The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	0	122073	4105351	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZX77701.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX77702.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX77703.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX77704.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX77705.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX77706.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX77707.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX77708.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX77709.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX77710.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX77711.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX77712.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX77713.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX77714.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX81092.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX77715.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77716.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX77717.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX77718.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77719.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX77720.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77721.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX77722.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX81093.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77723.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX77724.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX77725.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77726.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX77727.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX77728.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX77729.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX77730.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX77731.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX77732.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX77733.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX77734.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX77735.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77736.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77737.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX77738.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77739.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX77740.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX77741.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77742.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX77743.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX77744.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX77745.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX77746.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX77747.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77748.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77749.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX77750.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX77751.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77752.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77753.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX77754.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX77755.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX77756.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX77757.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77758.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77759.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX77760.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX77761.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX77762.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX77763.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81094.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77764.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX77765.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81095.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77766.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX77767.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX77768.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX77769.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX77770.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX77771.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX77772.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX77773.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX77774.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX77775.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX77776.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX77777.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX77778.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77779.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX77780.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX77781.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX77782.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX77783.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77784.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX77785.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX77786.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX77787.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX77788.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX77789.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX77790.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX77791.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX77792.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX77793.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77794.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX77795.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX77796.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX77797.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX81096.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX77798.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81097.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX77799.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX77800.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX77801.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77802.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX77803.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX77804.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	164893	225404	4105351	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX77836.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77837.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77838.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZX77839.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX77840.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX77841.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX77842.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81102.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZX77843.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77844.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZX77845.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZX77846.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX77847.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX77848.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77849.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX77850.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX77851.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX77852.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX77853.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZX77854.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX81103.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX77855.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77856.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX77857.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX77858.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77859.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX77860.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX77861.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX77862.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX77863.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX77864.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77865.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZX77866.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX77867.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77868.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX77869.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZX77870.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX77871.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZX77872.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX77873.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX77874.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX81104.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77875.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX77876.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX77877.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX77878.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX77879.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX77880.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX77881.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX77882.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX77883.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	233336	286924	4105351	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZX77891.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77892.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77893.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77894.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX77895.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX77896.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77897.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX77898.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77899.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX77900.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX77901.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX77902.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX77903.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX77904.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX77905.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX77906.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX77907.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81105.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX77908.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX77909.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX77910.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZX77911.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX77912.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77913.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX77914.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZX77915.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX77916.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77917.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX77918.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX77919.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX77920.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX77921.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX77922.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX77923.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX77924.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX77925.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX77926.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
AZX77927.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX77928.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
AZX77929.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX77930.1|279655_280267_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX77931.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
AZX77932.1|281299_282682_-	cytochrome b	NA	NA	NA	NA	NA
AZX77933.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX77934.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX77935.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX81106.1|284840_285977_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX77936.1|285973_286924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	466027	585347	4105351	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
AZX78090.1|466027_468403_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX78091.1|468501_469452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78092.1|470174_471449_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX78093.1|471535_472618_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX78094.1|472628_473441_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX78095.1|473477_473804_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX78096.1|473808_474369_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX78097.1|474609_475602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX78098.1|475620_476616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78099.1|476631_478008_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX78100.1|478000_480382_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX81121.1|480398_480788_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81122.1|480914_481145_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78101.1|481249_482200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78102.1|482298_483249_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX78103.1|483245_484118_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX78104.1|485048_486335_+	cytochrome c	NA	NA	NA	NA	NA
AZX78105.1|486388_487315_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX78106.1|487333_487798_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX78107.1|488640_489432_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX78108.1|489463_490084_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX78109.1|490080_490710_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX78110.1|490722_491331_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX78111.1|491327_492317_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX78112.1|492422_493637_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX78113.1|495588_496539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81123.1|497972_499259_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78114.1|499424_499733_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX78115.1|499733_500399_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX78116.1|500439_502230_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX78117.1|502342_503203_+	endonuclease	NA	NA	NA	NA	NA
AZX78118.1|503199_504405_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX78119.1|504401_505286_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX78120.1|506802_507237_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX78121.1|507199_508198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78122.1|508309_509455_+	transporter	NA	NA	NA	NA	NA
AZX78123.1|509529_510858_+	amidase	NA	NA	NA	NA	NA
AZX78124.1|510891_511482_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX78125.1|511771_512566_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78126.1|513735_514470_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX81124.1|514476_515304_-	copper resistance protein B	NA	NA	NA	NA	NA
