The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	0	122073	4102199	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZX63337.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX63338.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX63339.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX63340.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX63341.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX63342.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX63343.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX63344.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX63345.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX63346.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX63347.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX63348.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX63349.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX63350.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX66723.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX63351.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63352.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX63353.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX63354.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63355.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX63356.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63357.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX63358.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX66724.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63359.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX63360.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX63361.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63362.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX63363.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX63364.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX63365.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX63366.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX63367.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX63368.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX63369.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX63370.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX63371.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63372.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63373.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX63374.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63375.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX63376.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX63377.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63378.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX63379.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX63380.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX63381.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63382.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63383.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX63384.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63385.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX63386.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX63387.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66725.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63388.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX63389.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX63390.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX63391.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX63392.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63393.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63394.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX63395.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX63396.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX63397.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX63398.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66726.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63399.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX63400.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66727.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63401.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX63402.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX63403.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX63404.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX63405.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX63406.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX63407.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX63408.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX63409.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX63410.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX63411.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX63412.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX63413.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63414.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX63415.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX63416.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX63417.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX63418.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63419.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX63420.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX63421.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX63422.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX63423.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX63424.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX63425.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX63426.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX63427.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX63428.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63429.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX63430.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX63431.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX63432.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX66728.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX63433.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63434.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX63435.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX63436.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX63437.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX63438.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX63439.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX63440.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	164893	301502	4102199	tRNA,protease,transposase	Klosneuvirus(10.53%)	117	NA	NA
AZX63471.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63472.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63473.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZX63474.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX63475.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX63476.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX63477.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66734.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZX63478.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63479.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZX63480.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZX63481.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX63482.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX63483.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63484.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX63485.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX63486.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX63487.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX63488.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZX63489.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX66735.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX63490.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63491.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX63492.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX63493.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX63494.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX63495.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX63496.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX63497.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX63498.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX63499.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63500.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZX63501.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63502.1|206741_207065_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX63503.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
AZX63504.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX63505.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
