The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	0	70443	4105345	transposase,protease,tRNA	Natrialba_phage(12.5%)	60	NA	NA
AZX92081.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX92082.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX92083.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX92084.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX92085.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX92086.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX92087.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX92088.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX92089.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX92090.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX92091.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX92092.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX92093.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX92094.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX95468.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX92095.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92096.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX92097.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX92098.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92099.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX92100.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92101.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX92102.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX95469.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92103.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX92104.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX92105.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AZX92106.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX92107.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX92108.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX92109.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX92110.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX92111.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX92112.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX92113.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX92114.1|43662_44613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92115.1|45112_45748_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92116.1|45719_45956_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX92117.1|46083_46977_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92118.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX92119.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX92120.1|50140_51091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92121.1|51133_52390_+	MFS transporter	NA	NA	NA	NA	NA
AZX92122.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX92123.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX92124.1|54976_55666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX92125.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX92126.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX92127.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92128.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX92129.1|60473_60893_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX92130.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92131.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92132.1|63472_64054_-|protease	protease	protease	NA	NA	NA	NA
AZX92133.1|64066_64384_-	ferredoxin	NA	NA	NA	NA	NA
AZX92134.1|64487_65546_-	oxidoreductase	NA	NA	NA	NA	NA
AZX92135.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX92136.1|67481_68663_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92137.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92138.1|70128_70443_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	77633	136107	4105345	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
AZX92144.1|77633_78584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95471.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92145.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX92146.1|82821_83526_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX92147.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX92148.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
AZX92149.1|85480_86713_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX92150.1|86730_87990_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX92151.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX92152.1|89109_90210_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX92153.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX92154.1|90792_91845_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX92155.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX92156.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX92157.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92158.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX92159.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX92160.1|96202_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX92161.1|97338_98178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX92162.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92163.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX92164.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX92165.1|101787_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX92166.1|102807_103083_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX92167.1|103090_103753_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX92168.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX92169.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX92170.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX92171.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX92172.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92173.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX92174.1|110551_111181_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX92175.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX92176.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX95472.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX92177.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
AZX95473.1|114943_115960_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX92178.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX92179.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX92180.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX92181.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX92182.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX92183.1|121121_122072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92184.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AZX92185.1|123072_123906_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX95474.1|124742_125753_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX95475.1|125749_126139_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92186.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
AZX92187.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX92188.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92189.1|131149_132589_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AZX92190.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZX92191.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92192.1|135156_136107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	164892	225402	4105345	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX92215.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92216.1|167286_168189_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92217.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
AZX92218.1|169126_170509_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX92219.1|170542_171172_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX92220.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX92221.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
AZX95478.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
AZX92222.1|174300_175251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92223.1|176366_176894_+	lipoprotein	NA	NA	NA	NA	NA
AZX92224.1|176985_177801_+	lipoprotein	NA	NA	NA	NA	NA
AZX92225.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX92226.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX92227.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92228.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX92229.1|182424_184329_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX92230.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX92231.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX92232.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AZX92233.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX95479.1|189529_189976_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX92234.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92235.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX92236.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX92237.1|194403_195354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92238.1|195399_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX92239.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX92240.1|197376_198477_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX92241.1|198558_198933_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX92242.1|198992_201857_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX92243.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92244.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
AZX92245.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92246.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92247.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX92248.1|207168_208218_-	cyclase	NA	NA	NA	NA	NA
AZX92249.1|208214_209039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX92250.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
AZX92251.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX92252.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX92253.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX95480.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92254.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX92255.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX92256.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX92257.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX92258.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX92259.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX92260.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX92261.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX92262.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	233334	287971	4105345	transposase,protease,tRNA	Bacillus_phage(25.0%)	49	NA	NA
AZX92270.1|233334_234285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92271.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92272.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92273.1|236367_237165_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX92274.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX92275.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92276.1|240333_241377_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX92277.1|241547_243650_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92278.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92279.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX92280.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX92281.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX92282.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX92283.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX92284.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX92285.1|251621_253511_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX92286.1|253597_254236_+	hypothetical protein	NA	NA	NA	NA	NA
AZX95481.1|254378_255623_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX92287.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX92288.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX92289.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
AZX92290.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX92291.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92292.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX92293.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
AZX92294.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92295.1|265571_266522_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92296.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92297.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX92298.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX92299.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX92300.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX92301.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX92302.1|274098_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX92303.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX92304.1|277138_278089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92305.1|278187_279138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92306.1|279124_279340_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92307.1|279415_279577_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX92308.1|279584_279725_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92309.1|280243_280693_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX92310.1|280702_281314_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX92311.1|281472_282327_-	cytochrome c1	NA	NA	NA	NA	NA
AZX92312.1|282346_283729_-	cytochrome b	NA	NA	NA	NA	NA
AZX95482.1|283793_284435_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX92313.1|284574_285033_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX92314.1|285057_285834_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX95483.1|285887_287024_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX92315.1|287020_287971_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	391904	449413	4105345	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX92414.1|391904_392855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92415.1|392991_393909_+	reductase	NA	NA	NA	NA	NA
