The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	0	122073	4106744	protease,tRNA,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZX70503.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX70504.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX70505.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX70506.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX70507.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX70508.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX70509.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX70510.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX70511.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX70512.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX70513.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX70514.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX70515.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX70516.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX73911.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX70517.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70518.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX70519.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX70520.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70521.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX70522.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70523.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX70524.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX73912.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70525.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX70526.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX70527.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70528.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX70529.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX70530.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX70531.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX70532.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX70533.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX70534.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX70535.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX70536.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX70537.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70538.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70539.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX70540.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70541.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX70542.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX70543.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70544.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX70545.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX70546.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX70547.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX70548.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX70549.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70550.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70551.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX70552.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX70553.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70554.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70555.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX70556.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX70557.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX70558.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX70559.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70560.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70561.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX70562.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX70563.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX70564.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX70565.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73913.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70566.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX70567.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73914.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70568.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX70569.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX70570.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX70571.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX70572.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX70573.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX70574.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX70575.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX70576.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX70577.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX70578.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX70579.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX70580.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70581.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX70582.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX70583.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX70584.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX70585.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70586.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX70587.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX70588.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX70589.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX70590.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX70591.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX70592.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX70593.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX70594.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX70595.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70596.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX70597.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX70598.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX70599.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX73915.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX70600.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70601.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX70602.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX70603.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX70604.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70605.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX70606.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX70607.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	164895	225406	4106744	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX70639.1|164895_165846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70640.1|167289_168192_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70641.1|168169_168799_-	LemA family protein	NA	NA	NA	NA	NA
AZX70642.1|169129_170512_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX70643.1|170545_171175_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX70644.1|171223_172831_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX70645.1|172855_173539_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73920.1|173620_174097_-	bacterioferritin	NA	NA	NA	NA	NA
AZX70646.1|174303_175254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70647.1|176369_176897_+	lipoprotein	NA	NA	NA	NA	NA
AZX70648.1|176988_177804_+	lipoprotein	NA	NA	NA	NA	NA
AZX70649.1|177864_178599_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX70650.1|178636_180715_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX70651.1|180964_181237_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70652.1|181335_182424_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX70653.1|182427_184332_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX70654.1|184328_188003_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX70655.1|188063_188627_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX70656.1|188634_189057_-	glyoxalase	NA	NA	NA	NA	NA
AZX70657.1|189084_189504_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX73921.1|189532_189979_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX70658.1|190105_190603_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70659.1|190757_193028_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX70660.1|193076_194309_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX70661.1|194407_195358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70662.1|195403_196096_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX70663.1|196092_196986_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX70664.1|197380_198481_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX70665.1|198562_198937_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX70666.1|198996_201861_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX70667.1|202005_202746_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70668.1|202815_204027_+	CoA transferase	NA	NA	NA	NA	NA
AZX70669.1|204055_205024_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70670.1|205637_206588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70671.1|206744_207068_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX70672.1|207172_208222_-	cyclase	NA	NA	NA	NA	NA
AZX70673.1|208218_209043_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX70674.1|209043_209340_-	YciI family protein	NA	NA	NA	NA	NA
AZX70675.1|209365_209641_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX70676.1|209697_210342_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX70677.1|210341_211028_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX73922.1|211157_212009_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70678.1|212059_212785_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX70679.1|212816_214166_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX70680.1|214277_215210_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX70681.1|215667_218463_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX70682.1|219056_221999_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX70683.1|222070_222790_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX70684.1|222828_223377_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX70685.1|223531_224431_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX70686.1|224455_225406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	233338	286926	4106744	protease,tRNA,transposase	Bacillus_phage(25.0%)	48	NA	NA
AZX70694.1|233338_234289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70695.1|234375_235326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70696.1|235322_236273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70697.1|236371_237169_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX70698.1|238118_238529_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX70699.1|239550_240294_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70700.1|240337_241381_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70701.1|241551_243654_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70702.1|245064_246021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70703.1|246039_246531_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX70704.1|246527_247883_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX70705.1|247883_248582_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX70706.1|248578_249280_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX70707.1|249532_250582_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX70708.1|250687_251629_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX70709.1|251625_253515_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX70710.1|253601_254240_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73923.1|254382_255627_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX70711.1|255698_256235_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX70712.1|256386_257778_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX70713.1|257794_258775_-	AEC family transporter	NA	NA	NA	NA	NA
AZX70714.1|258910_259894_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX70715.1|259958_260858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70716.1|260964_262719_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX70717.1|262726_263851_-	CoA transferase	NA	NA	NA	NA	NA
AZX70718.1|263864_264845_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70719.1|265575_266526_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70720.1|267085_267631_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70721.1|267714_269334_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX70722.1|269349_270504_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX70723.1|270517_270643_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX70724.1|270639_272391_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX70725.1|272387_274067_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX70726.1|274102_274678_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX70727.1|275820_276099_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX70728.1|277142_278093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70729.1|278079_278295_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70730.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX70731.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70732.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX70733.1|279657_280269_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX70734.1|280427_281282_-	cytochrome c1	NA	NA	NA	NA	NA
AZX70735.1|281301_282684_-	cytochrome b	NA	NA	NA	NA	NA
AZX70736.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX70737.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX70738.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX73924.1|284842_285979_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX70739.1|285975_286926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	466029	585349	4106744	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
AZX70893.1|466029_468405_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX70894.1|468503_469454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70895.1|470176_471451_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX70896.1|471537_472620_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX70897.1|472630_473443_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX70898.1|473479_473806_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX70899.1|473810_474371_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX70900.1|474611_475604_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70901.1|475622_476618_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70902.1|476633_478010_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX70903.1|478002_480384_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX73939.1|480400_480790_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73940.1|480916_481147_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70904.1|481251_482202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70905.1|482300_483251_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX70906.1|483247_484120_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX70907.1|485050_486337_+	cytochrome c	NA	NA	NA	NA	NA
