The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	0	122073	4107721	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZX99263.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX99264.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX99265.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX99266.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX99267.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX99268.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX99269.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX99270.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX99271.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX99272.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX99273.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX99274.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX99275.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX99276.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY02665.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX99277.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99278.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX99279.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX99280.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99281.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX99282.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99283.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX99284.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY02666.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99285.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX99286.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX99287.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99288.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX99289.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX99290.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX99291.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX99292.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX99293.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX99294.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX99295.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX99296.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX99297.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99298.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99299.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX99300.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99301.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX99302.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX99303.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99304.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX99305.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX99306.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX99307.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX99308.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX99309.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX99310.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99311.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX99312.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX99313.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99314.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99315.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX99316.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX99317.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX99318.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX99319.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99320.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99321.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX99322.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX99323.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX99324.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX99325.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02667.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99326.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX99327.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02668.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99328.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX99329.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX99330.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX99331.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX99332.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX99333.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX99334.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX99335.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX99336.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX99337.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX99338.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX99339.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX99340.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99341.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX99342.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX99343.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX99344.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX99345.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99346.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX99347.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX99348.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX99349.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX99350.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX99351.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX99352.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX99353.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX99354.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX99355.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99356.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX99357.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX99358.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX99359.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY02669.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX99360.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99361.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX99362.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX99363.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX99364.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX99365.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX99366.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX99367.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	164891	225402	4107721	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX99398.1|164891_165842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99399.1|167285_168188_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99400.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
AZX99401.1|169125_170508_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX99402.1|170541_171171_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX99403.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX99404.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02675.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
AZX99405.1|174299_175250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99406.1|176365_176893_+	lipoprotein	NA	NA	NA	NA	NA
AZX99407.1|176984_177800_+	lipoprotein	NA	NA	NA	NA	NA
AZX99408.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX99409.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX99410.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99411.1|181331_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX99412.1|182423_184328_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX99413.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX99414.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX99415.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
AZX99416.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY02676.1|189528_189975_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX99417.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99418.1|190753_193024_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX99419.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX99420.1|194403_195354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99421.1|195399_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX99422.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX99423.1|197376_198477_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX99424.1|198558_198933_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX99425.1|198992_201857_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX99426.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99427.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
AZX99428.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99429.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99430.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX99431.1|207168_208218_-	cyclase	NA	NA	NA	NA	NA
AZX99432.1|208214_209039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX99433.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
AZX99434.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX99435.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX99436.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY02677.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99437.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX99438.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX99439.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX99440.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX99441.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX99442.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX99443.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX99444.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX99445.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	233335	286923	4107721	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
AZX99452.1|233335_234286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99453.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99454.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99455.1|236368_237166_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX99456.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX99457.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99458.1|240334_241378_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX99459.1|241548_243651_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99460.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99461.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX99462.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX99463.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX99464.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX99465.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX99466.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX99467.1|251622_253512_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX99468.1|253598_254237_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02678.1|254379_255624_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX99469.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX99470.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX99471.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
AZX99472.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX99473.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99474.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX99475.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
AZX99476.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99477.1|265572_266523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99478.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99479.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX99480.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX99481.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX99482.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX99483.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX99484.1|274099_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX99485.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX99486.1|277139_278090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99487.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99488.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX99489.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99490.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX99491.1|279654_280266_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX99492.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
AZX99493.1|281298_282681_-	cytochrome b	NA	NA	NA	NA	NA
AZY02679.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX99494.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX99495.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY02680.1|284839_285976_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX99496.1|285972_286923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	390856	448365	4107721	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX99595.1|390856_391807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99596.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
AZX99597.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX99598.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
AZX99599.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99600.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
AZX99601.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99602.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02686.1|400017_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX99603.1|401156_402140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99604.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99605.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX99606.1|403583_404825_-	CoA transferase	NA	NA	NA	NA	NA
AZX99607.1|404929_406636_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX99608.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99609.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX99610.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99611.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02687.1|411329_412307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99612.1|412385_413336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99613.1|413424_414339_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX99614.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
