434_2852748_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY05211.1|2852822_2853293_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY05212.1|2853292_2854081_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY05213.1|2854091_2855744_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY05214.1|2855831_2856782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06386.1|2857943_2858450_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY05215.1|2858446_2859211_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY05216.1|2859226_2859511_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY05217.1|2859575_2860565_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY05218.1|2860736_2861666_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY05219.1|2861637_2862324_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY05220.1|2862357_2862903_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY05221.1|2862947_2864213_+	peptidase M48	NA	NA	NA	NA	NA
AZY05222.1|2864209_2865112_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY05223.1|2866293_2867238_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY05224.1|2867332_2868850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05225.1|2868891_2870520_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY05226.1|2870627_2871509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05227.1|2874621_2874996_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY05228.1|2875020_2875359_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY05229.1|2875402_2877037_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY05230.1|2877075_2878422_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY06387.1|2878529_2879951_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY05231.1|2880020_2880605_-	nitroreductase	NA	NA	NA	NA	NA
AZY05232.1|2880707_2881658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05233.1|2881792_2882899_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05234.1|2882909_2884007_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY05235.1|2884151_2885357_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY05236.1|2885363_2885885_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY05237.1|2885881_2886373_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY05238.1|2886369_2886621_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY05239.1|2886601_2887087_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY05240.1|2887222_2890684_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05241.1|2890680_2891586_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY05242.1|2891595_2892027_-	lipoprotein	NA	NA	NA	NA	NA
AZY06388.1|2892273_2892777_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY05243.1|2892788_2894255_+	MFS transporter	NA	NA	NA	NA	NA
AZY05244.1|2894329_2895205_-	hypothetical protein	NA	NA	NA	NA	NA
AZY06389.1|2895201_2896209_-	biotin synthase	NA	NA	NA	NA	NA
AZY05245.1|2896676_2896982_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY05246.1|2897072_2897663_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06390.1|2897853_2898870_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2902013	2968823	4101872	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZY05249.1|2902013_2902964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05250.1|2903062_2904013_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05251.1|2904009_2904804_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY05252.1|2904835_2905540_-	oxidoreductase	NA	NA	NA	NA	NA
AZY05253.1|2905614_2906415_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY05254.1|2906411_2906819_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY05255.1|2906815_2907457_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY05256.1|2907449_2909471_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY05257.1|2910710_2912042_+	MFS transporter	NA	NA	NA	NA	NA
AZY05258.1|2912038_2912989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05259.1|2914695_2915001_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05260.1|2915669_2916008_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY05261.1|2920560_2921163_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05262.1|2921259_2922549_+	MFS transporter	NA	NA	NA	NA	NA
AZY05263.1|2922606_2923338_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY05264.1|2923334_2924138_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY05265.1|2924134_2925223_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY05266.1|2925219_2926149_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY05267.1|2926297_2927443_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05268.1|2927464_2928415_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05269.1|2928745_2932567_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY05270.1|2932723_2933392_-	lipoprotein	NA	NA	NA	NA	NA
AZY05271.1|2933396_2935070_-	MCE family protein	NA	NA	NA	NA	NA
AZY05272.1|2935088_2936408_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY05273.1|2936412_2938764_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY06391.1|2938783_2940952_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY05274.1|2940948_2946138_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY05275.1|2946227_2946542_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY05276.1|2946769_2947015_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY05277.1|2947109_2947628_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY05278.1|2947727_2948933_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY05279.1|2949048_2950446_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY05280.1|2950562_2951141_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY05281.1|2951213_2952605_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY05282.1|2952772_2953723_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05283.1|2954003_2954624_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY05284.1|2954620_2955034_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY05285.1|2955030_2956074_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY05286.1|2956129_2956318_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05287.1|2956327_2957092_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY05288.1|2957182_2957839_+	adenylate kinase	NA	NA	NA	NA	NA
AZY05289.1|2957930_2958689_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY05290.1|2958714_2960316_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY05291.1|2960516_2961521_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY05292.1|2961621_2961885_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY05293.1|2962002_2962779_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY05294.1|2963369_2964320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05295.1|2966703_2967816_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY05296.1|2967872_2968823_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	2999209	3039447	4101872	transposase	Planktothrix_phage(50.0%)	39	NA	NA