AZX78127.1|515350_517126_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX78128.1|517168_517666_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78129.1|517962_518913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78130.1|519011_519962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78131.1|520302_521253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78132.1|523576_524725_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX78133.1|524769_525432_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78134.1|525545_526538_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX78135.1|526534_527272_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX78136.1|527351_528173_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX78137.1|528261_529125_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX78138.1|529251_529488_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78139.1|531462_532497_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX78140.1|532555_533533_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX78141.1|533540_534461_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX78142.1|534457_536158_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX78143.1|536160_537066_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX78144.1|537109_538243_+	peptidase	NA	NA	NA	NA	NA
AZX78145.1|538371_539322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78146.1|539420_541490_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZX78147.1|541532_543635_-	primosomal protein N'	NA	NA	NA	NA	NA
AZX78148.1|543941_545018_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZX81125.1|545093_545978_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78149.1|546160_546583_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZX78150.1|546592_547993_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZX78151.1|548035_548941_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZX78152.1|549039_550581_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZX78153.1|550615_551155_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZX78154.1|551167_551638_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZX78155.1|551775_552018_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZX78156.1|552134_553016_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZX81126.1|553088_553409_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX78157.1|554260_555211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78158.1|556534_557311_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX78159.1|557345_559118_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX78160.1|559119_560022_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX78161.1|560146_560506_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX78162.1|560537_561500_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX78163.1|561598_562549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78164.1|562561_563497_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX78165.1|563556_564396_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX78166.1|564392_565562_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX78167.1|565558_566848_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78168.1|566890_567265_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX78169.1|567370_568108_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX78170.1|568115_568820_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX78171.1|569083_570604_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX78172.1|570659_571223_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX78173.1|571241_572273_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX78174.1|572269_573058_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX78175.1|573233_574223_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78176.1|575979_576930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78177.1|578152_579055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78178.1|579056_579911_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX78179.1|579957_581067_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX78180.1|581077_581596_-	flavin reductase	NA	NA	NA	NA	NA
AZX78181.1|581625_582258_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX78182.1|582329_582989_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX78183.1|582985_584206_-	MFS transporter	NA	NA	NA	NA	NA
AZX78184.1|584474_585347_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	589761	653594	4105351	transposase,tRNA	Pandoravirus(12.5%)	49	NA	NA
AZX81128.1|589761_590778_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX78188.1|591049_591676_-	aminotransferase	NA	NA	NA	NA	NA
AZX78189.1|591731_592859_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX78190.1|592864_598582_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX78191.1|598865_599081_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78192.1|599149_600094_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX78193.1|600282_601218_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX78194.1|601335_602907_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78195.1|602986_604195_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX78196.1|604692_605610_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX78197.1|607970_608192_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81129.1|608522_609539_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX78198.1|609623_609875_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX78199.1|609878_610694_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX78200.1|610806_611685_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX78201.1|611796_613560_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX78202.1|613675_615016_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX78203.1|616085_617510_-	ATP-binding protein	NA	NA	NA	NA	NA
AZX78204.1|617509_618211_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX78205.1|619715_620666_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78206.1|620734_621733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX78207.1|621737_622418_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX78208.1|622555_622948_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX81130.1|623055_624072_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX78209.1|624311_625097_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX78210.1|625191_626601_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX78211.1|626611_627412_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX78212.1|627432_628203_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX78213.1|628245_628713_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX78214.1|628709_629660_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78215.1|631608_632487_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX78216.1|633413_636392_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78217.1|636390_636759_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78218.1|636745_637696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX78219.1|637692_638781_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78220.1|638816_639680_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX78221.1|640819_641209_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX78222.1|641212_641995_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX78223.1|642028_642781_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX78224.1|643089_644229_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78225.1|644225_645017_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX78226.1|645013_645763_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX78227.1|645759_646632_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX78228.1|646631_647633_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX78229.1|647629_648793_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX78230.1|648818_649502_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78231.1|649455_650790_+	CoA ligase	NA	NA	NA	NA	NA
AZX78232.1|650782_651877_+	CoA transferase	NA	NA	NA	NA	NA
AZX81131.1|652643_653594_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	672505	749814	4105351	integrase,transposase,protease,tRNA	Bacillus_phage(20.0%)	59	719642:719660	739530:739548
AZX78250.1|672505_673456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78251.1|673554_675030_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX78252.1|676617_677505_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX78253.1|677507_678449_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX78254.1|678494_680060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81132.1|681837_683121_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZX78255.1|683345_684803_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZX78256.1|684766_685270_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZX78257.1|685294_686266_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZX78258.1|686318_686756_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX78259.1|686879_687548_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZX78260.1|688276_689380_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX78261.1|689485_690760_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX78262.1|690771_691797_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX78263.1|691798_693169_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78264.1|693169_694306_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX78265.1|694352_696278_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZX78266.1|696274_697396_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX78267.1|697392_698547_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX78268.1|698543_699674_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX78269.1|699681_701247_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX78270.1|701253_702636_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZX78271.1|702914_703526_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78272.1|703617_705033_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX78273.1|705050_705761_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX78274.1|705757_707080_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZX78275.1|707159_709121_+	sulfatase	NA	NA	NA	NA	NA
AZX78276.1|709246_710560_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZX78277.1|710668_711967_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZX78278.1|712149_713058_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78279.1|713067_713277_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZX78280.1|713288_714968_-	oxidoreductase	NA	NA	NA	NA	NA
AZX78281.1|715069_716023_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX78282.1|716113_716941_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZX78283.1|716939_718826_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX78284.1|718822_719422_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZX78285.1|719470_720370_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719642:719660	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX81133.1|720596_721529_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZX78286.1|721651_722266_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZX78287.1|722343_722991_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX78288.1|722987_723770_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX78289.1|723842_724934_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX78290.1|725213_726341_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX78291.1|726682_727729_+	Fic family protein	NA	NA	NA	NA	NA
AZX81134.1|727739_727880_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX78292.1|727876_730996_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX78293.1|730997_733949_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX78294.1|733964_735176_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX78295.1|735172_735373_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78296.1|735359_736310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78297.1|736326_736821_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX78298.1|736824_737082_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78299.1|737106_738537_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX78300.1|738618_738903_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZX78301.1|739686_740637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
739530:739548	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX78302.1|741055_743620_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX78303.1|743664_745518_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78304.1|745850_747422_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX78305.1|748863_749814_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1004104	1098141	4105351	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZX78508.1|1004104_1005055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78509.1|1005157_1005820_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78510.1|1005922_1006333_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78511.1|1006437_1007439_+	amidase	NA	NA	NA	NA	NA
AZX78512.1|1007441_1008638_+	CoA transferase	NA	NA	NA	NA	NA
AZX78513.1|1008658_1009462_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX78514.1|1009542_1009839_+	histidine kinase	NA	NA	NA	NA	NA
AZX78515.1|1009869_1010433_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81153.1|1010473_1011331_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX78516.1|1011338_1012088_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX78517.1|1012109_1012982_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78518.1|1013010_1013790_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX78519.1|1013823_1014621_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78520.1|1016072_1017245_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX78521.1|1017275_1017668_+	RidA family protein	NA	NA	NA	NA	NA
AZX78522.1|1017661_1018522_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX78523.1|1018525_1019488_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81154.1|1020264_1020954_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX78524.1|1021814_1022765_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78525.1|1023114_1023984_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78526.1|1024054_1024750_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX78527.1|1024739_1025249_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX78528.1|1025245_1026466_+	MFS transporter	NA	NA	NA	NA	NA
AZX78529.1|1026413_1027316_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78530.1|1028202_1029489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78531.1|1029527_1030901_+	amidase	NA	NA	NA	NA	NA
AZX78532.1|1030939_1031641_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX78533.1|1031939_1032929_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX78534.1|1033029_1033491_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX78535.1|1033506_1034055_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX78536.1|1034196_1035672_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX78537.1|1035777_1036869_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX78538.1|1036872_1037655_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX78539.1|1037664_1038453_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX78540.1|1039578_1040013_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX78541.1|1040009_1041020_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX78542.1|1041063_1041990_-	VOC family protein	NA	NA	NA	NA	NA