AZX99615.1|415084_416008_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX99616.1|416013_416469_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99617.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY02688.1|417488_417797_+	GtrA family protein	NA	NA	NA	NA	NA
AZX99618.1|417756_419376_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX99619.1|419372_420431_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX99620.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX99621.1|421147_422125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99622.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX99623.1|423522_425034_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02689.1|425049_426363_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX99624.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99625.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX99626.1|430321_431272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99627.1|431403_431802_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX99628.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
AZX99629.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX99630.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX99631.1|436404_436923_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX99632.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX99633.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
AZX99634.1|439209_439995_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX99635.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99636.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99637.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX99638.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX99639.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX99640.1|447414_448365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	619751	720215	4107721	tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX99791.1|619751_620702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99792.1|621400_621784_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99793.1|621841_622444_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY02695.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
AZX99794.1|622996_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99795.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX99796.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
AZX99797.1|626037_627087_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX99798.1|627234_627813_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX99799.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX99800.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX99801.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99802.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX99803.1|635740_636691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99804.1|636789_637590_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99805.1|637651_638035_+	thioredoxin	NA	NA	NA	NA	NA
AZX99806.1|638046_639480_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX99807.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY02696.1|640018_640687_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX99808.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX99809.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX99810.1|642152_642575_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX99811.1|642591_643692_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX99812.1|643788_645306_-	peptidase	NA	NA	NA	NA	NA
AZX99813.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX99814.1|646242_647124_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX99815.1|647205_648300_-	porin	NA	NA	NA	NA	NA
AZX99816.1|648593_649544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02697.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99817.1|650643_651003_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99818.1|651384_652422_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99819.1|652738_654079_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX99820.1|654088_654541_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99821.1|654637_655819_+	monooxygenase	NA	NA	NA	NA	NA
AZX99822.1|655878_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX99823.1|656950_657190_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX99824.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX99825.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX99826.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX99827.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX99828.1|661053_662022_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX99829.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX99830.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX99831.1|665119_666070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99832.1|666158_666494_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX99833.1|666627_667278_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX99834.1|667299_668718_-	amidase	NA	NA	NA	NA	NA
AZX99835.1|668787_669543_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02698.1|669511_670270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX99836.1|670280_671162_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX99837.1|671178_671886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX99838.1|671888_672647_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX99839.1|672856_674599_+	sulfite reductase	NA	NA	NA	NA	NA
AZX99840.1|674591_675116_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX99841.1|675155_675950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX99842.1|676117_677191_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99843.1|677289_678240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99844.1|678491_678704_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02699.1|678769_679381_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX99845.1|679860_680181_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99846.1|680173_680872_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99847.1|680886_681108_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99848.1|681125_682076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02700.1|682751_683201_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX99849.1|683187_684465_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX99850.1|684467_685886_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY02701.1|685914_686970_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX99851.1|686975_687218_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX99852.1|687340_687943_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX99853.1|688371_689322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX99854.1|689339_689987_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX99855.1|689996_690248_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99856.1|690310_690793_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX99857.1|690794_690995_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99858.1|690994_691390_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX99859.1|691386_691785_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX99860.1|691781_692204_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99861.1|692211_692712_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX99862.1|692966_693485_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX99863.1|693494_693824_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX99864.1|693841_694132_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX99865.1|694157_696770_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX99866.1|696779_697139_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99867.1|697206_697740_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX99868.1|697736_698126_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX99869.1|698118_702075_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX99870.1|702079_702496_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99871.1|702714_702978_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX99872.1|702977_703790_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99873.1|703794_704037_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99874.1|704015_704567_+	lysozyme	NA	NA	NA	NA	NA
AZX99875.1|704548_705082_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX99876.1|705078_705360_-	hypothetical protein	NA	NA	NA	NA	NA
AZX99877.1|705702_705903_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99878.1|705909_706581_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX99879.1|706936_707623_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX99880.1|707603_708176_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX99881.1|708241_709972_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX99882.1|710024_710453_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX99883.1|710455_711136_+	protein TolQ	NA	NA	NA	NA	NA
AZX99884.1|711135_711594_+	protein TolR	NA	NA	NA	NA	NA
AZX99885.1|711630_712605_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX99886.1|712621_713938_+	protein TolB	NA	NA	NA	NA	NA
AZX99887.1|713969_714467_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX99888.1|714553_715243_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX99889.1|715242_716292_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX99890.1|716288_717083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX99891.1|717251_717602_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99892.1|717577_718135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX99893.1|719059_719278_+	hypothetical protein	NA	NA	NA	NA	NA
AZX99894.1|719264_720215_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	853048	902312	4107721	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZX99997.1|853048_853999_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02706.1|853971_854571_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX99998.1|854572_855007_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX99999.1|855003_855438_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00001.1|855421_856225_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY00002.1|856241_857057_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY00003.1|857053_857869_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY00004.1|858015_858717_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00005.1|858744_860703_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY00006.1|860785_861736_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00007.1|861956_862625_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY00008.1|862748_863855_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY00009.1|863867_866981_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY00010.1|866977_868471_+	RND transporter	NA	NA	NA	NA	NA
AZY00011.1|868485_869157_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY00012.1|869200_869695_-	azurin	NA	NA	NA	NA	NA
AZY00013.1|869835_870483_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY02707.1|870586_872635_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY00014.1|872631_874644_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY00015.1|874669_876004_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY00016.1|876112_877105_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY00017.1|877171_879256_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY00018.1|879280_880252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY00019.1|880380_881382_-	peptidase M14	NA	NA	NA	NA	NA
AZY00020.1|881415_882657_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY00021.1|882737_883661_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY00022.1|883738_884563_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY00023.1|884759_885776_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY00024.1|885972_886956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY00025.1|888554_889943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY00026.1|889973_890963_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY00027.1|891073_892306_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY00028.1|892587_893388_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00029.1|893410_895642_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY00030.1|896429_896876_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY00031.1|896897_897644_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY00032.1|897787_898765_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY00033.1|899398_900010_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY00034.1|900003_901221_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY00035.1|901361_902312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	911924	976864	4107721	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY00044.1|911924_912875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00045.1|912871_914722_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY00046.1|915102_915762_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY00047.1|915849_916002_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00048.1|916110_916278_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00049.1|916289_916970_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY00050.1|917251_917968_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY00051.1|917982_919284_-	phospholipase	NA	NA	NA	NA	NA
AZY00052.1|921428_924317_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY00053.1|924540_925893_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY00054.1|925921_926443_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY00055.1|926439_927894_+	carboxylase	NA	NA	NA	NA	NA
AZY00056.1|927928_928177_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00057.1|928282_929158_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00058.1|929183_930239_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00059.1|930251_931043_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00060.1|931075_932446_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY00061.1|933622_934573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00062.1|934625_934847_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00063.1|935006_935219_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00064.1|935338_936457_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY00065.1|936553_936769_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00066.1|936962_937214_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00067.1|937326_938277_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00068.1|938273_938657_-	ferredoxin	NA	NA	NA	NA	NA