AZX92416.1|393905_394154_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX92417.1|394150_395356_+	CoA transferase	NA	NA	NA	NA	NA
AZX92418.1|395428_396424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92419.1|396446_397667_-	CoA transferase	NA	NA	NA	NA	NA
AZX92420.1|397663_398308_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92421.1|400038_400848_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX95489.1|401065_402106_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX92422.1|402204_403188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92423.1|403114_403816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92424.1|403864_404635_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX92425.1|404631_405873_-	CoA transferase	NA	NA	NA	NA	NA
AZX92426.1|405977_407684_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX92427.1|407680_408577_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92428.1|408617_410207_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX92429.1|410256_411249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92430.1|411317_411917_-	hypothetical protein	NA	NA	NA	NA	NA
AZX95490.1|412377_413355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92431.1|413433_414384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92432.1|414472_415387_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX92433.1|415383_416043_+	LysE family translocator	NA	NA	NA	NA	NA
AZX92434.1|416132_417056_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX92435.1|417061_417517_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92436.1|417513_418617_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX95491.1|418536_418845_+	GtrA family protein	NA	NA	NA	NA	NA
AZX92437.1|418804_420424_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX92438.1|420420_421479_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX92439.1|421608_422103_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX92440.1|422195_423173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92441.1|423368_424574_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX92442.1|424570_426082_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX95492.1|426097_427411_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX92443.1|427601_427781_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92444.1|428190_428925_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX92445.1|431369_432320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92446.1|432451_432850_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX92447.1|433260_433731_-	universal stress protein	NA	NA	NA	NA	NA
AZX92448.1|433819_434164_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX92449.1|434263_435664_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX92450.1|437452_437971_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX92451.1|438081_438837_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX92452.1|439032_440265_+	CoA transferase	NA	NA	NA	NA	NA
AZX92453.1|440257_441043_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX92454.1|441109_442081_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92455.1|442091_443069_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92456.1|443194_444367_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX92457.1|444393_445422_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX92458.1|445487_446681_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX92459.1|448462_449413_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	621849	722313	4105345	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX92611.1|621849_622800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92612.1|623498_623882_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92613.1|623939_624542_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX95498.1|624559_624961_-	DoxX family protein	NA	NA	NA	NA	NA
AZX95499.1|625094_625988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92614.1|625984_626566_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX92615.1|627360_628095_+	arginyltransferase	NA	NA	NA	NA	NA
AZX92616.1|628135_629185_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX92617.1|629332_629911_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX92618.1|630297_631275_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX92619.1|631368_635763_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX92620.1|635963_636812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92621.1|636970_637783_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX92622.1|637838_638789_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92623.1|638887_639688_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92624.1|639749_640133_+	thioredoxin	NA	NA	NA	NA	NA
AZX92625.1|640144_641578_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX92626.1|641784_642114_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX95500.1|642116_642785_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX92627.1|643048_643969_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX92628.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX92629.1|644250_644673_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX92630.1|644689_645790_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX92631.1|645886_647404_-	peptidase	NA	NA	NA	NA	NA
AZX92632.1|647479_648319_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX92633.1|648340_649222_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX92634.1|649303_650398_-	porin	NA	NA	NA	NA	NA
AZX92635.1|650691_651642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95501.1|651716_652658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92636.1|652741_653101_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92637.1|653482_654520_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92638.1|654836_656177_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX92639.1|656186_656639_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92640.1|656735_657917_+	monooxygenase	NA	NA	NA	NA	NA
AZX92641.1|657976_659008_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX92642.1|659048_659288_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX92643.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX92644.1|660946_661495_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX92645.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX92646.1|662166_663078_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX92647.1|663151_664120_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX92648.1|664242_665316_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX92649.1|665320_667141_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX92650.1|667217_668168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92651.1|668256_668592_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX92652.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX92653.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
AZX92654.1|670885_671641_-	hypothetical protein	NA	NA	NA	NA	NA
AZX95502.1|671609_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX92655.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX92656.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX92657.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX92658.1|674954_676697_+	sulfite reductase	NA	NA	NA	NA	NA
AZX92659.1|676689_677214_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX92660.1|677253_678048_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX92661.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92662.1|679387_680338_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92663.1|680589_680802_-	hypothetical protein	NA	NA	NA	NA	NA
AZX95503.1|680867_681479_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX92664.1|681958_682279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92665.1|682271_682970_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92666.1|682984_683206_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92667.1|683223_684174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95504.1|684849_685299_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX92668.1|685285_686563_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX92669.1|686565_687984_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX95505.1|688012_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX92670.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX92671.1|689438_690041_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX92672.1|690469_691420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92673.1|691437_692085_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX92674.1|692094_692346_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92675.1|692408_692891_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX92676.1|692892_693093_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92677.1|693092_693488_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX92678.1|693484_693883_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX92679.1|693879_694302_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92680.1|694309_694810_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX92681.1|695064_695583_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX92682.1|695592_695922_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX92683.1|695939_696230_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX92684.1|696255_698868_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX92685.1|698877_699237_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92686.1|699304_699838_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX92687.1|699834_700224_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX92688.1|700216_704173_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX92689.1|704177_704594_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92690.1|704812_705076_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX92691.1|705075_705888_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92692.1|705892_706135_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92693.1|706113_706665_+	lysozyme	NA	NA	NA	NA	NA
AZX92694.1|706646_707180_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX92695.1|707176_707458_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92696.1|707800_708001_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92697.1|708007_708679_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX92698.1|709034_709721_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX92699.1|709701_710274_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX92700.1|710339_712070_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX92701.1|712122_712551_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX92702.1|712553_713234_+	protein TolQ	NA	NA	NA	NA	NA
AZX92703.1|713233_713692_+	protein TolR	NA	NA	NA	NA	NA
AZX92704.1|713728_714703_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX92705.1|714719_716036_+	protein TolB	NA	NA	NA	NA	NA
AZX92706.1|716067_716565_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX92707.1|716651_717341_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX92708.1|717340_718390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX92709.1|718386_719181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX92710.1|719349_719700_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92711.1|719675_720233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92712.1|721157_721376_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92713.1|721362_722313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	855146	904410	4105345	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZX92816.1|855146_856097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95510.1|856069_856669_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92817.1|856670_857105_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX92818.1|857101_857536_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92819.1|857519_858323_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX92820.1|858339_859155_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX92821.1|859151_859967_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX92822.1|860113_860815_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92823.1|860842_862801_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX92824.1|862883_863834_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92825.1|864054_864723_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX92826.1|864846_865953_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX92827.1|865965_869079_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX92828.1|869075_870569_+	RND transporter	NA	NA	NA	NA	NA
AZX92829.1|870583_871255_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX92830.1|871298_871793_-	azurin	NA	NA	NA	NA	NA
AZX92831.1|871933_872581_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX95511.1|872684_874733_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX92832.1|874729_876742_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX92833.1|876767_878102_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX92834.1|878210_879203_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92835.1|879269_881354_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX92836.1|881378_882350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92837.1|882478_883480_-	peptidase M14	NA	NA	NA	NA	NA