AZY05325.1|2999209_3000160_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05326.1|3000146_3000392_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05327.1|3000280_3001177_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY05328.1|3003454_3005680_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY05329.1|3005844_3006933_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY05330.1|3006889_3007543_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY05331.1|3007590_3008388_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05332.1|3008919_3009870_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05333.1|3009950_3011099_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY05334.1|3011155_3012106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05335.1|3012092_3012311_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05336.1|3012204_3012510_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY05337.1|3012538_3012973_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY05338.1|3012974_3014219_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY05339.1|3014215_3014926_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06393.1|3014940_3015852_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05340.1|3016221_3017172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05341.1|3017263_3017668_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05342.1|3017664_3018123_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05343.1|3018129_3019038_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06394.1|3019034_3019901_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY05344.1|3019887_3020715_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY05345.1|3020725_3021853_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY05346.1|3022930_3024169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05347.1|3024210_3025473_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05348.1|3025479_3026232_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY05349.1|3026283_3026469_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05350.1|3026744_3027209_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY05351.1|3027240_3027900_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY05352.1|3028044_3030153_+	AsmA family protein	NA	NA	NA	NA	NA
AZY05353.1|3030149_3031100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05354.1|3031203_3031824_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY06395.1|3031927_3032668_+	oxidoreductase	NA	NA	NA	NA	NA
AZY05355.1|3033802_3034927_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05356.1|3034972_3035341_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05357.1|3035582_3036533_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05358.1|3037568_3038111_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05359.1|3038315_3038510_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05360.1|3038496_3039447_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3277459	3312297	4101872	transposase,holin	Erwinia_phage(20.0%)	36	NA	NA
AZY05546.1|3277459_3278410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05547.1|3278854_3279166_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY05548.1|3279165_3279696_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05549.1|3279858_3280809_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05550.1|3281098_3281563_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY05551.1|3281577_3283083_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY05552.1|3283336_3284944_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY05553.1|3284999_3285905_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY05554.1|3286345_3287296_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05555.1|3287394_3288345_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05556.1|3288426_3289008_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY06413.1|3289432_3289738_+	RND transporter	NA	NA	NA	NA	NA
AZY05557.1|3289751_3291086_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY05558.1|3291107_3291647_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY05559.1|3291794_3292259_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY05560.1|3292401_3293517_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY05561.1|3293793_3294297_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY05562.1|3294434_3294635_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05563.1|3294625_3295348_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY05564.1|3295344_3296241_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY05565.1|3296237_3297173_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06414.1|3297178_3297802_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY05566.1|3297792_3298761_+	nickel transporter	NA	NA	NA	NA	NA
AZY05567.1|3298809_3300951_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY05568.1|3300963_3301944_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY05569.1|3301958_3302651_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY05570.1|3302677_3303589_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY05571.1|3303631_3304522_-	acyltransferase	NA	NA	NA	NA	NA
AZY05572.1|3304518_3305373_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY05573.1|3305521_3306820_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY05574.1|3306930_3307182_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY05575.1|3307261_3308302_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY05576.1|3308581_3310000_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY05577.1|3310070_3310406_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY05578.1|3310405_3311248_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY05579.1|3311346_3312297_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3324126	3375005	4101872	protease,integrase,transposase,tRNA	Planktothrix_phage(33.33%)	40	3357801:3357819	3377689:3377707
AZY05588.1|3324126_3325077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06416.1|3325389_3326868_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY05589.1|3326874_3327984_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY05590.1|3327995_3328676_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY05591.1|3328697_3329453_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06417.1|3329588_3330473_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY05592.1|3330560_3331142_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05593.1|3331234_3331357_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05594.1|3331402_3331702_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY06418.1|3331853_3332279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05595.1|3334485_3334989_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY05596.1|3335004_3335955_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05597.1|3335941_3336139_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05598.1|3336482_3337256_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05599.1|3337388_3338399_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05600.1|3338550_3340206_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY05601.1|3340260_3340602_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY05602.1|3340615_3342055_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY05603.1|3342187_3343003_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05604.1|3343021_3343210_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05605.1|3343196_3344147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05606.1|3345534_3346482_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05607.1|3346708_3347449_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05608.1|3347534_3348485_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05609.1|3349926_3351498_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY05610.1|3351830_3353684_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05611.1|3353728_3356293_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY05612.1|3356711_3357662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3357801:3357819	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY05613.1|3360527_3361022_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY05614.1|3361038_3361989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05615.1|3361975_3362176_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05616.1|3362172_3363384_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY05617.1|3363399_3366351_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY05618.1|3366352_3369472_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY06419.1|3369468_3369609_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY05619.1|3369619_3370666_-	Fic family protein	NA	NA	NA	NA	NA