AZY00069.1|938711_940529_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY02709.1|940675_941503_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY00070.1|941548_942529_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY00071.1|942525_942738_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00072.1|942734_943916_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY00073.1|944079_944814_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY00074.1|944815_947428_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY00075.1|947563_949477_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY00076.1|950092_950503_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY00077.1|950600_951686_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY00078.1|951784_952735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00079.1|952731_953706_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY00080.1|953830_954742_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY02710.1|955018_955411_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY00081.1|955540_956491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00082.1|956520_956703_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY00083.1|956741_956999_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00084.1|957475_958657_-	MFS transporter	NA	NA	NA	NA	NA
AZY00085.1|958872_959550_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY00086.1|959546_960320_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY00087.1|960397_960979_-	OmpA family protein	NA	NA	NA	NA	NA
AZY00088.1|961349_964031_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY00089.1|964030_965164_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY00090.1|965156_966242_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY00091.1|966328_967228_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY00092.1|967224_968553_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY00093.1|968567_969239_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY00094.1|969411_971142_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY00095.1|971143_971503_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY00096.1|971694_972009_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY00097.1|972051_973272_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY00098.1|973268_974210_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY00099.1|974206_975196_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY00100.1|975230_975815_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY00101.1|975913_976864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	996264	1047229	4107721	transposase	Enterococcus_phage(25.0%)	41	NA	NA
AZY00116.1|996264_997215_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00117.1|997319_998369_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY00118.1|998506_999523_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY00119.1|1001031_1001604_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY00120.1|1001663_1002395_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY02712.1|1002446_1003364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00121.1|1004171_1007351_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY00122.1|1007347_1008730_+	multidrug transporter	NA	NA	NA	NA	NA
AZY00123.1|1008799_1009051_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY00124.1|1009196_1009847_-	SCO family protein	NA	NA	NA	NA	NA
AZY00125.1|1009997_1012112_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY00126.1|1012187_1013039_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY00127.1|1013035_1013662_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY00128.1|1013658_1015413_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY00129.1|1015705_1018411_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY00130.1|1018423_1020085_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY00131.1|1020097_1021888_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY00132.1|1022109_1023285_-	flagellin FliC	NA	NA	NA	NA	NA
AZY00133.1|1023327_1024278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00134.1|1024376_1025117_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY00135.1|1025311_1027348_+	transketolase	NA	NA	NA	NA	NA
AZY00136.1|1027365_1028376_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY00137.1|1028493_1029687_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY00138.1|1029716_1030490_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY00139.1|1030486_1031677_-	acetate kinase	NA	NA	NA	NA	NA
AZY00140.1|1031702_1032641_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY02713.1|1032637_1034986_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY00141.1|1035140_1035848_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY00142.1|1035885_1037019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00143.1|1037295_1037844_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY00144.1|1037862_1038348_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY00145.1|1038525_1039464_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY00146.1|1039466_1039784_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00147.1|1039829_1040774_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00148.1|1042454_1043105_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY00149.1|1043158_1043494_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00150.1|1043490_1044351_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY00151.1|1044367_1044649_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00152.1|1044722_1044986_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY00153.1|1045229_1046180_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00154.1|1046278_1047229_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
>prophage 9
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	1059447	1117110	4107721	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
AZY00167.1|1059447_1060464_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY02714.1|1061294_1062302_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY00168.1|1062298_1063942_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY00169.1|1063938_1064841_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZY00170.1|1064966_1065440_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY00171.1|1065429_1066452_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY00172.1|1066448_1067876_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY00173.1|1068813_1069830_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY00174.1|1070162_1071098_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY00175.1|1071147_1073028_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY00176.1|1073094_1073439_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY00177.1|1073583_1074720_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY00178.1|1074716_1075790_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY00179.1|1075947_1077384_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY02715.1|1077474_1078116_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY00180.1|1078451_1079468_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY02716.1|1079567_1080143_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY00181.1|1080081_1082829_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZY02717.1|1082895_1084317_-	siroheme synthase	NA	NA	NA	NA	NA
AZY00182.1|1084580_1085297_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00183.1|1085381_1085699_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY00184.1|1085739_1086153_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY00185.1|1086154_1086514_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00186.1|1086556_1088101_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY00187.1|1088184_1089015_+	transglycosylase	NA	NA	NA	NA	NA
AZY00188.1|1089049_1090204_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY00189.1|1090246_1091119_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00190.1|1091235_1093524_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY00191.1|1094730_1095195_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY00192.1|1095221_1096172_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02718.1|1096539_1097316_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY00193.1|1097360_1098218_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY00194.1|1098239_1099256_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY00195.1|1099390_1100431_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY00196.1|1100625_1102707_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY00197.1|1102942_1104436_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY00198.1|1104666_1105461_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY00199.1|1105681_1107040_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY00200.1|1107036_1107879_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY00201.1|1107897_1109784_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY00202.1|1110021_1110654_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY00203.1|1110672_1111275_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00204.1|1111426_1112377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00205.1|1113179_1113980_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00206.1|1114023_1115010_-	homoserine kinase	NA	NA	NA	NA	NA
AZY00207.1|1115149_1116163_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY00208.1|1116159_1117110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	1317181	1385668	4107721	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZY00365.1|1317181_1318132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00366.1|1318900_1319539_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY02729.1|1320428_1320875_+	glutamate racemase	NA	NA	NA	NA	NA
AZY00367.1|1320956_1321658_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY00368.1|1321658_1322426_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY00369.1|1322422_1323661_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY00370.1|1323660_1324587_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY00371.1|1324689_1325805_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY00372.1|1325820_1326771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00373.1|1327124_1327706_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY00374.1|1327702_1328536_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY02730.1|1328746_1330060_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY00375.1|1330236_1331118_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY00376.1|1331137_1331989_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY00377.1|1332041_1333130_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY00378.1|1333240_1334368_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02731.1|1334602_1335214_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY00379.1|1335312_1336263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00380.1|1336484_1336862_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY02732.1|1337009_1337507_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY00381.1|1337503_1338031_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZY00382.1|1338164_1338980_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY00383.1|1338992_1340174_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY00384.1|1340221_1341115_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY02733.1|1341241_1341712_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00385.1|1341837_1342665_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY00386.1|1342693_1343470_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY00387.1|1343466_1343760_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZY00388.1|1343756_1344221_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY00389.1|1344232_1345018_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY00390.1|1345043_1345544_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY00391.1|1345626_1346805_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY00392.1|1348432_1348768_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY00393.1|1348955_1350404_+	CoA transferase	NA	NA	NA	NA	NA
AZY00394.1|1350461_1350806_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY00395.1|1350912_1351452_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY00396.1|1351544_1352495_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00397.1|1352481_1352964_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00398.1|1353233_1353665_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00399.1|1353846_1354251_-	DoxX family protein	NA	NA	NA	NA	NA
AZY00400.1|1355487_1355811_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00401.1|1355813_1356701_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY00402.1|1356733_1357159_-	universal stress protein	NA	NA	NA	NA	NA
AZY00403.1|1357230_1357584_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00404.1|1357823_1358330_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00405.1|1358368_1359700_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZY00406.1|1359759_1360575_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZY00407.1|1360571_1361426_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZY02734.1|1364488_1367032_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZY00408.1|1368398_1370153_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZY00409.1|1370149_1372270_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZY00410.1|1372274_1374470_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZY02735.1|1374466_1377808_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZY00411.1|1380610_1381561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00412.1|1381626_1381806_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02736.1|1381922_1382645_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY00413.1|1382664_1383810_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY00414.1|1384717_1385668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	1446159	1501647	4107721	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZY00462.1|1446159_1447110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00463.1|1448311_1448758_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZY00464.1|1448750_1450226_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZY00465.1|1450222_1450978_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZY00466.1|1450970_1451981_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZY00467.1|1451970_1453647_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZY00468.1|1453959_1454292_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZY00469.1|1454305_1454701_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00470.1|1454710_1455037_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZY00471.1|1455033_1455360_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY00472.1|1455286_1456309_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY00473.1|1456305_1456686_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZY00474.1|1456703_1457132_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZY00475.1|1457139_1458513_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZY02740.1|1458653_1459031_-	flagellar protein	NA	NA	NA	NA	NA