AZX92838.1|883513_884755_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX92839.1|884835_885759_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX92840.1|885836_886661_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX92841.1|886857_887874_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX92842.1|888070_889054_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92843.1|890652_892041_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX92844.1|892071_893061_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92845.1|893171_894404_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX92846.1|894685_895486_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92847.1|895508_897740_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX92848.1|898527_898974_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX92849.1|898995_899742_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX92850.1|899885_900863_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX92851.1|901496_902108_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX92852.1|902101_903319_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX92853.1|903459_904410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	914022	978962	4105345	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX92862.1|914022_914973_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92863.1|914969_916820_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX92864.1|917200_917860_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX92865.1|917947_918100_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92866.1|918208_918376_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92867.1|918387_919068_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX92868.1|919349_920066_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX92869.1|920080_921382_-	phospholipase	NA	NA	NA	NA	NA
AZX92870.1|923526_926415_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX92871.1|926638_927991_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX92872.1|928019_928541_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX92873.1|928537_929992_+	carboxylase	NA	NA	NA	NA	NA
AZX92874.1|930026_930275_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92875.1|930380_931256_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92876.1|931281_932337_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92877.1|932349_933141_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92878.1|933173_934544_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX92879.1|935720_936671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92880.1|936723_936945_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92881.1|937104_937317_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92882.1|937436_938555_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX92883.1|938651_938867_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92884.1|939060_939312_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92885.1|939424_940375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92886.1|940371_940755_-	ferredoxin	NA	NA	NA	NA	NA
AZX92887.1|940809_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX95513.1|942773_943601_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX92888.1|943646_944627_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX92889.1|944623_944836_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92890.1|944832_946014_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX92891.1|946177_946912_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX92892.1|946913_949526_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX92893.1|949661_951575_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX92894.1|952190_952601_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX92895.1|952698_953784_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX92896.1|953882_954833_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92897.1|954829_955804_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX92898.1|955928_956840_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX95514.1|957116_957509_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX92899.1|957638_958589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92900.1|958618_958801_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX92901.1|958839_959097_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92902.1|959573_960755_-	MFS transporter	NA	NA	NA	NA	NA
AZX92903.1|960970_961648_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX92904.1|961644_962418_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX92905.1|962495_963077_-	OmpA family protein	NA	NA	NA	NA	NA
AZX92906.1|963447_966129_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX92907.1|966128_967262_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX92908.1|967254_968340_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX92909.1|968426_969326_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX92910.1|969322_970651_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX92911.1|970665_971337_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX92912.1|971509_973240_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX92913.1|973241_973601_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX92914.1|973792_974107_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX92915.1|974149_975370_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX92916.1|975366_976308_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX92917.1|976304_977294_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX92918.1|977328_977913_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX92919.1|978011_978962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	998367	1061518	4105345	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZX92934.1|998367_999318_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92935.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX92936.1|1000609_1001626_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX92937.1|1003134_1003707_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX92938.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX95516.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92939.1|1006274_1009454_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX92940.1|1009450_1010833_+	multidrug transporter	NA	NA	NA	NA	NA
AZX92941.1|1010902_1011154_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX92942.1|1011299_1011950_-	SCO family protein	NA	NA	NA	NA	NA
AZX92943.1|1012100_1014215_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX92944.1|1014290_1015142_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX92945.1|1015138_1015765_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX92946.1|1015761_1017516_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX92947.1|1017808_1020514_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX92948.1|1020526_1022188_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX92949.1|1022200_1023991_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX92950.1|1024212_1025388_-	flagellin FliC	NA	NA	NA	NA	NA
AZX92951.1|1025430_1026381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92952.1|1026479_1027220_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX92953.1|1027414_1029451_+	transketolase	NA	NA	NA	NA	NA
AZX92954.1|1029468_1030479_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX92955.1|1030596_1031790_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX92956.1|1031819_1032593_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX92957.1|1032589_1033780_-	acetate kinase	NA	NA	NA	NA	NA
AZX92958.1|1033805_1034744_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX95517.1|1034740_1037089_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX92959.1|1037243_1037951_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX92960.1|1037988_1039122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92961.1|1039398_1039947_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX92962.1|1039965_1040451_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX92963.1|1040628_1041567_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX92964.1|1041569_1041887_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX92965.1|1041932_1042877_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92966.1|1044557_1045208_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX92967.1|1045261_1045597_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92968.1|1045593_1046454_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX92969.1|1046470_1046752_-	hypothetical protein	NA	NA	NA	NA	NA
AZX92970.1|1046825_1047089_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX92971.1|1047332_1048283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX92972.1|1048581_1049319_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX92973.1|1049754_1050078_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX92974.1|1050112_1050673_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX92975.1|1050793_1051669_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX92976.1|1051681_1052629_+	motility protein MotB	NA	NA	NA	NA	NA
AZX92977.1|1052730_1053024_+	response regulator	NA	NA	NA	NA	NA
AZX92978.1|1053050_1055108_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX92979.1|1055122_1055623_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX92980.1|1055696_1057403_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX92981.1|1058266_1059319_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX92982.1|1059371_1059761_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX92983.1|1059769_1060402_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX92984.1|1060501_1061518_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	1067502	1135664	4105345	transposase,holin,tRNA	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
AZX92989.1|1067502_1068930_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX92990.1|1069867_1070884_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX92991.1|1071216_1072152_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX92992.1|1072201_1074082_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX92993.1|1074148_1074493_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX92994.1|1074637_1075774_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX92995.1|1075770_1076844_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX92996.1|1077001_1078438_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX95519.1|1078528_1079170_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX95520.1|1079505_1080522_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX95521.1|1083668_1085090_-	siroheme synthase	NA	NA	NA	NA	NA
AZX92997.1|1085353_1086070_+	hypothetical protein	NA	NA	NA	NA	NA
AZX92998.1|1086154_1086472_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX92999.1|1086512_1086926_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX93000.1|1086927_1087287_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93001.1|1087329_1088874_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX93002.1|1088957_1089788_+	transglycosylase	NA	NA	NA	NA	NA
AZX93003.1|1089822_1090977_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX93004.1|1091019_1091892_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93005.1|1092008_1094297_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX93006.1|1095503_1095968_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX93007.1|1095994_1096945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95522.1|1097312_1098089_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX93008.1|1098133_1098991_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX93009.1|1099012_1100029_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX93010.1|1100163_1101204_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX93011.1|1101398_1103480_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX93012.1|1103715_1105209_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX93013.1|1105439_1106234_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX93014.1|1106454_1107813_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX93015.1|1107809_1108652_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX93016.1|1108670_1110557_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX93017.1|1110794_1111427_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX93018.1|1111445_1112048_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93019.1|1112199_1113150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93020.1|1113952_1114753_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93021.1|1114796_1115783_-	homoserine kinase	NA	NA	NA	NA	NA
AZX93022.1|1115922_1116936_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX93023.1|1116932_1117883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93024.1|1117995_1118454_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX93025.1|1118490_1119804_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93026.1|1119821_1120193_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX93027.1|1120189_1121653_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX93028.1|1121745_1122522_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX93029.1|1122503_1125383_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX93030.1|1125565_1126516_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93031.1|1126683_1127508_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX93032.1|1127507_1128386_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX93033.1|1129290_1130406_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93034.1|1130413_1131229_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX93035.1|1131225_1133091_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX93036.1|1133169_1133802_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93037.1|1133798_1134101_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93038.1|1134143_1135664_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	1317953	1386440	4105345	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZX93180.1|1317953_1318904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93181.1|1319672_1320311_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX95533.1|1321200_1321647_+	glutamate racemase	NA	NA	NA	NA	NA
