The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	0	63965	4088701	tRNA,transposase	Natrialba_phage(11.11%)	55	NA	NA
AZX66919.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX66920.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX66921.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX66922.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX66923.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX66924.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX66925.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX66926.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX66927.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX66928.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX66929.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX66930.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX66931.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX66932.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX70299.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX66933.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66934.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX66935.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX66936.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66937.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX66938.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66939.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX66940.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX70300.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66941.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX66942.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX66943.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66944.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX66945.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX66946.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX66947.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX66948.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX66949.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX66950.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX66951.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX66952.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX66953.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66954.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66955.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX66956.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66957.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX66958.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX66959.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66960.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX66961.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX66962.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX66963.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX66964.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX66965.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX66966.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66967.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66968.1|59597_60560_-	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX66969.1|60552_61419_-	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX66970.1|61618_62845_-	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX66971.1|63014_63965_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	248776	323120	4088701	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
AZX67155.1|248776_249727_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67156.1|249723_250914_-	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AZX67157.1|251035_251800_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AZX67158.1|251886_252990_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZX67159.1|253181_254198_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX67160.1|254479_254968_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZX67161.1|256311_256992_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZX67162.1|257053_257905_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZX67163.1|257901_258777_-	thiazole synthase	NA	NA	NA	NA	NA
AZX67164.1|258802_259696_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AZX67165.1|259707_261597_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZX67166.1|261933_265707_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZX67167.1|265703_266654_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67168.1|266962_267655_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZX67169.1|268028_268529_-	SET domain-containing protein	NA	NA	NA	NA	NA
AZX67170.1|268635_269556_+	bestrophin	NA	NA	NA	NA	NA
AZX67171.1|269572_270049_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX67172.1|270142_271993_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZX67173.1|272048_272807_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX70310.1|272834_274307_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX67174.1|274341_275121_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZX67175.1|275133_275967_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX67176.1|275975_276749_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZX67177.1|276745_277810_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX67178.1|277961_280589_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZX67179.1|280652_283274_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67180.1|284201_284660_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67181.1|284938_287182_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX67182.1|287378_289403_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZX67183.1|289526_290489_-	immunogenic protein	NA	NA	NA	NA	NA
AZX67184.1|290700_291840_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX67185.1|291862_292828_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67186.1|293023_294214_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZX67187.1|294227_294473_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZX67188.1|294501_296523_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZX70311.1|296569_298177_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AZX67189.1|298277_299447_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX67190.1|302328_303279_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67191.1|303302_304361_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX67192.1|304435_304810_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67193.1|305364_306315_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67194.1|307871_308717_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX67195.1|308804_309968_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX70312.1|310386_311358_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67196.1|311396_312824_-	amidase	NA	NA	NA	NA	NA
AZX67197.1|312943_313735_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67198.1|313853_316307_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZX67199.1|316401_317517_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZX67200.1|317513_318923_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZX67201.1|319328_319463_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZX67202.1|319558_319930_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZX67203.1|319926_320199_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZX67204.1|320247_321939_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZX67205.1|322169_323120_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	656734	757198	4088701	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX67508.1|656734_657685_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67509.1|658383_658767_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67510.1|658824_659427_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX70321.1|659444_659846_-	DoxX family protein	NA	NA	NA	NA	NA
AZX70322.1|659979_660873_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67511.1|660869_661451_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX67512.1|662245_662980_+	arginyltransferase	NA	NA	NA	NA	NA
AZX67513.1|663020_664070_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX67514.1|664217_664796_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX67515.1|665182_666160_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX67516.1|666253_670648_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX67517.1|670848_671697_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67518.1|671855_672668_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX67519.1|672723_673674_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67520.1|673772_674573_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67521.1|674634_675018_+	thioredoxin	NA	NA	NA	NA	NA
AZX67522.1|675029_676463_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX67523.1|676669_676999_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX70323.1|677001_677670_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX67524.1|677933_678854_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX67525.1|678900_679113_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX67526.1|679135_679558_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX67527.1|679574_680675_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX67528.1|680771_682289_-	peptidase	NA	NA	NA	NA	NA
AZX67529.1|682364_683204_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX67530.1|683225_684107_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX67531.1|684188_685283_-	porin	NA	NA	NA	NA	NA
AZX67532.1|685576_686527_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70324.1|686601_687543_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67533.1|687626_687986_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67534.1|688367_689405_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67535.1|689721_691062_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX67536.1|691071_691524_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67537.1|691620_692802_+	monooxygenase	NA	NA	NA	NA	NA
AZX67538.1|692861_693893_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX67539.1|693933_694173_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX67540.1|694242_695832_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX67541.1|695831_696380_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX67542.1|696460_697033_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX67543.1|697051_697963_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX67544.1|698036_699005_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX67545.1|699127_700201_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX67546.1|700205_702026_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX67547.1|702102_703053_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67548.1|703141_703477_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX67549.1|703610_704261_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX67550.1|704282_705701_-	amidase	NA	NA	NA	NA	NA
AZX67551.1|705770_706526_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70325.1|706494_707253_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX67552.1|707263_708145_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX67553.1|708161_708869_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX67554.1|708871_709630_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX67555.1|709839_711582_+	sulfite reductase	NA	NA	NA	NA	NA
AZX67556.1|711574_712099_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX67557.1|712138_712933_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX67558.1|713100_714174_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67559.1|714272_715223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67560.1|715474_715687_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70326.1|715752_716364_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX67561.1|716843_717164_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67562.1|717156_717855_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67563.1|717869_718091_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67564.1|718108_719059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70327.1|719734_720184_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX67565.1|720170_721448_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX67566.1|721450_722869_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX70328.1|722897_723953_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX67567.1|723958_724201_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX67568.1|724323_724926_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX67569.1|725354_726305_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67570.1|726322_726970_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX67571.1|726979_727231_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67572.1|727293_727776_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX67573.1|727777_727978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67574.1|727977_728373_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX67575.1|728369_728768_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX67576.1|728764_729187_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67577.1|729194_729695_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX67578.1|729949_730468_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX67579.1|730477_730807_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX67580.1|730824_731115_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX67581.1|731140_733753_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX67582.1|733762_734122_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67583.1|734189_734723_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX67584.1|734719_735109_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX67585.1|735101_739058_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX67586.1|739062_739479_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67587.1|739697_739961_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX67588.1|739960_740773_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67589.1|740777_741020_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67590.1|740998_741550_+	lysozyme	NA	NA	NA	NA	NA
AZX67591.1|741531_742065_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX67592.1|742061_742343_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67593.1|742685_742886_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67594.1|742892_743564_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX67595.1|743919_744606_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX67596.1|744586_745159_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX67597.1|745224_746955_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX67598.1|747007_747436_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX67599.1|747438_748119_+	protein TolQ	NA	NA	NA	NA	NA
AZX67600.1|748118_748577_+	protein TolR	NA	NA	NA	NA	NA
AZX67601.1|748613_749588_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX67602.1|749604_750921_+	protein TolB	NA	NA	NA	NA	NA
AZX67603.1|750952_751450_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX67604.1|751536_752226_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX67605.1|752225_753275_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX67606.1|753271_754066_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX67607.1|754234_754585_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67608.1|754560_755118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67609.1|756042_756261_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67610.1|756247_757198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	784123	857285	4088701	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZX67631.1|784123_785074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67632.1|785728_786826_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX67633.1|786859_788125_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX67634.1|788282_789233_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67635.1|789476_790067_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX70330.1|790082_792527_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX67636.1|792646_793618_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67637.1|793749_794274_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX67638.1|794233_795184_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67639.1|795405_797601_-	DNA methylase	NA	NA	NA	NA	NA