AZX63506.1|209362_209638_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX63507.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX63508.1|210338_211025_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX66736.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63509.1|212056_212782_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX63510.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX63511.1|214274_215207_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX63512.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX63513.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX63514.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX63515.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX63516.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX63517.1|224452_225403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63518.1|225389_225569_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63519.1|225621_226317_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63520.1|226333_227746_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX63521.1|227858_229289_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX63522.1|229330_231244_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZX63523.1|231562_232129_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZX63524.1|232219_233221_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZX63525.1|233335_234286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63526.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63527.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63528.1|236368_237166_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX63529.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX63530.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63531.1|240334_241378_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX63532.1|241548_243651_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63533.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63534.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX63535.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX63536.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX63537.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX63538.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX63539.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX63540.1|251622_253512_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX63541.1|253598_254237_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66737.1|254379_255624_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX63542.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX63543.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX63544.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
AZX63545.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX63546.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63547.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX63548.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
AZX63549.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63550.1|265572_266523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63551.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63552.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX63553.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX63554.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX63555.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX63556.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX63557.1|274099_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX63558.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX63559.1|277139_278090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63560.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63561.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX63562.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63563.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX63564.1|279654_280266_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX63565.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
AZX63566.1|281298_282681_-	cytochrome b	NA	NA	NA	NA	NA
AZX63567.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX63568.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX63569.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX66738.1|284839_285976_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX63570.1|285972_286923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63571.1|287021_287648_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX63572.1|287670_288597_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX63573.1|288605_290192_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX63574.1|290188_291193_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZX63575.1|291392_292253_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX63576.1|292284_293286_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX63577.1|293356_294166_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX63578.1|294243_296103_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX63579.1|296231_297434_-	MFS transporter	NA	NA	NA	NA	NA
AZX63580.1|297547_298429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63581.1|299931_300492_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZX63582.1|300551_301502_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	390856	448365	4102199	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX63669.1|390856_391807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63670.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
AZX63671.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX63672.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
AZX63673.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63674.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
AZX63675.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63676.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66744.1|400017_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX63677.1|401156_402140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63678.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63679.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX63680.1|403583_404825_-	CoA transferase	NA	NA	NA	NA	NA
AZX63681.1|404929_406636_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX63682.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63683.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX63684.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63685.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66745.1|411329_412307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63686.1|412385_413336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63687.1|413424_414339_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX63688.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
AZX63689.1|415084_416008_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX63690.1|416013_416469_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63691.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX66746.1|417488_417797_+	GtrA family protein	NA	NA	NA	NA	NA
AZX63692.1|417756_419376_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX63693.1|419372_420431_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX63694.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX63695.1|421147_422125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63696.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX63697.1|423522_425034_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX66747.1|425049_426363_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX63698.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63699.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX63700.1|430321_431272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63701.1|431403_431802_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX63702.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
AZX63703.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX63704.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX63705.1|436404_436923_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX63706.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX63707.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
AZX63708.1|439209_439995_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX63709.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63710.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63711.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX63712.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX63713.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX63714.1|447414_448365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	636791	736903	4102199	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(13.33%)	108	NA	NA
AZX63878.1|636791_637742_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63879.1|637840_638641_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63880.1|638702_639086_+	thioredoxin	NA	NA	NA	NA	NA
AZX63881.1|639097_640531_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX63882.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX66754.1|641069_641738_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63883.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX63884.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX63885.1|643203_643626_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX63886.1|643642_644743_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX63887.1|644839_646357_-	peptidase	NA	NA	NA	NA	NA
AZX63888.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX63889.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX63890.1|648256_649351_-	porin	NA	NA	NA	NA	NA
AZX63891.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66755.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63892.1|651694_652054_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63893.1|652435_653473_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63894.1|653789_655130_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX63895.1|655139_655592_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63896.1|655688_656870_+	monooxygenase	NA	NA	NA	NA	NA
AZX63897.1|656929_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX63898.1|658001_658241_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX63899.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX63900.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX63901.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX63902.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX63903.1|662104_663073_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX63904.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX63905.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX63906.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX63907.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX63908.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
AZX63909.1|669837_670593_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66756.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63910.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63911.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX63912.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX63913.1|673906_675649_+	sulfite reductase	NA	NA	NA	NA	NA