AZX93182.1|1321728_1322430_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZX93183.1|1322430_1323198_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZX93184.1|1323194_1324433_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZX93185.1|1324432_1325359_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZX93186.1|1325461_1326577_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93187.1|1326592_1327543_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93188.1|1327896_1328478_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZX93189.1|1328474_1329308_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZX95534.1|1329518_1330832_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZX93190.1|1331008_1331890_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZX93191.1|1331909_1332761_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZX93192.1|1332813_1333902_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZX93193.1|1334012_1335140_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX95535.1|1335374_1335986_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX93194.1|1336084_1337035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93195.1|1337256_1337634_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZX95536.1|1337781_1338279_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZX93196.1|1338275_1338803_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZX93197.1|1338936_1339752_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93198.1|1339764_1340946_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX93199.1|1340993_1341887_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZX95537.1|1342013_1342484_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93200.1|1342609_1343437_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZX93201.1|1343465_1344242_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZX93202.1|1344238_1344532_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZX93203.1|1344528_1344993_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX93204.1|1345004_1345790_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZX93205.1|1345815_1346316_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZX93206.1|1346398_1347577_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZX93207.1|1349204_1349540_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX93208.1|1349727_1351176_+	CoA transferase	NA	NA	NA	NA	NA
AZX93209.1|1351233_1351578_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZX93210.1|1351684_1352224_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX93211.1|1352316_1353267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93212.1|1353253_1353736_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93213.1|1354005_1354437_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93214.1|1354618_1355023_-	DoxX family protein	NA	NA	NA	NA	NA
AZX93215.1|1356259_1356583_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93216.1|1356585_1357473_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX93217.1|1357505_1357931_-	universal stress protein	NA	NA	NA	NA	NA
AZX93218.1|1358002_1358356_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93219.1|1358595_1359102_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93220.1|1359140_1360472_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZX93221.1|1360531_1361347_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZX93222.1|1361343_1362198_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZX95538.1|1365260_1367804_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZX93223.1|1369170_1370925_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZX93224.1|1370921_1373042_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZX93225.1|1373046_1375242_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZX95539.1|1375238_1378580_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZX93226.1|1381382_1382333_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93227.1|1382398_1382578_-	hypothetical protein	NA	NA	NA	NA	NA
AZX95540.1|1382694_1383417_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX93228.1|1383436_1384582_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX93229.1|1385489_1386440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	1446931	1502419	4105345	transposase,protease	Mollivirus(16.67%)	56	NA	NA
AZX93277.1|1446931_1447882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93278.1|1449083_1449530_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZX93279.1|1449522_1450998_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZX93280.1|1450994_1451750_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZX93281.1|1451742_1452753_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZX93282.1|1452742_1454419_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZX93283.1|1454731_1455064_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZX93284.1|1455077_1455473_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93285.1|1455482_1455809_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZX93286.1|1455805_1456132_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX93287.1|1456058_1457081_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX93288.1|1457077_1457458_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZX93289.1|1457475_1457904_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZX93290.1|1457911_1459285_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZX95544.1|1459425_1459803_-	flagellar protein	NA	NA	NA	NA	NA
AZX93291.1|1460065_1461373_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZX93292.1|1461433_1462264_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX93293.1|1462260_1462749_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZX93294.1|1462790_1464311_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZX95545.1|1464354_1464831_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX93295.1|1465634_1468232_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZX93296.1|1468261_1469083_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZX93297.1|1469809_1470559_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZX93298.1|1470691_1471621_+	elongation factor Ts	NA	NA	NA	NA	NA
AZX93299.1|1471718_1472435_+	UMP kinase	NA	NA	NA	NA	NA
AZX93300.1|1472449_1473010_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZX93301.1|1473047_1473941_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZX93302.1|1473960_1474818_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZX93303.1|1474814_1476014_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZX93304.1|1476053_1477388_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZX93305.1|1477440_1479777_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZX95546.1|1479902_1480466_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZX93306.1|1480474_1481566_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZX93307.1|1481637_1482093_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZX93308.1|1482093_1482888_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZX93309.1|1482884_1484066_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZX93310.1|1484052_1484658_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZX93311.1|1484654_1485428_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZX93312.1|1485439_1486267_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZX93313.1|1486428_1488792_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZX93314.1|1488859_1489579_-	GMP synthase	NA	NA	NA	NA	NA
AZX93315.1|1489702_1490128_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZX93316.1|1490162_1491113_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93317.1|1491230_1492157_+	paraslipin	NA	NA	NA	NA	NA
AZX93318.1|1492222_1493380_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX93319.1|1493360_1493828_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX93320.1|1493975_1494926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93321.1|1494942_1495377_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX93322.1|1495366_1495717_+	RnfH family protein	NA	NA	NA	NA	NA
AZX93323.1|1495913_1497068_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX93324.1|1497064_1498237_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX93325.1|1498284_1499178_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX93326.1|1499223_1499661_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX93327.1|1499720_1500410_+	VIT family protein	NA	NA	NA	NA	NA
AZX93328.1|1500419_1501370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93329.1|1501468_1502419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	1541742	1599824	4105345	transposase,protease,tRNA	Planktothrix_phage(15.38%)	60	NA	NA
AZX93362.1|1541742_1542555_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX93363.1|1542699_1543794_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93364.1|1544005_1544635_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93365.1|1544637_1546305_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX93366.1|1546319_1546976_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX93367.1|1547455_1548406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93368.1|1548432_1549206_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX93369.1|1549217_1550459_+	MFS transporter	NA	NA	NA	NA	NA
AZX93370.1|1552240_1553191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93371.1|1553222_1554320_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX93372.1|1554316_1555267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93373.1|1555688_1556081_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93374.1|1556086_1556863_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX93375.1|1557250_1559200_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX93376.1|1559220_1559766_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX93377.1|1559902_1560859_+	glutathione synthetase	NA	NA	NA	NA	NA
AZX93378.1|1560869_1561268_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX93379.1|1561383_1561653_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX93380.1|1561774_1563469_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX93381.1|1563633_1563858_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93382.1|1564456_1565407_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX93383.1|1565448_1566609_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93384.1|1566769_1567690_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX93385.1|1567702_1568344_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX93386.1|1568340_1569012_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX93387.1|1569008_1569779_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX93388.1|1569877_1570828_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93389.1|1571044_1571449_-	GFA family protein	NA	NA	NA	NA	NA
AZX93390.1|1571522_1572713_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX93391.1|1572746_1573073_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX93392.1|1573095_1573611_-	transporter	NA	NA	NA	NA	NA
AZX93393.1|1573669_1574896_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX93394.1|1575073_1576204_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX93395.1|1576438_1577020_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX93396.1|1577156_1578221_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX93397.1|1578305_1578752_-	GFA family protein	NA	NA	NA	NA	NA
AZX93398.1|1578976_1579858_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX93399.1|1579912_1580164_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX93400.1|1580166_1580568_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX93401.1|1580587_1580824_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93402.1|1580831_1581311_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX93403.1|1581496_1581976_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX93404.1|1581978_1583169_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX93405.1|1583173_1584226_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX93406.1|1584362_1585385_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX93407.1|1585476_1586313_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93408.1|1586505_1587411_+	agmatinase	NA	NA	NA	NA	NA
AZX93409.1|1587437_1588229_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93410.1|1588251_1588944_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX93411.1|1588965_1589718_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX93412.1|1589846_1591406_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX93413.1|1591437_1591983_+	acyl dehydratase	NA	NA	NA	NA	NA
AZX93414.1|1592120_1593377_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX93415.1|1593393_1595088_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX93416.1|1595245_1596133_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX93417.1|1596170_1597103_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX95548.1|1597116_1597605_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX93418.1|1597722_1598301_+|protease	protease	protease	NA	NA	NA	NA
AZX93419.1|1598373_1598775_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX93420.1|1598873_1599824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	1655028	1726182	4105345	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZX93467.1|1655028_1655979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93468.1|1656000_1657221_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX93469.1|1657406_1658819_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX93470.1|1658882_1659950_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX93471.1|1659946_1661437_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX95551.1|1661446_1662391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93472.1|1662550_1663249_+	pirin family protein	NA	NA	NA	NA	NA
AZX93473.1|1663326_1664232_+	pirin family protein	NA	NA	NA	NA	NA