AZX70908.1|486390_487317_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX70909.1|487335_487800_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX70910.1|488642_489434_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX70911.1|489465_490086_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX70912.1|490082_490712_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX70913.1|490724_491333_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX70914.1|491329_492319_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX70915.1|492424_493639_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX70916.1|495590_496541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73941.1|497974_499261_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70917.1|499426_499735_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX70918.1|499735_500401_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX70919.1|500441_502232_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX70920.1|502344_503205_+	endonuclease	NA	NA	NA	NA	NA
AZX70921.1|503201_504407_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX70922.1|504403_505288_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX70923.1|506804_507239_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX70924.1|507201_508200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70925.1|508311_509457_+	transporter	NA	NA	NA	NA	NA
AZX70926.1|509531_510860_+	amidase	NA	NA	NA	NA	NA
AZX70927.1|510893_511484_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX70928.1|511773_512568_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70929.1|513737_514472_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX73942.1|514478_515306_-	copper resistance protein B	NA	NA	NA	NA	NA
AZX70930.1|515352_517128_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX70931.1|517170_517668_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70932.1|517964_518915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70933.1|519013_519964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70934.1|520304_521255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70935.1|523578_524727_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX70936.1|524771_525434_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70937.1|525547_526540_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX70938.1|526536_527274_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX70939.1|527353_528175_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX70940.1|528263_529127_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX70941.1|529253_529490_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70942.1|531464_532499_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX70943.1|532557_533535_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX70944.1|533542_534463_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX70945.1|534459_536160_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX70946.1|536162_537068_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX70947.1|537111_538245_+	peptidase	NA	NA	NA	NA	NA
AZX70948.1|538373_539324_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70949.1|539422_541492_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZX70950.1|541534_543637_-	primosomal protein N'	NA	NA	NA	NA	NA
AZX70951.1|543943_545020_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZX73943.1|545095_545980_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70952.1|546162_546585_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZX70953.1|546594_547995_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZX70954.1|548037_548943_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZX70955.1|549041_550583_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZX70956.1|550617_551157_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZX70957.1|551169_551640_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZX70958.1|551777_552020_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZX70959.1|552136_553018_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZX73944.1|553090_553411_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX70960.1|554262_555213_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70961.1|556536_557313_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX70962.1|557347_559120_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX70963.1|559121_560024_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX70964.1|560148_560508_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX70965.1|560539_561502_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX70966.1|561600_562551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70967.1|562563_563499_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX70968.1|563558_564398_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX70969.1|564394_565564_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX70970.1|565560_566850_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70971.1|566892_567267_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX70972.1|567372_568110_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX70973.1|568117_568822_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX70974.1|569085_570606_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX70975.1|570661_571225_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX70976.1|571243_572275_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX70977.1|572271_573060_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX70978.1|573235_574225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70979.1|575981_576932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70980.1|578154_579057_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70981.1|579058_579913_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX70982.1|579959_581069_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX70983.1|581079_581598_-	flavin reductase	NA	NA	NA	NA	NA
AZX70984.1|581627_582260_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX70985.1|582331_582991_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX70986.1|582987_584208_-	MFS transporter	NA	NA	NA	NA	NA
AZX70987.1|584476_585349_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	589763	654645	4106744	tRNA,transposase	Pandoravirus(12.5%)	51	NA	NA
AZX70991.1|589763_590780_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX70992.1|591051_591678_-	aminotransferase	NA	NA	NA	NA	NA
AZX70993.1|591733_592861_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX70994.1|592866_598584_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX70995.1|598867_599083_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70996.1|599151_600096_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX70997.1|600284_601220_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX70998.1|601337_602909_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70999.1|602988_604197_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX71000.1|604694_605612_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX71001.1|607972_608194_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71002.1|608524_609541_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX71003.1|609625_609877_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX71004.1|609880_610696_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX71005.1|610808_611687_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX71006.1|611798_613562_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX71007.1|613677_615018_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX71008.1|616087_617512_-	ATP-binding protein	NA	NA	NA	NA	NA
AZX71009.1|617511_618213_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX71010.1|619717_620668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71011.1|620736_621735_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71012.1|621739_622420_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX71013.1|622557_622950_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX71014.1|623057_624074_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX71015.1|624313_625099_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX71016.1|625193_626603_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX71017.1|626613_627414_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX71018.1|627434_628205_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX71019.1|628247_628715_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX71020.1|628711_629662_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71021.1|630578_630758_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71022.1|630744_631695_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71023.1|632659_633538_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX71024.1|634464_637443_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71025.1|637441_637810_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71026.1|637796_638747_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71027.1|638743_639832_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71028.1|639867_640731_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX71029.1|641870_642260_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX71030.1|642263_643046_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX71031.1|643079_643832_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX71032.1|644140_645280_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71033.1|645276_646068_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX71034.1|646064_646814_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX71035.1|646810_647683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX71036.1|647682_648684_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX71037.1|648680_649844_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX71038.1|649869_650553_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71039.1|650506_651841_+	CoA ligase	NA	NA	NA	NA	NA
AZX71040.1|651833_652928_+	CoA transferase	NA	NA	NA	NA	NA
AZX73946.1|653694_654645_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	673556	750865	4106744	protease,tRNA,integrase,transposase	Bacillus_phage(20.0%)	59	720693:720711	740581:740599
AZX71058.1|673556_674507_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71059.1|674605_676081_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX71060.1|677668_678556_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX71061.1|678558_679500_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX71062.1|679545_681111_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX73947.1|682888_684172_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZX71063.1|684396_685854_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZX71064.1|685817_686321_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZX71065.1|686345_687317_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZX71066.1|687369_687807_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX71067.1|687930_688599_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZX71068.1|689327_690431_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX71069.1|690536_691811_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX71070.1|691822_692848_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX71071.1|692849_694220_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71072.1|694220_695357_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX71073.1|695403_697329_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZX71074.1|697325_698447_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX71075.1|698443_699598_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX71076.1|699594_700725_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX71077.1|700732_702298_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX71078.1|702304_703687_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZX71079.1|703965_704577_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71080.1|704668_706084_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX71081.1|706101_706812_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX71082.1|706808_708131_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZX71083.1|708210_710172_+	sulfatase	NA	NA	NA	NA	NA
AZX71084.1|710297_711611_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZX71085.1|711719_713018_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZX71086.1|713200_714109_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71087.1|714118_714328_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZX71088.1|714339_716019_-	oxidoreductase	NA	NA	NA	NA	NA
AZX71089.1|716120_717074_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX71090.1|717164_717992_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZX71091.1|717990_719877_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX71092.1|719873_720473_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZX71093.1|720521_721421_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720693:720711	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX73948.1|721647_722580_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZX71094.1|722702_723317_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZX71095.1|723394_724042_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX71096.1|724038_724821_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX71097.1|724893_725985_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX71098.1|726264_727392_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX71099.1|727733_728780_+	Fic family protein	NA	NA	NA	NA	NA
AZX73949.1|728790_728931_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX71100.1|728927_732047_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX71101.1|732048_735000_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX71102.1|735015_736227_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX71103.1|736223_736424_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71104.1|736410_737361_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71105.1|737377_737872_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX71106.1|737875_738133_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71107.1|738157_739588_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX71108.1|739657_739954_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AZX71109.1|740737_741688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