AZX63914.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX63915.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX63916.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63917.1|678339_679290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63918.1|679541_679754_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66757.1|679819_680431_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX63919.1|680910_681231_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63920.1|681223_681922_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63921.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63922.1|682175_683126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66758.1|683801_684251_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX63923.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX63924.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX66759.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX63925.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX63926.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX63927.1|689421_690372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63928.1|690389_691037_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX63929.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63930.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX63931.1|691844_692045_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63932.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX63933.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX63934.1|692831_693254_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63935.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX63936.1|694016_694535_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX63937.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX63938.1|694891_695182_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX63939.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX63940.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63941.1|698256_698790_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX63942.1|698786_699176_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX63943.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX63944.1|703129_703546_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63945.1|703764_704028_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX63946.1|704027_704840_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63947.1|704844_705087_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63948.1|705065_705617_+	lysozyme	NA	NA	NA	NA	NA
AZX63949.1|705598_706132_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX63950.1|706128_706410_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63951.1|706752_706953_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63952.1|706959_707631_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX63953.1|707986_708673_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX63954.1|708653_709226_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX63955.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX63956.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX63957.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
AZX63958.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
AZX63959.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX63960.1|713671_714988_+	protein TolB	NA	NA	NA	NA	NA
AZX63961.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX63962.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX63963.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX63964.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX63965.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63966.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63967.1|720109_720328_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63968.1|720314_721265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66760.1|723543_724632_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63969.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
AZX63970.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX63971.1|727358_728156_-	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX63972.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
AZX63973.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX63974.1|732218_733322_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX63975.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX63976.1|734157_734859_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63977.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX63978.1|735952_736903_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	748190	821352	4102199	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZX63989.1|748190_749141_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63990.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX63991.1|750926_752192_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX63992.1|752349_753300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63993.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX66761.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX63994.1|756713_757685_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63995.1|757816_758341_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX63996.1|758300_759251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63997.1|759472_761668_-	DNA methylase	NA	NA	NA	NA	NA
AZX63998.1|761740_762148_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX63999.1|762270_763221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64000.1|763336_763780_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX64001.1|763842_764637_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX64002.1|764802_765939_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX64003.1|766009_767143_-	GTPase ObgE	NA	NA	NA	NA	NA
AZX64004.1|767292_767553_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX64005.1|767586_767898_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX64006.1|768322_769471_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX64007.1|769585_770551_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX64008.1|770819_771686_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64009.1|771816_773865_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX64010.1|773882_775880_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX64011.1|775914_777252_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX64012.1|777514_779368_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64013.1|779422_780904_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX64014.1|780919_781507_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX66762.1|781589_781769_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64015.1|781955_787076_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX64016.1|787153_789292_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX64017.1|789288_790611_+	protein CyaD	NA	NA	NA	NA	NA
AZX64018.1|790612_792037_+	protein CyaE	NA	NA	NA	NA	NA
AZX64019.1|792127_793036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64020.1|793100_794015_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64021.1|794852_795536_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX64022.1|795552_796296_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX64023.1|796325_797186_+	aminotransferase	NA	NA	NA	NA	NA
AZX64024.1|797193_797760_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64025.1|797848_798805_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64026.1|798849_799602_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX64027.1|799598_801344_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX64028.1|801428_802163_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64029.1|802479_803502_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX64030.1|803517_804240_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64031.1|804384_805392_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX64032.1|805432_806965_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX64033.1|806961_808080_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX64034.1|808076_808859_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX64035.1|808870_809734_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX66763.1|809752_810850_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64036.1|810918_811845_-	VOC family protein	NA	NA	NA	NA	NA
AZX64037.1|811879_813574_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX64038.1|813773_814709_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX64039.1|814814_815765_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64040.1|815863_816520_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX64041.1|816667_819376_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX64042.1|819385_820405_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX64043.1|820401_821352_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	854099	903363	4102199	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZX64072.1|854099_855050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66764.1|855022_855622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64073.1|855623_856058_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX64074.1|856054_856489_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64075.1|856472_857276_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX64076.1|857292_858108_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX64077.1|858104_858920_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX64078.1|859066_859768_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64079.1|859795_861754_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX64080.1|861836_862787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64081.1|863007_863676_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX64082.1|863799_864906_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX64083.1|864918_868032_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX64084.1|868028_869522_+	RND transporter	NA	NA	NA	NA	NA
AZX64085.1|869536_870208_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX64086.1|870251_870746_-	azurin	NA	NA	NA	NA	NA