AZX78543.1|1042276_1042645_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX81155.1|1042861_1043812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81156.1|1043793_1046283_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX78544.1|1046331_1047024_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX78545.1|1047096_1048296_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX78546.1|1048313_1049219_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78547.1|1049334_1050264_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX81157.1|1050289_1051636_+	MFS transporter	NA	NA	NA	NA	NA
AZX81158.1|1051663_1052413_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX78548.1|1052426_1053209_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX78549.1|1053401_1054352_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78550.1|1054413_1055559_-	porin	NA	NA	NA	NA	NA
AZX78551.1|1056035_1056872_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX78552.1|1056941_1057907_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78553.1|1057903_1058854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78554.1|1058840_1059035_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78555.1|1059239_1059782_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78556.1|1060817_1061768_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78557.1|1062009_1062378_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78558.1|1062423_1063548_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81159.1|1064682_1065423_-	oxidoreductase	NA	NA	NA	NA	NA
AZX78559.1|1065526_1066147_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78560.1|1066250_1067201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78561.1|1067197_1069306_-	AsmA family protein	NA	NA	NA	NA	NA
AZX78562.1|1069450_1070110_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX81160.1|1070141_1070606_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX78563.1|1070881_1071067_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78564.1|1071118_1071871_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX78565.1|1071877_1073140_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78566.1|1073181_1074420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78567.1|1075497_1076625_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX78568.1|1076635_1077463_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX78569.1|1077449_1078316_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX78570.1|1079682_1080087_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78571.1|1080178_1081129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81161.1|1081498_1082410_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX78572.1|1082424_1083135_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78573.1|1083131_1084376_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX78574.1|1084377_1084812_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX78575.1|1084840_1085146_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX78576.1|1085039_1085258_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78577.1|1085244_1086195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78578.1|1086251_1087400_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX78579.1|1087480_1088431_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78580.1|1088962_1089760_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78581.1|1089807_1090461_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX78582.1|1090417_1091506_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX78583.1|1091670_1093896_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX78584.1|1096173_1097070_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX78585.1|1096958_1097204_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78586.1|1097190_1098141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1128527	1199498	4105351	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX78616.1|1128527_1129478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78617.1|1129534_1130647_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX78618.1|1133030_1133981_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78619.1|1134571_1135348_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX78620.1|1135465_1135729_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX78621.1|1135829_1136834_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX78622.1|1137034_1138636_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX78623.1|1138661_1139420_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX78624.1|1139511_1140168_-	adenylate kinase	NA	NA	NA	NA	NA
AZX78625.1|1140258_1141023_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX78626.1|1141032_1141221_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78627.1|1141276_1142320_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX78628.1|1142316_1142730_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX78629.1|1142726_1143347_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX78630.1|1143627_1144578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78631.1|1144745_1146137_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX78632.1|1146209_1146788_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX78633.1|1146904_1148302_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX78634.1|1148417_1149623_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX78635.1|1149722_1150241_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX78636.1|1150335_1150581_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX78637.1|1150808_1151123_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX78638.1|1151212_1156402_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX81162.1|1156398_1158567_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX78639.1|1158586_1160938_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX78640.1|1160942_1162262_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX78641.1|1162280_1163954_+	MCE family protein	NA	NA	NA	NA	NA
AZX78642.1|1163958_1164627_+	lipoprotein	NA	NA	NA	NA	NA
AZX78643.1|1164783_1168605_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX78644.1|1168935_1169886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78645.1|1169907_1171053_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78646.1|1171201_1172131_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX78647.1|1172127_1173216_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX78648.1|1173212_1174016_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX78649.1|1174012_1174744_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX78650.1|1174801_1176091_-	MFS transporter	NA	NA	NA	NA	NA
AZX78651.1|1176187_1176790_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78652.1|1181343_1181682_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX78653.1|1182350_1182656_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78654.1|1184362_1185313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78655.1|1185309_1186641_-	MFS transporter	NA	NA	NA	NA	NA
AZX78656.1|1187880_1189902_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX78657.1|1189894_1190536_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX78658.1|1190532_1190940_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX78659.1|1190936_1191737_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX78660.1|1191811_1192516_+	oxidoreductase	NA	NA	NA	NA	NA
AZX78661.1|1192547_1193342_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX78662.1|1193338_1194289_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78663.1|1194387_1195338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78664.1|1195436_1195871_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX78665.1|1195953_1198290_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX81163.1|1198481_1199498_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1246892	1323754	4105351	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
AZX78704.1|1246892_1247843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78705.1|1247839_1248790_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78706.1|1248776_1249127_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78707.1|1249050_1250079_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX78708.1|1250158_1251457_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX78709.1|1251453_1252035_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX78710.1|1252347_1256394_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX78711.1|1256634_1264296_+	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX78712.1|1264292_1265243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78713.1|1266382_1266856_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78714.1|1266995_1267616_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX78715.1|1267751_1268552_+	aldolase	NA	NA	NA	NA	NA
AZX78716.1|1268606_1269698_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78717.1|1269719_1270163_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX78718.1|1270191_1270824_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX78719.1|1270934_1271351_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX78720.1|1271343_1272036_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
AZX78721.1|1272142_1272517_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78722.1|1272593_1273403_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78723.1|1273498_1274443_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AZX78724.1|1274481_1275453_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX78725.1|1275543_1275981_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
AZX78726.1|1276039_1276921_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78727.1|1277924_1278785_+	amidohydrolase	NA	NA	NA	NA	NA
AZX78728.1|1278817_1280200_+	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AZX81168.1|1280196_1281216_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX78729.1|1281588_1282083_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78730.1|1282090_1282831_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78731.1|1282911_1284516_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
AZX78732.1|1284555_1285365_-	HTH domain-containing protein	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
AZX78733.1|1285469_1287635_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
AZX78734.1|1288515_1289328_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX78735.1|1289340_1289649_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78736.1|1289766_1291497_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78737.1|1291498_1292644_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78738.1|1292773_1293442_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78739.1|1293563_1294031_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX78740.1|1294166_1295549_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZX78741.1|1295545_1296670_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX78742.1|1296666_1299303_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX78743.1|1299718_1300669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78744.1|1304415_1305027_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX78745.1|1305249_1306710_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX78746.1|1306806_1308399_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX78747.1|1308385_1308664_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78748.1|1308722_1309010_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX78749.1|1309011_1310352_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX78750.1|1310447_1311137_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78751.1|1311149_1312580_+	MFS transporter	NA	NA	NA	NA	NA
AZX78752.1|1314304_1315126_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78753.1|1315136_1316708_+	amidohydrolase	NA	NA	NA	NA	NA
AZX78754.1|1316736_1317714_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78755.1|1317740_1318544_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX78756.1|1318540_1319335_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX78757.1|1319342_1320578_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX78758.1|1320570_1321005_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX78759.1|1321754_1322705_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78760.1|1322803_1323754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1327865	1368533	4105351	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AZX78764.1|1327865_1328816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78765.1|1328856_1329927_+	FUSC family protein	NA	NA	NA	NA	NA
AZX78766.1|1329949_1330828_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX78767.1|1330999_1331971_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX78768.1|1332133_1332976_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78769.1|1333137_1333818_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX78770.1|1333811_1334981_+	amine oxidase	NA	NA	NA	NA	NA
AZX78771.1|1334977_1336009_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX78772.1|1336052_1337294_+	MFS transporter	NA	NA	NA	NA	NA
AZX78773.1|1337328_1338861_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX78774.1|1338941_1339565_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX78775.1|1339595_1340207_+	LysE family translocator	NA	NA	NA	NA	NA
AZX78776.1|1340242_1340713_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX78777.1|1340887_1341136_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78778.1|1341143_1342148_+	peptidase M20	NA	NA	NA	NA	NA
AZX78779.1|1342184_1343699_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX78780.1|1343702_1344662_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX78781.1|1344690_1345494_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX78782.1|1345495_1347130_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX78783.1|1347213_1348275_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX78784.1|1348473_1348743_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78785.1|1348746_1349271_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX78786.1|1349686_1350637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78787.1|1350633_1351704_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX78788.1|1351776_1352415_+	DedA family protein	NA	NA	NA	NA	NA
AZX78789.1|1352709_1352937_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX78790.1|1353059_1353773_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX78791.1|1354017_1354968_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78792.1|1355071_1355353_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78793.1|1355467_1356916_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX78794.1|1357026_1357977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78795.1|1357973_1358423_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX78796.1|1358442_1358631_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78797.1|1358617_1359568_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78798.1|1359903_1360101_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX78799.1|1360116_1360476_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX78800.1|1360550_1361573_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX78801.1|1361585_1364003_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX78802.1|1364008_1364350_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX78803.1|1364408_1364819_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX78804.1|1365318_1366410_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78805.1|1366593_1367190_+	lipoprotein	NA	NA	NA	NA	NA