AZX67640.1|797673_798081_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX67641.1|798203_799154_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67642.1|799269_799713_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX67643.1|799775_800570_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX67644.1|800735_801872_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX67645.1|801942_803076_-	GTPase ObgE	NA	NA	NA	NA	NA
AZX67646.1|803225_803486_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX67647.1|803519_803831_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX67648.1|804255_805404_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX67649.1|805518_806484_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX67650.1|806752_807619_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67651.1|807749_809798_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX67652.1|809815_811813_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX67653.1|811847_813185_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX67654.1|813447_815301_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67655.1|815355_816837_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX67656.1|816852_817440_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX70331.1|817522_817702_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67657.1|817888_823009_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX67658.1|823086_825225_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX67659.1|825221_826544_+	protein CyaD	NA	NA	NA	NA	NA
AZX67660.1|826545_827970_+	protein CyaE	NA	NA	NA	NA	NA
AZX67661.1|828060_828969_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67662.1|829033_829948_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX67663.1|830785_831469_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX67664.1|831485_832229_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX67665.1|832258_833119_+	aminotransferase	NA	NA	NA	NA	NA
AZX67666.1|833126_833693_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67667.1|833781_834738_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67668.1|834782_835535_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX67669.1|835531_837277_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX67670.1|837361_838096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67671.1|838412_839435_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX67672.1|839450_840173_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67673.1|840317_841325_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX67674.1|841365_842898_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX67675.1|842894_844013_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX67676.1|844009_844792_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX67677.1|844803_845667_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX70332.1|845685_846783_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67678.1|846851_847778_-	VOC family protein	NA	NA	NA	NA	NA
AZX67679.1|847812_849507_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX67680.1|849706_850642_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX67681.1|850747_851698_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67682.1|851796_852453_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX67683.1|852600_855309_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX67684.1|855318_856338_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX67685.1|856334_857285_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	890032	939296	4088701	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZX67714.1|890032_890983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70333.1|890955_891555_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67715.1|891556_891991_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX67716.1|891987_892422_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67717.1|892405_893209_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX67718.1|893225_894041_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX67719.1|894037_894853_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX67720.1|894999_895701_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67721.1|895728_897687_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX67722.1|897769_898720_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67723.1|898940_899609_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX67724.1|899732_900839_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX67725.1|900851_903965_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX67726.1|903961_905455_+	RND transporter	NA	NA	NA	NA	NA
AZX67727.1|905469_906141_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX67728.1|906184_906679_-	azurin	NA	NA	NA	NA	NA
AZX67729.1|906819_907467_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX70334.1|907570_909619_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX67730.1|909615_911628_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX67731.1|911653_912988_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX67732.1|913096_914089_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67733.1|914155_916240_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX67734.1|916264_917236_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67735.1|917364_918366_-	peptidase M14	NA	NA	NA	NA	NA
AZX67736.1|918399_919641_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX67737.1|919721_920645_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX67738.1|920722_921547_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX67739.1|921743_922760_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX67740.1|922956_923940_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67741.1|925538_926927_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX67742.1|926957_927947_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67743.1|928057_929290_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX67744.1|929571_930372_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67745.1|930394_932626_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX67746.1|933413_933860_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX67747.1|933881_934628_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX67748.1|934771_935749_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX67749.1|936382_936994_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX67750.1|936987_938205_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX67751.1|938345_939296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	948908	1013848	4088701	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX67760.1|948908_949859_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67761.1|949855_951706_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX67762.1|952086_952746_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX67763.1|952833_952986_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67764.1|953094_953262_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67765.1|953273_953954_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX67766.1|954235_954952_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX67767.1|954966_956268_-	phospholipase	NA	NA	NA	NA	NA
AZX67768.1|958412_961301_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX67769.1|961524_962877_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX67770.1|962905_963427_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX67771.1|963423_964878_+	carboxylase	NA	NA	NA	NA	NA
AZX67772.1|964912_965161_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67773.1|965266_966142_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67774.1|966167_967223_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67775.1|967235_968027_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67776.1|968059_969430_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX67777.1|970606_971557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67778.1|971609_971831_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67779.1|971990_972203_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67780.1|972322_973441_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX67781.1|973537_973753_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67782.1|973946_974198_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67783.1|974310_975261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67784.1|975257_975641_-	ferredoxin	NA	NA	NA	NA	NA
AZX67785.1|975695_977513_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX70336.1|977659_978487_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX67786.1|978532_979513_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX67787.1|979509_979722_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67788.1|979718_980900_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX67789.1|981063_981798_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX67790.1|981799_984412_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX67791.1|984547_986461_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX67792.1|987076_987487_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX67793.1|987584_988670_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX67794.1|988768_989719_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67795.1|989715_990690_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX67796.1|990814_991726_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX70337.1|992002_992395_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX67797.1|992524_993475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67798.1|993504_993687_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX67799.1|993725_993983_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67800.1|994459_995641_-	MFS transporter	NA	NA	NA	NA	NA
AZX67801.1|995856_996534_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX67802.1|996530_997304_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX67803.1|997381_997963_-	OmpA family protein	NA	NA	NA	NA	NA
AZX67804.1|998333_1001015_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX67805.1|1001014_1002148_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX67806.1|1002140_1003226_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX67807.1|1003312_1004212_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX67808.1|1004208_1005537_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX67809.1|1005551_1006223_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX67810.1|1006395_1008126_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX67811.1|1008127_1008487_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX67812.1|1008678_1008993_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX67813.1|1009035_1010256_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX67814.1|1010252_1011194_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX67815.1|1011190_1012180_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX67816.1|1012214_1012799_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX67817.1|1012897_1013848_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	1033248	1096399	4088701	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZX67832.1|1033248_1034199_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67833.1|1034303_1035353_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX67834.1|1035490_1036507_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX67835.1|1038015_1038588_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX67836.1|1038647_1039379_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX70339.1|1039430_1040348_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67837.1|1041155_1044335_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX67838.1|1044331_1045714_+	multidrug transporter	NA	NA	NA	NA	NA
AZX67839.1|1045783_1046035_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX67840.1|1046180_1046831_-	SCO family protein	NA	NA	NA	NA	NA
AZX67841.1|1046981_1049096_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX67842.1|1049171_1050023_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX67843.1|1050019_1050646_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX67844.1|1050642_1052397_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX67845.1|1052689_1055395_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX67846.1|1055407_1057069_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX67847.1|1057081_1058872_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX67848.1|1059093_1060269_-	flagellin FliC	NA	NA	NA	NA	NA
AZX67849.1|1060311_1061262_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67850.1|1061360_1062101_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX67851.1|1062295_1064332_+	transketolase	NA	NA	NA	NA	NA
AZX67852.1|1064349_1065360_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX67853.1|1065477_1066671_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX67854.1|1066700_1067474_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX67855.1|1067470_1068661_-	acetate kinase	NA	NA	NA	NA	NA
AZX67856.1|1068686_1069625_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX70340.1|1069621_1071970_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX67857.1|1072124_1072832_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX67858.1|1072869_1074003_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67859.1|1074279_1074828_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX67860.1|1074846_1075332_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX67861.1|1075509_1076448_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX67862.1|1076450_1076768_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67863.1|1076813_1077758_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67864.1|1079438_1080089_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX67865.1|1080142_1080478_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67866.1|1080474_1081335_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX67867.1|1081351_1081633_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67868.1|1081706_1081970_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX67869.1|1082213_1083164_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67870.1|1083462_1084200_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX67871.1|1084635_1084959_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX67872.1|1084993_1085554_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX67873.1|1085674_1086550_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX67874.1|1086562_1087510_+	motility protein MotB	NA	NA	NA	NA	NA
AZX67875.1|1087611_1087905_+	response regulator	NA	NA	NA	NA	NA
AZX67876.1|1087931_1089989_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX67877.1|1090003_1090504_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX67878.1|1090577_1092284_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX67879.1|1093147_1094200_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX67880.1|1094252_1094642_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX67881.1|1094650_1095283_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX67882.1|1095382_1096399_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	1102383	1170545	4088701	tRNA,holin,transposase	uncultured_Mediterranean_phage(25.0%)	55	NA	NA
AZX67887.1|1102383_1103811_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX67888.1|1104748_1105765_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX67889.1|1106097_1107033_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX67890.1|1107082_1108963_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX67891.1|1109029_1109374_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX67892.1|1109518_1110655_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX67893.1|1110651_1111725_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX67894.1|1111882_1113319_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX70342.1|1113409_1114051_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX70343.1|1114386_1115403_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX67895.1|1115735_1118483_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZX70344.1|1118549_1119971_-	siroheme synthase	NA	NA	NA	NA	NA