AZX64087.1|870886_871534_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX66765.1|871637_873686_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX64088.1|873682_875695_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX64089.1|875720_877055_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX64090.1|877163_878156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64091.1|878222_880307_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX64092.1|880331_881303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64093.1|881431_882433_-	peptidase M14	NA	NA	NA	NA	NA
AZX64094.1|882466_883708_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX64095.1|883788_884712_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX64096.1|884789_885614_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX64097.1|885810_886827_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX64098.1|887023_888007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64099.1|889605_890994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX64100.1|891024_892014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64101.1|892124_893357_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX64102.1|893638_894439_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64103.1|894461_896693_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX64104.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX64105.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX64106.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX64107.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX64108.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX64109.1|902412_903363_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	912975	977915	4102199	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX64118.1|912975_913926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64119.1|913922_915773_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX64120.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX64121.1|916900_917053_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64122.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64123.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX64124.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX64125.1|919033_920335_-	phospholipase	NA	NA	NA	NA	NA
AZX64126.1|922479_925368_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX64127.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX64128.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX64129.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
AZX64130.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64131.1|929333_930209_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64132.1|930234_931290_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64133.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64134.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX64135.1|934673_935624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64136.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64137.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64138.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX64139.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64140.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64141.1|938377_939328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64142.1|939324_939708_-	ferredoxin	NA	NA	NA	NA	NA
AZX64143.1|939762_941580_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX66767.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX64144.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX64145.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64146.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX64147.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX64148.1|945866_948479_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX64149.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX64150.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX64151.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX64152.1|952835_953786_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64153.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64154.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX66768.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX64155.1|956591_957542_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64156.1|957571_957754_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX64157.1|957792_958050_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64158.1|958526_959708_-	MFS transporter	NA	NA	NA	NA	NA
AZX64159.1|959923_960601_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX64160.1|960597_961371_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX64161.1|961448_962030_-	OmpA family protein	NA	NA	NA	NA	NA
AZX64162.1|962400_965082_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX64163.1|965081_966215_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX64164.1|966207_967293_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX64165.1|967379_968279_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX64166.1|968275_969604_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX64167.1|969618_970290_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX64168.1|970462_972193_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX64169.1|972194_972554_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX64170.1|972745_973060_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX64171.1|973102_974323_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX64172.1|974319_975261_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX64173.1|975257_976247_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX64174.1|976281_976866_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX64175.1|976964_977915_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	997320	1060479	4102199	transposase	Enterococcus_phage(16.67%)	52	NA	NA
AZX64190.1|997320_998271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64191.1|998375_999425_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX64192.1|999562_1000579_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX64193.1|1002087_1002660_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX64194.1|1002719_1003451_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX66770.1|1003502_1004420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64195.1|1005227_1008407_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX64196.1|1008403_1009786_+	multidrug transporter	NA	NA	NA	NA	NA
AZX64197.1|1009855_1010107_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX64198.1|1010252_1010903_-	SCO family protein	NA	NA	NA	NA	NA
AZX64199.1|1011053_1013168_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX64200.1|1013243_1014095_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX64201.1|1014091_1014718_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX64202.1|1014714_1016469_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX64203.1|1016761_1019467_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX64204.1|1019479_1021141_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX64205.1|1021153_1022944_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX64206.1|1023165_1024341_-	flagellin FliC	NA	NA	NA	NA	NA
AZX64207.1|1024383_1025334_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64208.1|1025432_1026173_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX64209.1|1026367_1028404_+	transketolase	NA	NA	NA	NA	NA
AZX64210.1|1028421_1029432_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX64211.1|1029549_1030743_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX64212.1|1030772_1031546_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX64213.1|1031542_1032733_-	acetate kinase	NA	NA	NA	NA	NA
AZX64214.1|1032758_1033697_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX66771.1|1033693_1036042_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX64215.1|1036196_1036904_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX64216.1|1036941_1038075_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64217.1|1038926_1039412_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX64218.1|1039589_1040528_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX64219.1|1040530_1040848_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64220.1|1040893_1041838_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64221.1|1043518_1044169_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX64222.1|1044222_1044558_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64223.1|1044554_1045415_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX64224.1|1045431_1045713_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64225.1|1045786_1046050_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX64226.1|1046293_1047244_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64227.1|1047542_1048280_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX64228.1|1048715_1049039_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX64229.1|1049073_1049634_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX64230.1|1049754_1050630_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX64231.1|1050642_1051590_+	motility protein MotB	NA	NA	NA	NA	NA
AZX64232.1|1051691_1051985_+	response regulator	NA	NA	NA	NA	NA
AZX64233.1|1052011_1054069_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX64234.1|1054083_1054584_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX64235.1|1054657_1056364_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX64236.1|1057227_1058280_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX64237.1|1058332_1058722_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX64238.1|1058730_1059363_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX64239.1|1059462_1060479_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	1066463	1134625	4102199	tRNA,holin,transposase	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
AZX64244.1|1066463_1067891_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX64245.1|1068828_1069845_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX64246.1|1070177_1071113_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX64247.1|1071162_1073043_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX64248.1|1073109_1073454_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX64249.1|1073598_1074735_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX64250.1|1074731_1075805_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX64251.1|1075962_1077399_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX66773.1|1077489_1078131_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX64252.1|1078466_1079483_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX66774.1|1082629_1084051_-	siroheme synthase	NA	NA	NA	NA	NA