740581:740599	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX71110.1|742106_744671_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX71111.1|744715_746569_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71112.1|746901_748473_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX71113.1|749914_750865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	1005156	1099193	4106744	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZX71316.1|1005156_1006107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71317.1|1006209_1006872_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71318.1|1006974_1007385_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71319.1|1007489_1008491_+	amidase	NA	NA	NA	NA	NA
AZX71320.1|1008493_1009690_+	CoA transferase	NA	NA	NA	NA	NA
AZX71321.1|1009710_1010514_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX71322.1|1010594_1010891_+	histidine kinase	NA	NA	NA	NA	NA
AZX71323.1|1010921_1011485_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX73968.1|1011525_1012383_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX71324.1|1012390_1013140_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX71325.1|1013161_1014034_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71326.1|1014062_1014842_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX71327.1|1014875_1015673_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71328.1|1017124_1018297_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX71329.1|1018327_1018720_+	RidA family protein	NA	NA	NA	NA	NA
AZX71330.1|1018713_1019574_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX71331.1|1019577_1020540_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX73969.1|1021316_1022006_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX71332.1|1022866_1023817_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71333.1|1024166_1025036_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71334.1|1025106_1025802_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX71335.1|1025791_1026301_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX71336.1|1026297_1027518_+	MFS transporter	NA	NA	NA	NA	NA
AZX71337.1|1027465_1028368_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71338.1|1029254_1030541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71339.1|1030579_1031953_+	amidase	NA	NA	NA	NA	NA
AZX71340.1|1031991_1032693_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX71341.1|1032991_1033981_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71342.1|1034081_1034543_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX71343.1|1034558_1035107_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX71344.1|1035248_1036724_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX71345.1|1036829_1037921_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX71346.1|1037924_1038707_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX71347.1|1038716_1039505_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX71348.1|1040630_1041065_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX71349.1|1041061_1042072_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX71350.1|1042115_1043042_-	VOC family protein	NA	NA	NA	NA	NA
AZX71351.1|1043328_1043697_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX73970.1|1043913_1044864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73971.1|1044845_1047335_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX71352.1|1047383_1048076_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX71353.1|1048148_1049348_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX71354.1|1049365_1050271_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71355.1|1050386_1051316_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX73972.1|1051341_1052688_+	MFS transporter	NA	NA	NA	NA	NA
AZX73973.1|1052715_1053465_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX71356.1|1053478_1054261_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX71357.1|1054453_1055404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71358.1|1055465_1056611_-	porin	NA	NA	NA	NA	NA
AZX71359.1|1057087_1057924_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX71360.1|1057993_1058959_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71361.1|1058955_1059906_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71362.1|1059892_1060087_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71363.1|1060291_1060834_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71364.1|1061869_1062820_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71365.1|1063061_1063430_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71366.1|1063475_1064600_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73974.1|1065734_1066475_-	oxidoreductase	NA	NA	NA	NA	NA
AZX71367.1|1066578_1067199_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71368.1|1067302_1068253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71369.1|1068249_1070358_-	AsmA family protein	NA	NA	NA	NA	NA
AZX71370.1|1070502_1071162_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX71371.1|1071193_1071658_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX71372.1|1071933_1072119_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71373.1|1072170_1072923_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX71374.1|1072929_1074192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71375.1|1074233_1075472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71376.1|1076549_1077677_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX71377.1|1077687_1078515_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX71378.1|1078501_1079368_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX71379.1|1080734_1081139_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71380.1|1081230_1082181_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73975.1|1082550_1083462_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71381.1|1083476_1084187_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71382.1|1084183_1085428_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX71383.1|1085429_1085864_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX71384.1|1085892_1086198_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX71385.1|1086091_1086310_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71386.1|1086296_1087247_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71387.1|1087303_1088452_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX71388.1|1088532_1089483_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71389.1|1090014_1090812_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71390.1|1090859_1091513_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX71391.1|1091469_1092558_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX71392.1|1092722_1094948_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX71393.1|1097225_1098122_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX71394.1|1098010_1098256_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71395.1|1098242_1099193_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	1129579	1199500	4106744	protease,transposase	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
AZX71424.1|1129579_1130530_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71425.1|1130586_1131699_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX71426.1|1134082_1135033_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71427.1|1135623_1136400_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX71428.1|1136517_1136781_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX71429.1|1136881_1137886_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX71430.1|1138086_1139688_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX71431.1|1139713_1140472_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX71432.1|1140563_1141220_-	adenylate kinase	NA	NA	NA	NA	NA
AZX71433.1|1141310_1142075_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX71434.1|1142084_1142273_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71435.1|1142328_1143372_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX71436.1|1143368_1143782_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX71437.1|1143778_1144399_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX71438.1|1144679_1145630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71439.1|1145797_1147189_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX71440.1|1147261_1147840_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX71441.1|1147956_1149354_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX71442.1|1149469_1150675_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX71443.1|1150774_1151293_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX71444.1|1151387_1151633_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX71445.1|1151860_1152175_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX71446.1|1152264_1157454_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX73977.1|1157450_1159619_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX71447.1|1159638_1161990_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX71448.1|1161994_1163314_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX71449.1|1163332_1165006_+	MCE family protein	NA	NA	NA	NA	NA
AZX71450.1|1165010_1165679_+	lipoprotein	NA	NA	NA	NA	NA
AZX71451.1|1165835_1169657_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX71452.1|1169987_1170938_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71453.1|1170959_1172105_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71454.1|1172253_1173183_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX71455.1|1173179_1174268_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX71456.1|1174264_1175068_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX71457.1|1175064_1175796_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX71458.1|1175853_1177143_-	MFS transporter	NA	NA	NA	NA	NA
AZX71459.1|1177239_1177842_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71460.1|1182394_1182733_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX71461.1|1183401_1183707_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71462.1|1185413_1186364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71463.1|1186360_1187692_-	MFS transporter	NA	NA	NA	NA	NA
AZX71464.1|1188931_1190953_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX71465.1|1190945_1191587_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX71466.1|1191583_1191991_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX71467.1|1191987_1192788_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX71468.1|1192862_1193567_+	oxidoreductase	NA	NA	NA	NA	NA
AZX71469.1|1193598_1194393_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX71470.1|1194389_1195340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71471.1|1195438_1195873_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX71472.1|1195955_1198292_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX71473.1|1198483_1199500_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	1246894	1323756	4106744	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
AZX71512.1|1246894_1247845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71513.1|1247841_1248792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71514.1|1248778_1249129_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71515.1|1249052_1250081_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX71516.1|1250160_1251459_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX71517.1|1251455_1252037_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX71518.1|1252349_1256396_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX71519.1|1256636_1264298_+	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX71520.1|1264294_1265245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71521.1|1266384_1266858_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71522.1|1266997_1267618_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX71523.1|1267753_1268554_+	aldolase	NA	NA	NA	NA	NA
AZX71524.1|1268608_1269700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71525.1|1269721_1270165_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX71526.1|1270193_1270826_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX71527.1|1270936_1271353_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX71528.1|1271345_1272038_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
AZX71529.1|1272144_1272519_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71530.1|1272595_1273405_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71531.1|1273500_1274445_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AZX71532.1|1274483_1275455_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71533.1|1275545_1275983_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
AZX71534.1|1276041_1276923_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71535.1|1277926_1278787_+	amidohydrolase	NA	NA	NA	NA	NA
AZX71536.1|1278819_1280202_+	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AZX73982.1|1280198_1281218_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71537.1|1281590_1282085_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71538.1|1282092_1282833_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71539.1|1282913_1284518_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
AZX71540.1|1284557_1285367_-	HTH domain-containing protein	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
AZX71541.1|1285471_1287637_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
AZX71542.1|1288517_1289330_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX71543.1|1289342_1289651_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71544.1|1289768_1291499_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71545.1|1291500_1292646_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71546.1|1292775_1293444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71547.1|1293565_1294033_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX71548.1|1294168_1295551_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZX71549.1|1295547_1296672_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX71550.1|1296668_1299305_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX71551.1|1299720_1300671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71552.1|1304417_1305029_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX71553.1|1305251_1306712_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX71554.1|1306808_1308401_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX71555.1|1308387_1308666_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71556.1|1308724_1309012_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX71557.1|1309013_1310354_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX71558.1|1310449_1311139_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71559.1|1311151_1312582_+	MFS transporter	NA	NA	NA	NA	NA
AZX71560.1|1314306_1315128_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71561.1|1315138_1316710_+	amidohydrolase	NA	NA	NA	NA	NA