AZY05620.1|3371007_3372135_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY05621.1|3372414_3373506_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY05622.1|3373578_3374361_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY05623.1|3374357_3375005_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3377689:3377707	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 24
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3423892	3477633	4101872	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY05659.1|3423892_3424843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05660.1|3425247_3425892_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY05661.1|3425916_3426501_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY05662.1|3426601_3427219_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY05663.1|3427221_3428937_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY05664.1|3428933_3429242_-	urease subunit beta	NA	NA	NA	NA	NA
AZY05665.1|3429258_3429894_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY05666.1|3429920_3430223_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY05667.1|3430323_3431178_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY05668.1|3431759_3432032_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY05669.1|3432449_3432857_-	GFA family protein	NA	NA	NA	NA	NA
AZY05670.1|3433226_3434021_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05671.1|3434121_3435357_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY05672.1|3435425_3436442_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05673.1|3436438_3437830_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY05674.1|3437826_3439023_+	MFS transporter	NA	NA	NA	NA	NA
AZY05675.1|3439019_3440558_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY05676.1|3440554_3441814_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05677.1|3443754_3444705_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05678.1|3445471_3446566_-	CoA transferase	NA	NA	NA	NA	NA
AZY05679.1|3446558_3447893_-	CoA ligase	NA	NA	NA	NA	NA
AZY05680.1|3447846_3448530_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05681.1|3448555_3449719_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY05682.1|3449715_3450717_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY05683.1|3450716_3451589_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY05684.1|3451585_3452335_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY05685.1|3452331_3453123_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY05686.1|3453119_3454259_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05687.1|3454567_3455320_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY05688.1|3455353_3456136_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY05689.1|3456139_3456529_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY05690.1|3457668_3458532_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY05691.1|3458567_3459656_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05692.1|3459652_3460603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05693.1|3460589_3460958_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05694.1|3460956_3463935_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05695.1|3464861_3465740_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY05696.1|3467688_3468639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05697.1|3468635_3469103_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY05698.1|3469145_3469916_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY05699.1|3469936_3470737_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY05700.1|3470747_3472157_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY05701.1|3472251_3473037_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY06423.1|3473276_3474293_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY05702.1|3474400_3474793_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY05703.1|3474930_3475611_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY05704.1|3475615_3476614_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05705.1|3476682_3477633_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3483788	3543087	4101872	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY05709.1|3483788_3485552_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY05710.1|3485663_3486542_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY05711.1|3486654_3487470_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY05712.1|3487473_3487725_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY06424.1|3487809_3488826_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY05713.1|3489156_3489378_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05714.1|3491738_3492656_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY05715.1|3493153_3494362_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY05716.1|3494441_3496013_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05717.1|3496130_3497066_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY05718.1|3497254_3498199_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY05719.1|3498267_3498483_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05720.1|3498766_3504484_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY05721.1|3504489_3505617_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY05722.1|3505672_3506299_+	aminotransferase	NA	NA	NA	NA	NA
AZY06425.1|3506570_3507587_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY05723.1|3507682_3508393_-	oxidoreductase	NA	NA	NA	NA	NA
AZY06426.1|3508389_3509379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05724.1|3509510_3511106_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY05725.1|3511108_3511846_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05726.1|3512001_3512874_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY05727.1|3513142_3514363_+	MFS transporter	NA	NA	NA	NA	NA
AZY05728.1|3514359_3515019_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY05729.1|3515090_3515723_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY05730.1|3515752_3516271_+	flavin reductase	NA	NA	NA	NA	NA
AZY05731.1|3516281_3517391_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY05732.1|3517437_3518292_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY05733.1|3518293_3519196_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05734.1|3520418_3521369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05735.1|3523124_3524114_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05736.1|3524289_3525078_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY05737.1|3525074_3526106_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY05738.1|3526124_3526688_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY05739.1|3526743_3528264_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY05740.1|3528527_3529232_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY05741.1|3529239_3529977_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY05742.1|3530082_3530457_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY05743.1|3530499_3531789_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05744.1|3531785_3532955_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY05745.1|3532951_3533791_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY05746.1|3533850_3534786_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY05747.1|3534798_3535749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05748.1|3535847_3536810_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY05749.1|3536841_3537201_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY05750.1|3537325_3538228_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY05751.1|3538229_3540002_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY05752.1|3540036_3540813_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY05753.1|3542136_3543087_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3558025	3616098	4101872	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZY05765.1|3558025_3558976_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05766.1|3559104_3560238_-	peptidase	NA	NA	NA	NA	NA