AZY00476.1|1459293_1460601_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZY00477.1|1460661_1461492_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY00478.1|1461488_1461977_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZY00479.1|1462018_1463539_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZY02741.1|1463582_1464059_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY00480.1|1464862_1467460_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZY00481.1|1467489_1468311_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZY00482.1|1469037_1469787_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZY00483.1|1469919_1470849_+	elongation factor Ts	NA	NA	NA	NA	NA
AZY00484.1|1470946_1471663_+	UMP kinase	NA	NA	NA	NA	NA
AZY00485.1|1471677_1472238_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZY00486.1|1472275_1473169_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZY00487.1|1473188_1474046_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZY00488.1|1474042_1475242_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZY00489.1|1475281_1476616_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZY00490.1|1476668_1479005_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZY02742.1|1479130_1479694_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZY00491.1|1479702_1480794_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZY00492.1|1480865_1481321_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZY00493.1|1481321_1482116_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZY00494.1|1482112_1483294_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZY00495.1|1483280_1483886_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZY00496.1|1483882_1484656_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZY00497.1|1484667_1485495_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZY00498.1|1485656_1488020_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZY00499.1|1488087_1488807_-	GMP synthase	NA	NA	NA	NA	NA
AZY00500.1|1488930_1489356_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZY00501.1|1489390_1490341_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00502.1|1490458_1491385_+	paraslipin	NA	NA	NA	NA	NA
AZY00503.1|1491450_1492608_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY00504.1|1492588_1493056_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY00505.1|1493203_1494154_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00506.1|1494170_1494605_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY00507.1|1494594_1494945_+	RnfH family protein	NA	NA	NA	NA	NA
AZY00508.1|1495141_1496296_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY00509.1|1496292_1497465_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY00510.1|1497512_1498406_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY00511.1|1498451_1498889_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY00512.1|1498948_1499638_+	VIT family protein	NA	NA	NA	NA	NA
AZY00513.1|1499647_1500598_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00514.1|1500696_1501647_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	1794216	1842231	4107721	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
AZY00759.1|1794216_1795167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00760.1|1795265_1796216_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00761.1|1796314_1798915_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY00762.1|1799021_1800026_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY00763.1|1800134_1801475_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY00764.1|1801515_1802544_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00765.1|1802739_1803285_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00766.1|1803281_1803842_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY00767.1|1803940_1804891_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00768.1|1804928_1805516_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY00769.1|1805533_1805917_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY00770.1|1807276_1808569_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY00771.1|1808703_1809744_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY00772.1|1809841_1810858_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY00773.1|1811125_1811773_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY00774.1|1811898_1812657_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY02754.1|1812731_1813421_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY00775.1|1813438_1814323_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY00776.1|1814319_1815099_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY00777.1|1815125_1815803_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02755.1|1816091_1816844_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00778.1|1816962_1818363_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY00779.1|1818386_1818785_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY00780.1|1818960_1819161_+	copper chaperone	NA	NA	NA	NA	NA
AZY00781.1|1819299_1820028_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY00782.1|1820161_1821577_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY00783.1|1821580_1822444_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY00784.1|1822456_1823206_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY00785.1|1823388_1825404_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY02756.1|1825385_1825934_-	arylesterase	NA	NA	NA	NA	NA
AZY00786.1|1826010_1826730_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY00787.1|1826828_1827779_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00788.1|1827927_1828266_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY00789.1|1828323_1828485_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY00790.1|1828516_1828717_-	CsbD family protein	NA	NA	NA	NA	NA
AZY00791.1|1828982_1831556_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY00792.1|1831626_1834200_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY00793.1|1836726_1837215_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY00794.1|1837306_1838458_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY00795.1|1838511_1839333_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY00796.1|1839371_1840601_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY00797.1|1840729_1841170_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY00798.1|1841114_1841294_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00799.1|1841280_1842231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	1845624	1907878	4107721	tRNA,protease,transposase	Lake_Baikal_phage(21.43%)	54	NA	NA
AZY00804.1|1845624_1848486_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY00805.1|1848475_1849441_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY00806.1|1849500_1851495_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY00807.1|1851593_1852544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00808.1|1852540_1852915_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00809.1|1853176_1854385_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY00810.1|1854381_1856682_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY00811.1|1856734_1859347_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY00812.1|1859706_1861632_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY00813.1|1861628_1862525_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY00814.1|1862531_1863671_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY00815.1|1863670_1864492_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY00816.1|1866062_1866392_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY00817.1|1866774_1868031_+	autotransporter Phg	NA	NA	NA	NA	NA
AZY00818.1|1868105_1868387_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00819.1|1868428_1868749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00820.1|1869055_1869259_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY00821.1|1869342_1869909_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY00822.1|1870254_1870455_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY00823.1|1870566_1871145_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY00824.1|1871323_1872634_+	trigger factor	NA	NA	NA	NA	NA
AZY00825.1|1872636_1873290_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY00826.1|1873394_1874699_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY00827.1|1874887_1877341_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY00828.1|1877464_1878415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00829.1|1878642_1879866_+	CoA transferase	NA	NA	NA	NA	NA
AZY00830.1|1879931_1880903_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY00831.1|1880915_1881371_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY00832.1|1881384_1882188_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY00833.1|1882184_1882616_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00834.1|1882612_1883770_+	thiolase	NA	NA	NA	NA	NA
AZY00835.1|1883791_1884568_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY00836.1|1886732_1887449_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY00837.1|1887441_1888083_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY00838.1|1888117_1888849_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00839.1|1888866_1889079_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00840.1|1889649_1890600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00841.1|1892157_1892886_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY00842.1|1892936_1894139_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY00843.1|1894216_1896253_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY00844.1|1896505_1896997_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY00845.1|1897212_1897725_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY00846.1|1897742_1898954_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY00847.1|1898991_1899402_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY00848.1|1899403_1899727_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY00849.1|1899729_1900242_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY00850.1|1900371_1902234_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY00851.1|1902243_1902585_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY00852.1|1902584_1902779_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY00853.1|1902903_1903797_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY00854.1|1903793_1904744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00855.1|1904868_1905678_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY00856.1|1905878_1906829_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00857.1|1906927_1907878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	1923917	1977401	4107721	tRNA,protease,transposase	Klosneuvirus(22.22%)	46	NA	NA
AZY00869.1|1923917_1924868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00870.1|1924885_1925119_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00871.1|1925111_1926746_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY00872.1|1926742_1928098_+	amidase	NA	NA	NA	NA	NA
AZY00873.1|1929004_1930582_+	lipoprotein	NA	NA	NA	NA	NA
AZY00874.1|1930585_1931860_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02757.1|1931957_1932332_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00875.1|1934047_1935181_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZY00876.1|1935218_1935824_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY00877.1|1935820_1936639_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00878.1|1936710_1939335_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY00879.1|1939321_1939576_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY00880.1|1939642_1940224_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00881.1|1940527_1940788_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY00882.1|1940953_1941577_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY00883.1|1941576_1942350_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY00884.1|1942346_1943555_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY00885.1|1943580_1944054_-	RidA family protein	NA	NA	NA	NA	NA
AZY00886.1|1944127_1945078_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00887.1|1945176_1946127_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00888.1|1946225_1947575_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY00889.1|1948340_1949096_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY00890.1|1949188_1952071_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY00891.1|1952393_1952819_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY00892.1|1952846_1953995_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY00893.1|1953991_1954498_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY00894.1|1954504_1955800_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY00895.1|1955840_1957145_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY00896.1|1957146_1957785_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00897.1|1957787_1958948_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY00898.1|1958974_1960330_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY00899.1|1960333_1961404_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY00900.1|1961542_1961779_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY00901.1|1961866_1962973_+	GTPase HflX	NA	NA	NA	NA	NA