AZX71562.1|1316738_1317716_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71563.1|1317742_1318546_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX71564.1|1318542_1319337_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX71565.1|1319344_1320580_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX71566.1|1320572_1321007_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX71567.1|1321756_1322707_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71568.1|1322805_1323756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	1327867	1368535	4106744	tRNA,transposase	Salmonella_phage(33.33%)	44	NA	NA
AZX71572.1|1327867_1328818_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71573.1|1328858_1329929_+	FUSC family protein	NA	NA	NA	NA	NA
AZX71574.1|1329951_1330830_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX71575.1|1331001_1331973_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX71576.1|1332135_1332978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71577.1|1333139_1333820_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX71578.1|1333813_1334983_+	amine oxidase	NA	NA	NA	NA	NA
AZX71579.1|1334979_1336011_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX71580.1|1336054_1337296_+	MFS transporter	NA	NA	NA	NA	NA
AZX71581.1|1337330_1338863_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX71582.1|1338943_1339567_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX71583.1|1339597_1340209_+	LysE family translocator	NA	NA	NA	NA	NA
AZX71584.1|1340244_1340715_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX71585.1|1340889_1341138_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71586.1|1341145_1342150_+	peptidase M20	NA	NA	NA	NA	NA
AZX71587.1|1342186_1343701_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX71588.1|1343704_1344664_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX71589.1|1344692_1345496_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX71590.1|1345497_1347132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX71591.1|1347215_1348277_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX71592.1|1348475_1348745_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71593.1|1348748_1349273_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX71594.1|1349688_1350639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71595.1|1350635_1351706_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX71596.1|1351778_1352417_+	DedA family protein	NA	NA	NA	NA	NA
AZX71597.1|1352711_1352939_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX71598.1|1353061_1353775_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX71599.1|1354019_1354970_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71600.1|1355073_1355355_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71601.1|1355469_1356918_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX71602.1|1357028_1357979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71603.1|1357975_1358425_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX71604.1|1358444_1358633_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71605.1|1358619_1359570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71606.1|1359905_1360103_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX71607.1|1360118_1360478_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX71608.1|1360552_1361575_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX71609.1|1361587_1364005_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX71610.1|1364010_1364352_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX71611.1|1364410_1364821_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71612.1|1365320_1366412_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71613.1|1366595_1367192_+	lipoprotein	NA	NA	NA	NA	NA
AZX71614.1|1367291_1367474_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71615.1|1367584_1368535_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	1448212	1501392	4106744	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
AZX71684.1|1448212_1449163_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71685.1|1449329_1449683_+	cytochrome C	NA	NA	NA	NA	NA
AZX71686.1|1449695_1450058_+	cytochrome	NA	NA	NA	NA	NA
AZX71687.1|1450099_1450525_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX71688.1|1450727_1451984_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX71689.1|1452182_1453163_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71690.1|1453312_1454554_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71691.1|1454652_1455603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71692.1|1455611_1456307_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX71693.1|1459128_1459728_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX71694.1|1459738_1461904_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX71695.1|1461927_1463712_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX71696.1|1463711_1463801_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX71697.1|1464495_1464768_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX71698.1|1464767_1466834_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX71699.1|1466830_1467781_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71700.1|1467896_1468229_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX71701.1|1468225_1468912_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX71702.1|1468898_1469858_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX73990.1|1469899_1472260_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX71703.1|1472259_1472892_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX71704.1|1472954_1474334_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX71705.1|1474380_1475736_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX71706.1|1476014_1476263_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71707.1|1476450_1476768_-	virulence factor	NA	NA	NA	NA	NA
AZX71708.1|1477040_1477556_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX71709.1|1477649_1477811_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71710.1|1477826_1478582_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX71711.1|1478920_1479127_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71712.1|1479134_1479794_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX71713.1|1480088_1482293_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX71714.1|1482403_1483627_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX71715.1|1483749_1484724_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX71716.1|1484791_1485985_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX71717.1|1485999_1486800_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX71718.1|1486796_1488653_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX71719.1|1488649_1489255_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX71720.1|1489273_1490659_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX71721.1|1491384_1492611_+	transporter	NA	NA	NA	NA	NA
AZX71722.1|1492699_1493482_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX71723.1|1493580_1494531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71724.1|1494557_1495331_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX71725.1|1495342_1496584_+	MFS transporter	NA	NA	NA	NA	NA
AZX71726.1|1498365_1499316_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71727.1|1499347_1500445_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX71728.1|1500441_1501392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	1543241	1602104	4106744	protease,tRNA,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZX73991.1|1543241_1543730_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX71774.1|1543847_1544426_+|protease	protease	protease	NA	NA	NA	NA
AZX71775.1|1544498_1544900_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX71776.1|1544998_1545949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71777.1|1545955_1547068_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX71778.1|1547754_1548957_+	MFS transporter	NA	NA	NA	NA	NA
AZX71779.1|1549160_1551821_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71780.1|1551833_1555238_+	nuclease	NA	NA	NA	NA	NA
AZX71781.1|1555905_1558131_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX71782.1|1558177_1558504_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX71783.1|1558554_1559163_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX71784.1|1559261_1560212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71785.1|1560281_1561046_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX71786.1|1561042_1561642_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73992.1|1561745_1562591_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX71787.1|1562656_1563283_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX71788.1|1563279_1564230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71789.1|1564216_1564405_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71790.1|1564328_1565450_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX71791.1|1565430_1566432_-	aminopeptidase	NA	NA	NA	NA	NA
AZX71792.1|1566537_1568049_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX71793.1|1568045_1569350_-	peptidase	NA	NA	NA	NA	NA
AZX71794.1|1569461_1570022_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX71795.1|1570289_1570844_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX71796.1|1571299_1571515_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX73993.1|1571769_1574367_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX71797.1|1574363_1575551_+	cupin	NA	NA	NA	NA	NA
AZX71798.1|1576209_1576824_+	fimbrial protein	NA	NA	NA	NA	NA
AZX71799.1|1576912_1578040_-	lipoprotein	NA	NA	NA	NA	NA
AZX71800.1|1578051_1578957_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX71801.1|1579849_1580800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71802.1|1580981_1581734_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX71803.1|1581802_1582462_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX71804.1|1582458_1583187_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX71805.1|1583199_1585479_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX71806.1|1585503_1585707_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX71807.1|1585748_1586396_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX71808.1|1586516_1587434_-	cytochrome C	NA	NA	NA	NA	NA
AZX71809.1|1587430_1588144_-	cytochrome C	NA	NA	NA	NA	NA
AZX71810.1|1588381_1589152_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX71811.1|1589156_1589756_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX71812.1|1590000_1591491_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX71813.1|1591549_1591834_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX71814.1|1591830_1591959_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71815.1|1591971_1592127_-	hypothetical protein	NA	NA	NA	NA	NA
AZX71816.1|1592399_1593326_-	YicC family protein	NA	NA	NA	NA	NA
AZX71817.1|1593462_1594203_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX71818.1|1594369_1595746_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX71819.1|1595927_1596833_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX71820.1|1596867_1598607_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX71821.1|1598484_1600287_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX71822.1|1600404_1601055_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX71823.1|1601153_1602104_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	1647276	1702816	4106744	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX71854.1|1647276_1648227_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71855.1|1648285_1649059_+	oxidoreductase	NA	NA	NA	NA	NA
AZX71856.1|1649051_1650608_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX71857.1|1650604_1651555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71858.1|1652881_1653484_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71859.1|1653723_1654425_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX71860.1|1654418_1655201_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX71861.1|1655385_1656336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71862.1|1656434_1657172_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX71863.1|1657361_1658120_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX71864.1|1658166_1659156_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71865.1|1659333_1660302_-	transporter	NA	NA	NA	NA	NA
AZX71866.1|1661841_1662810_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX71867.1|1662818_1663760_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX71868.1|1664233_1665244_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73997.1|1665234_1666749_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX71869.1|1666745_1668092_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73998.1|1668094_1669129_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX71870.1|1669178_1670804_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX71871.1|1671356_1672307_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX71872.1|1672411_1673359_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73999.1|1673412_1675227_-	histidine kinase	NA	NA	NA	NA	NA
AZX71873.1|1675219_1675894_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX71874.1|1676023_1679047_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX71875.1|1679060_1679360_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX74000.1|1679674_1680298_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX71876.1|1680541_1681411_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX71877.1|1681388_1682333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74001.1|1682418_1683390_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX74002.1|1683457_1684231_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX71878.1|1684227_1685424_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX71879.1|1685454_1686405_-	hydrolase	NA	NA	NA	NA	NA
AZX71880.1|1686626_1687316_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX71881.1|1687380_1688136_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX71882.1|1688187_1689180_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71883.1|1689189_1690143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71884.1|1690258_1691221_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71885.1|1692622_1693051_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71886.1|1693047_1693998_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74003.1|1694291_1695014_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX71887.1|1695452_1696640_-	MFS transporter	NA	NA	NA	NA	NA
AZX71888.1|1696643_1697024_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71889.1|1698743_1699715_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX71890.1|1699728_1700442_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX71891.1|1700446_1701364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX71892.1|1701470_1701767_+	hypothetical protein	NA	NA	NA	NA	NA
AZX71893.1|1701865_1702816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2022985	2071000	4106744	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