AZX67896.1|1120234_1120951_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67897.1|1121035_1121353_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX67898.1|1121393_1121807_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX67899.1|1121808_1122168_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67900.1|1122210_1123755_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX67901.1|1123838_1124669_+	transglycosylase	NA	NA	NA	NA	NA
AZX67902.1|1124703_1125858_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX67903.1|1125900_1126773_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67904.1|1126889_1129178_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX67905.1|1130384_1130849_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX67906.1|1130875_1131826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70345.1|1132193_1132970_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX67907.1|1133014_1133872_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX67908.1|1133893_1134910_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX67909.1|1135044_1136085_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX67910.1|1136279_1138361_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX67911.1|1138596_1140090_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX67912.1|1140320_1141115_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX67913.1|1141335_1142694_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX67914.1|1142690_1143533_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX67915.1|1143551_1145438_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX67916.1|1145675_1146308_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX67917.1|1146326_1146929_+	hypothetical protein	NA	NA	NA	NA	NA
AZX67918.1|1147080_1148031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67919.1|1148833_1149634_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67920.1|1149677_1150664_-	homoserine kinase	NA	NA	NA	NA	NA
AZX67921.1|1150803_1151817_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX67922.1|1151813_1152764_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67923.1|1152876_1153335_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX67924.1|1153371_1154685_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67925.1|1154702_1155074_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX67926.1|1155070_1156534_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX67927.1|1156626_1157403_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX67928.1|1157384_1160264_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX67929.1|1160446_1161397_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX67930.1|1161564_1162389_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX67931.1|1162388_1163267_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX67932.1|1164171_1165287_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX67933.1|1165294_1166110_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX67934.1|1166106_1167972_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX67935.1|1168050_1168683_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX67936.1|1168679_1168982_-	hypothetical protein	NA	NA	NA	NA	NA
AZX67937.1|1169024_1170545_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	1352834	1421321	4088701	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZX68079.1|1352834_1353785_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68080.1|1354553_1355192_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX70356.1|1356081_1356528_+	glutamate racemase	NA	NA	NA	NA	NA
AZX68081.1|1356609_1357311_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZX68082.1|1357311_1358079_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZX68083.1|1358075_1359314_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZX68084.1|1359313_1360240_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZX68085.1|1360342_1361458_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68086.1|1361473_1362424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68087.1|1362777_1363359_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZX68088.1|1363355_1364189_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZX70357.1|1364399_1365713_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZX68089.1|1365889_1366771_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZX68090.1|1366790_1367642_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZX68091.1|1367694_1368783_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZX68092.1|1368893_1370021_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70358.1|1370255_1370867_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX68093.1|1370965_1371916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68094.1|1372137_1372515_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZX70359.1|1372662_1373160_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZX68095.1|1373156_1373684_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZX68096.1|1373817_1374633_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68097.1|1374645_1375827_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX68098.1|1375874_1376768_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZX70360.1|1376894_1377365_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68099.1|1377490_1378318_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZX68100.1|1378346_1379123_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZX68101.1|1379119_1379413_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZX68102.1|1379409_1379874_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX68103.1|1379885_1380671_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZX68104.1|1380696_1381197_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZX68105.1|1381279_1382458_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZX68106.1|1384085_1384421_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX68107.1|1384608_1386057_+	CoA transferase	NA	NA	NA	NA	NA
AZX68108.1|1386114_1386459_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZX68109.1|1386565_1387105_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX68110.1|1387197_1388148_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68111.1|1388134_1388617_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68112.1|1388886_1389318_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68113.1|1389499_1389904_-	DoxX family protein	NA	NA	NA	NA	NA
AZX68114.1|1391140_1391464_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68115.1|1391466_1392354_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX68116.1|1392386_1392812_-	universal stress protein	NA	NA	NA	NA	NA
AZX68117.1|1392883_1393237_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68118.1|1393476_1393983_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68119.1|1394021_1395353_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZX68120.1|1395412_1396228_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZX68121.1|1396224_1397079_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZX70361.1|1400141_1402685_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZX68122.1|1404051_1405806_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZX68123.1|1405802_1407923_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZX68124.1|1407927_1410123_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZX70362.1|1410119_1413461_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZX68125.1|1416263_1417214_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68126.1|1417279_1417459_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70363.1|1417575_1418298_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX68127.1|1418317_1419463_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX68128.1|1420370_1421321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	1481812	1537300	4088701	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZX68176.1|1481812_1482763_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68177.1|1483964_1484411_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZX68178.1|1484403_1485879_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZX68179.1|1485875_1486631_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZX68180.1|1486623_1487634_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZX68181.1|1487623_1489300_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZX68182.1|1489612_1489945_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZX68183.1|1489958_1490354_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68184.1|1490363_1490690_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZX68185.1|1490686_1491013_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX68186.1|1490939_1491962_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX68187.1|1491958_1492339_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZX68188.1|1492356_1492785_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZX68189.1|1492792_1494166_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZX70367.1|1494306_1494684_-	flagellar protein	NA	NA	NA	NA	NA
AZX68190.1|1494946_1496254_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZX68191.1|1496314_1497145_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX68192.1|1497141_1497630_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZX68193.1|1497671_1499192_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZX70368.1|1499235_1499712_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX68194.1|1500515_1503113_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZX68195.1|1503142_1503964_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZX68196.1|1504690_1505440_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZX68197.1|1505572_1506502_+	elongation factor Ts	NA	NA	NA	NA	NA
AZX68198.1|1506599_1507316_+	UMP kinase	NA	NA	NA	NA	NA
AZX68199.1|1507330_1507891_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZX68200.1|1507928_1508822_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZX68201.1|1508841_1509699_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZX68202.1|1509695_1510895_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZX68203.1|1510934_1512269_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZX68204.1|1512321_1514658_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZX70369.1|1514783_1515347_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZX68205.1|1515355_1516447_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZX68206.1|1516518_1516974_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZX68207.1|1516974_1517769_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZX68208.1|1517765_1518947_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZX68209.1|1518933_1519539_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZX68210.1|1519535_1520309_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZX68211.1|1520320_1521148_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZX68212.1|1521309_1523673_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZX68213.1|1523740_1524460_-	GMP synthase	NA	NA	NA	NA	NA
AZX68214.1|1524583_1525009_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZX68215.1|1525043_1525994_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68216.1|1526111_1527038_+	paraslipin	NA	NA	NA	NA	NA
AZX68217.1|1527103_1528261_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX68218.1|1528241_1528709_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX68219.1|1528856_1529807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68220.1|1529823_1530258_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX68221.1|1530247_1530598_+	RnfH family protein	NA	NA	NA	NA	NA
AZX68222.1|1530794_1531949_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX68223.1|1531945_1533118_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX68224.1|1533165_1534059_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX68225.1|1534104_1534542_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX68226.1|1534601_1535291_+	VIT family protein	NA	NA	NA	NA	NA
AZX68227.1|1535300_1536251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68228.1|1536349_1537300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	1576623	1634710	4088701	tRNA,protease,transposase	Planktothrix_phage(15.38%)	60	NA	NA
AZX68261.1|1576623_1577436_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX68262.1|1577580_1578675_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68263.1|1578886_1579516_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68264.1|1579518_1581186_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX68265.1|1581200_1581857_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX68266.1|1582336_1583287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68267.1|1583313_1584087_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX68268.1|1584098_1585340_+	MFS transporter	NA	NA	NA	NA	NA
AZX68269.1|1587126_1588077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68270.1|1588108_1589206_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX68271.1|1589202_1590153_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68272.1|1590574_1590967_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68273.1|1590972_1591749_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX68274.1|1592136_1594086_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX68275.1|1594106_1594652_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX68276.1|1594788_1595745_+	glutathione synthetase	NA	NA	NA	NA	NA
AZX68277.1|1595755_1596154_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX68278.1|1596269_1596539_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX68279.1|1596660_1598355_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX68280.1|1598519_1598744_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68281.1|1599342_1600293_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX68282.1|1600334_1601495_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68283.1|1601655_1602576_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX68284.1|1602588_1603230_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX68285.1|1603226_1603898_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX68286.1|1603894_1604665_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX68287.1|1604763_1605714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68288.1|1605930_1606335_-	GFA family protein	NA	NA	NA	NA	NA
AZX68289.1|1606408_1607599_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX68290.1|1607632_1607959_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX68291.1|1607981_1608497_-	transporter	NA	NA	NA	NA	NA
AZX68292.1|1608555_1609782_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX68293.1|1609959_1611090_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX68294.1|1611324_1611906_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX68295.1|1612042_1613107_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX68296.1|1613191_1613638_-	GFA family protein	NA	NA	NA	NA	NA
AZX68297.1|1613862_1614744_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX68298.1|1614798_1615050_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX68299.1|1615052_1615454_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX68300.1|1615473_1615710_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68301.1|1615717_1616197_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX68302.1|1616382_1616862_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX68303.1|1616864_1618055_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX68304.1|1618059_1619112_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX68305.1|1619248_1620271_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX68306.1|1620362_1621199_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68307.1|1621391_1622297_+	agmatinase	NA	NA	NA	NA	NA
AZX68308.1|1622323_1623115_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68309.1|1623137_1623830_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX68310.1|1623851_1624604_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX68311.1|1624732_1626292_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX68312.1|1626323_1626869_+	acyl dehydratase	NA	NA	NA	NA	NA
AZX68313.1|1627006_1628263_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX68314.1|1628279_1629974_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX68315.1|1630131_1631019_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX68316.1|1631056_1631989_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX70371.1|1632002_1632491_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX68317.1|1632608_1633187_+|protease	protease	protease	NA	NA	NA	NA