AZY00902.1|1962938_1964243_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY00903.1|1964261_1965161_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY00904.1|1965344_1966502_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY00905.1|1966566_1967874_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY00906.1|1967987_1968527_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY00907.1|1968804_1969017_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY00908.1|1969036_1971067_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY02758.1|1971866_1974035_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY00909.1|1974444_1974744_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00910.1|1975028_1975442_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY00911.1|1975401_1976352_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00912.1|1976450_1977401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	1988605	2038001	4107721	transposase	Klosneuvirus(16.67%)	44	NA	NA
AZY00926.1|1988605_1989556_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00927.1|1989552_1990827_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY00928.1|1990924_1992124_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY00929.1|1992120_1992774_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY00930.1|1992770_1994207_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY00931.1|1994194_1994554_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY00932.1|1995526_1996477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00933.1|1997522_1999388_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY02760.1|1999645_2001166_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY00934.1|2001253_2001904_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY00935.1|2002852_2004148_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY00936.1|2004169_2005054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02761.1|2005152_2006028_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY00937.1|2006017_2006374_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY00938.1|2006447_2007479_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY00939.1|2007608_2007788_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY00940.1|2007885_2008410_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY00941.1|2008420_2009257_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY00942.1|2009369_2009741_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY00943.1|2009737_2010289_+	ATPase	NA	NA	NA	NA	NA
AZY00944.1|2010304_2011996_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY00945.1|2012044_2012725_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00946.1|2012972_2013437_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00947.1|2013606_2014536_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY00948.1|2014548_2015196_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00949.1|2015269_2017087_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY00950.1|2017170_2018121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00951.1|2018773_2019724_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00952.1|2019742_2020090_-	GFA family protein	NA	NA	NA	NA	NA
AZY00953.1|2020118_2021558_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY00954.1|2021576_2021972_-	VOC family protein	NA	NA	NA	NA	NA
AZY00955.1|2022146_2022755_+	peptidase S16	NA	NA	NA	NA	NA
AZY00956.1|2022767_2023586_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY00957.1|2023537_2024512_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY00958.1|2024540_2025602_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00959.1|2025598_2027815_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY00960.1|2027828_2028287_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY00961.1|2028444_2028789_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00962.1|2028945_2029851_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02762.1|2029937_2030951_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY00963.1|2032930_2033947_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY00964.1|2034089_2035442_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY00965.1|2035616_2035913_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00966.1|2037050_2038001_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2049497	2113866	4107721	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZY00980.1|2049497_2050448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00981.1|2050434_2050626_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00982.1|2050669_2051620_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00983.1|2051718_2052684_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY00984.1|2052821_2053721_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY00985.1|2056315_2057803_+	hypothetical protein	NA	NA	NA	NA	NA
AZY00986.1|2057813_2059010_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY00987.1|2059082_2060402_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY00988.1|2060398_2061274_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY00989.1|2061304_2062474_-	CoA transferase	NA	NA	NA	NA	NA
AZY00990.1|2062470_2062785_-	ferredoxin	NA	NA	NA	NA	NA
AZY00991.1|2062806_2063529_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY00992.1|2063528_2064347_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY00993.1|2064351_2064879_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY00994.1|2064884_2066150_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY00995.1|2066499_2067639_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY00996.1|2067716_2068589_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY00997.1|2069459_2070410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY00998.1|2070369_2071005_-	hypothetical protein	NA	NA	NA	NA	NA
AZY00999.1|2071364_2072687_-	isocitrate lyase	NA	NA	NA	NA	NA
AZY01000.1|2072915_2073827_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY01001.1|2075251_2075824_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY01002.1|2075863_2077693_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZY01003.1|2077655_2078714_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY01004.1|2078751_2079213_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZY01005.1|2079297_2080044_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY01006.1|2081534_2084765_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY01007.1|2084831_2086163_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY01008.1|2086415_2086790_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY01009.1|2086892_2088071_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01010.1|2088081_2088672_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY02764.1|2088782_2089589_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY01011.1|2089614_2090409_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY01012.1|2091409_2092384_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01013.1|2092542_2093055_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY01014.1|2093211_2094183_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY01015.1|2095927_2096734_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY02765.1|2096730_2097867_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY01016.1|2097982_2098747_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01017.1|2098860_2099631_-	spermidine synthase	NA	NA	NA	NA	NA
AZY01018.1|2099715_2100927_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY01019.1|2100975_2101350_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY01020.1|2101450_2102713_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY01021.1|2102709_2103567_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY01022.1|2103739_2104741_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01023.1|2105192_2106143_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01024.1|2107658_2108858_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY01025.1|2109226_2109463_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY01026.1|2109526_2109694_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY01027.1|2109807_2111703_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY01028.1|2111866_2112817_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01029.1|2112915_2113866_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2300334	2361682	4107721	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZY01167.1|2300334_2301285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01168.1|2301401_2302121_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01169.1|2302293_2303280_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01170.1|2303280_2303763_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY01171.1|2303766_2305050_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY01172.1|2305046_2305985_+	CoA ester lyase	NA	NA	NA	NA	NA
AZY01173.1|2305981_2307691_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY01174.1|2307700_2308948_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY02773.1|2310558_2311848_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY01175.1|2312985_2313759_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY01176.1|2314420_2315164_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01177.1|2315238_2315979_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01178.1|2316174_2317011_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01179.1|2317061_2317832_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY01180.1|2317881_2318934_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY01181.1|2318930_2319557_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY01182.1|2319553_2320600_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY01183.1|2320766_2321783_+	folate-binding protein	NA	NA	NA	NA	NA
AZY02774.1|2321881_2322832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01184.1|2325572_2326862_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY01185.1|2326980_2327451_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY01186.1|2327461_2328670_-	flavohemoprotein	NA	NA	NA	NA	NA
AZY01187.1|2328816_2329281_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY01188.1|2329304_2330255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01189.1|2331239_2332013_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY01190.1|2332009_2333008_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01191.1|2333092_2333869_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY01192.1|2334024_2335692_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY01193.1|2336009_2337134_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01194.1|2337260_2337884_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01195.1|2337880_2339782_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY01196.1|2339830_2340625_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY01197.1|2340637_2341639_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY01198.1|2341635_2342142_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY01199.1|2342134_2342983_-	hydrolase	NA	NA	NA	NA	NA
AZY01200.1|2343080_2343623_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01201.1|2343666_2344617_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01202.1|2344772_2345099_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZY01203.1|2345095_2345380_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY01204.1|2345376_2345856_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY01205.1|2345852_2347481_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY01206.1|2347477_2347822_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY01207.1|2347821_2350755_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY01208.1|2351913_2352864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02775.1|2352962_2353259_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01209.1|2353365_2354283_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01210.1|2354287_2355001_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY01211.1|2355014_2355986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY01212.1|2357705_2358086_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01213.1|2358089_2359277_+	MFS transporter	NA	NA	NA	NA	NA
AZY02776.1|2359715_2360438_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY01214.1|2360731_2361682_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2382473	2453627	4107721	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZY01229.1|2382473_2383424_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01230.1|2383976_2385602_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY02781.1|2385651_2386686_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY01231.1|2386688_2388035_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02782.1|2388031_2389546_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY01232.1|2389536_2390547_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01233.1|2391020_2391962_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY01234.1|2391970_2392939_-	AAA family ATPase	NA	NA	NA	NA	NA
AZY01235.1|2394478_2395447_+	transporter	NA	NA	NA	NA	NA
AZY01236.1|2395624_2396614_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY01237.1|2396660_2397419_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY01238.1|2397608_2398346_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY01239.1|2398444_2399395_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01240.1|2399579_2400362_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY01241.1|2400355_2401057_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY01242.1|2401296_2401899_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01243.1|2403225_2404176_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01244.1|2404172_2405729_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZY01245.1|2405721_2406495_-	oxidoreductase	NA	NA	NA	NA	NA