AZY05767.1|3560281_3561187_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY05768.1|3561189_3562890_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY05769.1|3562886_3563807_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY05770.1|3563814_3564792_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY05771.1|3564850_3565885_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY05772.1|3567859_3568096_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05773.1|3568222_3569086_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY05774.1|3569174_3569996_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY05775.1|3570075_3570813_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY05776.1|3570809_3571802_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY05777.1|3571915_3572578_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05778.1|3572622_3573771_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY05779.1|3576094_3577045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05780.1|3577385_3578336_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05781.1|3578434_3579385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05782.1|3579681_3580179_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05783.1|3580221_3581997_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY06429.1|3582043_3582871_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY05784.1|3582877_3583612_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY05785.1|3584781_3585576_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05786.1|3585865_3586456_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY05787.1|3586489_3587818_-	amidase	NA	NA	NA	NA	NA
AZY05788.1|3587892_3589038_-	transporter	NA	NA	NA	NA	NA
AZY05789.1|3589149_3590148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05790.1|3590110_3590545_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY05791.1|3592061_3592946_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY05792.1|3592942_3594148_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY05793.1|3594144_3595005_-	endonuclease	NA	NA	NA	NA	NA
AZY05794.1|3595117_3596908_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY05795.1|3596948_3597614_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY05796.1|3597614_3597923_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY06430.1|3598088_3599375_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05797.1|3600808_3601759_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05798.1|3603710_3604925_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY05799.1|3605030_3606020_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY05800.1|3606016_3606625_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY05801.1|3606637_3607267_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY05802.1|3607263_3607884_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY05803.1|3607915_3608707_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY05804.1|3609549_3610014_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY05805.1|3610032_3610959_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY05806.1|3611012_3612299_-	cytochrome c	NA	NA	NA	NA	NA
AZY05807.1|3613229_3614102_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY05808.1|3614098_3615049_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY05809.1|3615147_3616098_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3625898	3697239	4101872	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
AZY05819.1|3625898_3627173_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZY05820.1|3627895_3628846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05821.1|3628944_3629895_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05822.1|3629993_3632369_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZY05823.1|3632388_3633225_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY05824.1|3633221_3634019_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY05825.1|3634015_3636205_-	CoA-binding protein	NA	NA	NA	NA	NA
AZY05826.1|3636256_3637243_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05827.1|3637324_3639127_-	DNA alkylation response protein	NA	NA	NA	NA	NA
AZY05828.1|3639384_3641502_+	crotonase	NA	NA	NA	NA	NA
AZY05829.1|3641498_3642716_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY05830.1|3642737_3643226_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY05831.1|3643375_3645208_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
AZY06432.1|3645405_3646386_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
AZY05832.1|3646442_3647462_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05833.1|3647525_3648419_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05834.1|3648817_3649597_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY05835.1|3649596_3651738_+	CoA-binding protein	NA	NA	NA	NA	NA
AZY06433.1|3651885_3652830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05836.1|3652913_3653897_-	oxidoreductase	NA	NA	NA	NA	NA
AZY05837.1|3654261_3655536_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY05838.1|3655566_3655995_+	RidA family protein	NA	NA	NA	NA	NA
AZY05839.1|3656005_3656680_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
AZY05840.1|3656672_3657845_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
AZY05841.1|3657977_3658997_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05842.1|3659177_3660368_+	pimeloyl-CoA dehydrogenase large subunit	NA	NA	NA	NA	NA
AZY05843.1|3660381_3661512_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY05844.1|3661555_3663277_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
AZY06434.1|3663395_3664358_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05845.1|3664464_3665436_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05846.1|3666054_3666723_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY06435.1|3666719_3667127_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY05847.1|3667123_3668074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05848.1|3670518_3671253_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY05849.1|3671662_3671842_+	hypothetical protein	NA	NA	NA	NA	NA
AZY06436.1|3672032_3673346_+	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY05850.1|3673361_3674873_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05851.1|3674869_3676075_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY05852.1|3676270_3677248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05853.1|3677340_3677835_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY05854.1|3677964_3679023_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY05855.1|3679019_3680639_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY06437.1|3680598_3680907_-	GtrA family protein	NA	NA	NA	NA	NA
AZY05856.1|3680826_3681930_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY05857.1|3681926_3682382_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05858.1|3682387_3683311_-	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY05859.1|3683400_3684060_-	LysE family translocator	NA	NA	NA	NA	NA