AZX68318.1|1633259_1633661_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX68319.1|1633759_1634710_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	1689913	1761067	4088701	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZX68366.1|1689913_1690864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68367.1|1690885_1692106_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX68368.1|1692291_1693704_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX68369.1|1693767_1694835_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX68370.1|1694831_1696322_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX70374.1|1696331_1697276_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68371.1|1697435_1698134_+	pirin family protein	NA	NA	NA	NA	NA
AZX68372.1|1698211_1699117_+	pirin family protein	NA	NA	NA	NA	NA
AZX68373.1|1699136_1700087_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68374.1|1700185_1700980_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX68375.1|1700984_1702655_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX68376.1|1702778_1703828_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68377.1|1704149_1704926_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX68378.1|1704990_1705893_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68379.1|1707186_1707990_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX68380.1|1710683_1711070_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX68381.1|1711085_1713176_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZX68382.1|1713227_1714181_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX70375.1|1714195_1715083_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68383.1|1715220_1716747_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX70376.1|1716845_1717346_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX68384.1|1717669_1719625_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX68385.1|1719792_1721877_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68386.1|1721903_1722689_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX68387.1|1723544_1724315_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX68388.1|1724314_1725055_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX68389.1|1725096_1726266_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX68390.1|1726297_1728382_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX68391.1|1728378_1729269_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX68392.1|1729265_1730363_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX68393.1|1730385_1731675_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX68394.1|1731686_1732712_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX68395.1|1732708_1734766_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX68396.1|1734779_1735955_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX68397.1|1736036_1736987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68398.1|1737045_1737819_+	oxidoreductase	NA	NA	NA	NA	NA
AZX68399.1|1737811_1739368_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX68400.1|1739364_1740315_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68401.1|1741641_1742244_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68402.1|1742483_1743185_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX68403.1|1743178_1743961_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX68404.1|1744145_1745096_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68405.1|1745194_1745932_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX68406.1|1746121_1746880_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX68407.1|1746926_1747916_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX68408.1|1748093_1749062_-	transporter	NA	NA	NA	NA	NA
AZX68409.1|1750601_1751570_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX68410.1|1751578_1752520_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX68411.1|1752993_1754004_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70377.1|1753994_1755509_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX68412.1|1755505_1756852_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70378.1|1756854_1757889_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX68413.1|1757938_1759564_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX68414.1|1760116_1761067_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	1781858	1843206	4088701	tRNA,transposase	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZX68428.1|1781858_1782809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70384.1|1783102_1783825_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX68429.1|1784263_1785451_-	MFS transporter	NA	NA	NA	NA	NA
AZX68430.1|1785454_1785835_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68431.1|1787554_1788526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX68432.1|1788539_1789253_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX68433.1|1789257_1790175_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68434.1|1790281_1790578_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68435.1|1790676_1791627_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68436.1|1792785_1795719_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX68437.1|1795718_1796063_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX68438.1|1796059_1797688_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX68439.1|1797684_1798164_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX68440.1|1798160_1798445_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX68441.1|1798441_1798768_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZX68442.1|1798923_1799874_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68443.1|1799917_1800460_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68444.1|1800557_1801406_+	hydrolase	NA	NA	NA	NA	NA
AZX68445.1|1801398_1801905_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX68446.1|1801901_1802903_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX68447.1|1802915_1803710_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX68448.1|1803758_1805660_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX68449.1|1805656_1806280_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68450.1|1806406_1807531_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68451.1|1807848_1809516_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX68452.1|1809671_1810448_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX68453.1|1810532_1811531_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68454.1|1811527_1812301_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX68455.1|1813285_1814236_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68456.1|1814259_1814724_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX68457.1|1814870_1816079_+	flavohemoprotein	NA	NA	NA	NA	NA
AZX68458.1|1816089_1816560_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX68459.1|1816678_1817968_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX68460.1|1820708_1821659_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68461.1|1821757_1822774_-	folate-binding protein	NA	NA	NA	NA	NA
AZX68462.1|1822940_1823987_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX68463.1|1823983_1824610_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX68464.1|1824606_1825659_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX68465.1|1825708_1826479_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX68466.1|1826529_1827366_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68467.1|1827561_1828302_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68468.1|1828376_1829120_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68469.1|1829781_1830555_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX70385.1|1831692_1832982_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX68470.1|1834592_1835840_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX68471.1|1835849_1837559_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX68472.1|1837555_1838494_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX68473.1|1838490_1839774_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX68474.1|1839777_1840260_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX68475.1|1840260_1841247_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68476.1|1841419_1842139_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68477.1|1842255_1843206_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2024391	2094043	4088701	tRNA,transposase	Staphylococcus_phage(16.67%)	56	NA	NA
AZX68610.1|2024391_2027049_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX68611.1|2027126_2028329_-	MFS transporter	NA	NA	NA	NA	NA
AZX68612.1|2028325_2028838_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70393.1|2028960_2029299_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX68613.1|2029674_2030625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68614.1|2030723_2031674_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68615.1|2031837_2033733_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX68616.1|2033846_2034014_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX68617.1|2034077_2034314_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX68618.1|2034682_2035882_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX68619.1|2037397_2038348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68620.1|2038799_2039801_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68621.1|2039973_2040831_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX68622.1|2040827_2042090_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX68623.1|2042190_2042565_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX68624.1|2042613_2043825_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX68625.1|2043909_2044680_+	spermidine synthase	NA	NA	NA	NA	NA
AZX68626.1|2044793_2045558_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70394.1|2045673_2046810_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX68627.1|2046806_2047613_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX68628.1|2049357_2050329_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX68629.1|2050485_2050998_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX68630.1|2051156_2052131_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68631.1|2053131_2053926_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX70395.1|2053951_2054758_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX68632.1|2054868_2055459_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX68633.1|2055469_2056648_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68634.1|2056750_2057125_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX68635.1|2057377_2058709_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX68636.1|2058775_2062006_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX68637.1|2063496_2064243_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX68638.1|2064327_2064789_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX68639.1|2064826_2065885_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX68640.1|2065847_2067677_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX68641.1|2067716_2068289_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX68642.1|2069713_2070625_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX68643.1|2070853_2072176_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX68644.1|2072535_2073171_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68645.1|2073130_2074081_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68646.1|2074951_2075824_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX68647.1|2075901_2077041_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68648.1|2077390_2078656_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX68649.1|2078661_2079189_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX68650.1|2079193_2080012_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX68651.1|2080011_2080734_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX68652.1|2080755_2081070_+	ferredoxin	NA	NA	NA	NA	NA
AZX68653.1|2081066_2082236_+	CoA transferase	NA	NA	NA	NA	NA
AZX68654.1|2082266_2083142_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX68655.1|2083138_2084458_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX68656.1|2084530_2085727_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX68657.1|2085737_2087225_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68658.1|2089819_2090719_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68659.1|2090856_2091822_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX68660.1|2091920_2092871_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68661.1|2092914_2093106_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68662.1|2093092_2094043_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2105539	2154935	4088701	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZX68674.1|2105539_2106490_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68675.1|2107627_2107924_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68676.1|2108098_2109451_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX68677.1|2109593_2110610_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX70397.1|2112589_2113603_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX68678.1|2113689_2114595_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68679.1|2114751_2115096_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68680.1|2115253_2115712_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX68681.1|2115725_2117942_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX68682.1|2117938_2119000_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68683.1|2119028_2120003_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX68684.1|2119954_2120773_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX68685.1|2120785_2121394_-	peptidase S16	NA	NA	NA	NA	NA
AZX68686.1|2121568_2121964_+	VOC family protein	NA	NA	NA	NA	NA
AZX68687.1|2121982_2123422_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX68688.1|2123450_2123798_+	GFA family protein	NA	NA	NA	NA	NA
AZX68689.1|2123816_2124767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68690.1|2125419_2126370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68691.1|2126453_2128271_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX68692.1|2128344_2128992_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68693.1|2129004_2129934_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX68694.1|2130103_2130568_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68695.1|2130815_2131496_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68696.1|2131544_2133236_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX68697.1|2133251_2133803_-	ATPase	NA	NA	NA	NA	NA
AZX68698.1|2133799_2134171_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX68699.1|2134283_2135120_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX68700.1|2135130_2135655_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX68701.1|2135752_2135932_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX68702.1|2136061_2137093_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX68703.1|2137166_2137523_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX70398.1|2137512_2138388_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX68704.1|2138486_2139371_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68705.1|2139392_2140688_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX68706.1|2141636_2142287_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX70399.1|2142374_2143895_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX68707.1|2144152_2146018_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX68708.1|2147063_2148014_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68709.1|2148986_2149346_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX68710.1|2149333_2150770_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX68711.1|2150766_2151420_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX68712.1|2151416_2152616_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX68713.1|2152713_2153988_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX68714.1|2153984_2154935_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2166139	2299113	4088701	tRNA,protease,transposase	Klosneuvirus(12.5%)	113	NA	NA