AZX64253.1|1084314_1085031_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64254.1|1085115_1085433_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX64255.1|1085473_1085887_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX64256.1|1085888_1086248_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64257.1|1086290_1087835_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX64258.1|1087918_1088749_+	transglycosylase	NA	NA	NA	NA	NA
AZX64259.1|1088783_1089938_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX64260.1|1089980_1090853_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64261.1|1090969_1093258_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX64262.1|1094464_1094929_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX64263.1|1094955_1095906_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66775.1|1096273_1097050_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX64264.1|1097094_1097952_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX64265.1|1097973_1098990_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX64266.1|1099124_1100165_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX64267.1|1100359_1102441_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX64268.1|1102676_1104170_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX64269.1|1104400_1105195_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX64270.1|1105415_1106774_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX64271.1|1106770_1107613_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX64272.1|1107631_1109518_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX64273.1|1109755_1110388_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX64274.1|1110406_1111009_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64275.1|1111160_1112111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64276.1|1112913_1113714_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64277.1|1113757_1114744_-	homoserine kinase	NA	NA	NA	NA	NA
AZX64278.1|1114883_1115897_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX64279.1|1115893_1116844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64280.1|1116956_1117415_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX64281.1|1117451_1118765_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64282.1|1118782_1119154_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX64283.1|1119150_1120614_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX64284.1|1120706_1121483_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX64285.1|1121464_1124344_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX64286.1|1124526_1125477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64287.1|1125644_1126469_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX64288.1|1126468_1127347_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX64289.1|1128251_1129367_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64290.1|1129374_1130190_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX64291.1|1130186_1132052_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX64292.1|1132130_1132763_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64293.1|1132759_1133062_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64294.1|1133104_1134625_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	1316914	1385401	4102199	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZX64436.1|1316914_1317865_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64437.1|1318633_1319272_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX66786.1|1320161_1320608_+	glutamate racemase	NA	NA	NA	NA	NA
AZX64438.1|1320689_1321391_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZX64439.1|1321391_1322159_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZX64440.1|1322155_1323394_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZX64441.1|1323393_1324320_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZX64442.1|1324422_1325538_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64443.1|1325553_1326504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64444.1|1326857_1327439_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZX64445.1|1327435_1328269_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZX66787.1|1328479_1329793_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZX64446.1|1329969_1330851_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZX64447.1|1330870_1331722_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZX64448.1|1331774_1332863_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZX64449.1|1332973_1334101_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX66788.1|1334335_1334947_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX64450.1|1335045_1335996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64451.1|1336217_1336595_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZX66789.1|1336742_1337240_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZX64452.1|1337236_1337764_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZX64453.1|1337897_1338713_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64454.1|1338725_1339907_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX64455.1|1339954_1340848_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZX66790.1|1340974_1341445_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64456.1|1341570_1342398_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZX64457.1|1342426_1343203_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZX64458.1|1343199_1343493_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZX64459.1|1343489_1343954_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX64460.1|1343965_1344751_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZX64461.1|1344776_1345277_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZX64462.1|1345359_1346538_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZX64463.1|1348165_1348501_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX64464.1|1348688_1350137_+	CoA transferase	NA	NA	NA	NA	NA
AZX66791.1|1350194_1350539_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZX64465.1|1350645_1351185_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX64466.1|1351277_1352228_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64467.1|1352214_1352697_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64468.1|1352966_1353398_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64469.1|1353579_1353984_-	DoxX family protein	NA	NA	NA	NA	NA
AZX64470.1|1355220_1355544_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64471.1|1355546_1356434_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX64472.1|1356466_1356892_-	universal stress protein	NA	NA	NA	NA	NA
AZX64473.1|1356963_1357317_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64474.1|1357556_1358063_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64475.1|1358101_1359433_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZX64476.1|1359492_1360308_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZX64477.1|1360304_1361159_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZX66792.1|1364221_1366765_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZX64478.1|1368131_1369886_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZX64479.1|1369882_1372003_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZX64480.1|1372007_1374203_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZX66793.1|1374199_1377541_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZX64481.1|1380343_1381294_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64482.1|1381359_1381539_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66794.1|1381655_1382378_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX64483.1|1382397_1383543_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX64484.1|1384450_1385401_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	1445892	1501380	4102199	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZX64533.1|1445892_1446843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64534.1|1448044_1448491_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZX64535.1|1448483_1449959_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZX64536.1|1449955_1450711_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZX64537.1|1450703_1451714_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZX64538.1|1451703_1453380_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZX64539.1|1453692_1454025_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZX64540.1|1454038_1454434_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64541.1|1454443_1454770_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZX64542.1|1454766_1455093_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX64543.1|1455019_1456042_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX64544.1|1456038_1456419_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZX64545.1|1456436_1456865_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZX64546.1|1456872_1458246_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZX66797.1|1458386_1458764_-	flagellar protein	NA	NA	NA	NA	NA
AZX64547.1|1459026_1460334_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZX64548.1|1460394_1461225_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX64549.1|1461221_1461710_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZX64550.1|1461751_1463272_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZX66798.1|1463315_1463792_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX64551.1|1464595_1467193_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZX64552.1|1467222_1468044_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZX64553.1|1468770_1469520_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZX64554.1|1469652_1470582_+	elongation factor Ts	NA	NA	NA	NA	NA