AZX93474.1|1664251_1665202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93475.1|1665300_1666095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX93476.1|1666099_1667770_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX93477.1|1667893_1668943_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93478.1|1669264_1670041_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX93479.1|1670105_1671008_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93480.1|1672301_1673105_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX93481.1|1675798_1676185_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX93482.1|1676200_1678291_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZX93483.1|1678342_1679296_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX95552.1|1679310_1680198_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93484.1|1680335_1681862_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX95553.1|1681960_1682461_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX93485.1|1682784_1684740_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX93486.1|1684907_1686992_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93487.1|1687018_1687804_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX93488.1|1688659_1689430_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX93489.1|1689429_1690170_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX93490.1|1690211_1691381_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX93491.1|1691412_1693497_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX93492.1|1693493_1694384_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX93493.1|1694380_1695478_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX93494.1|1695500_1696790_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX93495.1|1696801_1697827_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX93496.1|1697823_1699881_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX93497.1|1699894_1701070_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX93498.1|1701151_1702102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93499.1|1702160_1702934_+	oxidoreductase	NA	NA	NA	NA	NA
AZX93500.1|1702926_1704483_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX93501.1|1704479_1705430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93502.1|1706756_1707359_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93503.1|1707598_1708300_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX93504.1|1708293_1709076_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX93505.1|1709260_1710211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93506.1|1710309_1711047_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX93507.1|1711236_1711995_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX93508.1|1712041_1713031_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX93509.1|1713208_1714177_-	transporter	NA	NA	NA	NA	NA
AZX93510.1|1715716_1716685_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX93511.1|1716693_1717635_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX93512.1|1718108_1719119_+	hypothetical protein	NA	NA	NA	NA	NA
AZX95554.1|1719109_1720624_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX93513.1|1720620_1721967_+	hypothetical protein	NA	NA	NA	NA	NA
AZX95555.1|1721969_1723004_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX93514.1|1723053_1724679_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX93515.1|1725231_1726182_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	1746973	1808321	4105345	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZX93529.1|1746973_1747924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95561.1|1748217_1748940_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX93530.1|1749378_1750566_-	MFS transporter	NA	NA	NA	NA	NA
AZX93531.1|1750569_1750950_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93532.1|1752669_1753641_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX93533.1|1753654_1754368_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX93534.1|1754372_1755290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93535.1|1755396_1755693_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93536.1|1755791_1756742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93537.1|1757900_1760834_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX93538.1|1760833_1761178_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX93539.1|1761174_1762803_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX93540.1|1762799_1763279_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX93541.1|1763275_1763560_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX93542.1|1763556_1763883_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZX93543.1|1764038_1764989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93544.1|1765032_1765575_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93545.1|1765672_1766521_+	hydrolase	NA	NA	NA	NA	NA
AZX93546.1|1766513_1767020_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX93547.1|1767016_1768018_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX93548.1|1768030_1768825_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX93549.1|1768873_1770775_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX93550.1|1770771_1771395_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93551.1|1771521_1772646_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93552.1|1772963_1774631_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX93553.1|1774786_1775563_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX93554.1|1775647_1776646_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93555.1|1776642_1777416_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX93556.1|1778400_1779351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93557.1|1779374_1779839_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX93558.1|1779985_1781194_+	flavohemoprotein	NA	NA	NA	NA	NA
AZX93559.1|1781204_1781675_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX93560.1|1781793_1783083_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX93561.1|1785823_1786774_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93562.1|1786872_1787889_-	folate-binding protein	NA	NA	NA	NA	NA
AZX93563.1|1788055_1789102_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX93564.1|1789098_1789725_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX93565.1|1789721_1790774_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX93566.1|1790823_1791594_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX93567.1|1791644_1792481_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93568.1|1792676_1793417_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93569.1|1793491_1794235_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93570.1|1794896_1795670_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX95562.1|1796807_1798097_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX93571.1|1799707_1800955_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX93572.1|1800964_1802674_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX93573.1|1802670_1803609_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX93574.1|1803605_1804889_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX93575.1|1804892_1805375_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX93576.1|1805375_1806362_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93577.1|1806534_1807254_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93578.1|1807370_1808321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	1989506	2059158	4105345	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
AZX93711.1|1989506_1992164_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX93712.1|1992241_1993444_-	MFS transporter	NA	NA	NA	NA	NA
AZX93713.1|1993440_1993953_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX95570.1|1994075_1994414_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX93714.1|1994789_1995740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93715.1|1995838_1996789_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93716.1|1996952_1998848_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX93717.1|1998961_1999129_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX93718.1|1999192_1999429_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX93719.1|1999797_2000997_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX93720.1|2002512_2003463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93721.1|2003914_2004916_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93722.1|2005088_2005946_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX93723.1|2005942_2007205_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX93724.1|2007305_2007680_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX93725.1|2007728_2008940_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX93726.1|2009024_2009795_+	spermidine synthase	NA	NA	NA	NA	NA
AZX93727.1|2009908_2010673_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX95571.1|2010788_2011925_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX93728.1|2011921_2012728_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX93729.1|2014472_2015444_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX93730.1|2015600_2016113_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX93731.1|2016271_2017246_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93732.1|2018246_2019041_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX95572.1|2019066_2019873_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX93733.1|2019983_2020574_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX93734.1|2020584_2021763_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93735.1|2021865_2022240_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX93736.1|2022492_2023824_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX93737.1|2023890_2027121_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX93738.1|2028611_2029358_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX93739.1|2029442_2029904_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX93740.1|2029941_2031000_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX93741.1|2030962_2032792_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX93742.1|2032831_2033404_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX93743.1|2034828_2035740_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX93744.1|2035968_2037291_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX93745.1|2037650_2038286_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93746.1|2038245_2039196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93747.1|2040066_2040939_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX93748.1|2041016_2042156_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93749.1|2042505_2043771_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX93750.1|2043776_2044304_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX93751.1|2044308_2045127_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX93752.1|2045126_2045849_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX93753.1|2045870_2046185_+	ferredoxin	NA	NA	NA	NA	NA
AZX93754.1|2046181_2047351_+	CoA transferase	NA	NA	NA	NA	NA
AZX93755.1|2047381_2048257_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX93756.1|2048253_2049573_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX93757.1|2049645_2050842_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX93758.1|2050852_2052340_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93759.1|2054934_2055834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93760.1|2055971_2056937_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX93761.1|2057035_2057986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93762.1|2058029_2058221_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93763.1|2058207_2059158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	2070654	2120050	4105345	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZX93775.1|2070654_2071605_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93776.1|2072742_2073039_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93777.1|2073213_2074566_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX93778.1|2074708_2075725_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX95574.1|2077704_2078718_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX93779.1|2078804_2079710_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93780.1|2079866_2080211_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93781.1|2080368_2080827_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX93782.1|2080840_2083057_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX93783.1|2083053_2084115_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93784.1|2084143_2085118_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX93785.1|2085069_2085888_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX93786.1|2085900_2086509_-	peptidase S16	NA	NA	NA	NA	NA
AZX93787.1|2086683_2087079_+	VOC family protein	NA	NA	NA	NA	NA
AZX93788.1|2087097_2088537_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX93789.1|2088565_2088913_+	GFA family protein	NA	NA	NA	NA	NA
AZX93790.1|2088931_2089882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93791.1|2090534_2091485_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93792.1|2091568_2093386_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX93793.1|2093459_2094107_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93794.1|2094119_2095049_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX93795.1|2095218_2095683_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93796.1|2095930_2096611_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93797.1|2096659_2098351_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX93798.1|2098366_2098918_-	ATPase	NA	NA	NA	NA	NA