AZX68728.1|2166139_2167090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68729.1|2167188_2168139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68730.1|2168098_2168512_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX68731.1|2168796_2169096_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70401.1|2169505_2171674_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX68732.1|2172473_2174504_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX68733.1|2174523_2174736_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX68734.1|2175013_2175553_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX68735.1|2175666_2176974_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX68736.1|2177038_2178196_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX68737.1|2178379_2179279_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX68738.1|2179297_2180602_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX68739.1|2180567_2181674_-	GTPase HflX	NA	NA	NA	NA	NA
AZX68740.1|2181761_2181998_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX68741.1|2182136_2183207_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX68742.1|2183210_2184566_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX68743.1|2184592_2185753_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX68744.1|2185755_2186394_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68745.1|2186395_2187700_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX68746.1|2187740_2189036_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX68747.1|2189042_2189549_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX68748.1|2189545_2190694_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX68749.1|2190721_2191147_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX68750.1|2191469_2194352_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX68751.1|2194444_2195200_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX68752.1|2195965_2197315_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX68753.1|2197413_2198364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68754.1|2198437_2198911_+	RidA family protein	NA	NA	NA	NA	NA
AZX68755.1|2198936_2200145_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX68756.1|2200141_2200915_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX68757.1|2200914_2201538_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX68758.1|2201703_2201964_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX68759.1|2202267_2202849_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68760.1|2202915_2203170_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX68761.1|2203156_2205781_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX68762.1|2205852_2206671_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68763.1|2206667_2207273_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZX68764.1|2207310_2208444_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZX70402.1|2210159_2210534_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68765.1|2210631_2211906_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68766.1|2211909_2213487_-	lipoprotein	NA	NA	NA	NA	NA
AZX68767.1|2214393_2215749_-	amidase	NA	NA	NA	NA	NA
AZX68768.1|2215745_2217380_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZX68769.1|2217372_2218203_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX68770.1|2218220_2219165_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX68771.1|2219217_2220792_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68772.1|2220839_2221190_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68773.1|2222662_2223619_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68774.1|2223768_2225106_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX68775.1|2225110_2226367_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX68776.1|2226562_2227609_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZX68777.1|2227666_2228035_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZX68778.1|2228165_2229038_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX68779.1|2229114_2230017_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68780.1|2231073_2232291_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZX68781.1|2233564_2234515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68782.1|2234715_2235525_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX68783.1|2235649_2236600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68784.1|2236596_2237490_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX68785.1|2237614_2237809_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX68786.1|2237808_2238150_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX68787.1|2238159_2240022_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX68788.1|2240151_2240664_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX68789.1|2240666_2240990_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX68790.1|2240991_2241402_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX68791.1|2241439_2242651_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX68792.1|2242668_2243181_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX68793.1|2243396_2243888_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX68794.1|2244140_2246177_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX68795.1|2246254_2247457_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX68796.1|2247507_2248236_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX68797.1|2249793_2250744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68798.1|2251314_2251527_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68799.1|2251544_2252276_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68800.1|2252310_2252952_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX68801.1|2252944_2253661_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX68802.1|2255825_2256602_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX68803.1|2256623_2257781_-	thiolase	NA	NA	NA	NA	NA
AZX68804.1|2257777_2258209_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68805.1|2258205_2259009_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX68806.1|2259022_2259478_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX68807.1|2259490_2260462_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX68808.1|2260527_2261751_-	CoA transferase	NA	NA	NA	NA	NA
AZX68809.1|2261978_2262929_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX68810.1|2263052_2265506_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX68811.1|2265694_2266999_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX68812.1|2267103_2267757_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX68813.1|2267759_2269070_-	trigger factor	NA	NA	NA	NA	NA
AZX68814.1|2269248_2269827_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX68815.1|2269938_2270139_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX68816.1|2270484_2271051_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX68817.1|2271134_2271338_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX68818.1|2271644_2271965_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68819.1|2272006_2272288_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68820.1|2272362_2273619_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX68821.1|2274001_2274331_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX68822.1|2275901_2276723_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX68823.1|2276722_2277862_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX68824.1|2277868_2278765_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX68825.1|2278761_2280687_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX68826.1|2281046_2283659_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX68827.1|2283711_2286012_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX68828.1|2286008_2287217_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX68829.1|2287478_2287853_+	hypothetical protein	NA	NA	NA	NA	NA
AZX68830.1|2287849_2288800_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX68831.1|2288898_2290893_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX68832.1|2290952_2291918_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX68833.1|2291907_2294769_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX68834.1|2294771_2295278_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX68835.1|2295382_2296591_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX68836.1|2296592_2297531_-	hypothetical protein	NA	NA	NA	NA	NA
AZX68837.1|2297692_2298166_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX68838.1|2298162_2299113_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2575918	2640134	4088701	tRNA,protease,transposase	Salmonella_phage(16.67%)	60	NA	NA
AZX69068.1|2575918_2577406_-|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
AZX69069.1|2577443_2578505_-	siderophore-interacting protein	NA	NA	NA	NA	NA
AZX69070.1|2578501_2579002_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69071.1|2579014_2579614_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AZX69072.1|2579610_2580111_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69073.1|2580112_2581342_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AZX70415.1|2581531_2581771_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AZX69074.1|2581953_2582706_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AZX69075.1|2582707_2583643_-	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AZX69076.1|2583724_2584711_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AZX69077.1|2584710_2585769_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AZX69078.1|2585825_2586008_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AZX70416.1|2586059_2586653_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AZX69079.1|2586761_2587361_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZX69080.1|2587357_2588068_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX69081.1|2588069_2588897_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AZX69082.1|2590713_2591955_-	MFS transporter	NA	NA	NA	NA	NA
AZX69083.1|2591966_2592740_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX69084.1|2592766_2593717_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69085.1|2593815_2594598_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX69086.1|2594686_2595913_-	transporter	NA	NA	NA	NA	NA
AZX69087.1|2596638_2598024_+	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX69088.1|2598042_2598648_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX69089.1|2598644_2600501_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX69090.1|2600497_2601298_+	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX69091.1|2601312_2602506_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX69092.1|2602573_2603548_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX69093.1|2603670_2604894_+	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX69094.1|2605004_2607209_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX69095.1|2607503_2608163_+	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX69096.1|2608170_2608377_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69097.1|2608715_2609471_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX69098.1|2609486_2609648_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69099.1|2609741_2610257_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX69100.1|2610529_2610847_+	virulence factor	NA	NA	NA	NA	NA
AZX69101.1|2611034_2611283_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69102.1|2611561_2612917_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX69103.1|2612963_2614343_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX69104.1|2614405_2615038_-	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX70417.1|2615037_2617398_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX69105.1|2617439_2618399_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX69106.1|2618385_2619072_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX69107.1|2619068_2619401_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX69108.1|2619516_2620467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69109.1|2620565_2621516_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69110.1|2621512_2623579_-	cation acetate symporter	NA	NA	NA	NA	NA
AZX69111.1|2623578_2623851_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX69112.1|2624545_2624635_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX69113.1|2624634_2626419_+	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX69114.1|2626442_2628608_+	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX69115.1|2628618_2629218_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX69116.1|2632039_2632735_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX69117.1|2632743_2633694_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69118.1|2633792_2635034_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69119.1|2635183_2636164_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69120.1|2636362_2637619_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX69121.1|2637821_2638247_+	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX69122.1|2638288_2638651_-	cytochrome	NA	NA	NA	NA	NA
AZX69123.1|2638663_2639017_-	cytochrome C	NA	NA	NA	NA	NA
AZX69124.1|2639183_2640134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2719811	2760480	4088701	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
AZX69192.1|2719811_2720762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69193.1|2720872_2721055_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69194.1|2721154_2721751_-	lipoprotein	NA	NA	NA	NA	NA
AZX69195.1|2721934_2723026_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69196.1|2723525_2723936_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69197.1|2723994_2724336_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX69198.1|2724341_2726759_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX69199.1|2726771_2727794_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX69200.1|2727868_2728228_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX69201.1|2728243_2728441_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX69202.1|2728776_2729727_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69203.1|2729713_2729902_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69204.1|2729921_2730371_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX69205.1|2730367_2731318_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69206.1|2731428_2732877_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX69207.1|2732991_2733273_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69208.1|2733376_2734327_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69209.1|2734571_2735285_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX69210.1|2735407_2735635_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX69211.1|2735929_2736568_-	DedA family protein	NA	NA	NA	NA	NA
AZX69212.1|2736640_2737711_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX69213.1|2737707_2738658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69214.1|2739073_2739598_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX69215.1|2739601_2739871_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69216.1|2740069_2741131_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX69217.1|2741214_2742849_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX69218.1|2742850_2743654_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX69219.1|2743682_2744642_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX69220.1|2744645_2746160_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69221.1|2746196_2747201_-	peptidase M20	NA	NA	NA	NA	NA
AZX69222.1|2747632_2748103_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX69223.1|2748138_2748750_-	LysE family translocator	NA	NA	NA	NA	NA
AZX69224.1|2748780_2749404_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX69225.1|2749484_2751017_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX69226.1|2751051_2752293_-	MFS transporter	NA	NA	NA	NA	NA
AZX69227.1|2752336_2753368_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX69228.1|2753364_2754534_-	amine oxidase	NA	NA	NA	NA	NA
AZX69229.1|2754527_2755208_-	anti-sigma factor	NA	NA	NA	NA	NA
AZX69230.1|2755369_2756212_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69231.1|2756374_2757346_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX69232.1|2757517_2758396_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX69233.1|2758418_2759489_-	FUSC family protein	NA	NA	NA	NA	NA
AZX69234.1|2759529_2760480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2815945	2888815	4088701	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZX69278.1|2815945_2816362_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX69279.1|2816472_2817105_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX69280.1|2817133_2817577_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX69281.1|2817598_2818690_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69282.1|2818744_2819545_-	aldolase	NA	NA	NA	NA	NA