AZX64555.1|1470679_1471396_+	UMP kinase	NA	NA	NA	NA	NA
AZX64556.1|1471410_1471971_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZX64557.1|1472008_1472902_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZX64558.1|1472921_1473779_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZX64559.1|1473775_1474975_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZX64560.1|1475014_1476349_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZX64561.1|1476401_1478738_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZX66799.1|1478863_1479427_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZX64562.1|1479435_1480527_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZX64563.1|1480598_1481054_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZX64564.1|1481054_1481849_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZX64565.1|1481845_1483027_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZX64566.1|1483013_1483619_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZX64567.1|1483615_1484389_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZX64568.1|1484400_1485228_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZX64569.1|1485389_1487753_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZX64570.1|1487820_1488540_-	GMP synthase	NA	NA	NA	NA	NA
AZX64571.1|1488663_1489089_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZX64572.1|1489123_1490074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64573.1|1490191_1491118_+	paraslipin	NA	NA	NA	NA	NA
AZX64574.1|1491183_1492341_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX64575.1|1492321_1492789_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX64576.1|1492936_1493887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64577.1|1493903_1494338_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX64578.1|1494327_1494678_+	RnfH family protein	NA	NA	NA	NA	NA
AZX64579.1|1494874_1496029_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX64580.1|1496025_1497198_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX64581.1|1497245_1498139_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX64582.1|1498184_1498622_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX64583.1|1498681_1499371_+	VIT family protein	NA	NA	NA	NA	NA
AZX64584.1|1499380_1500331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64585.1|1500429_1501380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	1540703	1598785	4102199	tRNA,protease,transposase	Planktothrix_phage(15.38%)	60	NA	NA
AZX64618.1|1540703_1541516_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX64619.1|1541660_1542755_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64620.1|1542966_1543596_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64621.1|1543598_1545266_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX64622.1|1545280_1545937_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX64623.1|1546416_1547367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64624.1|1547393_1548167_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX64625.1|1548178_1549420_+	MFS transporter	NA	NA	NA	NA	NA
AZX64626.1|1551201_1552152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64627.1|1552183_1553281_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX64628.1|1553277_1554228_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64629.1|1554649_1555042_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64630.1|1555047_1555824_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX64631.1|1556211_1558161_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX64632.1|1558181_1558727_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX64633.1|1558863_1559820_+	glutathione synthetase	NA	NA	NA	NA	NA
AZX64634.1|1559830_1560229_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX64635.1|1560344_1560614_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX64636.1|1560735_1562430_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX64637.1|1562594_1562819_-	hypothetical protein	NA	NA	NA	NA	NA
AZX64638.1|1563417_1564368_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX64639.1|1564409_1565570_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64640.1|1565730_1566651_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX64641.1|1566663_1567305_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX64642.1|1567301_1567973_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX64643.1|1567969_1568740_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX64644.1|1568838_1569789_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64645.1|1570005_1570410_-	GFA family protein	NA	NA	NA	NA	NA
AZX64646.1|1570483_1571674_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX64647.1|1571707_1572034_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX64648.1|1572056_1572572_-	transporter	NA	NA	NA	NA	NA
AZX64649.1|1572630_1573857_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX64650.1|1574034_1575165_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX64651.1|1575399_1575981_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX64652.1|1576117_1577182_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX64653.1|1577266_1577713_-	GFA family protein	NA	NA	NA	NA	NA
AZX64654.1|1577937_1578819_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX64655.1|1578873_1579125_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX64656.1|1579127_1579529_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX64657.1|1579548_1579785_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64658.1|1579792_1580272_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX64659.1|1580457_1580937_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX64660.1|1580939_1582130_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX64661.1|1582134_1583187_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX64662.1|1583323_1584346_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX64663.1|1584437_1585274_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64664.1|1585466_1586372_+	agmatinase	NA	NA	NA	NA	NA
AZX64665.1|1586398_1587190_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64666.1|1587212_1587905_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX64667.1|1587926_1588679_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX64668.1|1588807_1590367_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX64669.1|1590398_1590944_+	acyl dehydratase	NA	NA	NA	NA	NA
AZX64670.1|1591081_1592338_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX64671.1|1592354_1594049_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX64672.1|1594206_1595094_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX64673.1|1595131_1596064_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX66801.1|1596077_1596566_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX64674.1|1596683_1597262_+|protease	protease	protease	NA	NA	NA	NA
AZX64675.1|1597334_1597736_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX64676.1|1597834_1598785_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	1700112	1763949	4102199	transposase	Brazilian_cedratvirus(25.0%)	53	NA	NA
AZX64754.1|1700112_1701063_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64755.1|1701121_1701895_+	oxidoreductase	NA	NA	NA	NA	NA
AZX64756.1|1701887_1703444_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX64757.1|1705716_1706319_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64758.1|1706558_1707260_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX64759.1|1707253_1708036_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX64760.1|1708220_1709171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64761.1|1709269_1710007_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX64762.1|1710196_1710955_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX64763.1|1711001_1711991_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64764.1|1712168_1713137_-	transporter	NA	NA	NA	NA	NA
AZX64765.1|1714676_1715645_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX64766.1|1715653_1716595_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX64767.1|1717068_1718079_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66807.1|1718069_1719584_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX64768.1|1719580_1720927_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66808.1|1720929_1721964_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX64769.1|1722013_1723639_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX64770.1|1724191_1725142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64771.1|1725246_1726194_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66809.1|1726247_1728062_-	histidine kinase	NA	NA	NA	NA	NA
AZX64772.1|1728054_1728729_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX64773.1|1728858_1731933_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX64774.1|1731946_1732246_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX66810.1|1732560_1733184_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX64775.1|1733427_1734297_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX64776.1|1734274_1735219_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66811.1|1735304_1736276_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX66812.1|1736343_1737117_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX64777.1|1737113_1738310_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX64778.1|1738340_1739291_-	hydrolase	NA	NA	NA	NA	NA
AZX64779.1|1739512_1740202_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX64780.1|1740266_1741022_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX64781.1|1741073_1742066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64782.1|1742075_1743029_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64783.1|1743144_1744107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64784.1|1745508_1745937_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64785.1|1745933_1746884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66813.1|1747177_1747900_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX64786.1|1748338_1749526_-	MFS transporter	NA	NA	NA	NA	NA