AZX72141.1|2022985_2023936_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72142.1|2024034_2026635_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX72143.1|2026741_2027746_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72144.1|2027854_2029195_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX72145.1|2029235_2030264_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72146.1|2030459_2031005_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72147.1|2031001_2031562_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX72148.1|2031660_2032611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72149.1|2032648_2033236_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX72150.1|2033253_2033637_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX72151.1|2034996_2036289_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX72152.1|2036423_2037464_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX72153.1|2037561_2038578_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX72154.1|2038845_2039493_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX72155.1|2039618_2040377_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX74018.1|2040451_2041141_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX72156.1|2041158_2042043_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX72157.1|2042039_2042819_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX72158.1|2042845_2043523_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74019.1|2043811_2044564_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72159.1|2044682_2046083_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX72160.1|2046106_2046505_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX72161.1|2046680_2046881_+	copper chaperone	NA	NA	NA	NA	NA
AZX72162.1|2047019_2047748_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX72163.1|2047881_2049297_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX72164.1|2049300_2050164_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX72165.1|2050176_2050926_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX72166.1|2051108_2053124_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX74020.1|2053105_2053654_-	arylesterase	NA	NA	NA	NA	NA
AZX72167.1|2053730_2054450_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX72168.1|2054548_2055499_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72169.1|2055597_2056548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72170.1|2056696_2057035_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX72171.1|2057092_2057254_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX72172.1|2057285_2057486_-	CsbD family protein	NA	NA	NA	NA	NA
AZX72173.1|2057751_2060325_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX72174.1|2060395_2062969_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX72175.1|2065495_2065984_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX72176.1|2066075_2067227_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX72177.1|2067280_2068102_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX72178.1|2068140_2069370_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX72179.1|2069498_2069939_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX72180.1|2069883_2070063_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72181.1|2070049_2071000_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2074393	2135598	4106744	protease,tRNA,transposase	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX72186.1|2074393_2077255_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX72187.1|2077244_2078210_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX72188.1|2078269_2080264_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX72189.1|2080362_2081313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72190.1|2081309_2081684_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72191.1|2081945_2083154_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX72192.1|2083150_2085451_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX72193.1|2085503_2088116_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX72194.1|2088475_2090401_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX72195.1|2090397_2091294_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX72196.1|2091300_2092440_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX72197.1|2092439_2093261_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX72198.1|2094831_2095161_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX72199.1|2095543_2096800_+	autotransporter Phg	NA	NA	NA	NA	NA
AZX72200.1|2096874_2097156_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72201.1|2097197_2097518_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72202.1|2097824_2098028_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX72203.1|2098111_2098678_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX72204.1|2099023_2099224_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX72205.1|2099335_2099914_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX72206.1|2100092_2101403_+	trigger factor	NA	NA	NA	NA	NA
AZX72207.1|2101405_2102059_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX72208.1|2102163_2103468_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX72209.1|2103656_2106110_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX72210.1|2106233_2107184_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72211.1|2107411_2108635_+	CoA transferase	NA	NA	NA	NA	NA
AZX72212.1|2108700_2109672_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX72213.1|2109684_2110140_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX72214.1|2110153_2110957_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX72215.1|2110953_2111385_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72216.1|2111381_2112539_+	thiolase	NA	NA	NA	NA	NA
AZX72217.1|2112560_2113337_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX72218.1|2115501_2116218_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX72219.1|2116210_2116852_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX72220.1|2116886_2117618_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72221.1|2117635_2117848_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72222.1|2118418_2119369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72223.1|2120926_2121655_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX72224.1|2121705_2122908_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX72225.1|2122985_2125022_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZX72226.1|2125274_2125766_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX72227.1|2125981_2126494_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX72228.1|2126511_2127723_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX72229.1|2127760_2128171_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX72230.1|2128172_2128496_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX72231.1|2128498_2129011_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX72232.1|2129140_2131003_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX72233.1|2131012_2131354_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX72234.1|2131353_2131548_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX72235.1|2131672_2132566_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX72236.1|2132562_2133513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72237.1|2133637_2134447_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX72238.1|2134647_2135598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2163381	2204072	4106744	protease,tRNA,transposase	Klosneuvirus(25.0%)	36	NA	NA
AZX72258.1|2163381_2166006_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX72259.1|2165992_2166247_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX72260.1|2166313_2166895_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72261.1|2167198_2167459_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX72262.1|2167624_2168248_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX72263.1|2168247_2169021_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX72264.1|2169017_2170226_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX72265.1|2170251_2170725_-	RidA family protein	NA	NA	NA	NA	NA
AZX72266.1|2170798_2171749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72267.1|2171847_2172798_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72268.1|2172896_2174246_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX72269.1|2175011_2175767_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX72270.1|2175859_2178742_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX72271.1|2179064_2179490_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX72272.1|2179517_2180666_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX72273.1|2180662_2181169_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX72274.1|2181175_2182471_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX72275.1|2182511_2183816_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX72276.1|2183817_2184456_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72277.1|2184458_2185619_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX72278.1|2185645_2187001_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX72279.1|2187004_2188075_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX72280.1|2188213_2188450_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX72281.1|2188537_2189644_+	GTPase HflX	NA	NA	NA	NA	NA
AZX72282.1|2189609_2190914_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX72283.1|2190932_2191832_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX72284.1|2192015_2193173_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX72285.1|2193237_2194545_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX72286.1|2194658_2195198_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX72287.1|2195475_2195688_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX72288.1|2195707_2197738_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX74022.1|2198537_2200706_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX72289.1|2201115_2201415_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72290.1|2201699_2202113_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX72291.1|2202072_2203023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72292.1|2203121_2204072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2215276	2265721	4106744	transposase	Klosneuvirus(16.67%)	45	NA	NA
AZX72306.1|2215276_2216227_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72307.1|2216223_2217498_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX72308.1|2217595_2218795_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX72309.1|2218791_2219445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX72310.1|2219441_2220878_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX72311.1|2220865_2221225_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX72312.1|2222197_2223148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72313.1|2224193_2226059_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX74024.1|2226316_2227837_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX72314.1|2227924_2228575_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZX72315.1|2229523_2230819_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX72316.1|2230840_2231725_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74025.1|2231823_2232699_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX72317.1|2232688_2233045_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX72318.1|2233118_2234150_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX72319.1|2234279_2234459_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX72320.1|2234556_2235081_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX72321.1|2235091_2235928_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX72322.1|2236040_2236412_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX72323.1|2236408_2236960_+	ATPase	NA	NA	NA	NA	NA
AZX72324.1|2236975_2238667_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX72325.1|2238715_2239396_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72326.1|2239643_2240108_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72327.1|2240277_2241207_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX72328.1|2241219_2241867_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72329.1|2241940_2243758_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX72330.1|2243841_2244792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72331.1|2244890_2245841_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72332.1|2246493_2247444_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72333.1|2247462_2247810_-	GFA family protein	NA	NA	NA	NA	NA
AZX72334.1|2247838_2249278_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX72335.1|2249296_2249692_-	VOC family protein	NA	NA	NA	NA	NA
AZX72336.1|2249866_2250475_+	peptidase S16	NA	NA	NA	NA	NA
AZX72337.1|2250487_2251306_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX72338.1|2251257_2252232_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX72339.1|2252260_2253322_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72340.1|2253318_2255535_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX72341.1|2255548_2256007_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX72342.1|2256164_2256509_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72343.1|2256665_2257571_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX74026.1|2257657_2258671_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX72344.1|2260650_2261667_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX72345.1|2261809_2263162_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX72346.1|2263336_2263633_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72347.1|2264770_2265721_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2277217	2341585	4106744	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZX72361.1|2277217_2278168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72362.1|2278154_2278346_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72363.1|2278389_2279340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72364.1|2279438_2280404_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX72365.1|2280541_2281441_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72366.1|2284035_2285523_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72367.1|2285533_2286730_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX72368.1|2286802_2288122_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX72369.1|2288118_2288994_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX72370.1|2289024_2290194_-	CoA transferase	NA	NA	NA	NA	NA
AZX72371.1|2290190_2290505_-	ferredoxin	NA	NA	NA	NA	NA