AZX69283.1|2819680_2820301_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX69284.1|2820440_2820914_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69285.1|2822053_2823004_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69286.1|2823000_2830662_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX69287.1|2830902_2834949_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX69288.1|2835261_2835843_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX69289.1|2835839_2837138_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX69290.1|2837217_2838246_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX69291.1|2838169_2838520_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69292.1|2838506_2839457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69293.1|2839453_2840404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69294.1|2840720_2841326_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX69295.1|2841379_2842693_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX69296.1|2842767_2843238_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX69297.1|2843237_2844026_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX69298.1|2844036_2845689_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX69299.1|2845776_2846727_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70427.1|2847888_2848395_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX69300.1|2848391_2849156_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX69301.1|2849171_2849456_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX69302.1|2849520_2850510_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX69303.1|2850681_2851611_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX69304.1|2851582_2852269_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX69305.1|2852302_2852848_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX69306.1|2852892_2854158_+	peptidase M48	NA	NA	NA	NA	NA
AZX69307.1|2854154_2855057_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX69308.1|2856238_2857183_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX69309.1|2857277_2858795_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69310.1|2858836_2860465_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX69311.1|2860572_2861454_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69312.1|2864566_2864941_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX69313.1|2864965_2865304_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX69314.1|2865347_2866982_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX69315.1|2867020_2868367_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX70428.1|2868474_2869896_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX69316.1|2869965_2870550_-	nitroreductase	NA	NA	NA	NA	NA
AZX69317.1|2870652_2871603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69318.1|2871737_2872844_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69319.1|2872854_2873952_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX69320.1|2874096_2875302_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX69321.1|2875308_2875830_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX69322.1|2875826_2876318_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX69323.1|2876314_2876566_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX69324.1|2876546_2877032_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX69325.1|2877167_2880629_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69326.1|2880625_2881531_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX69327.1|2881540_2881972_-	lipoprotein	NA	NA	NA	NA	NA
AZX70429.1|2882218_2882722_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX69328.1|2882733_2884200_+	MFS transporter	NA	NA	NA	NA	NA
AZX69329.1|2884274_2885150_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70430.1|2885146_2886154_-	biotin synthase	NA	NA	NA	NA	NA
AZX69330.1|2886621_2886927_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX69331.1|2887017_2887608_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69332.1|2887798_2888815_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2891958	2958769	4088701	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZX69335.1|2891958_2892909_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69336.1|2893007_2893958_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69337.1|2893954_2894749_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX69338.1|2894780_2895485_-	oxidoreductase	NA	NA	NA	NA	NA
AZX69339.1|2895559_2896360_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX69340.1|2896356_2896764_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX69341.1|2896760_2897402_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX69342.1|2897394_2899416_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX69343.1|2900655_2901987_+	MFS transporter	NA	NA	NA	NA	NA
AZX69344.1|2901983_2902934_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69345.1|2904640_2904946_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69346.1|2905614_2905953_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX69347.1|2910506_2911109_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69348.1|2911205_2912495_+	MFS transporter	NA	NA	NA	NA	NA
AZX69349.1|2912552_2913284_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX69350.1|2913280_2914084_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX69351.1|2914080_2915169_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX69352.1|2915165_2916095_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX69353.1|2916243_2917389_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69354.1|2917410_2918361_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69355.1|2918691_2922513_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX69356.1|2922669_2923338_-	lipoprotein	NA	NA	NA	NA	NA
AZX69357.1|2923342_2925016_-	MCE family protein	NA	NA	NA	NA	NA
AZX69358.1|2925034_2926354_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX69359.1|2926358_2928710_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX70431.1|2928729_2930898_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX69360.1|2930894_2936084_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX69361.1|2936173_2936488_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX69362.1|2936715_2936961_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX69363.1|2937055_2937574_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX69364.1|2937673_2938879_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX69365.1|2938994_2940392_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX69366.1|2940508_2941087_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX69367.1|2941159_2942551_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX69368.1|2942718_2943669_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69369.1|2943949_2944570_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX69370.1|2944566_2944980_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX69371.1|2944976_2946020_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX69372.1|2946075_2946264_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69373.1|2946273_2947038_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX69374.1|2947128_2947785_+	adenylate kinase	NA	NA	NA	NA	NA
AZX69375.1|2947876_2948635_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX69376.1|2948660_2950262_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX69377.1|2950462_2951467_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX69378.1|2951567_2951831_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX69379.1|2951948_2952725_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX69380.1|2953315_2954266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69381.1|2956649_2957762_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX69382.1|2957818_2958769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	2989155	3029393	4088701	transposase	Planktothrix_phage(50.0%)	39	NA	NA
AZX69411.1|2989155_2990106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69412.1|2990092_2990338_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69413.1|2990226_2991123_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX69414.1|2993400_2995626_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX69415.1|2995790_2996879_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX69416.1|2996835_2997489_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX69417.1|2997536_2998334_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69418.1|2998865_2999816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69419.1|2999896_3001045_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX69420.1|3001101_3002052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69421.1|3002038_3002257_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69422.1|3002150_3002456_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX69423.1|3002484_3002919_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX69424.1|3002920_3004165_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX69425.1|3004161_3004872_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70433.1|3004886_3005798_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69426.1|3006167_3007118_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69427.1|3007209_3007614_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69428.1|3007610_3008069_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69429.1|3008075_3008984_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70434.1|3008980_3009847_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX69430.1|3009833_3010661_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX69431.1|3010671_3011799_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX69432.1|3012876_3014115_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69433.1|3014156_3015419_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69434.1|3015425_3016178_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX69435.1|3016229_3016415_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70435.1|3016690_3017155_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX69436.1|3017186_3017846_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX69437.1|3017990_3020099_+	AsmA family protein	NA	NA	NA	NA	NA
AZX69438.1|3020095_3021046_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69439.1|3021149_3021770_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70436.1|3021873_3022614_+	oxidoreductase	NA	NA	NA	NA	NA
AZX69440.1|3023748_3024873_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69441.1|3024918_3025287_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69442.1|3025528_3026479_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69443.1|3027514_3028057_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69444.1|3028261_3028456_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69445.1|3028442_3029393_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3267406	3302244	4088701	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZX69632.1|3267406_3268357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69633.1|3268801_3269113_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX69634.1|3269112_3269643_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69635.1|3269805_3270756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69636.1|3271045_3271510_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX69637.1|3271524_3273030_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX69638.1|3273283_3274891_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX69639.1|3274946_3275852_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX69640.1|3276292_3277243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69641.1|3277341_3278292_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69642.1|3278373_3278955_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX70454.1|3279379_3279685_+	RND transporter	NA	NA	NA	NA	NA
AZX69643.1|3279698_3281033_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX69644.1|3281054_3281594_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX69645.1|3281741_3282206_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX69646.1|3282348_3283464_-	GTP-binding protein	NA	NA	NA	NA	NA
AZX69647.1|3283740_3284244_-	transcriptional repressor	NA	NA	NA	NA	NA
AZX69648.1|3284381_3284582_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69649.1|3284572_3285295_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX69650.1|3285291_3286188_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX69651.1|3286184_3287120_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70455.1|3287125_3287749_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX69652.1|3287739_3288708_+	nickel transporter	NA	NA	NA	NA	NA
AZX69653.1|3288756_3290898_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX69654.1|3290910_3291891_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX69655.1|3291905_3292598_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX69656.1|3292624_3293536_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX69657.1|3293578_3294469_-	acyltransferase	NA	NA	NA	NA	NA
AZX69658.1|3294465_3295320_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX69659.1|3295468_3296767_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX69660.1|3296877_3297129_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX69661.1|3297208_3298249_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX69662.1|3298528_3299947_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX69663.1|3300017_3300353_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX69664.1|3300352_3301195_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX69665.1|3301293_3302244_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3314073	3352494	4088701	tRNA,integrase,protease,transposase	Planktothrix_phage(33.33%)	35	3322739:3322755	3357058:3357074
AZX69674.1|3314073_3315024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70457.1|3315336_3316815_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX69675.1|3316821_3317931_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX69676.1|3317942_3318623_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX69677.1|3318644_3319400_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70458.1|3319535_3320420_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX69678.1|3320507_3321089_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69679.1|3321181_3321304_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69680.1|3321349_3321649_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX70459.1|3321800_3322226_-	hypothetical protein	NA	NA	NA	NA	NA
3322739:3322755	attL	GCTGCGCGCGCGTGGCG	NA	NA	NA	NA
AZX69681.1|3324432_3324936_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX69682.1|3324951_3325902_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69683.1|3325888_3326086_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69684.1|3326429_3327203_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69685.1|3327335_3328346_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69686.1|3328497_3330153_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX69687.1|3330207_3330549_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX69688.1|3330562_3332002_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX69689.1|3332134_3332950_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69690.1|3332968_3333157_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69691.1|3333143_3334094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69692.1|3335481_3336429_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69693.1|3336655_3337396_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69694.1|3337481_3338432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69695.1|3338524_3339478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX69696.1|3339464_3339665_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69697.1|3339661_3340873_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX69698.1|3340888_3343840_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX69699.1|3343841_3346961_-	restriction endonuclease	NA	NA	NA	NA	NA
AZX70460.1|3346957_3347098_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX69700.1|3347108_3348155_-	Fic family protein	NA	NA	NA	NA	NA