AZY01246.1|2406553_2407504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01247.1|2407585_2408761_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY01248.1|2408774_2410832_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY01249.1|2410828_2411854_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY01250.1|2411865_2413155_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY01251.1|2413177_2414275_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY01252.1|2414271_2415162_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY01253.1|2415158_2417243_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY01254.1|2417274_2418444_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY01255.1|2418485_2419226_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY01256.1|2419225_2419996_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY01257.1|2420851_2421637_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY01258.1|2421663_2423748_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01259.1|2423915_2425871_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY02783.1|2426194_2426695_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY01260.1|2426793_2428320_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY02784.1|2428457_2429345_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01261.1|2429359_2430313_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY01262.1|2430364_2432455_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZY01263.1|2432470_2432857_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY01264.1|2435550_2436354_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY01265.1|2437647_2438550_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01266.1|2438614_2439391_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY01267.1|2439712_2440762_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01268.1|2440885_2442556_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY01269.1|2442560_2443355_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY01270.1|2443453_2444404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01271.1|2444423_2445329_-	pirin family protein	NA	NA	NA	NA	NA
AZY01272.1|2445406_2446105_-	pirin family protein	NA	NA	NA	NA	NA
AZY01273.1|2446264_2447209_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01274.1|2447218_2448709_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY01275.1|2448705_2449773_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY01276.1|2449836_2451249_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY01277.1|2451434_2452655_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY01278.1|2452676_2453627_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2494567	2556414	4107721	protease,transposase,tRNA	Planktothrix_phage(14.29%)	60	NA	NA
AZY01317.1|2494567_2495518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01318.1|2495616_2496225_-	recombination protein RecR	NA	NA	NA	NA	NA
AZY01319.1|2496275_2496602_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY01320.1|2496648_2498874_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY01321.1|2499541_2502946_-	nuclease	NA	NA	NA	NA	NA
AZY01322.1|2502958_2505619_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01323.1|2505822_2507025_-	MFS transporter	NA	NA	NA	NA	NA
AZY01324.1|2507711_2508824_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY01325.1|2508830_2509781_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01326.1|2509879_2510281_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY01327.1|2510353_2510932_-|protease	protease	protease	NA	NA	NA	NA
AZY02787.1|2511049_2511538_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY01328.1|2511551_2512484_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY01329.1|2512521_2513409_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY01330.1|2513566_2515261_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY01331.1|2515277_2516534_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY01332.1|2516671_2517217_-	acyl dehydratase	NA	NA	NA	NA	NA
AZY01333.1|2517248_2518808_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY01334.1|2518936_2519689_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY01335.1|2519710_2520403_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY01336.1|2520425_2521217_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01337.1|2521243_2522149_-	agmatinase	NA	NA	NA	NA	NA
AZY01338.1|2522341_2523178_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01339.1|2523269_2524292_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY01340.1|2524428_2525481_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY01341.1|2525485_2526676_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY01342.1|2526678_2527158_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY01343.1|2527343_2527823_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY01344.1|2527830_2528067_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01345.1|2528086_2528488_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY01346.1|2528490_2528742_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY01347.1|2528796_2529678_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY01348.1|2529902_2530349_+	GFA family protein	NA	NA	NA	NA	NA
AZY01349.1|2530433_2531498_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY01350.1|2531634_2532216_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY01351.1|2532450_2533581_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY01352.1|2533758_2534985_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY01353.1|2535043_2535559_+	transporter	NA	NA	NA	NA	NA
AZY01354.1|2535581_2535908_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY01355.1|2535941_2537132_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZY01356.1|2537205_2537610_+	GFA family protein	NA	NA	NA	NA	NA
AZY01357.1|2537826_2538777_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01358.1|2538875_2539646_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY01359.1|2539642_2540314_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY01360.1|2540310_2540952_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY01361.1|2540964_2541885_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY01362.1|2542045_2543206_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01363.1|2543247_2544198_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY01364.1|2544796_2545021_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01365.1|2545185_2546880_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY01366.1|2547001_2547271_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY01367.1|2547386_2547785_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY01368.1|2547795_2548752_-	glutathione synthetase	NA	NA	NA	NA	NA
AZY01369.1|2548888_2549434_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY01370.1|2549454_2551404_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY01371.1|2551791_2552568_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY01372.1|2552573_2552966_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01373.1|2553387_2554338_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01374.1|2554334_2555432_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY01375.1|2555463_2556414_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2686244	2731974	4107721	tRNA,transposase	Salmonella_phage(33.33%)	46	NA	NA
AZY01485.1|2686244_2687195_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01486.1|2687305_2687488_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01487.1|2687587_2688184_-	lipoprotein	NA	NA	NA	NA	NA
AZY01488.1|2688367_2689459_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01489.1|2689958_2690369_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01490.1|2690427_2690769_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZY01491.1|2690774_2693192_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY01492.1|2693204_2694227_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY01493.1|2694301_2694661_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY01494.1|2694676_2694874_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY01495.1|2695209_2696160_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01496.1|2696146_2696335_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01497.1|2696354_2696804_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY01498.1|2696800_2697751_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01499.1|2697861_2699310_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY01500.1|2699424_2699706_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01501.1|2699809_2700760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01502.1|2701004_2701718_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY01503.1|2701840_2702068_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY01504.1|2702362_2703001_-	DedA family protein	NA	NA	NA	NA	NA
AZY01505.1|2703073_2704144_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY01506.1|2705505_2706030_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY01507.1|2706033_2706303_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01508.1|2706501_2707563_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY01509.1|2707646_2709281_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY01510.1|2709282_2710086_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY01511.1|2710114_2711074_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY01512.1|2711077_2712592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01513.1|2712628_2713633_-	peptidase M20	NA	NA	NA	NA	NA
AZY01514.1|2714064_2714535_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY01515.1|2714570_2715182_-	LysE family translocator	NA	NA	NA	NA	NA
AZY01516.1|2715212_2715836_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY01517.1|2715916_2717449_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY01518.1|2717483_2718725_-	MFS transporter	NA	NA	NA	NA	NA
AZY01519.1|2718768_2719800_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY01520.1|2719796_2720966_-	amine oxidase	NA	NA	NA	NA	NA
AZY01521.1|2720959_2721640_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY01522.1|2721801_2722644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01523.1|2722806_2723778_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY01524.1|2723949_2724828_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY01525.1|2724850_2725921_-	FUSC family protein	NA	NA	NA	NA	NA
AZY01526.1|2725961_2726912_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01527.1|2726898_2727084_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01528.1|2727204_2728563_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY01529.1|2728674_2730402_+	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY01530.1|2731023_2731974_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2782377	2856295	4107721	tRNA,transposase	Moraxella_phage(16.67%)	60	NA	NA
AZY01570.1|2782377_2782794_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY01571.1|2782904_2783537_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY01572.1|2783565_2784009_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY01573.1|2784030_2785122_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01574.1|2785176_2785977_-	aldolase	NA	NA	NA	NA	NA
AZY01575.1|2786112_2786733_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY01576.1|2786872_2787346_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01577.1|2788485_2789436_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01578.1|2789432_2797094_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY01579.1|2797334_2801381_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY01580.1|2801693_2802275_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY01581.1|2802271_2803570_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY01582.1|2803649_2804678_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY01583.1|2804601_2804952_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01584.1|2805884_2806835_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01585.1|2806921_2807872_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01586.1|2807858_2808053_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01587.1|2808200_2808806_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY01588.1|2808859_2810173_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY01589.1|2810247_2810718_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY01590.1|2810717_2811506_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY01591.1|2811516_2813169_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY01592.1|2813256_2814207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02798.1|2815368_2815875_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY01593.1|2815871_2816636_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY01594.1|2816651_2816936_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY01595.1|2817000_2817990_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY01596.1|2818161_2819091_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY01597.1|2819062_2819749_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY01598.1|2819782_2820328_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY01599.1|2820372_2821638_+	peptidase M48	NA	NA	NA	NA	NA
AZY01600.1|2821634_2822537_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY01601.1|2823718_2824663_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY01602.1|2824757_2826275_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01603.1|2826316_2827945_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY01604.1|2828052_2828934_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01605.1|2832046_2832421_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY01606.1|2832445_2832784_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY01607.1|2832827_2834462_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY01608.1|2834500_2835847_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY02799.1|2835954_2837376_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY01609.1|2837445_2838030_-	nitroreductase	NA	NA	NA	NA	NA
AZY01610.1|2838132_2839083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01611.1|2839217_2840324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01612.1|2840334_2841432_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY01613.1|2841576_2842782_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY01614.1|2842788_2843310_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY01615.1|2843306_2843798_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY01616.1|2843794_2844046_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY01617.1|2844026_2844512_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY01618.1|2844647_2848109_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01619.1|2848105_2849011_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY01620.1|2849020_2849452_-	lipoprotein	NA	NA	NA	NA	NA
AZY02800.1|2849698_2850202_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY01621.1|2850213_2851680_+	MFS transporter	NA	NA	NA	NA	NA
AZY01622.1|2851754_2852630_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02801.1|2852626_2853634_-	biotin synthase	NA	NA	NA	NA	NA