AZX78806.1|1367289_1367472_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78807.1|1367582_1368533_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1448210	1500363	4105351	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZX78876.1|1448210_1449161_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78877.1|1449327_1449681_+	cytochrome C	NA	NA	NA	NA	NA
AZX78878.1|1449693_1450056_+	cytochrome	NA	NA	NA	NA	NA
AZX78879.1|1450097_1450523_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX78880.1|1450725_1451982_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX78881.1|1452180_1453161_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78882.1|1453310_1454552_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78883.1|1454650_1455601_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78884.1|1455609_1456305_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX78885.1|1459126_1459726_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX78886.1|1459736_1461902_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX78887.1|1461925_1463710_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX78888.1|1463709_1463799_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX78889.1|1464493_1464766_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX78890.1|1464765_1466832_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX78891.1|1466828_1467779_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78892.1|1467877_1468828_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78893.1|1468943_1469276_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX78894.1|1469272_1469959_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX78895.1|1469945_1470905_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX81176.1|1470946_1473307_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX78896.1|1473306_1473939_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX78897.1|1474001_1475381_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX78898.1|1475427_1476783_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX78899.1|1477061_1477310_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78900.1|1477497_1477815_-	virulence factor	NA	NA	NA	NA	NA
AZX78901.1|1478087_1478603_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX78902.1|1478696_1478858_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78903.1|1478873_1479629_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX78904.1|1479967_1480174_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78905.1|1480181_1480841_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX78906.1|1481135_1483340_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX78907.1|1483450_1484674_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX78908.1|1484796_1485771_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX78909.1|1485838_1487032_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX78910.1|1487046_1487847_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX78911.1|1487843_1489700_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX78912.1|1489696_1490302_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX78913.1|1490320_1491706_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX78914.1|1492431_1493658_+	transporter	NA	NA	NA	NA	NA
AZX78915.1|1493746_1494529_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX78916.1|1494627_1495578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78917.1|1495604_1496378_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX78918.1|1496389_1497631_+	MFS transporter	NA	NA	NA	NA	NA
AZX78919.1|1499412_1500363_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1544288	1603150	4105351	tRNA,protease,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZX81177.1|1544288_1544777_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX78967.1|1544894_1545473_+|protease	protease	protease	NA	NA	NA	NA
AZX78968.1|1545545_1545947_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX78969.1|1546045_1546996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78970.1|1547002_1548115_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX78971.1|1548801_1550004_+	MFS transporter	NA	NA	NA	NA	NA
AZX78972.1|1550207_1552868_+	hypothetical protein	NA	NA	NA	NA	NA
AZX78973.1|1552880_1556285_+	nuclease	NA	NA	NA	NA	NA
AZX78974.1|1556952_1559178_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX78975.1|1559224_1559551_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX78976.1|1559601_1560210_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX78977.1|1560308_1561259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78978.1|1561328_1562093_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX78979.1|1562089_1562689_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81178.1|1562792_1563638_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX78980.1|1563703_1564330_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX78981.1|1564326_1565277_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78982.1|1565263_1565452_-	hypothetical protein	NA	NA	NA	NA	NA
AZX78983.1|1565375_1566497_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX78984.1|1566477_1567479_-	aminopeptidase	NA	NA	NA	NA	NA
AZX78985.1|1567584_1569096_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX78986.1|1569092_1570397_-	peptidase	NA	NA	NA	NA	NA
AZX78987.1|1570508_1571069_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX78988.1|1571336_1571891_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX78989.1|1572346_1572562_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX81179.1|1572816_1575414_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX78990.1|1575410_1576598_+	cupin	NA	NA	NA	NA	NA
AZX78991.1|1577255_1577870_+	fimbrial protein	NA	NA	NA	NA	NA
AZX78992.1|1577958_1579086_-	lipoprotein	NA	NA	NA	NA	NA
AZX78993.1|1579097_1580003_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX78994.1|1580895_1581846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX78995.1|1582027_1582780_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX78996.1|1582848_1583508_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX78997.1|1583504_1584233_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX78998.1|1584245_1586525_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX78999.1|1586549_1586753_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX79000.1|1586794_1587442_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX79001.1|1587562_1588480_-	cytochrome C	NA	NA	NA	NA	NA
AZX79002.1|1588476_1589190_-	cytochrome C	NA	NA	NA	NA	NA
AZX79003.1|1589427_1590198_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79004.1|1590202_1590802_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX79005.1|1591046_1592537_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX79006.1|1592595_1592880_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX79007.1|1592876_1593005_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79008.1|1593017_1593173_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79009.1|1593445_1594372_-	YicC family protein	NA	NA	NA	NA	NA
AZX79010.1|1594508_1595249_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX79011.1|1595415_1596792_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX79012.1|1596973_1597879_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX79013.1|1597913_1599653_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX79014.1|1599530_1601333_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX79015.1|1601450_1602101_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX79016.1|1602199_1603150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1648322	1703913	4105351	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX79047.1|1648322_1649273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79048.1|1649331_1650105_+	oxidoreductase	NA	NA	NA	NA	NA
AZX79049.1|1650097_1651654_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX79050.1|1651650_1652601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79051.1|1653927_1654530_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79052.1|1654769_1655471_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX79053.1|1655464_1656247_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX79054.1|1656431_1657382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79055.1|1657480_1658218_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX79056.1|1658407_1659166_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79057.1|1659212_1660202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79058.1|1660379_1661348_-	transporter	NA	NA	NA	NA	NA
AZX79059.1|1662887_1663856_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX79060.1|1663864_1664806_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX79061.1|1665279_1666290_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81183.1|1666280_1667795_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX79062.1|1667791_1669138_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81184.1|1669140_1670175_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX79063.1|1670224_1671850_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX79064.1|1672402_1673353_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79065.1|1673457_1674405_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81185.1|1674458_1676273_-	histidine kinase	NA	NA	NA	NA	NA
AZX79066.1|1676265_1676940_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX79067.1|1677069_1680144_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX79068.1|1680157_1680457_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX81186.1|1680771_1681395_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX79069.1|1681638_1682508_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX79070.1|1682485_1683430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81187.1|1683515_1684487_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81188.1|1684554_1685328_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79071.1|1685324_1686521_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX79072.1|1686551_1687502_-	hydrolase	NA	NA	NA	NA	NA
AZX79073.1|1687723_1688413_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX79074.1|1688477_1689233_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79075.1|1689284_1690277_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79076.1|1690286_1691240_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81189.1|1691355_1692318_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79077.1|1693719_1694148_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79078.1|1694144_1695095_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81190.1|1695388_1696111_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX79079.1|1696549_1697737_-	MFS transporter	NA	NA	NA	NA	NA
AZX79080.1|1697740_1698121_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79081.1|1699840_1700812_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79082.1|1700825_1701539_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79083.1|1701543_1702461_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79084.1|1702567_1702864_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79085.1|1702962_1703913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	1936676	2068269	4105351	tRNA,transposase	uncultured_Caudovirales_phage(16.67%)	114	NA	NA
AZX79259.1|1936676_1939334_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX79260.1|1939411_1940614_-	MFS transporter	NA	NA	NA	NA	NA
AZX79261.1|1940610_1941123_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81199.1|1941245_1941584_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX79262.1|1941959_1942910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79263.1|1943008_1943959_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79264.1|1944122_1946018_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX79265.1|1946131_1946299_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX79266.1|1946362_1946599_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX79267.1|1946967_1948167_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX79268.1|1949682_1950633_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79269.1|1951084_1952086_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79270.1|1952258_1953116_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX79271.1|1953112_1954375_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX79272.1|1954475_1954850_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX79273.1|1954898_1956110_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX79274.1|1956194_1956965_+	spermidine synthase	NA	NA	NA	NA	NA
AZX79275.1|1957078_1957843_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81200.1|1957958_1959095_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX79276.1|1959091_1959898_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX79277.1|1961642_1962614_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79278.1|1962770_1963283_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX79279.1|1963441_1964416_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79280.1|1965416_1966211_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX81201.1|1966236_1967043_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX79281.1|1967153_1967744_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX79282.1|1967754_1968933_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79283.1|1969035_1969410_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX79284.1|1969662_1970994_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX79285.1|1971060_1974291_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX79286.1|1975781_1976528_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX79287.1|1976612_1977074_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX79288.1|1977111_1978170_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX79289.1|1978132_1979962_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX79290.1|1980001_1980574_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX79291.1|1981998_1982910_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX79292.1|1983138_1984461_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX79293.1|1984506_1984890_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79294.1|1984820_1985456_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79295.1|1985415_1986366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79296.1|1987236_1988109_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX79297.1|1988186_1989326_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79298.1|1989675_1990941_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX79299.1|1990946_1991474_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX79300.1|1991478_1992297_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX79301.1|1992296_1993019_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79302.1|1993040_1993355_+	ferredoxin	NA	NA	NA	NA	NA
AZX79303.1|1993351_1994521_+	CoA transferase	NA	NA	NA	NA	NA
AZX79304.1|1994551_1995427_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX79305.1|1995423_1996743_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX79306.1|1996815_1998012_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX79307.1|1998022_1999510_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79308.1|2002104_2003004_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79309.1|2003141_2004107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79310.1|2004205_2005156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79311.1|2005254_2006205_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79312.1|2006248_2006440_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79313.1|2006426_2007377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79314.1|2007373_2007676_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZX79315.1|2007835_2008240_+	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZX79316.1|2008232_2009459_+	NnrS family protein	NA	NA	NA	NA	NA