AZX69701.1|3348496_3349624_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX69702.1|3349903_3350995_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX69703.1|3351067_3351850_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX69704.1|3351846_3352494_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3357058:3357074	attR	GCTGCGCGCGCGTGGCG	NA	NA	NA	NA
>prophage 25
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3401381	3455122	4088701	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZX69741.1|3401381_3402332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69742.1|3402736_3403381_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX69743.1|3403405_3403990_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX69744.1|3404090_3404708_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX69745.1|3404710_3406426_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX69746.1|3406422_3406731_-	urease subunit beta	NA	NA	NA	NA	NA
AZX69747.1|3406747_3407383_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX69748.1|3407409_3407712_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX69749.1|3407812_3408667_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX69750.1|3409248_3409521_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX69751.1|3409938_3410346_-	GFA family protein	NA	NA	NA	NA	NA
AZX69752.1|3410715_3411510_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69753.1|3411610_3412846_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX69754.1|3412914_3413931_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69755.1|3413927_3415319_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX69756.1|3415315_3416512_+	MFS transporter	NA	NA	NA	NA	NA
AZX69757.1|3416508_3418047_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX69758.1|3418043_3419303_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69759.1|3421243_3422194_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69760.1|3422960_3424055_-	CoA transferase	NA	NA	NA	NA	NA
AZX69761.1|3424047_3425382_-	CoA ligase	NA	NA	NA	NA	NA
AZX69762.1|3425335_3426019_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69763.1|3426044_3427208_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX69764.1|3427204_3428206_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX69765.1|3428205_3429078_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX69766.1|3429074_3429824_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX69767.1|3429820_3430612_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX69768.1|3430608_3431748_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69769.1|3432056_3432809_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX69770.1|3432842_3433625_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX69771.1|3433628_3434018_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX69772.1|3435157_3436021_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX69773.1|3436056_3437145_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69774.1|3437141_3438092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69775.1|3438078_3438447_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69776.1|3438445_3441424_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69777.1|3442350_3443229_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX69778.1|3445177_3446128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69779.1|3446124_3446592_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX69780.1|3446634_3447405_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX69781.1|3447425_3448226_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX69782.1|3448236_3449646_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX69783.1|3449740_3450526_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX70463.1|3450765_3451782_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX69784.1|3451889_3452282_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX69785.1|3452419_3453100_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX69786.1|3453104_3454103_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69787.1|3454171_3455122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3461277	3520577	4088701	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZX69791.1|3461277_3463041_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX69792.1|3463152_3464031_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX69793.1|3464143_3464959_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX69794.1|3464962_3465214_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX69795.1|3465298_3466315_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX69796.1|3466645_3466867_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69797.1|3469227_3470145_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX69798.1|3470642_3471851_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX69799.1|3471930_3473502_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69800.1|3473619_3474555_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX69801.1|3474743_3475688_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX69802.1|3475756_3475972_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69803.1|3476255_3481973_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX69804.1|3481978_3483106_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX69805.1|3483161_3483788_+	aminotransferase	NA	NA	NA	NA	NA
AZX70464.1|3484059_3485076_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX69806.1|3485171_3485882_-	oxidoreductase	NA	NA	NA	NA	NA
AZX70465.1|3485878_3486868_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69807.1|3486999_3488595_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX69808.1|3488597_3489335_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69809.1|3489490_3490363_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX69810.1|3490631_3491852_+	MFS transporter	NA	NA	NA	NA	NA
AZX69811.1|3491848_3492508_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX69812.1|3492579_3493212_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX69813.1|3493241_3493760_+	flavin reductase	NA	NA	NA	NA	NA
AZX69814.1|3493770_3494880_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX69815.1|3494926_3495781_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX69816.1|3495782_3496685_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69817.1|3497907_3498858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX69818.1|3500614_3501604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69819.1|3501779_3502568_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX69820.1|3502564_3503596_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX69821.1|3503614_3504178_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX69822.1|3504233_3505754_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX69823.1|3506017_3506722_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX69824.1|3506729_3507467_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX69825.1|3507572_3507947_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX69826.1|3507989_3509279_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69827.1|3509275_3510445_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX69828.1|3510441_3511281_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX69829.1|3511340_3512276_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX69830.1|3512288_3513239_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69831.1|3513337_3514300_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX69832.1|3514331_3514691_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX69833.1|3514815_3515718_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX69834.1|3515719_3517492_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX69835.1|3517526_3518303_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX69836.1|3519626_3520577_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3535515	3593588	4088701	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZX69848.1|3535515_3536466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69849.1|3536594_3537728_-	peptidase	NA	NA	NA	NA	NA
AZX69850.1|3537771_3538677_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX69851.1|3538679_3540380_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX69852.1|3540376_3541297_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX69853.1|3541304_3542282_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX69854.1|3542340_3543375_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX69855.1|3545349_3545586_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69856.1|3545712_3546576_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX69857.1|3546664_3547486_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX69858.1|3547565_3548303_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX69859.1|3548299_3549292_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX69860.1|3549405_3550068_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69861.1|3550112_3551261_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX69862.1|3553584_3554535_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69863.1|3554875_3555826_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69864.1|3555924_3556875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69865.1|3557171_3557669_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69866.1|3557711_3559487_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX70468.1|3559533_3560361_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX69867.1|3560367_3561102_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX69868.1|3562271_3563066_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69869.1|3563355_3563946_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX69870.1|3563979_3565308_-	amidase	NA	NA	NA	NA	NA
AZX69871.1|3565382_3566528_-	transporter	NA	NA	NA	NA	NA
AZX69872.1|3566639_3567638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69873.1|3567600_3568035_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX69874.1|3569551_3570436_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX69875.1|3570432_3571638_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX69876.1|3571634_3572495_-	endonuclease	NA	NA	NA	NA	NA
AZX69877.1|3572607_3574398_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX69878.1|3574438_3575104_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX69879.1|3575104_3575413_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX70469.1|3575578_3576865_-	hypothetical protein	NA	NA	NA	NA	NA
AZX69880.1|3578298_3579249_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69881.1|3581200_3582415_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX69882.1|3582520_3583510_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX69883.1|3583506_3584115_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX69884.1|3584127_3584757_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX69885.1|3584753_3585374_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX69886.1|3585405_3586197_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX69887.1|3587039_3587504_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX69888.1|3587522_3588449_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX69889.1|3588502_3589789_-	cytochrome c	NA	NA	NA	NA	NA
AZX69890.1|3590719_3591592_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX69891.1|3591588_3592539_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX69892.1|3592637_3593588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3603388	3674729	4088701	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
AZX69901.1|3603388_3604663_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX69902.1|3605385_3606336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69903.1|3606434_3607385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69904.1|3607483_3609859_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX69905.1|3609878_3610715_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX69906.1|3610711_3611509_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX69907.1|3611505_3613695_-	CoA-binding protein	NA	NA	NA	NA	NA
AZX69908.1|3613746_3614733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69909.1|3614814_3616617_-	DNA alkylation response protein	NA	NA	NA	NA	NA
AZX69910.1|3616874_3618992_+	crotonase	NA	NA	NA	NA	NA
AZX69911.1|3618988_3620206_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX69912.1|3620227_3620716_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX69913.1|3620865_3622698_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
AZX70472.1|3622895_3623876_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
AZX69914.1|3623932_3624952_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69915.1|3625015_3625909_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69916.1|3626307_3627087_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX69917.1|3627086_3629228_+	CoA-binding protein	NA	NA	NA	NA	NA
AZX70473.1|3629375_3630320_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69918.1|3630403_3631387_-	oxidoreductase	NA	NA	NA	NA	NA
AZX69919.1|3631751_3633026_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX69920.1|3633056_3633485_+	RidA family protein	NA	NA	NA	NA	NA
AZX69921.1|3633495_3634170_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
AZX69922.1|3634162_3635335_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
AZX69923.1|3635467_3636487_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69924.1|3636667_3637858_+	pimeloyl-CoA dehydrogenase large subunit	NA	NA	NA	NA	NA
AZX69925.1|3637871_3639002_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX69926.1|3639045_3640767_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
AZX70474.1|3640885_3641848_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69927.1|3641954_3642926_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69928.1|3643544_3644213_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX70475.1|3644209_3644617_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX69929.1|3644613_3645564_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69930.1|3648008_3648743_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX69931.1|3649152_3649332_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70476.1|3649522_3650836_+	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX69932.1|3650851_3652363_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX69933.1|3652359_3653565_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX69934.1|3653760_3654738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX69935.1|3654830_3655325_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX69936.1|3655454_3656513_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX69937.1|3656509_3658129_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX70477.1|3658088_3658397_-	GtrA family protein	NA	NA	NA	NA	NA
AZX69938.1|3658316_3659420_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX69939.1|3659416_3659872_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69940.1|3659877_3660801_-	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX69941.1|3660890_3661550_-	LysE family translocator	NA	NA	NA	NA	NA
AZX69942.1|3661546_3662461_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX69943.1|3662549_3663500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70478.1|3663578_3664556_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69944.1|3665016_3665616_+	hypothetical protein	NA	NA	NA	NA	NA
AZX69945.1|3665684_3666677_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69946.1|3666726_3668316_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX69947.1|3668356_3669253_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX69948.1|3669249_3670956_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX69949.1|3671060_3672302_+	CoA transferase	NA	NA	NA	NA	NA
AZX69950.1|3672298_3673069_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX69951.1|3673117_3673819_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX69952.1|3673745_3674729_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3772865	3909944	4088701	tRNA,protease,transposase	Klosneuvirus(10.53%)	117	NA	NA
AZX70045.1|3772865_3773816_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70046.1|3773931_3774192_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70047.1|3774383_3775334_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70048.1|3775393_3775954_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZX70049.1|3777456_3778338_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70050.1|3778451_3779654_+	MFS transporter	NA	NA	NA	NA	NA