AZY01623.1|2854101_2854407_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY01624.1|2854497_2855088_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01625.1|2855278_2856295_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2859438	2926249	4107721	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZY01628.1|2859438_2860389_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01629.1|2860487_2861438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01630.1|2861434_2862229_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY01631.1|2862260_2862965_-	oxidoreductase	NA	NA	NA	NA	NA
AZY01632.1|2863039_2863840_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY01633.1|2863836_2864244_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY01634.1|2864240_2864882_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY01635.1|2864874_2866896_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY01636.1|2868135_2869467_+	MFS transporter	NA	NA	NA	NA	NA
AZY01637.1|2869463_2870414_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01638.1|2872120_2872426_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01639.1|2873094_2873433_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY01640.1|2877986_2878589_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01641.1|2878685_2879975_+	MFS transporter	NA	NA	NA	NA	NA
AZY01642.1|2880032_2880764_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY01643.1|2880760_2881564_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY01644.1|2881560_2882649_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY01645.1|2882645_2883575_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY01646.1|2883723_2884869_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01647.1|2884890_2885841_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01648.1|2886171_2889993_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY01649.1|2890149_2890818_-	lipoprotein	NA	NA	NA	NA	NA
AZY01650.1|2890822_2892496_-	MCE family protein	NA	NA	NA	NA	NA
AZY01651.1|2892514_2893834_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY01652.1|2893838_2896190_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY02802.1|2896209_2898378_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY01653.1|2898374_2903564_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY01654.1|2903653_2903968_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY01655.1|2904195_2904441_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY01656.1|2904535_2905054_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY01657.1|2905153_2906359_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY01658.1|2906474_2907872_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY01659.1|2907988_2908567_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY01660.1|2908639_2910031_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY01661.1|2910198_2911149_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01662.1|2911429_2912050_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY01663.1|2912046_2912460_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY01664.1|2912456_2913500_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY01665.1|2913555_2913744_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01666.1|2913753_2914518_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY01667.1|2914608_2915265_+	adenylate kinase	NA	NA	NA	NA	NA
AZY01668.1|2915356_2916115_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY01669.1|2916140_2917742_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY01670.1|2917942_2918947_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY01671.1|2919047_2919311_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY01672.1|2919428_2920205_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY01673.1|2920795_2921746_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01674.1|2924129_2925242_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY01675.1|2925298_2926249_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	2956635	2995824	4107721	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZY01704.1|2956635_2957586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01705.1|2957572_2957818_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01706.1|2957706_2958603_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY01707.1|2960880_2963106_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY01708.1|2963270_2964359_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY01709.1|2964315_2964969_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY01710.1|2965016_2965814_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01711.1|2966345_2967296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01712.1|2967376_2968525_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY01713.1|2968581_2969532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01714.1|2969518_2969737_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01715.1|2969630_2969936_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY01716.1|2969964_2970399_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY01717.1|2970400_2971645_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY01718.1|2971641_2972352_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02804.1|2972366_2973278_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY01719.1|2973640_2974045_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01720.1|2974041_2974500_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01721.1|2974506_2975415_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02805.1|2975411_2976278_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY01722.1|2976264_2977092_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY01723.1|2977102_2978230_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY01724.1|2979307_2980546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01725.1|2980587_2981850_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01726.1|2981856_2982609_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY01727.1|2982660_2982846_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02806.1|2983121_2983586_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY01728.1|2983617_2984277_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY01729.1|2984421_2986530_+	AsmA family protein	NA	NA	NA	NA	NA
AZY01730.1|2986526_2987477_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01731.1|2987580_2988201_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02807.1|2988304_2989045_+	oxidoreductase	NA	NA	NA	NA	NA
AZY01732.1|2990179_2991304_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01733.1|2991349_2991718_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01734.1|2991959_2992910_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01735.1|2993945_2994488_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01736.1|2994692_2994887_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01737.1|2994873_2995824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	3184744	3245773	4107721	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZY01888.1|3184744_3185695_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01889.1|3185703_3186252_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZY01890.1|3186248_3186857_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY01891.1|3187039_3187510_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY01892.1|3187516_3188776_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY01893.1|3188828_3189641_-	oxidoreductase	NA	NA	NA	NA	NA
AZY01894.1|3189755_3190310_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY01895.1|3190319_3191309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY01896.1|3191488_3192208_-	VOC family protein	NA	NA	NA	NA	NA
AZY01897.1|3192224_3194960_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZY01898.1|3195139_3196126_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZY01899.1|3196167_3196662_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZY01900.1|3196773_3197697_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZY01901.1|3197925_3199110_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZY01902.1|3199298_3200525_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZY01903.1|3200529_3201351_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZY01904.1|3201363_3202314_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZY01905.1|3202310_3203717_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZY01906.1|3203713_3204787_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZY01907.1|3204783_3205977_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZY01908.1|3205973_3207506_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZY01909.1|3207502_3208672_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZY01910.1|3208661_3211499_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
AZY02823.1|3211495_3213196_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZY01911.1|3213222_3213501_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZY01912.1|3213500_3214595_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZY01913.1|3214603_3215095_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZY01914.1|3215834_3217643_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZY01915.1|3217682_3218762_-	dihydroorotase	NA	NA	NA	NA	NA
AZY01916.1|3218758_3219952_-	amidohydrolase	NA	NA	NA	NA	NA
AZY01917.1|3220101_3220380_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZY01918.1|3220708_3221101_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02824.1|3227825_3228302_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY01919.1|3228454_3229567_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZY01920.1|3229634_3230195_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZY01921.1|3230218_3230551_-	cytochrome C	NA	NA	NA	NA	NA
AZY01922.1|3230534_3232223_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZY01923.1|3232342_3233131_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZY01924.1|3233838_3234789_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01925.1|3235233_3235545_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY01926.1|3235544_3236075_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01927.1|3236237_3237188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01928.1|3237286_3238237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01929.1|3238526_3238991_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY01930.1|3239005_3240511_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY01931.1|3240764_3242372_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY01932.1|3242427_3243333_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY01933.1|3243773_3244724_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01934.1|3244822_3245773_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	3267498	3305913	4107721	holin,transposase	Tupanvirus(16.67%)	36	NA	NA
AZY01956.1|3267498_3267834_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY01957.1|3267833_3268676_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY01958.1|3268774_3269725_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01959.1|3269789_3270761_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01960.1|3270824_3271844_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY02827.1|3271845_3273219_-	MFS transporter	NA	NA	NA	NA	NA
AZY01961.1|3273496_3274177_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY01962.1|3274189_3276316_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY01963.1|3276312_3277407_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY01964.1|3277421_3278681_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY01965.1|3278700_3280425_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY01966.1|3280663_3281416_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY01967.1|3281554_3282505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02828.1|3282817_3284296_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY01968.1|3284302_3285412_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY01969.1|3285423_3286104_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY01970.1|3286125_3286881_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02829.1|3287016_3287901_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY01971.1|3287988_3288570_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01972.1|3288662_3288785_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01973.1|3288830_3289130_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY02830.1|3289281_3289707_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01974.1|3291913_3292417_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY01975.1|3292432_3293383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01976.1|3293369_3293567_-	hypothetical protein	NA	NA	NA	NA	NA
AZY01977.1|3293910_3294684_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY01978.1|3294816_3295827_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY01979.1|3295978_3297634_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY01980.1|3297688_3298030_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY01981.1|3298043_3299483_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY01982.1|3299615_3300431_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01983.1|3300449_3300638_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01984.1|3300624_3301575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY01985.1|3302962_3303910_+	hypothetical protein	NA	NA	NA	NA	NA
AZY01986.1|3304136_3304877_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY01987.1|3304962_3305913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	3381320	3435061	4107721	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY02039.1|3381320_3382271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02040.1|3382675_3383320_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY02041.1|3383344_3383929_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY02042.1|3384029_3384647_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY02043.1|3384649_3386365_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY02044.1|3386361_3386670_-	urease subunit beta	NA	NA	NA	NA	NA
AZY02045.1|3386686_3387322_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY02046.1|3387348_3387651_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY02047.1|3387751_3388606_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY02048.1|3389187_3389460_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY02049.1|3389877_3390285_-	GFA family protein	NA	NA	NA	NA	NA
AZY02050.1|3390654_3391449_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02051.1|3391549_3392785_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY02052.1|3392853_3393870_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY02053.1|3393866_3395258_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY02054.1|3395254_3396451_+	MFS transporter	NA	NA	NA	NA	NA