AZX79317.1|2009455_2009902_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79318.1|2009971_2010754_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZX79319.1|2010795_2012301_+	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX81202.1|2012586_2013381_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79320.1|2014857_2015679_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX79321.1|2015697_2016552_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZX79322.1|2016555_2017527_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79323.1|2017601_2018240_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79324.1|2018211_2018388_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79325.1|2018873_2019824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79326.1|2020961_2021258_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79327.1|2021432_2022785_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX81203.1|2022927_2023944_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX81204.1|2025923_2026937_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX79328.1|2027023_2027929_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79329.1|2028085_2028430_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79330.1|2028587_2029046_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX79331.1|2029059_2031276_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX79332.1|2031272_2032334_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79333.1|2032362_2033337_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX79334.1|2033288_2034107_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX79335.1|2034119_2034728_-	peptidase S16	NA	NA	NA	NA	NA
AZX79336.1|2034902_2035298_+	VOC family protein	NA	NA	NA	NA	NA
AZX79337.1|2035316_2036756_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX79338.1|2036784_2037132_+	GFA family protein	NA	NA	NA	NA	NA
AZX79339.1|2037150_2038101_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79340.1|2038753_2039704_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79341.1|2039787_2041605_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX79342.1|2041678_2042326_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79343.1|2042338_2043268_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX79344.1|2043437_2043902_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79345.1|2044149_2044830_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79346.1|2044878_2046570_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX79347.1|2046585_2047137_-	ATPase	NA	NA	NA	NA	NA
AZX79348.1|2047133_2047505_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX79349.1|2047617_2048454_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX79350.1|2048464_2048989_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX79351.1|2049086_2049266_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX79352.1|2049395_2050427_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX79353.1|2050500_2050857_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX81205.1|2050846_2051722_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX79354.1|2051820_2052705_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79355.1|2052726_2054022_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX79356.1|2054970_2055621_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX81206.1|2055708_2057229_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX79357.1|2057486_2059352_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX79358.1|2060397_2061348_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79359.1|2062320_2062680_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX79360.1|2062667_2064104_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX79361.1|2064100_2064754_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX79362.1|2064750_2065950_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX79363.1|2066047_2067322_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX79364.1|2067318_2068269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	2079473	2120164	4105351	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
AZX79378.1|2079473_2080424_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79379.1|2080522_2081473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79380.1|2081432_2081846_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX79381.1|2082130_2082430_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81208.1|2082839_2085008_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX79382.1|2085807_2087838_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX79383.1|2087857_2088070_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX79384.1|2088347_2088887_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX79385.1|2089000_2090308_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX79386.1|2090372_2091530_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX79387.1|2091713_2092613_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX79388.1|2092631_2093936_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX79389.1|2093901_2095008_-	GTPase HflX	NA	NA	NA	NA	NA
AZX79390.1|2095095_2095332_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX79391.1|2095470_2096541_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX79392.1|2096544_2097900_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX79393.1|2097926_2099087_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX79394.1|2099089_2099728_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79395.1|2099729_2101034_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX79396.1|2101074_2102370_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX79397.1|2102376_2102883_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX79398.1|2102879_2104028_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX79399.1|2104055_2104481_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX79400.1|2104803_2107686_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX79401.1|2107778_2108534_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX79402.1|2109299_2110649_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX79403.1|2110747_2111698_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79404.1|2111796_2112747_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79405.1|2112820_2113294_+	RidA family protein	NA	NA	NA	NA	NA
AZX79406.1|2113319_2114528_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX79407.1|2114524_2115298_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX79408.1|2115297_2115921_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX79409.1|2116086_2116347_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX79410.1|2116650_2117232_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79411.1|2117298_2117553_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX79412.1|2117539_2120164_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	2147947	2203183	4105351	transposase,protease	Lake_Baikal_phage(25.0%)	50	NA	NA
AZX79432.1|2147947_2148898_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79433.1|2149098_2149908_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX79434.1|2150032_2150983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79435.1|2150979_2151873_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX79436.1|2151997_2152192_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX79437.1|2152191_2152533_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX79438.1|2152542_2154405_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX79439.1|2154534_2155047_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX79440.1|2155049_2155373_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX79441.1|2155374_2155785_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX79442.1|2155822_2157034_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX79443.1|2157051_2157564_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX79444.1|2157779_2158271_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX79445.1|2158523_2160560_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX79446.1|2160637_2161840_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX79447.1|2161890_2162619_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX79448.1|2164176_2165127_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79449.1|2165697_2165910_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79450.1|2165927_2166659_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79451.1|2166693_2167335_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX79452.1|2167327_2168044_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX79453.1|2170208_2170985_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX79454.1|2171006_2172164_-	thiolase	NA	NA	NA	NA	NA
AZX79455.1|2172160_2172592_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79456.1|2172588_2173392_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX79457.1|2173405_2173861_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX79458.1|2173873_2174845_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79459.1|2174910_2176134_-	CoA transferase	NA	NA	NA	NA	NA
AZX79460.1|2176361_2177312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79461.1|2177435_2179889_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX79462.1|2180077_2181382_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX79463.1|2181486_2182140_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX79464.1|2182142_2183453_-	trigger factor	NA	NA	NA	NA	NA
AZX79465.1|2183631_2184210_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX79466.1|2184321_2184522_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX79467.1|2184867_2185434_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX79468.1|2185517_2185721_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX79469.1|2186027_2186348_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79470.1|2186389_2186671_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79471.1|2186745_2188002_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX79472.1|2188384_2188714_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX79473.1|2190284_2191106_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX79474.1|2191105_2192245_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX79475.1|2192251_2193148_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX79476.1|2193144_2195070_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX79477.1|2195429_2198042_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX79478.1|2198094_2200395_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX79479.1|2200391_2201600_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX79480.1|2201861_2202236_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79481.1|2202232_2203183_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	2206290	2260560	4105351	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
AZX79484.1|2206290_2209152_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX79485.1|2209154_2209661_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX79486.1|2209765_2210974_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX79487.1|2210975_2211914_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79488.1|2212075_2212549_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX79489.1|2212545_2213496_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79490.1|2213482_2213662_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79491.1|2213606_2214047_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX79492.1|2214175_2215405_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX79493.1|2215443_2216265_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX79494.1|2216318_2217470_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX79495.1|2217561_2218050_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX79496.1|2220576_2223150_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX79497.1|2223220_2225794_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX79498.1|2226059_2226260_+	CsbD family protein	NA	NA	NA	NA	NA
AZX79499.1|2226291_2226453_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX79500.1|2226510_2226849_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX79501.1|2226997_2227948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79502.1|2228046_2228997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79503.1|2229095_2229815_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX81210.1|2229891_2230440_+	arylesterase	NA	NA	NA	NA	NA
AZX79504.1|2230421_2232437_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX79505.1|2232619_2233369_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX79506.1|2233381_2234245_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX79507.1|2234248_2235664_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX79508.1|2235797_2236526_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX79509.1|2236664_2236865_-	copper chaperone	NA	NA	NA	NA	NA
AZX79510.1|2237040_2237439_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX79511.1|2237462_2238863_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX81211.1|2238981_2239734_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79512.1|2240022_2240700_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79513.1|2240726_2241506_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX79514.1|2241502_2242387_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX81212.1|2242404_2243094_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX79515.1|2243168_2243927_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX79516.1|2244052_2244700_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX81213.1|2244967_2245984_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX79517.1|2246081_2247122_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX79518.1|2247256_2248549_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX79519.1|2249908_2250292_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX79520.1|2250309_2250897_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX79521.1|2250934_2251885_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79522.1|2251983_2252544_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX79523.1|2252540_2253086_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79524.1|2253281_2254310_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79525.1|2254350_2255691_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX79526.1|2255799_2256804_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79527.1|2256910_2259511_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX79528.1|2259609_2260560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	2507143	2565387	4105351	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZX79734.1|2507143_2508094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79735.1|2508573_2509230_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX79736.1|2509244_2510912_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX79737.1|2510914_2511544_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79738.1|2511755_2512850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79739.1|2512994_2513807_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX79740.1|2513810_2515514_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX79741.1|2515564_2516695_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX79742.1|2516881_2517958_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX81225.1|2518039_2518690_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX79743.1|2518704_2520138_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX79744.1|2520391_2521210_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79745.1|2521206_2521911_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX79746.1|2522810_2523926_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79747.1|2523959_2524334_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79748.1|2524356_2525514_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX79749.1|2525526_2525760_-	lipoprotein	NA	NA	NA	NA	NA