AZX70051.1|3779782_3781642_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX70052.1|3781719_3782529_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX70053.1|3782599_3783601_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX70054.1|3783632_3784493_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX70055.1|3784692_3785697_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZX70056.1|3785693_3787280_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70057.1|3787288_3788215_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX70058.1|3788237_3788864_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX70059.1|3788962_3789913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70485.1|3789909_3791046_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX70060.1|3791099_3791876_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX70061.1|3791900_3792359_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX70486.1|3792498_3793140_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX70062.1|3793204_3794587_+	cytochrome b	NA	NA	NA	NA	NA
AZX70063.1|3794606_3795461_+	cytochrome c1	NA	NA	NA	NA	NA
AZX70064.1|3795619_3796231_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZX70065.1|3796240_3796690_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX70066.1|3797208_3797349_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70067.1|3797356_3797518_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX70068.1|3798740_3799019_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX70069.1|3800161_3800737_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX70070.1|3800772_3802452_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX70071.1|3802448_3804200_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX70072.1|3804196_3804322_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX70073.1|3804335_3805490_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX70074.1|3805505_3807125_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX70075.1|3807208_3807754_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70076.1|3808313_3809264_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70077.1|3809994_3810975_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70078.1|3810988_3812113_+	CoA transferase	NA	NA	NA	NA	NA
AZX70079.1|3812120_3813875_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX70080.1|3813981_3814881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70081.1|3814945_3815929_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX70082.1|3816064_3817045_+	AEC family transporter	NA	NA	NA	NA	NA
AZX70083.1|3817061_3818453_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX70084.1|3818604_3819141_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX70487.1|3819212_3820457_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX70085.1|3820599_3821238_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70086.1|3821324_3823214_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX70087.1|3823210_3824152_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX70088.1|3824257_3825307_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX70089.1|3825559_3826261_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX70090.1|3826257_3826956_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX70091.1|3826956_3828312_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX70092.1|3828308_3828800_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX70093.1|3828818_3829775_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70094.1|3831185_3833288_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70095.1|3833458_3834502_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70096.1|3834545_3835289_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70097.1|3836310_3836721_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX70098.1|3837670_3838468_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX70099.1|3838566_3839517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70100.1|3839513_3840464_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70101.1|3840550_3841501_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70102.1|3841615_3842617_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZX70103.1|3842707_3843274_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZX70104.1|3843592_3845506_+	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZX70105.1|3845547_3846978_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX70106.1|3847090_3848503_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX70107.1|3848519_3849215_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70108.1|3849433_3850384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70109.1|3850408_3851308_-	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX70110.1|3851462_3852011_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX70111.1|3852049_3852769_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX70112.1|3852840_3855783_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX70113.1|3856376_3859172_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX70114.1|3859629_3860562_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX70115.1|3860673_3862023_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX70116.1|3862054_3862780_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX70488.1|3862830_3863682_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70117.1|3863811_3864498_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX70118.1|3864497_3865142_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX70119.1|3865198_3865474_+	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX70120.1|3865499_3865796_+	YciI family protein	NA	NA	NA	NA	NA
AZX70121.1|3865796_3866621_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX70122.1|3866617_3867667_+	cyclase	NA	NA	NA	NA	NA
AZX70123.1|3867771_3868095_-	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX70124.1|3868251_3869202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70125.1|3869815_3870784_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70126.1|3870812_3872024_-	CoA transferase	NA	NA	NA	NA	NA
AZX70127.1|3872093_3872834_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70128.1|3872978_3875843_-	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX70129.1|3875902_3876277_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX70130.1|3876358_3877459_-	aminomethyltransferase	NA	NA	NA	NA	NA
AZX70131.1|3877853_3878747_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX70132.1|3878743_3879436_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX70133.1|3879481_3880432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70134.1|3880530_3881763_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX70135.1|3881811_3884082_-	lysine decarboxylase	NA	NA	NA	NA	NA
AZX70136.1|3884236_3884734_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70489.1|3884860_3885307_+	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX70137.1|3885335_3885755_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX70138.1|3885782_3886205_+	glyoxalase	NA	NA	NA	NA	NA
AZX70139.1|3886212_3886776_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX70140.1|3886836_3890511_-	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX70141.1|3890507_3892412_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX70142.1|3892415_3893504_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX70143.1|3893602_3893875_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70144.1|3894124_3896203_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX70145.1|3896240_3896975_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX70146.1|3897035_3897851_-	lipoprotein	NA	NA	NA	NA	NA
AZX70147.1|3897942_3898470_-	lipoprotein	NA	NA	NA	NA	NA
AZX70148.1|3899585_3900536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70490.1|3900742_3901219_+	bacterioferritin	NA	NA	NA	NA	NA
AZX70149.1|3901300_3901984_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70150.1|3902008_3903616_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX70151.1|3903664_3904294_-	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX70152.1|3904327_3905710_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX70153.1|3906040_3906670_+	LemA family protein	NA	NA	NA	NA	NA
AZX70154.1|3906647_3907550_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70155.1|3908993_3909944_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	3938729	3997203	4088701	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
AZX70178.1|3938729_3939680_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70179.1|3940946_3941825_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70180.1|3941852_3942155_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZX70181.1|3942247_3943687_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AZX70182.1|3943685_3944333_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70183.1|3944759_3946460_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX70493.1|3946550_3947804_-	amidase	NA	NA	NA	NA	NA
AZX70494.1|3948697_3949087_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70495.1|3949083_3950094_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70184.1|3950930_3951764_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX70185.1|3951760_3952666_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AZX70186.1|3952764_3953715_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70187.1|3953815_3954637_+	phosphodiesterase	NA	NA	NA	NA	NA
AZX70188.1|3954742_3955783_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX70189.1|3955825_3957118_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX70190.1|3957128_3958004_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX70191.1|3958000_3958801_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX70192.1|3958876_3959893_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX70193.1|3960175_3960493_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70496.1|3960583_3960931_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX70194.1|3961218_3962901_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX70195.1|3962910_3963594_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX70196.1|3963655_3964285_+	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX70197.1|3964366_3965560_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX70198.1|3966459_3967410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70199.1|3967445_3968507_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX70200.1|3968503_3969400_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX70201.1|3969457_3970006_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX70202.1|3970020_3971022_-	lipoyl synthase	NA	NA	NA	NA	NA
AZX70203.1|3971083_3971746_-	octanoyltransferase	NA	NA	NA	NA	NA
AZX70204.1|3971753_3972029_-	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX70205.1|3972104_3973049_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX70206.1|3973051_3974308_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX70207.1|3974440_3975094_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX70208.1|3975123_3975726_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70209.1|3976658_3977498_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX70210.1|3977497_3978634_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX70211.1|3978702_3979569_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX70212.1|3979565_3980369_+	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX70213.1|3980393_3980549_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70214.1|3980565_3981852_-	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX70215.1|3981853_3982861_-	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX70216.1|3982991_3984044_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX70217.1|3984047_3984623_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX70218.1|3984626_3985727_+	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX70219.1|3985734_3986823_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX70220.1|3986846_3988106_+	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX70221.1|3988123_3989356_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX70222.1|3989352_3989946_+	sugar transferase	NA	NA	NA	NA	NA
AZX70223.1|3990207_3991314_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX70224.1|3991310_3992015_+	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX70225.1|3993362_3995237_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX70497.1|3995233_3996178_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70226.1|3996252_3997203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025371	Bordetella pertussis strain H640 chromosome, complete genome	4088701	4004393	4064304	4088701	protease,transposase	Planktothrix_phage(50.0%)	51	NA	NA
AZX70232.1|4004393_4004708_-|transposase	transposase	transposase	NA	NA	NA	NA
AZX70233.1|4004801_4005752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70234.1|4006173_4007355_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70235.1|4007984_4009256_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX70236.1|4009290_4010349_+	oxidoreductase	NA	NA	NA	NA	NA
AZX70237.1|4010452_4010770_+	ferredoxin	NA	NA	NA	NA	NA
AZX70238.1|4010782_4011364_+|protease	protease	protease	NA	NA	NA	NA
AZX70499.1|4011558_4012395_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70239.1|4012818_4013760_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70240.1|4013943_4014363_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX70241.1|4014362_4015589_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX70242.1|4016389_4017340_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70243.1|4017438_4018389_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70244.1|4018385_4019879_-	RND transporter	NA	NA	NA	NA	NA
AZX70245.1|4019875_4022983_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX70246.1|4022979_4026048_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX70247.1|4026044_4027295_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX70248.1|4027475_4028237_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX70249.1|4028269_4028920_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX70250.1|4028922_4029762_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX70251.1|4030002_4030746_+	hypothetical protein	NA	NA	NA	NA	NA
AZX70252.1|4030828_4031176_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70253.1|4031273_4032116_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX70254.1|4032160_4033048_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX70255.1|4033074_4033263_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX70256.1|4033360_4034818_+	MFS transporter	NA	NA	NA	NA	NA
AZX70257.1|4034804_4036331_+	glycerol kinase	NA	NA	NA	NA	NA
AZX70258.1|4036349_4036817_-	hypothetical protein	NA	NA	NA	NA	NA
AZX70259.1|4036816_4037839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70260.1|4037959_4038700_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX70261.1|4038754_4039855_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX70262.1|4039856_4041047_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX70263.1|4041166_4042183_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX70264.1|4042501_4043173_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX70265.1|4043169_4044078_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX70266.1|4044289_4044937_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX70267.1|4048788_4049865_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX70268.1|4049875_4050685_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX70269.1|4050774_4051548_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX70270.1|4051730_4052681_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX70500.1|4052569_4053592_+	CoA transferase	NA	NA	NA	NA	NA
AZX70271.1|4053581_4054736_+	CoA transferase	NA	NA	NA	NA	NA
AZX70272.1|4054775_4056188_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX70273.1|4056210_4057179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX70274.1|4057180_4058005_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX70275.1|4058001_4058763_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AZX70276.1|4058843_4059530_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX70277.1|4059703_4060711_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZX70278.1|4060707_4061487_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX70501.1|4061568_4062807_+	CoA transferase	NA	NA	NA	NA	NA
AZX70279.1|4063353_4064304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