AZY02055.1|3396447_3397986_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY02056.1|3397982_3399242_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02057.1|3401182_3402133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02058.1|3402899_3403994_-	CoA transferase	NA	NA	NA	NA	NA
AZY02059.1|3403986_3405321_-	CoA ligase	NA	NA	NA	NA	NA
AZY02060.1|3405274_3405958_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02061.1|3405983_3407147_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY02062.1|3407143_3408145_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY02063.1|3408144_3409017_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY02064.1|3409013_3409763_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY02065.1|3409759_3410551_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY02066.1|3410547_3411687_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02067.1|3411995_3412748_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY02068.1|3412781_3413564_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY02069.1|3413567_3413957_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY02070.1|3415096_3415960_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY02071.1|3415995_3417084_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02072.1|3417080_3418031_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02073.1|3418017_3418386_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02074.1|3418384_3421363_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02075.1|3422289_3423168_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY02076.1|3425116_3426067_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02077.1|3426063_3426531_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY02078.1|3426573_3427344_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY02079.1|3427364_3428165_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY02080.1|3428175_3429585_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY02081.1|3429679_3430465_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY02082.1|3430704_3431721_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY02083.1|3431828_3432221_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY02084.1|3432358_3433039_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY02085.1|3433043_3434042_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY02086.1|3434110_3435061_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	3441216	3500516	4107721	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY02090.1|3441216_3442980_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY02091.1|3443091_3443970_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY02092.1|3444082_3444898_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY02093.1|3444901_3445153_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY02094.1|3445237_3446254_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY02095.1|3446584_3446806_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02096.1|3449166_3450084_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY02097.1|3450581_3451790_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY02098.1|3451869_3453441_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02099.1|3453558_3454494_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY02100.1|3454682_3455627_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY02101.1|3455695_3455911_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02102.1|3456194_3461912_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY02103.1|3461917_3463045_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY02104.1|3463100_3463727_+	aminotransferase	NA	NA	NA	NA	NA
AZY02105.1|3463998_3465015_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY02106.1|3465110_3465821_-	oxidoreductase	NA	NA	NA	NA	NA
AZY02834.1|3465817_3466807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY02107.1|3466938_3468534_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY02108.1|3468536_3469274_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02109.1|3469429_3470302_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY02110.1|3470570_3471791_+	MFS transporter	NA	NA	NA	NA	NA
AZY02111.1|3471787_3472447_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY02112.1|3472518_3473151_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY02113.1|3473180_3473699_+	flavin reductase	NA	NA	NA	NA	NA
AZY02114.1|3473709_3474819_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY02115.1|3474865_3475720_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY02116.1|3475721_3476624_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02117.1|3477846_3478797_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02118.1|3480553_3481543_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02119.1|3481718_3482507_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY02120.1|3482503_3483535_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY02121.1|3483553_3484117_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY02122.1|3484172_3485693_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY02123.1|3485956_3486661_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY02124.1|3486668_3487406_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY02125.1|3487511_3487886_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY02126.1|3487928_3489218_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02127.1|3489214_3490384_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY02128.1|3490380_3491220_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY02129.1|3491279_3492215_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY02130.1|3492227_3493178_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02131.1|3493276_3494239_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY02132.1|3494270_3494630_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY02133.1|3494754_3495657_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY02134.1|3495658_3497431_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY02135.1|3497465_3498242_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY02136.1|3499565_3500516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	3515454	3574576	4107721	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
AZY02148.1|3515454_3516405_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02149.1|3516533_3517667_-	peptidase	NA	NA	NA	NA	NA
AZY02150.1|3517710_3518616_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY02151.1|3518618_3520319_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY02152.1|3520315_3521236_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY02153.1|3521243_3522221_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY02154.1|3522279_3523314_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY02155.1|3525288_3525525_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02156.1|3525651_3526515_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY02157.1|3526603_3527425_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY02158.1|3527504_3528242_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY02159.1|3528238_3529231_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY02160.1|3529344_3530007_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02161.1|3530051_3531200_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY02162.1|3533523_3534474_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02163.1|3534814_3535765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02164.1|3535863_3536814_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02165.1|3537110_3537608_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02166.1|3537650_3539426_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY02837.1|3539472_3540300_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY02167.1|3540306_3541041_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY02168.1|3542210_3543005_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02169.1|3543294_3543885_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY02170.1|3543918_3545247_-	amidase	NA	NA	NA	NA	NA
AZY02171.1|3545321_3546467_-	transporter	NA	NA	NA	NA	NA
AZY02172.1|3546578_3547577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02173.1|3547539_3547974_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY02174.1|3549490_3550375_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY02175.1|3550371_3551577_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY02176.1|3551573_3552434_-	endonuclease	NA	NA	NA	NA	NA
AZY02177.1|3552546_3554337_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY02178.1|3554377_3555043_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY02179.1|3555043_3555352_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY02838.1|3555517_3556804_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02180.1|3558237_3559188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02181.1|3559286_3560237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02182.1|3562188_3563403_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY02183.1|3563508_3564498_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY02184.1|3564494_3565103_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY02185.1|3565115_3565745_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY02186.1|3565741_3566362_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY02187.1|3566393_3567185_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY02188.1|3568027_3568492_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY02189.1|3568510_3569437_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY02190.1|3569490_3570777_-	cytochrome c	NA	NA	NA	NA	NA
AZY02191.1|3571707_3572580_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY02192.1|3572576_3573527_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY02193.1|3573625_3574576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025380	Bordetella pertussis strain I598 chromosome, complete genome	4107721	4006789	4071701	4107721	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY02580.1|4006789_4007275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02581.1|4007493_4008474_+	protein BugT	NA	NA	NA	NA	NA
AZY02582.1|4008740_4009550_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY02583.1|4009589_4010270_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY02584.1|4010263_4010722_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY02585.1|4010733_4011096_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY02586.1|4011178_4011862_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY02587.1|4011917_4012226_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY02588.1|4012244_4012559_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY02589.1|4012555_4015030_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY02590.1|4015037_4016429_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY02591.1|4016425_4016611_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY02592.1|4016589_4017291_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY02593.1|4017287_4018109_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY02860.1|4018089_4019214_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY02594.1|4019206_4020226_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY02595.1|4020431_4021466_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY02861.1|4021566_4022358_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY02596.1|4022440_4022815_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY02597.1|4022792_4024202_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY02598.1|4024194_4025577_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY02599.1|4025911_4027516_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY02600.1|4027551_4028565_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY02601.1|4028575_4029502_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY02602.1|4029892_4030843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02603.1|4031012_4032239_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY02604.1|4032438_4033305_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY02605.1|4033297_4034260_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY02606.1|4034360_4035311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02607.1|4035409_4036360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02608.1|4036458_4037409_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY02609.1|4037405_4038899_-	RND transporter	NA	NA	NA	NA	NA
AZY02610.1|4038895_4042003_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY02611.1|4041999_4045068_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY02612.1|4045064_4046315_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY02613.1|4046495_4047257_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY02614.1|4047289_4047940_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY02615.1|4047942_4048782_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY02616.1|4049022_4049766_+	hypothetical protein	NA	NA	NA	NA	NA
AZY02617.1|4049848_4050196_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY02618.1|4050293_4051136_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY02619.1|4051180_4052068_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY02620.1|4052094_4052283_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY02621.1|4052380_4053838_+	MFS transporter	NA	NA	NA	NA	NA
AZY02622.1|4053824_4055351_+	glycerol kinase	NA	NA	NA	NA	NA
AZY02623.1|4055369_4055837_-	hypothetical protein	NA	NA	NA	NA	NA
AZY02624.1|4055836_4056859_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY02625.1|4056979_4057720_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY02626.1|4057774_4058875_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY02627.1|4058876_4060067_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY02628.1|4060186_4061203_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY02629.1|4061521_4062193_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY02630.1|4062189_4063098_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY02631.1|4063309_4063957_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY02632.1|4067808_4068885_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY02633.1|4068895_4069705_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY02634.1|4069794_4070568_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY02635.1|4070750_4071701_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