AZX93799.1|2098914_2099286_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX93800.1|2099398_2100235_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX93801.1|2100245_2100770_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX93802.1|2100867_2101047_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX93803.1|2101176_2102208_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX93804.1|2102281_2102638_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX95575.1|2102627_2103503_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX93805.1|2103601_2104486_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93806.1|2104507_2105803_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX93807.1|2106751_2107402_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX95576.1|2107489_2109010_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX93808.1|2109267_2111133_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX93809.1|2112178_2113129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93810.1|2114101_2114461_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX93811.1|2114448_2115885_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX93812.1|2115881_2116535_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX93813.1|2116531_2117731_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX93814.1|2117828_2119103_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX93815.1|2119099_2120050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	2131254	2264228	4105345	transposase,protease,tRNA	Klosneuvirus(12.5%)	113	NA	NA
AZX93829.1|2131254_2132205_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93830.1|2132164_2132578_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX93831.1|2132862_2133162_+	hypothetical protein	NA	NA	NA	NA	NA
AZX95578.1|2133571_2135740_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX93832.1|2136539_2138570_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX93833.1|2138589_2138802_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX93834.1|2139079_2139619_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX93835.1|2139732_2141040_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX93836.1|2141104_2142262_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX93837.1|2142445_2143345_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX93838.1|2143363_2144668_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX93839.1|2144633_2145740_-	GTPase HflX	NA	NA	NA	NA	NA
AZX93840.1|2145827_2146064_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX93841.1|2146202_2147273_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX93842.1|2147276_2148632_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX93843.1|2148658_2149819_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX93844.1|2149821_2150460_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93845.1|2150461_2151766_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX93846.1|2151806_2153102_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX93847.1|2153108_2153615_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX93848.1|2153611_2154760_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX93849.1|2154787_2155213_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX93850.1|2155535_2158418_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX93851.1|2158510_2159266_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX93852.1|2160031_2161381_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX93853.1|2161479_2162430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93854.1|2162528_2163479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93855.1|2163552_2164026_+	RidA family protein	NA	NA	NA	NA	NA
AZX93856.1|2164051_2165260_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX93857.1|2165256_2166030_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX93858.1|2166029_2166653_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX93859.1|2166818_2167079_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX93860.1|2167382_2167964_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93861.1|2168030_2168285_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX93862.1|2168271_2170896_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX93863.1|2170967_2171786_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93864.1|2171782_2172388_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZX93865.1|2172425_2173559_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZX95579.1|2175274_2175649_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93866.1|2175746_2177021_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93867.1|2177024_2178602_-	lipoprotein	NA	NA	NA	NA	NA
AZX93868.1|2179508_2180864_-	amidase	NA	NA	NA	NA	NA
AZX93869.1|2180860_2182495_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZX93870.1|2182487_2183318_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX93871.1|2183335_2184280_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX93872.1|2184332_2185907_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93873.1|2185954_2186305_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93874.1|2187777_2188734_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93875.1|2188883_2190221_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX93876.1|2190225_2191482_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX93877.1|2191677_2192724_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZX93878.1|2192781_2193150_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZX93879.1|2193280_2194153_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX93880.1|2194229_2195132_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93881.1|2196188_2197406_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZX93882.1|2198679_2199630_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93883.1|2199830_2200640_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX93884.1|2200764_2201715_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93885.1|2201711_2202605_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX93886.1|2202729_2202924_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX93887.1|2202923_2203265_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX93888.1|2203274_2205137_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX93889.1|2205266_2205779_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX93890.1|2205781_2206105_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX93891.1|2206106_2206517_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX93892.1|2206554_2207766_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX93893.1|2207783_2208296_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX93894.1|2208511_2209003_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX93895.1|2209255_2211292_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX93896.1|2211369_2212572_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX93897.1|2212622_2213351_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX93898.1|2214908_2215859_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93899.1|2216429_2216642_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93900.1|2216659_2217391_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93901.1|2217425_2218067_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX93902.1|2218059_2218776_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX93903.1|2220940_2221717_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX93904.1|2221738_2222896_-	thiolase	NA	NA	NA	NA	NA
AZX93905.1|2222892_2223324_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93906.1|2223320_2224124_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX93907.1|2224137_2224593_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX93908.1|2224605_2225577_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX93909.1|2225642_2226866_-	CoA transferase	NA	NA	NA	NA	NA
AZX93910.1|2227093_2228044_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX93911.1|2228167_2230621_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX93912.1|2230809_2232114_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX93913.1|2232218_2232872_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX93914.1|2232874_2234185_-	trigger factor	NA	NA	NA	NA	NA
AZX93915.1|2234363_2234942_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX93916.1|2235053_2235254_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX93917.1|2235599_2236166_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX93918.1|2236249_2236453_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX93919.1|2236759_2237080_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93920.1|2237121_2237403_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93921.1|2237477_2238734_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX93922.1|2239116_2239446_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX93923.1|2241016_2241838_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX93924.1|2241837_2242977_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX93925.1|2242983_2243880_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX93926.1|2243876_2245802_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX93927.1|2246161_2248774_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX93928.1|2248826_2251127_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX93929.1|2251123_2252332_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX93930.1|2252593_2252968_+	hypothetical protein	NA	NA	NA	NA	NA
AZX93931.1|2252964_2253915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX93932.1|2254013_2256008_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX93933.1|2256067_2257033_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX93934.1|2257022_2259884_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX93935.1|2259886_2260393_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX93936.1|2260497_2261706_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX93937.1|2261707_2262646_-	hypothetical protein	NA	NA	NA	NA	NA
AZX93938.1|2262807_2263281_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX93939.1|2263277_2264228_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	2685967	2726635	4105345	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AZX94292.1|2685967_2686918_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94293.1|2687028_2687211_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94294.1|2687310_2687907_-	lipoprotein	NA	NA	NA	NA	NA
AZX94295.1|2688090_2689182_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94296.1|2689681_2690092_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94297.1|2690150_2690492_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX94298.1|2690497_2692915_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX94299.1|2692927_2693950_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX94300.1|2694024_2694384_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX94301.1|2694399_2694597_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX94302.1|2694932_2695883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94303.1|2695869_2696058_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94304.1|2696077_2696527_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX94305.1|2696523_2697474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94306.1|2697584_2699033_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX94307.1|2699147_2699429_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94308.1|2699532_2700483_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94309.1|2700727_2701441_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX94310.1|2701563_2701791_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX94311.1|2702085_2702724_-	DedA family protein	NA	NA	NA	NA	NA
AZX94312.1|2702796_2703867_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX94313.1|2703863_2704814_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94314.1|2705229_2705754_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX94315.1|2705757_2706027_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94316.1|2706225_2707287_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX94317.1|2707370_2709005_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX94318.1|2709006_2709810_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX94319.1|2709838_2710798_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX94320.1|2710801_2712316_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94321.1|2712352_2713357_-	peptidase M20	NA	NA	NA	NA	NA
AZX94322.1|2713364_2713613_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94323.1|2713787_2714258_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX94324.1|2714293_2714905_-	LysE family translocator	NA	NA	NA	NA	NA
AZX94325.1|2714935_2715559_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX94326.1|2715639_2717172_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX94327.1|2717206_2718448_-	MFS transporter	NA	NA	NA	NA	NA
AZX94328.1|2718491_2719523_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX94329.1|2719519_2720689_-	amine oxidase	NA	NA	NA	NA	NA
AZX94330.1|2720682_2721363_-	anti-sigma factor	NA	NA	NA	NA	NA
AZX94331.1|2721524_2722367_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94332.1|2722529_2723501_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX94333.1|2723672_2724551_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX94334.1|2724573_2725644_-	FUSC family protein	NA	NA	NA	NA	NA
AZX94335.1|2725684_2726635_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	2782100	2854970	4105345	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
AZX94379.1|2782100_2782517_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX94380.1|2782627_2783260_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX94381.1|2783288_2783732_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX94382.1|2783753_2784845_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94383.1|2784899_2785700_-	aldolase	NA	NA	NA	NA	NA