AZX79750.1|2526394_2529364_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX79751.1|2529378_2529588_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX79752.1|2529739_2530369_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79753.1|2530365_2532483_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX79754.1|2532479_2533160_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX79755.1|2533156_2533717_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX79756.1|2533723_2534821_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX79757.1|2534958_2535567_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX79758.1|2535563_2536856_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX79759.1|2536869_2537412_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX79760.1|2537421_2538258_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX79761.1|2538291_2539353_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX79762.1|2539394_2540447_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX79763.1|2540462_2540765_-	hypothetical protein	NA	NA	NA	NA	NA
AZX79764.1|2540906_2541857_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79765.1|2542035_2543730_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX79766.1|2543726_2544812_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX79767.1|2544859_2545759_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79768.1|2545769_2546414_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX79769.1|2547435_2550678_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX79770.1|2550688_2551786_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX79771.1|2552048_2553032_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX79772.1|2553130_2554081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79773.1|2554179_2555130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79774.1|2555139_2555829_-	VIT family protein	NA	NA	NA	NA	NA
AZX79775.1|2555888_2556326_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX79776.1|2556371_2557265_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX79777.1|2557312_2558485_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX79778.1|2558481_2559636_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX79779.1|2559832_2560183_-	RnfH family protein	NA	NA	NA	NA	NA
AZX79780.1|2560172_2560607_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX79781.1|2560623_2561574_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79782.1|2561721_2562189_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX79783.1|2562169_2563327_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX79784.1|2563392_2564319_-	paraslipin	NA	NA	NA	NA	NA
AZX79785.1|2564436_2565387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	2607667	2674167	4105351	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX79824.1|2607667_2608618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79825.1|2608987_2609560_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX79826.1|2609562_2610573_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX79827.1|2610565_2611066_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX79828.1|2611076_2611418_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX79829.1|2611429_2612221_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX79830.1|2612237_2612507_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX79831.1|2612529_2613318_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX81229.1|2613364_2614381_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX79832.1|2614597_2616040_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX79833.1|2616218_2617838_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX79834.1|2617958_2619779_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX79835.1|2619857_2621390_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX79836.1|2621423_2623070_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX79837.1|2623139_2624162_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX79838.1|2624179_2625313_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX79839.1|2625315_2626005_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX79840.1|2626004_2626790_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX79841.1|2626833_2627598_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX79842.1|2627636_2629058_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX79843.1|2629123_2629828_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX79844.1|2629875_2630295_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX79845.1|2630307_2630715_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX81230.1|2630898_2631609_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX79846.1|2631735_2632026_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX79847.1|2632043_2632526_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX79848.1|2637031_2638186_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX81231.1|2638491_2639508_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX79849.1|2639754_2640543_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX79850.1|2640609_2641290_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX79851.1|2641286_2642057_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX79852.1|2642155_2643106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX79853.1|2643161_2644079_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX79854.1|2644089_2645268_-	mandelate racemase	NA	NA	NA	NA	NA
AZX79855.1|2645287_2646283_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79856.1|2647871_2648480_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX79857.1|2648467_2649508_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX79858.1|2649525_2650488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79859.1|2650484_2651678_-	CoA transferase	NA	NA	NA	NA	NA
AZX79860.1|2651674_2652472_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX79861.1|2652497_2653484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX79862.1|2653502_2655542_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX81232.1|2655743_2656424_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79863.1|2656437_2657349_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX79864.1|2657345_2657924_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX79865.1|2658062_2658968_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79866.1|2658975_2662395_+	nuclease	NA	NA	NA	NA	NA
AZX79867.1|2662382_2664983_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX79868.1|2665938_2666571_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX79869.1|2666964_2667723_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79870.1|2667719_2668922_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX79871.1|2669109_2670060_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX79872.1|2670967_2672113_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX81233.1|2672132_2672855_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX79873.1|2672971_2673151_+	hypothetical protein	NA	NA	NA	NA	NA
AZX79874.1|2673216_2674167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	2878288	2959564	4105351	transposase,tRNA	Planktothrix_phage(16.67%)	59	NA	NA
AZX80038.1|2878288_2879239_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80039.1|2879235_2880138_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80040.1|2880225_2880984_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX80041.1|2880996_2882145_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX80042.1|2882185_2883613_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX80043.1|2883842_2885057_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX80044.1|2885102_2887973_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX80045.1|2890383_2890872_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX80046.1|2890997_2893694_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX80047.1|2893848_2896131_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX80048.1|2896294_2896927_+	fimbrial protein	NA	NA	NA	NA	NA
AZX80049.1|2897025_2897976_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX80050.1|2898022_2898577_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX80051.1|2898644_2899490_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX80052.1|2899559_2900528_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX80053.1|2900527_2902324_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80054.1|2904223_2908150_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX80055.1|2908440_2908617_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80056.1|2908885_2912116_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX80057.1|2912397_2913225_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX80058.1|2913258_2913954_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX80059.1|2913946_2915227_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX80060.1|2915236_2916214_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81249.1|2916195_2917896_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX80061.1|2917998_2919102_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX80062.1|2919132_2919888_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX80063.1|2919894_2921415_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX80064.1|2921457_2921760_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80065.1|2921756_2922389_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80066.1|2922467_2924333_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX80067.1|2924329_2925145_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX80068.1|2925152_2926268_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX80069.1|2927172_2928051_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX80070.1|2928050_2928875_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX80071.1|2929042_2929993_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80072.1|2930175_2933055_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX80073.1|2933036_2933813_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX80074.1|2933905_2935369_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX80075.1|2935365_2935737_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX80076.1|2935754_2937068_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80077.1|2937104_2937563_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX80078.1|2937675_2938626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80079.1|2938622_2939636_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX80080.1|2939775_2940762_+	homoserine kinase	NA	NA	NA	NA	NA
AZX80081.1|2940805_2941606_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80082.1|2942408_2943359_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80083.1|2943510_2944113_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80084.1|2944131_2944764_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX80085.1|2945001_2946888_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX80086.1|2946906_2947749_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX80087.1|2947745_2949104_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX80088.1|2949324_2950119_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX80089.1|2950349_2951843_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX80090.1|2952078_2954160_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX80091.1|2954354_2955395_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX80092.1|2955529_2956546_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX80093.1|2956567_2957425_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX81250.1|2957469_2958246_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX80094.1|2958613_2959564_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	2968632	3017570	4105351	transposase,holin,tRNA	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZX80102.1|2968632_2969046_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX80103.1|2969086_2969404_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX80104.1|2969488_2970205_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81251.1|2970468_2971890_+	siroheme synthase	NA	NA	NA	NA	NA
AZX80105.1|2971956_2974704_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZX81252.1|2975036_2976053_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX81253.1|2976388_2977030_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX80106.1|2977120_2978557_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX80107.1|2978714_2979788_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX80108.1|2979784_2980921_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX80109.1|2981065_2981410_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX80110.1|2981476_2983357_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX80111.1|2983406_2984342_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX81254.1|2984674_2985691_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX80112.1|2986628_2988056_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX80113.1|2988052_2989075_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX80114.1|2989064_2989538_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX80115.1|2989663_2990566_+	transporter associated domain protein	NA	NA	NA	NA	NA
AZX80116.1|2990562_2992206_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX81255.1|2992202_2993210_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX81256.1|2994040_2995057_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX80117.1|2995156_2995789_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX80118.1|2995797_2996187_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX80119.1|2996239_2997292_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX80120.1|2998155_2999862_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX80121.1|2999935_3000436_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX80122.1|3000450_3002508_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX80123.1|3002534_3002828_-	response regulator	NA	NA	NA	NA	NA
AZX80124.1|3002929_3003877_-	motility protein MotB	NA	NA	NA	NA	NA
AZX80125.1|3003889_3004765_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX80126.1|3004885_3005446_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX80127.1|3005480_3005804_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX80128.1|3006239_3006977_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX80129.1|3007275_3008226_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80130.1|3008469_3008733_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX80131.1|3008806_3009088_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80132.1|3009104_3009965_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX80133.1|3009961_3010297_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80134.1|3010350_3011001_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX80135.1|3012681_3013626_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80136.1|3013671_3013989_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80137.1|3013991_3014930_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX80138.1|3015107_3015593_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX80139.1|3015611_3016160_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX80140.1|3016436_3017570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	3029177	3101671	4105351	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZX80149.1|3029177_3030128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80150.1|3030170_3031346_+	flagellin FliC	NA	NA	NA	NA	NA