AZX72372.1|2290526_2291249_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX72373.1|2291248_2292067_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX72374.1|2292071_2292599_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX72375.1|2292604_2293870_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX72376.1|2294219_2295359_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72377.1|2295436_2296309_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX72378.1|2297179_2298130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72379.1|2298089_2298725_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72380.1|2299084_2300407_-	isocitrate lyase	NA	NA	NA	NA	NA
AZX72381.1|2300635_2301547_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX72382.1|2302971_2303544_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX72383.1|2303583_2305413_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZX72384.1|2305375_2306434_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX72385.1|2306471_2306933_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZX72386.1|2307017_2307764_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX72387.1|2309254_2312485_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX72388.1|2312551_2313883_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX72389.1|2314135_2314510_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX72390.1|2314612_2315791_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72391.1|2315801_2316392_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX74028.1|2316502_2317309_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX72392.1|2317334_2318129_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX72393.1|2319129_2320104_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72394.1|2320262_2320775_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX72395.1|2320931_2321903_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX72396.1|2323647_2324454_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX74029.1|2324450_2325587_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX72397.1|2325702_2326467_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72398.1|2326580_2327351_-	spermidine synthase	NA	NA	NA	NA	NA
AZX72399.1|2327435_2328647_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX72400.1|2328695_2329070_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX72401.1|2329170_2330433_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX72402.1|2330429_2331287_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX72403.1|2331459_2332461_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72404.1|2332912_2333863_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72405.1|2335377_2336577_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX72406.1|2336945_2337182_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX72407.1|2337245_2337413_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX72408.1|2337526_2339422_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX72409.1|2339585_2340536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72410.1|2340634_2341585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2506046	2564290	4106744	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AZX72547.1|2506046_2506997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72548.1|2507476_2508133_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX72549.1|2508147_2509815_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX72550.1|2509817_2510447_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72551.1|2510658_2511753_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72552.1|2511897_2512710_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX72553.1|2512713_2514417_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX72554.1|2514467_2515598_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX72555.1|2515784_2516861_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX74035.1|2516942_2517593_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX72556.1|2517607_2519041_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX72557.1|2519294_2520113_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72558.1|2520109_2520814_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX72559.1|2521713_2522829_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72560.1|2522862_2523237_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72561.1|2523259_2524417_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX72562.1|2524429_2524663_-	lipoprotein	NA	NA	NA	NA	NA
AZX72563.1|2525297_2528267_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX72564.1|2528281_2528491_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX72565.1|2528642_2529272_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72566.1|2529268_2531386_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX72567.1|2531382_2532063_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX72568.1|2532059_2532620_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX72569.1|2532626_2533724_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX72570.1|2533861_2534470_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX72571.1|2534466_2535759_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX72572.1|2535772_2536315_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX72573.1|2536324_2537161_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX72574.1|2537194_2538256_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX72575.1|2538297_2539350_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX72576.1|2539365_2539668_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72577.1|2539809_2540760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72578.1|2540938_2542633_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX72579.1|2542629_2543715_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX72580.1|2543762_2544662_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72581.1|2544672_2545317_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX72582.1|2546338_2549581_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX72583.1|2549591_2550689_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX72584.1|2550951_2551935_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX72585.1|2552033_2552984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72586.1|2553082_2554033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72587.1|2554042_2554732_-	VIT family protein	NA	NA	NA	NA	NA
AZX72588.1|2554791_2555229_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX72589.1|2555274_2556168_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX72590.1|2556215_2557388_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX72591.1|2557384_2558539_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX72592.1|2558735_2559086_-	RnfH family protein	NA	NA	NA	NA	NA
AZX72593.1|2559075_2559510_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX72594.1|2559526_2560477_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72595.1|2560624_2561092_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX72596.1|2561072_2562230_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX72597.1|2562295_2563222_-	paraslipin	NA	NA	NA	NA	NA
AZX72598.1|2563339_2564290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2606570	2673070	4106744	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX72637.1|2606570_2607521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72638.1|2607890_2608463_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX72639.1|2608465_2609476_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX72640.1|2609468_2609969_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX72641.1|2609979_2610321_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX72642.1|2610332_2611124_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX72643.1|2611140_2611410_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX72644.1|2611432_2612221_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX72645.1|2612267_2613284_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX72646.1|2613500_2614943_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX72647.1|2615121_2616741_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX72648.1|2616861_2618682_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX72649.1|2618760_2620293_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX72650.1|2620326_2621973_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX72651.1|2622042_2623065_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX72652.1|2623082_2624216_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX72653.1|2624218_2624908_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX72654.1|2624907_2625693_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX72655.1|2625736_2626501_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX72656.1|2626539_2627961_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX72657.1|2628026_2628731_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX72658.1|2628778_2629198_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX72659.1|2629210_2629618_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX74039.1|2629801_2630512_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX72660.1|2630638_2630929_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX72661.1|2630946_2631429_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX72662.1|2635934_2637089_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX72663.1|2637394_2638411_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX72664.1|2638657_2639446_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72665.1|2639512_2640193_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX72666.1|2640189_2640960_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX72667.1|2641058_2642009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72668.1|2642064_2642982_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX72669.1|2642992_2644171_-	mandelate racemase	NA	NA	NA	NA	NA
AZX72670.1|2644190_2645186_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX72671.1|2646774_2647383_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX72672.1|2647370_2648411_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX72673.1|2648428_2649391_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX72674.1|2649387_2650581_-	CoA transferase	NA	NA	NA	NA	NA
AZX72675.1|2650577_2651375_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX72676.1|2651400_2652387_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX72677.1|2652405_2654445_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX74040.1|2654646_2655327_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72678.1|2655340_2656252_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX72679.1|2656248_2656827_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX72680.1|2656965_2657871_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72681.1|2657878_2661298_+	nuclease	NA	NA	NA	NA	NA
AZX72682.1|2661285_2663886_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX72683.1|2664841_2665474_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72684.1|2665867_2666626_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72685.1|2666622_2667825_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX72686.1|2668012_2668963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72687.1|2669870_2671016_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX74041.1|2671035_2671758_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX72688.1|2671874_2672054_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72689.1|2672119_2673070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2875483	2956760	4106744	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZX72852.1|2875483_2876434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72853.1|2876430_2877333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72854.1|2877420_2878179_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX72855.1|2878191_2879340_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX72856.1|2879380_2880808_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX72857.1|2881037_2882252_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX72858.1|2882297_2885168_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX72859.1|2887578_2888067_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX72860.1|2888192_2890889_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX72861.1|2891043_2893326_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX72862.1|2893490_2894123_+	fimbrial protein	NA	NA	NA	NA	NA
AZX72863.1|2894221_2895172_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX72864.1|2895218_2895773_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX72865.1|2895840_2896686_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX72866.1|2896755_2897724_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX72867.1|2897723_2899520_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72868.1|2901419_2905346_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX72869.1|2905636_2905813_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72870.1|2906081_2909312_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX72871.1|2909593_2910421_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX72872.1|2910454_2911150_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX72873.1|2911142_2912423_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX72874.1|2912432_2913410_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74056.1|2913391_2915092_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX72875.1|2915194_2916298_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX72876.1|2916328_2917084_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX72877.1|2917090_2918611_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX72878.1|2918653_2918956_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72879.1|2918952_2919585_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72880.1|2919663_2921529_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX72881.1|2921525_2922341_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX72882.1|2922348_2923464_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72883.1|2924368_2925247_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX72884.1|2925246_2926071_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX72885.1|2926238_2927189_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72886.1|2927371_2930251_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX72887.1|2930232_2931009_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX72888.1|2931101_2932565_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX72889.1|2932561_2932933_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX72890.1|2932950_2934264_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72891.1|2934300_2934759_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX72892.1|2934871_2935822_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72893.1|2935818_2936832_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX72894.1|2936971_2937958_+	homoserine kinase	NA	NA	NA	NA	NA