AZX94384.1|2785835_2786456_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX94385.1|2786595_2787069_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94386.1|2788208_2789159_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94387.1|2789155_2796817_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX94388.1|2797057_2801104_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX94389.1|2801416_2801998_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX94390.1|2801994_2803293_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX94391.1|2803372_2804401_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX94392.1|2804324_2804675_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94393.1|2804661_2805612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94394.1|2805608_2806559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94395.1|2806875_2807481_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX94396.1|2807534_2808848_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX94397.1|2808922_2809393_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX94398.1|2809392_2810181_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX94399.1|2810191_2811844_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX94400.1|2811931_2812882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95605.1|2814043_2814550_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX94401.1|2814546_2815311_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX94402.1|2815326_2815611_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX94403.1|2815675_2816665_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX94404.1|2816836_2817766_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX94405.1|2817737_2818424_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX94406.1|2818457_2819003_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX94407.1|2819047_2820313_+	peptidase M48	NA	NA	NA	NA	NA
AZX94408.1|2820309_2821212_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX94409.1|2822393_2823338_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX94410.1|2823432_2824950_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94411.1|2824991_2826620_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX94412.1|2826727_2827609_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94413.1|2830721_2831096_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX94414.1|2831120_2831459_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX94415.1|2831502_2833137_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX94416.1|2833175_2834522_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX95606.1|2834629_2836051_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX94417.1|2836120_2836705_-	nitroreductase	NA	NA	NA	NA	NA
AZX94418.1|2836807_2837758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94419.1|2837892_2838999_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94420.1|2839009_2840107_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX94421.1|2840251_2841457_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX94422.1|2841463_2841985_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX94423.1|2841981_2842473_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX94424.1|2842469_2842721_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX94425.1|2842701_2843187_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX94426.1|2843322_2846784_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94427.1|2846780_2847686_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX94428.1|2847695_2848127_-	lipoprotein	NA	NA	NA	NA	NA
AZX95607.1|2848373_2848877_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX94429.1|2848888_2850355_+	MFS transporter	NA	NA	NA	NA	NA
AZX94430.1|2850429_2851305_-	hypothetical protein	NA	NA	NA	NA	NA
AZX95608.1|2851301_2852309_-	biotin synthase	NA	NA	NA	NA	NA
AZX94431.1|2852776_2853082_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX94432.1|2853172_2853763_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94433.1|2853953_2854970_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	2858113	2924922	4105345	transposase,protease	uncultured_Mediterranean_phage(28.57%)	48	NA	NA
AZX94436.1|2858113_2859064_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94437.1|2859162_2860113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94438.1|2860109_2860904_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX94439.1|2860935_2861640_-	oxidoreductase	NA	NA	NA	NA	NA
AZX94440.1|2861714_2862515_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX94441.1|2862511_2862919_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX94442.1|2862915_2863557_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX94443.1|2863549_2865571_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX94444.1|2866810_2868142_+	MFS transporter	NA	NA	NA	NA	NA
AZX94445.1|2868138_2869089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94446.1|2870795_2871101_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94447.1|2871769_2872108_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX94448.1|2876660_2877263_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94449.1|2877359_2878649_+	MFS transporter	NA	NA	NA	NA	NA
AZX94450.1|2878706_2879438_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX94451.1|2879434_2880238_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX94452.1|2880234_2881323_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX94453.1|2881319_2882249_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX94454.1|2882397_2883543_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94455.1|2884844_2888666_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX94456.1|2888822_2889491_-	lipoprotein	NA	NA	NA	NA	NA
AZX94457.1|2889495_2891169_-	MCE family protein	NA	NA	NA	NA	NA
AZX94458.1|2891187_2892507_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX94459.1|2892511_2894863_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX95609.1|2894882_2897051_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX94460.1|2897047_2902237_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX94461.1|2902326_2902641_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX94462.1|2902868_2903114_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX94463.1|2903208_2903727_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX94464.1|2903826_2905032_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX94465.1|2905147_2906545_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX94466.1|2906661_2907240_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX94467.1|2907312_2908704_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX94468.1|2908871_2909822_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94469.1|2910102_2910723_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX94470.1|2910719_2911133_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX94471.1|2911129_2912173_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX94472.1|2912228_2912417_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94473.1|2912426_2913191_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX94474.1|2913281_2913938_+	adenylate kinase	NA	NA	NA	NA	NA
AZX94475.1|2914029_2914788_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX94476.1|2914813_2916415_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX94477.1|2916615_2917620_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX94478.1|2917720_2917984_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX94479.1|2918101_2918878_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX94480.1|2919468_2920419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94481.1|2922802_2923915_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX94482.1|2923971_2924922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	2955308	2994497	4105345	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZX94511.1|2955308_2956259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94512.1|2956245_2956491_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94513.1|2956379_2957276_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX94514.1|2959553_2961779_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX94515.1|2961943_2963032_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX94516.1|2962988_2963642_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX94517.1|2963689_2964487_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94518.1|2965018_2965969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94519.1|2966049_2967198_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX94520.1|2967254_2968205_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94521.1|2968191_2968410_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94522.1|2968303_2968609_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX94523.1|2968637_2969072_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX94524.1|2969073_2970318_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX94525.1|2970314_2971025_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX95611.1|2971039_2971951_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX94526.1|2972313_2972718_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94527.1|2972714_2973173_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94528.1|2973179_2974088_+	hypothetical protein	NA	NA	NA	NA	NA
AZX95612.1|2974084_2974951_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX94529.1|2974937_2975765_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX94530.1|2975775_2976903_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX94531.1|2977980_2979219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94532.1|2979260_2980523_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94533.1|2980529_2981282_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX94534.1|2981333_2981519_-	hypothetical protein	NA	NA	NA	NA	NA
AZX95613.1|2981794_2982259_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX94535.1|2982290_2982950_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX94536.1|2983094_2985203_+	AsmA family protein	NA	NA	NA	NA	NA
AZX94537.1|2985199_2986150_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94538.1|2986253_2986874_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX95614.1|2986977_2987718_+	oxidoreductase	NA	NA	NA	NA	NA
AZX94539.1|2988852_2989977_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94540.1|2990022_2990391_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94541.1|2990632_2991583_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94542.1|2992618_2993161_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94543.1|2993365_2993560_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94544.1|2993546_2994497_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	3183417	3244446	4105345	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZX94695.1|3183417_3184368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94696.1|3184376_3184925_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZX94697.1|3184921_3185530_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX94698.1|3185712_3186183_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX94699.1|3186189_3187449_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX94700.1|3187501_3188314_-	oxidoreductase	NA	NA	NA	NA	NA
AZX94701.1|3188428_3188983_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX94702.1|3188992_3189982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX94703.1|3190161_3190881_-	VOC family protein	NA	NA	NA	NA	NA
AZX94704.1|3190897_3193633_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZX94705.1|3193812_3194799_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZX94706.1|3194840_3195335_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZX94707.1|3195446_3196370_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZX94708.1|3196598_3197783_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZX94709.1|3197971_3199198_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZX94710.1|3199202_3200024_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZX94711.1|3200036_3200987_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZX94712.1|3200983_3202390_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZX94713.1|3202386_3203460_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZX94714.1|3203456_3204650_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZX94715.1|3204646_3206179_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZX94716.1|3206175_3207345_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZX94717.1|3207334_3210172_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
AZX95630.1|3210168_3211869_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZX94718.1|3211895_3212174_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZX94719.1|3212173_3213268_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZX94720.1|3213276_3213768_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZX94721.1|3214507_3216316_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZX94722.1|3216355_3217435_-	dihydroorotase	NA	NA	NA	NA	NA
AZX94723.1|3217431_3218625_-	amidohydrolase	NA	NA	NA	NA	NA
AZX94724.1|3218774_3219053_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZX94725.1|3219381_3219774_-	hypothetical protein	NA	NA	NA	NA	NA
AZX95631.1|3226498_3226975_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX94726.1|3227127_3228240_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZX94727.1|3228307_3228868_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZX94728.1|3228891_3229224_-	cytochrome C	NA	NA	NA	NA	NA
AZX94729.1|3229207_3230896_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX94730.1|3231015_3231804_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZX94731.1|3232511_3233462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94732.1|3233906_3234218_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX94733.1|3234217_3234748_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94734.1|3234910_3235861_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94735.1|3235959_3236910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94736.1|3237199_3237664_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX94737.1|3237678_3239184_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX94738.1|3239437_3241045_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX94739.1|3241100_3242006_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX94740.1|3242446_3243397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94741.1|3243495_3244446_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	3266171	3304586	4105345	transposase,holin	Tupanvirus(16.67%)	36	NA	NA