AZY05860.1|3684056_3684971_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY05861.1|3685059_3686010_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06438.1|3686088_3687066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05862.1|3687526_3688126_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05863.1|3688194_3689187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05864.1|3689236_3690826_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY05865.1|3690866_3691763_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05866.1|3691759_3693466_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY05867.1|3693570_3694812_+	CoA transferase	NA	NA	NA	NA	NA
AZY05868.1|3694808_3695579_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY05869.1|3695627_3696329_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY05870.1|3696255_3697239_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3767061	3821256	4101872	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
AZY05937.1|3767061_3768012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05938.1|3768134_3768863_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AZY05939.1|3768869_3770138_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZY05940.1|3770134_3770968_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AZY05941.1|3771004_3771745_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY05942.1|3771864_3773040_-	dihydroorotase	NA	NA	NA	NA	NA
AZY05943.1|3773036_3773990_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AZY05944.1|3774003_3774405_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZY05945.1|3774397_3775075_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
AZY06444.1|3775090_3775255_-	rubredoxin	NA	NA	NA	NA	NA
AZY05946.1|3775371_3776220_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY05947.1|3776216_3776870_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AZY05948.1|3776886_3778170_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AZY05949.1|3778409_3780035_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AZY05950.1|3780128_3780530_-	RidA family protein	NA	NA	NA	NA	NA
AZY05951.1|3780554_3780989_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY05952.1|3780990_3782640_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AZY05953.1|3782680_3783850_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY05954.1|3783852_3784716_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY05955.1|3788079_3788784_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AZY05956.1|3788777_3789572_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AZY05957.1|3789568_3790534_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY05958.1|3790537_3791458_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY05959.1|3791554_3792718_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05960.1|3792940_3793831_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY05961.1|3793834_3794338_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05962.1|3794380_3795379_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05963.1|3795375_3796326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05964.1|3796441_3796702_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05965.1|3796893_3797844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY05966.1|3797903_3798464_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZY05967.1|3799966_3800848_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY05968.1|3800961_3802164_+	MFS transporter	NA	NA	NA	NA	NA
AZY05969.1|3802292_3804152_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZY05970.1|3804229_3805039_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY05971.1|3805109_3806111_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZY05972.1|3806142_3807003_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY05973.1|3807202_3808207_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZY05974.1|3808203_3809790_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY05975.1|3809798_3810725_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZY05976.1|3810747_3811374_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY05977.1|3811472_3812423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06445.1|3812419_3813556_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY05978.1|3813609_3814386_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY05979.1|3814410_3814869_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY05980.1|3815008_3815650_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY05981.1|3815714_3817097_+	cytochrome b	NA	NA	NA	NA	NA
AZY05982.1|3817116_3817971_+	cytochrome c1	NA	NA	NA	NA	NA
AZY05983.1|3818129_3818741_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY05984.1|3818750_3819200_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY05985.1|3819718_3819859_-	hypothetical protein	NA	NA	NA	NA	NA
AZY05986.1|3819866_3820028_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY05987.1|3820103_3820319_+	hypothetical protein	NA	NA	NA	NA	NA
AZY05988.1|3820305_3821256_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025381	Bordetella pertussis strain I896 chromosome, complete genome	4101872	3999891	4031560	4101872	transposase	Moraxella_phage(50.0%)	32	NA	NA
AZY06162.1|3999891_4000377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06163.1|4000595_4001576_+	protein BugT	NA	NA	NA	NA	NA
AZY06164.1|4001842_4002652_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY06165.1|4002691_4003372_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY06166.1|4003365_4003824_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY06167.1|4003835_4004198_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY06168.1|4004280_4004964_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY06169.1|4005019_4005328_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY06170.1|4005346_4005661_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY06171.1|4005657_4008132_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY06172.1|4008139_4009531_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY06173.1|4009527_4009713_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY06174.1|4009691_4010393_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY06175.1|4010389_4011211_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY06455.1|4011191_4012316_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY06176.1|4012308_4013328_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY06177.1|4013533_4014568_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY06456.1|4014668_4015460_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY06178.1|4015542_4015917_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY06179.1|4015894_4017304_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY06180.1|4017296_4018679_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY06181.1|4019013_4020618_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY06182.1|4020653_4021667_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY06183.1|4021677_4022604_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY06184.1|4022994_4023945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06185.1|4024114_4025341_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY06186.1|4025540_4026407_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY06187.1|4026399_4027362_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY06188.1|4027462_4028413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06189.1|4028511_4029462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06190.1|4029560_4030511_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY06191.1|4030609_4031560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