AZX80151.1|3031567_3033358_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX80152.1|3033370_3035032_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX80153.1|3035044_3037750_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX80154.1|3038042_3039797_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX80155.1|3039793_3040420_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX80156.1|3040416_3041268_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX80157.1|3041343_3043458_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX80158.1|3043608_3044259_+	SCO family protein	NA	NA	NA	NA	NA
AZX80159.1|3044404_3044656_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX80160.1|3044725_3046108_-	multidrug transporter	NA	NA	NA	NA	NA
AZX80161.1|3046104_3049284_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX81258.1|3050091_3051009_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80162.1|3051060_3051792_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX80163.1|3051851_3052424_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX81259.1|3053932_3054949_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX80164.1|3055086_3056136_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX80165.1|3056240_3057191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80166.1|3057286_3058012_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX80167.1|3058222_3058603_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX80168.1|3058908_3059781_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX80169.1|3059788_3060169_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80170.1|3060322_3061597_-	radical SAM protein	NA	NA	NA	NA	NA
AZX81260.1|3063084_3063993_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX80171.1|3064790_3065855_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX80172.1|3067691_3068726_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX80173.1|3068915_3069557_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX80174.1|3069639_3071466_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX80175.1|3071709_3072639_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX80176.1|3072638_3073388_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX80177.1|3073459_3074374_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX80178.1|3074393_3075539_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX80179.1|3075599_3076511_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX80180.1|3076591_3077542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80181.1|3077640_3078225_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX80182.1|3078259_3079249_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX80183.1|3079245_3080187_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX80184.1|3080183_3081404_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX80185.1|3081446_3081761_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX80186.1|3081952_3082312_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX80187.1|3082313_3084044_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX80188.1|3084216_3084888_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX80189.1|3084902_3086231_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX80190.1|3086227_3087127_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX80191.1|3087213_3088299_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX80192.1|3088291_3089425_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX80193.1|3089424_3092106_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX80194.1|3092476_3093058_+	OmpA family protein	NA	NA	NA	NA	NA
AZX80195.1|3093135_3093909_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX80196.1|3093905_3094583_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX80197.1|3094798_3095980_+	MFS transporter	NA	NA	NA	NA	NA
AZX80198.1|3096456_3096714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80199.1|3096752_3096935_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX80200.1|3096964_3097915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81261.1|3098044_3098437_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX80201.1|3098713_3099625_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX80202.1|3099749_3100724_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX80203.1|3100720_3101671_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	3115178	3168696	4105351	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZX80214.1|3115178_3116129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80215.1|3116241_3116493_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80216.1|3116686_3116902_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80217.1|3116998_3118117_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX80218.1|3118236_3118449_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80219.1|3118608_3118830_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80220.1|3118882_3119833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80221.1|3121009_3122380_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX80222.1|3122412_3123204_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80223.1|3123216_3124272_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80224.1|3124297_3125173_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80225.1|3125278_3125527_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80226.1|3125561_3127016_-	carboxylase	NA	NA	NA	NA	NA
AZX80227.1|3127012_3127534_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX80228.1|3127562_3128915_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX80229.1|3129138_3132027_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX80230.1|3134171_3135473_+	phospholipase	NA	NA	NA	NA	NA
AZX80231.1|3135487_3136204_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX80232.1|3136485_3137166_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX80233.1|3137177_3137345_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80234.1|3137453_3137606_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80235.1|3137693_3138353_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX80236.1|3138733_3140584_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX80237.1|3140580_3141531_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80238.1|3142694_3144410_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX80239.1|3144420_3144912_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX80240.1|3144984_3146001_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX80241.1|3146168_3146948_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX80242.1|3146966_3147494_-	lipoprotein	NA	NA	NA	NA	NA
AZX80243.1|3147492_3147699_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80244.1|3147787_3148057_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX80245.1|3148147_3150307_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX80246.1|3150427_3151147_+	lipoprotein	NA	NA	NA	NA	NA
AZX80247.1|3151143_3152094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80248.1|3152234_3153452_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX80249.1|3153445_3154057_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX80250.1|3154690_3155668_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX80251.1|3155811_3156558_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX80252.1|3156579_3157026_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX80253.1|3157813_3160045_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX80254.1|3160067_3160868_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80255.1|3161149_3162382_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX80256.1|3162492_3163482_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX80257.1|3163512_3164901_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX80258.1|3166499_3167483_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81263.1|3167679_3168696_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	3233154	3306316	4105351	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZX80312.1|3233154_3234105_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80313.1|3234101_3235121_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX80314.1|3235130_3237839_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX80315.1|3237986_3238643_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX80316.1|3238741_3239692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80317.1|3239797_3240733_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX80318.1|3240932_3242627_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX80319.1|3242661_3243588_+	VOC family protein	NA	NA	NA	NA	NA
AZX81266.1|3243656_3244754_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80320.1|3244772_3245636_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX80321.1|3245647_3246430_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX80322.1|3246426_3247545_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX80323.1|3247541_3249074_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX80324.1|3249114_3250122_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX80325.1|3250266_3250989_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80326.1|3251004_3252027_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX80327.1|3252343_3253078_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80328.1|3253162_3254908_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX80329.1|3254904_3255657_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX80330.1|3255701_3256658_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX80331.1|3256746_3257313_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80332.1|3257320_3258181_-	aminotransferase	NA	NA	NA	NA	NA
AZX80333.1|3258210_3258954_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX80334.1|3258970_3259654_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX80335.1|3260491_3261406_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX80336.1|3261470_3262379_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80337.1|3262469_3263894_-	protein CyaE	NA	NA	NA	NA	NA
AZX80338.1|3263895_3265218_-	protein CyaD	NA	NA	NA	NA	NA
AZX80339.1|3265214_3267353_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX80340.1|3267430_3272551_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX81267.1|3272737_3272917_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80341.1|3272999_3273587_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX80342.1|3273602_3275084_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX80343.1|3275138_3276992_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80344.1|3277254_3278592_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX80345.1|3278626_3280624_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX80346.1|3280641_3282690_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX80347.1|3282820_3283687_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80348.1|3283955_3284921_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX80349.1|3285035_3286184_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX80350.1|3286608_3286920_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX80351.1|3286953_3287214_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX80352.1|3287363_3288497_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX80353.1|3288567_3289704_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX80354.1|3289869_3290664_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX80355.1|3290726_3291170_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX80356.1|3291285_3292236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80357.1|3292222_3292411_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80358.1|3292358_3292766_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX80359.1|3292838_3295034_+	DNA methylase	NA	NA	NA	NA	NA
AZX80360.1|3295255_3296206_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80361.1|3296165_3296690_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX80362.1|3296821_3297793_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81268.1|3297912_3300357_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX80363.1|3300372_3300963_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX80364.1|3301206_3302157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80365.1|3302314_3303580_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX80366.1|3303613_3304711_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX80367.1|3305365_3306316_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	3317603	3417716	4105351	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX80378.1|3317603_3318554_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80379.1|3319285_3319663_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX80380.1|3319647_3320349_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80381.1|3320492_3321185_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX80382.1|3321184_3322288_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX80383.1|3322397_3324770_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX80384.1|3324766_3326326_+	chaperone SurA	NA	NA	NA	NA	NA
AZX80385.1|3326350_3327148_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX80386.1|3327179_3328325_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX80387.1|3328429_3329872_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX81269.1|3329874_3330963_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80388.1|3333241_3334192_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80389.1|3334178_3334397_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80390.1|3335321_3335879_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX80391.1|3335854_3336205_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80392.1|3336373_3337168_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX80393.1|3337164_3338214_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX80394.1|3338213_3338903_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX80395.1|3338989_3339487_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX80396.1|3339518_3340835_-	protein TolB	NA	NA	NA	NA	NA
AZX80397.1|3340851_3341826_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX80398.1|3341862_3342321_-	protein TolR	NA	NA	NA	NA	NA
AZX80399.1|3342320_3343001_-	protein TolQ	NA	NA	NA	NA	NA
AZX80400.1|3343003_3343432_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX80401.1|3343484_3345215_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX80402.1|3345280_3345853_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX80403.1|3345833_3346520_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX80404.1|3346875_3347547_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX80405.1|3347553_3347754_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80406.1|3348096_3348378_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80407.1|3348374_3348908_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX80408.1|3348889_3349441_-	lysozyme	NA	NA	NA	NA	NA
AZX80409.1|3349419_3349662_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80410.1|3349666_3350479_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80411.1|3350478_3350742_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80412.1|3350960_3351377_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80413.1|3351381_3355338_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX80414.1|3355330_3355720_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX80415.1|3355716_3356250_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX80416.1|3356317_3356677_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80417.1|3356686_3359299_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX80418.1|3359324_3359615_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX80419.1|3359632_3359962_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX80420.1|3359971_3360490_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX80421.1|3360744_3361245_-	HNH endonuclease	NA	A5H1K2	Xanthomonas_virus	43.0	6.0e-28