AZX94763.1|3266171_3266507_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX94764.1|3266506_3267349_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX94765.1|3267447_3268398_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94766.1|3268462_3269434_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94767.1|3269497_3270517_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZX95634.1|3270518_3271892_-	MFS transporter	NA	NA	NA	NA	NA
AZX94768.1|3272169_3272850_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZX94769.1|3272862_3274989_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZX94770.1|3274985_3276080_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZX94771.1|3276094_3277354_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX94772.1|3277373_3279098_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZX94773.1|3279336_3280089_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZX94774.1|3280227_3281178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX95635.1|3281490_3282969_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX94775.1|3282975_3284085_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX94776.1|3284096_3284777_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX94777.1|3284798_3285554_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX95636.1|3285689_3286574_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX94778.1|3286661_3287243_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94779.1|3287335_3287458_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94780.1|3287503_3287803_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX95637.1|3287954_3288380_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94781.1|3290586_3291090_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX94782.1|3291105_3292056_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94783.1|3292042_3292240_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94784.1|3292583_3293357_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94785.1|3293489_3294500_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX94786.1|3294651_3296307_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX94787.1|3296361_3296703_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX94788.1|3296716_3298156_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX94789.1|3298288_3299104_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94790.1|3299122_3299311_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94791.1|3299297_3300248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94792.1|3301635_3302583_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94793.1|3302809_3303550_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94794.1|3303635_3304586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	3379993	3433734	4105345	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZX94846.1|3379993_3380944_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94847.1|3381348_3381993_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX94848.1|3382017_3382602_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX94849.1|3382702_3383320_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX94850.1|3383322_3385038_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX94851.1|3385034_3385343_-	urease subunit beta	NA	NA	NA	NA	NA
AZX94852.1|3385359_3385995_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX94853.1|3386021_3386324_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX94854.1|3386424_3387279_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX94855.1|3387860_3388133_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX94856.1|3388550_3388958_-	GFA family protein	NA	NA	NA	NA	NA
AZX94857.1|3389327_3390122_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94858.1|3390222_3391458_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX94859.1|3391526_3392543_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX94860.1|3392539_3393931_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX94861.1|3393927_3395124_+	MFS transporter	NA	NA	NA	NA	NA
AZX94862.1|3395120_3396659_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX94863.1|3396655_3397915_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94864.1|3399855_3400806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94865.1|3401572_3402667_-	CoA transferase	NA	NA	NA	NA	NA
AZX94866.1|3402659_3403994_-	CoA ligase	NA	NA	NA	NA	NA
AZX94867.1|3403947_3404631_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94868.1|3404656_3405820_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX94869.1|3405816_3406818_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX94870.1|3406817_3407690_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX94871.1|3407686_3408436_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX94872.1|3408432_3409224_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX94873.1|3409220_3410360_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94874.1|3410668_3411421_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX94875.1|3411454_3412237_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX94876.1|3412240_3412630_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX94877.1|3413769_3414633_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX94878.1|3414668_3415757_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94879.1|3415753_3416704_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94880.1|3416690_3417059_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94881.1|3417057_3420036_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94882.1|3420962_3421841_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX94883.1|3423789_3424740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94884.1|3424736_3425204_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX94885.1|3425246_3426017_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX94886.1|3426037_3426838_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX94887.1|3426848_3428258_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX94888.1|3428352_3429138_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX95641.1|3429377_3430394_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX94889.1|3430501_3430894_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX94890.1|3431031_3431712_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX94891.1|3431716_3432715_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX94892.1|3432783_3433734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	3439889	3499189	4105345	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZX94896.1|3439889_3441653_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX94897.1|3441764_3442643_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX94898.1|3442755_3443571_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX94899.1|3443574_3443826_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX94900.1|3443910_3444927_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX94901.1|3445257_3445479_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94902.1|3447839_3448757_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX94903.1|3449254_3450463_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX94904.1|3450542_3452114_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX94905.1|3452231_3453167_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX94906.1|3453355_3454300_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX94907.1|3454368_3454584_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94908.1|3454867_3460585_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX94909.1|3460590_3461718_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX94910.1|3461773_3462400_+	aminotransferase	NA	NA	NA	NA	NA
AZX95642.1|3462671_3463688_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX94911.1|3463783_3464494_-	oxidoreductase	NA	NA	NA	NA	NA
AZX95643.1|3464490_3465480_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX94912.1|3465611_3467207_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX94913.1|3467209_3467947_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94914.1|3468102_3468975_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX94915.1|3469243_3470464_+	MFS transporter	NA	NA	NA	NA	NA
AZX94916.1|3470460_3471120_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX94917.1|3471191_3471824_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX94918.1|3471853_3472372_+	flavin reductase	NA	NA	NA	NA	NA
AZX94919.1|3472382_3473492_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX94920.1|3473538_3474393_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX94921.1|3474394_3475297_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94922.1|3476519_3477470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94923.1|3479226_3480216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94924.1|3480391_3481180_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX94925.1|3481176_3482208_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX94926.1|3482226_3482790_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX94927.1|3482845_3484366_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX94928.1|3484629_3485334_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX94929.1|3485341_3486079_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX94930.1|3486184_3486559_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX94931.1|3486601_3487891_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94932.1|3487887_3489057_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX94933.1|3489053_3489893_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX94934.1|3489952_3490888_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX94935.1|3490900_3491851_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94936.1|3491949_3492912_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX94937.1|3492943_3493303_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX94938.1|3493427_3494330_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX94939.1|3494331_3496104_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX94940.1|3496138_3496915_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX94941.1|3498238_3499189_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025378	Bordetella pertussis strain I692 chromosome, complete genome	4105345	3514127	3572200	4105345	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZX94953.1|3514127_3515078_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94954.1|3515206_3516340_-	peptidase	NA	NA	NA	NA	NA
AZX94955.1|3516383_3517289_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX94956.1|3517291_3518992_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX94957.1|3518988_3519909_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX94958.1|3519916_3520894_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX94959.1|3520952_3521987_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX94960.1|3523961_3524198_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94961.1|3524324_3525188_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX94962.1|3525276_3526098_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX94963.1|3526177_3526915_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX94964.1|3526911_3527904_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX94965.1|3528017_3528680_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94966.1|3528724_3529873_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX94967.1|3532196_3533147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94968.1|3533487_3534438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94969.1|3534536_3535487_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94970.1|3535783_3536281_+	hypothetical protein	NA	NA	NA	NA	NA
AZX94971.1|3536323_3538099_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX95646.1|3538145_3538973_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX94972.1|3538979_3539714_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX94973.1|3540883_3541678_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX94974.1|3541967_3542558_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX94975.1|3542591_3543920_-	amidase	NA	NA	NA	NA	NA
AZX94976.1|3543994_3545140_-	transporter	NA	NA	NA	NA	NA
AZX94977.1|3545251_3546250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94978.1|3546212_3546647_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX94979.1|3548163_3549048_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX94980.1|3549044_3550250_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX94981.1|3550246_3551107_-	endonuclease	NA	NA	NA	NA	NA
AZX94982.1|3551219_3553010_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX94983.1|3553050_3553716_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX94984.1|3553716_3554025_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX95647.1|3554190_3555477_-	hypothetical protein	NA	NA	NA	NA	NA
AZX94985.1|3556910_3557861_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX94986.1|3559812_3561027_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX94987.1|3561132_3562122_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX94988.1|3562118_3562727_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX94989.1|3562739_3563369_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX94990.1|3563365_3563986_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX94991.1|3564017_3564809_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX94992.1|3565651_3566116_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX94993.1|3566134_3567061_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX94994.1|3567114_3568401_-	cytochrome c	NA	NA	NA	NA	NA
AZX94995.1|3569331_3570204_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX94996.1|3570200_3571151_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX94997.1|3571249_3572200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