AZX72895.1|2938001_2938802_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72896.1|2939604_2940555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72897.1|2940706_2941309_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72898.1|2941327_2941960_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX72899.1|2942197_2944084_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX72900.1|2944102_2944945_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX72901.1|2944941_2946300_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX72902.1|2946520_2947315_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX72903.1|2947545_2949039_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX72904.1|2949274_2951356_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX72905.1|2951550_2952591_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX72906.1|2952725_2953742_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX72907.1|2953763_2954621_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX74057.1|2954665_2955442_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX72908.1|2955809_2956760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	2965828	3015815	4106744	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZX72916.1|2965828_2966242_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX72917.1|2966282_2966600_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX72918.1|2966684_2967401_-	hypothetical protein	NA	NA	NA	NA	NA
AZX74058.1|2967664_2969086_+	siroheme synthase	NA	NA	NA	NA	NA
AZX72919.1|2970390_2971341_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72920.1|2973281_2974298_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX74059.1|2974633_2975275_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX72921.1|2975365_2976802_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX72922.1|2976959_2978033_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX72923.1|2978029_2979166_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX72924.1|2979310_2979655_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX72925.1|2979721_2981602_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX72926.1|2981651_2982587_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX72927.1|2982919_2983936_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX72928.1|2984873_2986301_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX72929.1|2986297_2987320_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX72930.1|2987309_2987783_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX72931.1|2987908_2988811_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZX72932.1|2988807_2990451_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX74060.1|2990447_2991455_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX72933.1|2992285_2993302_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX72934.1|2993401_2994034_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX72935.1|2994042_2994432_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX72936.1|2994484_2995537_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX72937.1|2996400_2998107_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX72938.1|2998180_2998681_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX72939.1|2998695_3000753_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX72940.1|3000779_3001073_-	response regulator	NA	NA	NA	NA	NA
AZX72941.1|3001174_3002122_-	motility protein MotB	NA	NA	NA	NA	NA
AZX72942.1|3002134_3003010_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX72943.1|3003130_3003691_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX72944.1|3003725_3004049_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX72945.1|3004484_3005222_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX72946.1|3005520_3006471_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72947.1|3006714_3006978_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX72948.1|3007051_3007333_+	hypothetical protein	NA	NA	NA	NA	NA
AZX72949.1|3007349_3008210_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX72950.1|3008206_3008542_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72951.1|3008595_3009246_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX72952.1|3010926_3011871_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72953.1|3011916_3012234_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72954.1|3012236_3013175_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX72955.1|3013352_3013838_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX72956.1|3013856_3014405_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX72957.1|3014681_3015815_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	3027422	3099916	4106744	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZX72966.1|3027422_3028373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72967.1|3028415_3029591_+	flagellin FliC	NA	NA	NA	NA	NA
AZX72968.1|3029812_3031603_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX72969.1|3031615_3033277_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX72970.1|3033289_3035995_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX72971.1|3036287_3038042_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX72972.1|3038038_3038665_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX72973.1|3038661_3039513_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX72974.1|3039588_3041703_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX72975.1|3041853_3042504_+	SCO family protein	NA	NA	NA	NA	NA
AZX72976.1|3042649_3042901_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX72977.1|3042970_3044353_-	multidrug transporter	NA	NA	NA	NA	NA
AZX72978.1|3044349_3047529_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX74062.1|3048336_3049254_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX72979.1|3049305_3050037_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX72980.1|3050096_3050669_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX72981.1|3052177_3053194_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX72982.1|3053331_3054381_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX72983.1|3054485_3055436_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72984.1|3055531_3056257_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX72985.1|3056467_3056848_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX72986.1|3057153_3058026_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX72987.1|3058033_3058414_-	hypothetical protein	NA	NA	NA	NA	NA
AZX72988.1|3058567_3059842_-	radical SAM protein	NA	NA	NA	NA	NA
AZX74063.1|3061329_3062238_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX72989.1|3063035_3064100_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX72990.1|3065936_3066971_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX72991.1|3067160_3067802_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX72992.1|3067884_3069711_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX72993.1|3069954_3070884_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX72994.1|3070883_3071633_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX72995.1|3071704_3072619_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX72996.1|3072638_3073784_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX72997.1|3073844_3074756_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX72998.1|3074836_3075787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX72999.1|3075885_3076470_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX73000.1|3076504_3077494_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX73001.1|3077490_3078432_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX73002.1|3078428_3079649_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX73003.1|3079691_3080006_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX73004.1|3080197_3080557_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX73005.1|3080558_3082289_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX73006.1|3082461_3083133_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX73007.1|3083147_3084476_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX73008.1|3084472_3085372_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX73009.1|3085458_3086544_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX73010.1|3086536_3087670_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX73011.1|3087669_3090351_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX73012.1|3090721_3091303_+	OmpA family protein	NA	NA	NA	NA	NA
AZX73013.1|3091380_3092154_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX73014.1|3092150_3092828_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX73015.1|3093043_3094225_+	MFS transporter	NA	NA	NA	NA	NA
AZX73016.1|3094701_3094959_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73017.1|3094997_3095180_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX73018.1|3095209_3096160_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74064.1|3096289_3096682_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX73019.1|3096958_3097870_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX73020.1|3097994_3098969_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX73021.1|3098965_3099916_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	3113423	3166941	4106744	holin,transposase	Bacillus_phage(33.33%)	46	NA	NA
AZX73032.1|3113423_3114374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73033.1|3114486_3114738_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73034.1|3114931_3115147_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73035.1|3115243_3116362_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX73036.1|3116481_3116694_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73037.1|3116853_3117075_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73038.1|3117127_3118078_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73039.1|3119254_3120625_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX73040.1|3120657_3121449_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX73041.1|3121461_3122517_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73042.1|3122542_3123418_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73043.1|3123523_3123772_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73044.1|3123806_3125261_-	carboxylase	NA	NA	NA	NA	NA
AZX73045.1|3125257_3125779_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX73046.1|3125807_3127160_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX73047.1|3127383_3130272_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX73048.1|3132416_3133718_+	phospholipase	NA	NA	NA	NA	NA
AZX73049.1|3133732_3134449_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX73050.1|3134730_3135411_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX73051.1|3135422_3135590_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73052.1|3135698_3135851_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73053.1|3135938_3136598_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX73054.1|3136978_3138829_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX73055.1|3138825_3139776_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73056.1|3140939_3142655_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX73057.1|3142665_3143157_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX73058.1|3143229_3144246_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX73059.1|3144413_3145193_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX73060.1|3145211_3145739_-	lipoprotein	NA	NA	NA	NA	NA
AZX73061.1|3145737_3145944_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73062.1|3146032_3146302_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX73063.1|3146392_3148552_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX73064.1|3148672_3149392_+	lipoprotein	NA	NA	NA	NA	NA
AZX73065.1|3149388_3150339_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73066.1|3150479_3151697_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX73067.1|3151690_3152302_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX73068.1|3152935_3153913_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX73069.1|3154056_3154803_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX73070.1|3154824_3155271_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX73071.1|3156058_3158290_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX73072.1|3158312_3159113_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX73073.1|3159394_3160627_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX73074.1|3160737_3161727_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX73075.1|3161757_3163146_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX73076.1|3164744_3165728_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX73077.1|3165924_3166941_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	3231399	3301451	4106744	transposase	Klosneuvirus(16.67%)	56	NA	NA
AZX73131.1|3231399_3232350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73132.1|3232346_3233366_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX73133.1|3233375_3236084_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX73134.1|3236231_3236888_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX73135.1|3236986_3237937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73136.1|3238042_3238978_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX73137.1|3239177_3240872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX73138.1|3240906_3241833_+	VOC family protein	NA	NA	NA	NA	NA
AZX74068.1|3241901_3242999_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73139.1|3243017_3243881_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX73140.1|3243892_3244675_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX73141.1|3244671_3245790_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX73142.1|3245786_3247319_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX73143.1|3247359_3248367_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX73144.1|3248511_3249234_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX73145.1|3249249_3250272_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX73146.1|3250588_3251323_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX73147.1|3251407_3253153_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX73148.1|3253149_3253902_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX73149.1|3253946_3254903_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX73150.1|3254991_3255558_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73151.1|3255565_3256426_-	aminotransferase	NA	NA	NA	NA	NA
AZX73152.1|3256455_3257199_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX73153.1|3257215_3257899_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX73154.1|3258736_3259651_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX73155.1|3259715_3260624_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX73156.1|3260714_3262139_-	protein CyaE	NA	NA	NA	NA	NA
AZX73157.1|3262140_3263463_-	protein CyaD	NA	NA	NA	NA	NA