AZX80422.1|3361252_3361675_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80423.1|3361671_3362070_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX80424.1|3362066_3362462_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX80425.1|3362461_3362662_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80426.1|3362663_3363146_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX80427.1|3363208_3363460_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80428.1|3363469_3364117_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX80429.1|3364134_3365085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80430.1|3365513_3366116_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX80431.1|3366238_3366481_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX81270.1|3366486_3367542_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX80432.1|3367570_3368989_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX80433.1|3368991_3370269_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX80434.1|3370255_3370705_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX80435.1|3371380_3372331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80436.1|3372348_3372570_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80437.1|3372584_3373283_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80438.1|3373275_3373596_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81271.1|3374075_3374687_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX80439.1|3374752_3374965_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80440.1|3375216_3376167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80441.1|3376265_3377339_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80442.1|3377506_3378301_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX80443.1|3378340_3378865_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX80444.1|3378857_3380600_-	sulfite reductase	NA	NA	NA	NA	NA
AZX80445.1|3380809_3381568_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX80446.1|3381570_3382278_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX80447.1|3382294_3383176_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX80448.1|3383186_3383945_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81272.1|3383913_3384669_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80449.1|3384738_3386157_+	amidase	NA	NA	NA	NA	NA
AZX80450.1|3386178_3386829_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX80451.1|3386962_3387298_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX80452.1|3387386_3388337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80453.1|3388413_3390234_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX80454.1|3390238_3391312_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX80455.1|3391434_3392403_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX80456.1|3392476_3393388_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX80457.1|3393406_3393979_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX80458.1|3394059_3394608_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX80459.1|3394607_3396197_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX80460.1|3396266_3396506_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX80461.1|3396546_3397578_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX80462.1|3397637_3398819_-	monooxygenase	NA	NA	NA	NA	NA
AZX80463.1|3398915_3399368_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80464.1|3399377_3400718_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX80465.1|3401034_3402072_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80466.1|3402453_3402813_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81273.1|3402896_3403838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80467.1|3403912_3404863_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80468.1|3405156_3406251_+	porin	NA	NA	NA	NA	NA
AZX80469.1|3406332_3407214_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX80470.1|3407235_3408075_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX80471.1|3408150_3409668_+	peptidase	NA	NA	NA	NA	NA
AZX80472.1|3409764_3410865_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX80473.1|3410881_3411304_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX80474.1|3411326_3411539_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX80475.1|3411585_3412506_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX81274.1|3412769_3413438_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX80476.1|3413440_3413770_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX80477.1|3413976_3415410_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX80478.1|3415421_3415805_-	thioredoxin	NA	NA	NA	NA	NA
AZX80479.1|3415866_3416667_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80480.1|3416765_3417716_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	3691194	3733267	4105351	transposase,tRNA	Streptococcus_phage(12.5%)	44	NA	NA
AZX80717.1|3691194_3692145_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80718.1|3693177_3693711_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80719.1|3693790_3695260_-	potassium transporter Trk	NA	NA	NA	NA	NA
AZX80720.1|3695308_3696688_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
AZX80721.1|3696684_3697374_-	two-component system response regulator	NA	NA	NA	NA	NA
AZX80722.1|3697384_3699694_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX80723.1|3699690_3700302_-	DUF4390 domain-containing protein	NA	NA	NA	NA	NA
AZX80724.1|3700320_3701655_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
AZX80725.1|3701762_3702392_+	LysE family translocator	NA	NA	NA	NA	NA
AZX81284.1|3702437_3703214_-	L-aspartate dehydrogenase	NA	NA	NA	NA	NA
AZX80726.1|3703347_3704196_+	VOC family protein	NA	NA	NA	NA	NA
AZX80727.1|3704164_3704344_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80728.1|3704330_3705281_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80729.1|3705380_3706331_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80730.1|3706327_3706963_-	transporter	NA	NA	NA	NA	NA
AZX80731.1|3707092_3707992_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZX80732.1|3708087_3708579_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZX80733.1|3708625_3709591_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX80734.1|3710724_3711966_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZX80735.1|3712079_3713096_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZX80736.1|3713130_3713607_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80737.1|3713749_3714658_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZX80738.1|3714771_3715884_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZX80739.1|3715984_3716518_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX80740.1|3716606_3717857_+	kynureninase	NA	NA	NA	NA	NA
AZX80741.1|3717958_3718471_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZX80742.1|3718376_3718583_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80743.1|3718569_3719520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80744.1|3719585_3720524_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZX80745.1|3720546_3721173_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZX80746.1|3721169_3721826_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZX80747.1|3721822_3722425_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80748.1|3722431_3723058_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZX80749.1|3723199_3723769_+	bacterioferritin	NA	NA	NA	NA	NA
AZX80750.1|3723839_3725159_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZX80751.1|3725265_3725457_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX80752.1|3725708_3726998_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX80753.1|3727152_3728148_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX80754.1|3728232_3728907_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80755.1|3728903_3729854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80756.1|3729840_3730023_-	hypothetical protein	NA	NA	NA	NA	NA
AZX80757.1|3730015_3731257_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZX80758.1|3731253_3732198_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZX80759.1|3732316_3733267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	3753436	3789159	4105351	integrase,transposase	Burkholderia_phage(11.11%)	35	3750023:3750040	3794663:3794680
3750023:3750040	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZX80777.1|3753436_3754387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80778.1|3754397_3755039_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80779.1|3755205_3755448_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80780.1|3755546_3756497_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80781.1|3756532_3757000_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZX80782.1|3757233_3757611_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80783.1|3757607_3757790_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80784.1|3757793_3758780_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZX80785.1|3758776_3759424_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZX80786.1|3759481_3760009_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80787.1|3760042_3761230_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZX80788.1|3761219_3761582_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZX80789.1|3761574_3761694_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80790.1|3761694_3761895_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX80791.1|3761891_3762881_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZX80792.1|3764367_3766338_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZX80793.1|3766579_3766978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX80794.1|3766986_3767910_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80795.1|3768367_3769318_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80796.1|3769548_3771240_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZX80797.1|3771288_3771561_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZX80798.1|3771557_3771929_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZX80799.1|3772024_3772159_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZX80800.1|3772564_3773974_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZX80801.1|3773970_3775086_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZX80802.1|3775180_3777634_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZX80803.1|3777752_3778544_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80804.1|3778663_3780091_+	amidase	NA	NA	NA	NA	NA
AZX81285.1|3780129_3781101_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX80805.1|3781519_3782683_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX80806.1|3782770_3783616_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX80807.1|3785172_3786123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX80808.1|3786677_3787052_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX80809.1|3787126_3788185_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX80810.1|3788208_3789159_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3794663:3794680	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
>prophage 29
CP025374	Bordetella pertussis strain H814 chromosome, complete genome	4105351	4004419	4069331	4105351	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX81007.1|4004419_4004905_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81008.1|4005123_4006104_+	protein BugT	NA	NA	NA	NA	NA
AZX81009.1|4006370_4007180_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX81010.1|4007219_4007900_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX81011.1|4007893_4008352_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX81012.1|4008363_4008726_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX81013.1|4008808_4009492_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX81014.1|4009547_4009856_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX81015.1|4009874_4010189_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX81016.1|4010185_4012660_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX81017.1|4012667_4014059_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX81018.1|4014055_4014241_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX81019.1|4014219_4014921_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX81020.1|4014917_4015739_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX81297.1|4015719_4016844_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX81021.1|4016836_4017856_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX81022.1|4018061_4019096_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX81298.1|4019196_4019988_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX81023.1|4020070_4020445_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX81024.1|4020422_4021832_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX81025.1|4021824_4023207_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX81026.1|4023541_4025146_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81027.1|4025181_4026195_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX81028.1|4026205_4027132_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX81029.1|4027522_4028473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81030.1|4028642_4029869_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX81031.1|4030068_4030935_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX81032.1|4030927_4031890_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX81033.1|4031990_4032941_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81034.1|4033039_4033990_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81035.1|4034088_4035039_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81036.1|4035035_4036529_-	RND transporter	NA	NA	NA	NA	NA
AZX81037.1|4036525_4039633_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX81038.1|4039629_4042698_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX81039.1|4042694_4043945_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX81040.1|4044125_4044887_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX81041.1|4044919_4045570_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX81042.1|4045572_4046412_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX81043.1|4046652_4047396_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81044.1|4047478_4047826_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81045.1|4047923_4048766_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX81046.1|4048810_4049698_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX81047.1|4049724_4049913_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX81048.1|4050010_4051468_+	MFS transporter	NA	NA	NA	NA	NA
AZX81049.1|4051454_4052981_+	glycerol kinase	NA	NA	NA	NA	NA
AZX81050.1|4052999_4053467_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81051.1|4053466_4054489_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81052.1|4054609_4055350_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX81053.1|4055404_4056505_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81054.1|4056506_4057697_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81055.1|4057816_4058833_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX81056.1|4059151_4059823_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX81057.1|4059819_4060728_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX81058.1|4060939_4061587_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX81059.1|4065438_4066515_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX81060.1|4066525_4067335_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX81061.1|4067424_4068198_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX81062.1|4068380_4069331_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