AZX64787.1|1749529_1749910_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64788.1|1751629_1752601_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64789.1|1752614_1753328_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX64790.1|1753332_1754250_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX64791.1|1754356_1754653_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64792.1|1754751_1755702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64793.1|1756860_1759794_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX64794.1|1759793_1760138_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX64795.1|1760134_1761763_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX64796.1|1761759_1762239_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX64797.1|1762235_1762520_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX64798.1|1762516_1762843_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZX64799.1|1762998_1763949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	1988463	2058115	4102199	tRNA,transposase	Staphylococcus_phage(16.67%)	56	NA	NA
AZX64967.1|1988463_1991121_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX64968.1|1991198_1992401_-	MFS transporter	NA	NA	NA	NA	NA
AZX64969.1|1992397_1992910_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66821.1|1993032_1993371_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX64970.1|1993746_1994697_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64971.1|1994795_1995746_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64972.1|1995909_1997805_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX64973.1|1997918_1998086_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX64974.1|1998149_1998386_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX64975.1|1998754_1999954_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX64976.1|2001469_2002420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX64977.1|2002871_2003873_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64978.1|2004045_2004903_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX64979.1|2004899_2006162_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX64980.1|2006262_2006637_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX64981.1|2006685_2007897_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX64982.1|2007981_2008752_+	spermidine synthase	NA	NA	NA	NA	NA
AZX64983.1|2008865_2009630_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66822.1|2009745_2010882_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX64984.1|2010878_2011685_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX64985.1|2013429_2014401_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX64986.1|2014557_2015070_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX64987.1|2015228_2016203_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX64988.1|2017203_2017998_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX66823.1|2018023_2018830_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX64989.1|2018940_2019531_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX64990.1|2019541_2020720_+	hypothetical protein	NA	NA	NA	NA	NA
AZX64991.1|2020822_2021197_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX64992.1|2021449_2022781_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX64993.1|2022847_2026078_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX64994.1|2027568_2028315_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX64995.1|2028399_2028861_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX64996.1|2028898_2029957_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX64997.1|2029919_2031749_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX64998.1|2031788_2032361_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX64999.1|2033785_2034697_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX65000.1|2034925_2036248_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX65001.1|2036607_2037243_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65002.1|2037202_2038153_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65003.1|2039023_2039896_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX65004.1|2039973_2041113_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65005.1|2041462_2042728_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX65006.1|2042733_2043261_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX65007.1|2043265_2044084_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX65008.1|2044083_2044806_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX65009.1|2044827_2045142_+	ferredoxin	NA	NA	NA	NA	NA
AZX65010.1|2045138_2046308_+	CoA transferase	NA	NA	NA	NA	NA
AZX65011.1|2046338_2047214_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX65012.1|2047210_2048530_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX65013.1|2048602_2049799_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX65014.1|2049809_2051297_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65015.1|2053891_2054791_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65016.1|2054928_2055894_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX65017.1|2055992_2056943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65018.1|2056986_2057178_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65019.1|2057164_2058115_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	2069611	2119006	4102199	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZX65031.1|2069611_2070562_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65032.1|2071699_2071996_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65033.1|2072170_2073523_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX65034.1|2073665_2074682_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX66825.1|2076661_2077675_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX65035.1|2077761_2078667_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65036.1|2078823_2079168_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65037.1|2079325_2079784_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX65038.1|2079797_2082014_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX65039.1|2082010_2083072_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65040.1|2083100_2084075_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX65041.1|2084026_2084845_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX65042.1|2084857_2085466_-	peptidase S16	NA	NA	NA	NA	NA
AZX65043.1|2085640_2086036_+	VOC family protein	NA	NA	NA	NA	NA
AZX65044.1|2086054_2087494_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX65045.1|2087522_2087870_+	GFA family protein	NA	NA	NA	NA	NA
AZX65046.1|2087888_2088839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65047.1|2089491_2090442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65048.1|2090525_2092343_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX65049.1|2092416_2093064_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65050.1|2093076_2094006_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX65051.1|2094175_2094640_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65052.1|2094887_2095568_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65053.1|2095616_2097308_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX65054.1|2097323_2097875_-	ATPase	NA	NA	NA	NA	NA
AZX65055.1|2097871_2098243_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX65056.1|2098355_2099192_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX65057.1|2099202_2099727_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX65058.1|2099824_2100004_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX65059.1|2100133_2101165_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX65060.1|2101238_2101595_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX66826.1|2101584_2102460_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX65061.1|2102558_2103443_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65062.1|2103464_2104760_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX65063.1|2105708_2106359_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX66827.1|2106446_2107967_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX65064.1|2108224_2110090_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX65065.1|2111134_2112085_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65066.1|2113057_2113417_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX65067.1|2113404_2114841_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX65068.1|2114837_2115491_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX65069.1|2115487_2116687_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX65070.1|2116784_2118059_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX65071.1|2118055_2119006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	2130210	2263184	4102199	tRNA,protease,transposase	Klosneuvirus(12.5%)	113	NA	NA
AZX65085.1|2130210_2131161_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65086.1|2131120_2131534_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX65087.1|2131818_2132118_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66829.1|2132527_2134696_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX65088.1|2135495_2137526_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX65089.1|2137545_2137758_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX65090.1|2138035_2138575_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX65091.1|2138688_2139996_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX65092.1|2140060_2141218_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX65093.1|2141401_2142301_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX65094.1|2142319_2143624_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX65095.1|2143589_2144696_-	GTPase HflX	NA	NA	NA	NA	NA