AZX73158.1|3263459_3265598_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX73159.1|3265675_3270796_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX74069.1|3270982_3271162_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73160.1|3271244_3271832_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX73161.1|3271847_3273329_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX73162.1|3273383_3275237_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73163.1|3275499_3276837_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX73164.1|3276871_3278869_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX73165.1|3278886_3280935_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX73166.1|3281065_3281932_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX73167.1|3282200_3283166_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX73168.1|3283280_3284429_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX73169.1|3284853_3285165_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX73170.1|3285198_3285459_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX73171.1|3285608_3286742_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX73172.1|3286812_3287949_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX73173.1|3288114_3288909_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX73174.1|3288971_3289415_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX73175.1|3289530_3290481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73176.1|3290579_3291530_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX74070.1|3291652_3292060_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX73177.1|3292132_3294328_+	DNA methylase	NA	NA	NA	NA	NA
AZX73178.1|3294549_3295500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73179.1|3295459_3295984_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX73180.1|3296115_3297087_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74071.1|3297206_3299651_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX73181.1|3299666_3300257_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX73182.1|3300500_3301451_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	3316897	3417010	4106744	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX73196.1|3316897_3317848_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73197.1|3318579_3318957_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX73198.1|3318941_3319643_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73199.1|3319786_3320479_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX73200.1|3320478_3321582_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX73201.1|3321691_3324064_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX73202.1|3324060_3325620_+	chaperone SurA	NA	NA	NA	NA	NA
AZX73203.1|3325644_3326442_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX73204.1|3326473_3327619_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX73205.1|3327723_3329166_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX74072.1|3329168_3330257_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73206.1|3332535_3333486_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73207.1|3333472_3333691_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73208.1|3334615_3335173_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX73209.1|3335148_3335499_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73210.1|3335667_3336462_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX73211.1|3336458_3337508_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX73212.1|3337507_3338197_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX73213.1|3338283_3338781_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX73214.1|3338812_3340129_-	protein TolB	NA	NA	NA	NA	NA
AZX73215.1|3340145_3341120_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX73216.1|3341156_3341615_-	protein TolR	NA	NA	NA	NA	NA
AZX73217.1|3341614_3342295_-	protein TolQ	NA	NA	NA	NA	NA
AZX73218.1|3342297_3342726_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX73219.1|3342778_3344509_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX73220.1|3344574_3345147_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX73221.1|3345127_3345814_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX73222.1|3346169_3346841_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX73223.1|3346847_3347048_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73224.1|3347390_3347672_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73225.1|3347668_3348202_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX73226.1|3348183_3348735_-	lysozyme	NA	NA	NA	NA	NA
AZX73227.1|3348713_3348956_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73228.1|3348960_3349773_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73229.1|3349772_3350036_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73230.1|3350254_3350671_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73231.1|3350675_3354632_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX73232.1|3354624_3355014_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX73233.1|3355010_3355544_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX73234.1|3355611_3355971_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73235.1|3355980_3358593_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX73236.1|3358618_3358909_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX73237.1|3358926_3359256_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX73238.1|3359265_3359784_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX73239.1|3360038_3360539_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX73240.1|3360546_3360969_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73241.1|3360965_3361364_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX73242.1|3361360_3361756_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX73243.1|3361755_3361956_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73244.1|3361957_3362440_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX73245.1|3362502_3362754_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73246.1|3362763_3363411_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX73247.1|3363428_3364379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73248.1|3364807_3365410_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX73249.1|3365532_3365775_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX74073.1|3365780_3366836_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX73250.1|3366864_3368283_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX73251.1|3368285_3369563_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX73252.1|3369549_3369999_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX73253.1|3370674_3371625_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73254.1|3371642_3371864_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73255.1|3371878_3372577_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73256.1|3372569_3372890_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74074.1|3373369_3373981_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX73257.1|3374046_3374259_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73258.1|3374510_3375461_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73259.1|3375559_3376633_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73260.1|3376800_3377595_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX73261.1|3377634_3378159_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX73262.1|3378151_3379894_-	sulfite reductase	NA	NA	NA	NA	NA
AZX73263.1|3380103_3380862_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX73264.1|3380864_3381572_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX73265.1|3381588_3382470_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX73266.1|3382480_3383239_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX74075.1|3383207_3383963_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73267.1|3384032_3385451_+	amidase	NA	NA	NA	NA	NA
AZX73268.1|3385472_3386123_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX73269.1|3386256_3386592_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX73270.1|3386680_3387631_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73271.1|3387707_3389528_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX73272.1|3389532_3390606_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX73273.1|3390728_3391697_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX73274.1|3391770_3392682_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX73275.1|3392700_3393273_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX73276.1|3393353_3393902_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX73277.1|3393901_3395491_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX73278.1|3395560_3395800_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX73279.1|3395840_3396872_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX73280.1|3396931_3398113_-	monooxygenase	NA	NA	NA	NA	NA
AZX73281.1|3398209_3398662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73282.1|3398671_3400012_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX73283.1|3400328_3401366_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73284.1|3401747_3402107_+	hypothetical protein	NA	NA	NA	NA	NA
AZX74076.1|3402190_3403132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73285.1|3403206_3404157_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73286.1|3404450_3405545_+	porin	NA	NA	NA	NA	NA
AZX73287.1|3405626_3406508_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX73288.1|3406529_3407369_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX73289.1|3407444_3408962_+	peptidase	NA	NA	NA	NA	NA
AZX73290.1|3409058_3410159_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX73291.1|3410175_3410598_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX73292.1|3410620_3410833_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX73293.1|3410879_3411800_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX74077.1|3412063_3412732_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX73294.1|3412734_3413064_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX73295.1|3413270_3414704_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX73296.1|3414715_3415099_-	thioredoxin	NA	NA	NA	NA	NA
AZX73297.1|3415160_3415961_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73298.1|3416059_3417010_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025372	Bordetella pertussis strain I372 chromosome, complete genome	4106744	4005814	4070726	4106744	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX73827.1|4005814_4006300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73828.1|4006518_4007499_+	protein BugT	NA	NA	NA	NA	NA
AZX73829.1|4007765_4008575_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX73830.1|4008614_4009295_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX73831.1|4009288_4009747_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX73832.1|4009758_4010121_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX73833.1|4010203_4010887_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX73834.1|4010942_4011251_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX73835.1|4011269_4011584_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX73836.1|4011580_4014055_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX73837.1|4014062_4015454_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX73838.1|4015450_4015636_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX73839.1|4015614_4016316_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX73840.1|4016312_4017134_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX74099.1|4017114_4018239_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX73841.1|4018231_4019251_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX73842.1|4019456_4020491_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX74100.1|4020591_4021383_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX73843.1|4021465_4021840_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX73844.1|4021817_4023227_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX73845.1|4023219_4024602_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX73846.1|4024936_4026541_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX73847.1|4026576_4027590_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX73848.1|4027600_4028527_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX73849.1|4028917_4029868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73850.1|4030037_4031264_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX73851.1|4031463_4032330_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX73852.1|4032322_4033285_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX73853.1|4033385_4034336_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73854.1|4034434_4035385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73855.1|4035483_4036434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX73856.1|4036430_4037924_-	RND transporter	NA	NA	NA	NA	NA
AZX73857.1|4037920_4041028_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX73858.1|4041024_4044093_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX73859.1|4044089_4045340_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX73860.1|4045520_4046282_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX73861.1|4046314_4046965_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX73862.1|4046967_4047807_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX73863.1|4048047_4048791_+	hypothetical protein	NA	NA	NA	NA	NA
AZX73864.1|4048873_4049221_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX73865.1|4049318_4050161_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX73866.1|4050205_4051093_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX73867.1|4051119_4051308_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX73868.1|4051405_4052863_+	MFS transporter	NA	NA	NA	NA	NA
AZX73869.1|4052849_4054376_+	glycerol kinase	NA	NA	NA	NA	NA
AZX73870.1|4054394_4054862_-	hypothetical protein	NA	NA	NA	NA	NA
AZX73871.1|4054861_4055884_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX73872.1|4056004_4056745_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX73873.1|4056799_4057900_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX73874.1|4057901_4059092_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX73875.1|4059211_4060228_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX73876.1|4060546_4061218_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX73877.1|4061214_4062123_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX73878.1|4062334_4062982_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX73879.1|4066833_4067910_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX73880.1|4067920_4068730_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX73881.1|4068819_4069593_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX73882.1|4069775_4070726_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