AZX65096.1|2144783_2145020_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX65097.1|2145158_2146229_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX65098.1|2146232_2147588_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX65099.1|2147614_2148775_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX65100.1|2148777_2149416_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65101.1|2149417_2150722_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX65102.1|2150762_2152058_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX65103.1|2152064_2152571_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX65104.1|2152567_2153716_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX65105.1|2153743_2154169_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX65106.1|2154491_2157374_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX65107.1|2157466_2158222_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX65108.1|2158987_2160337_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX65109.1|2160435_2161386_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65110.1|2161484_2162435_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65111.1|2162508_2162982_+	RidA family protein	NA	NA	NA	NA	NA
AZX65112.1|2163007_2164216_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX65113.1|2164212_2164986_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX65114.1|2164985_2165609_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX65115.1|2165774_2166035_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX65116.1|2166338_2166920_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65117.1|2166986_2167241_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX65118.1|2167227_2169852_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX65119.1|2169923_2170742_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65120.1|2170738_2171344_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZX65121.1|2171381_2172515_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZX66830.1|2174230_2174605_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65122.1|2174702_2175977_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65123.1|2175980_2177558_-	lipoprotein	NA	NA	NA	NA	NA
AZX65124.1|2178464_2179820_-	amidase	NA	NA	NA	NA	NA
AZX65125.1|2179816_2181451_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZX65126.1|2181443_2182274_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX65127.1|2182291_2183236_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX65128.1|2183288_2184863_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65129.1|2184910_2185261_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65130.1|2186733_2187690_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65131.1|2187839_2189177_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65132.1|2189181_2190438_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX65133.1|2190633_2191680_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZX65134.1|2191737_2192106_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZX65135.1|2192236_2193109_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX65136.1|2193185_2194088_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65137.1|2195144_2196362_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZX65138.1|2197635_2198586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65139.1|2198786_2199596_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX65140.1|2199720_2200671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65141.1|2200667_2201561_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX65142.1|2201685_2201880_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX65143.1|2201879_2202221_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX65144.1|2202230_2204093_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX65145.1|2204222_2204735_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX65146.1|2204737_2205061_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX65147.1|2205062_2205473_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX65148.1|2205510_2206722_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX65149.1|2206739_2207252_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX65150.1|2207467_2207959_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX65151.1|2208211_2210248_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX65152.1|2210325_2211528_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX65153.1|2211578_2212307_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX65154.1|2213864_2214815_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65155.1|2215385_2215598_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65156.1|2215615_2216347_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65157.1|2216381_2217023_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX65158.1|2217015_2217732_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX65159.1|2219896_2220673_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX65160.1|2220694_2221852_-	thiolase	NA	NA	NA	NA	NA
AZX65161.1|2221848_2222280_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65162.1|2222276_2223080_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX65163.1|2223093_2223549_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX65164.1|2223561_2224533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX65165.1|2224598_2225822_-	CoA transferase	NA	NA	NA	NA	NA
AZX65166.1|2226049_2227000_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65167.1|2227123_2229577_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX65168.1|2229765_2231070_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX65169.1|2231174_2231828_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX65170.1|2231830_2233141_-	trigger factor	NA	NA	NA	NA	NA
AZX65171.1|2233319_2233898_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX65172.1|2234009_2234210_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX65173.1|2234555_2235122_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX65174.1|2235205_2235409_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX65175.1|2235715_2236036_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65176.1|2236077_2236359_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65177.1|2236433_2237690_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX65178.1|2238072_2238402_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX65179.1|2239972_2240794_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX65180.1|2240793_2241933_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX65181.1|2241939_2242836_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX65182.1|2242832_2244758_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX65183.1|2245117_2247730_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX65184.1|2247782_2250083_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX65185.1|2250079_2251288_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX65186.1|2251549_2251924_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65187.1|2251920_2252871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65188.1|2252969_2254964_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX65189.1|2255023_2255989_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX65190.1|2255978_2258840_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX65191.1|2258842_2259349_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX65192.1|2259453_2260662_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX65193.1|2260663_2261602_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65194.1|2261763_2262237_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX65195.1|2262233_2263184_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	2684924	2725593	4102199	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
AZX65550.1|2684924_2685875_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65551.1|2685985_2686168_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65552.1|2686267_2686864_-	lipoprotein	NA	NA	NA	NA	NA
AZX65553.1|2687047_2688139_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65554.1|2688638_2689049_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65555.1|2689107_2689449_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX65556.1|2689454_2691872_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX65557.1|2691884_2692907_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX65558.1|2692981_2693341_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX65559.1|2693356_2693554_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX65560.1|2693889_2694840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65561.1|2694826_2695015_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65562.1|2695034_2695484_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX65563.1|2695480_2696431_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65564.1|2696541_2697990_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX65565.1|2698104_2698386_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65566.1|2698489_2699440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65567.1|2699684_2700398_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX65568.1|2700520_2700748_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX65569.1|2701042_2701681_-	DedA family protein	NA	NA	NA	NA	NA
AZX65570.1|2701753_2702824_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX65571.1|2702820_2703771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65572.1|2704186_2704711_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX65573.1|2704714_2704984_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65574.1|2705182_2706244_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX65575.1|2706327_2707962_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX65576.1|2707963_2708767_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX65577.1|2708795_2709755_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX65578.1|2709758_2711273_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65579.1|2711309_2712314_-	peptidase M20	NA	NA	NA	NA	NA
AZX65580.1|2712745_2713216_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX65581.1|2713251_2713863_-	LysE family translocator	NA	NA	NA	NA	NA
AZX65582.1|2713893_2714517_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX65583.1|2714597_2716130_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX65584.1|2716164_2717406_-	MFS transporter	NA	NA	NA	NA	NA
AZX65585.1|2717449_2718481_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX65586.1|2718477_2719647_-	amine oxidase	NA	NA	NA	NA	NA
AZX65587.1|2719640_2720321_-	anti-sigma factor	NA	NA	NA	NA	NA
AZX65588.1|2720482_2721325_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65589.1|2721487_2722459_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX65590.1|2722630_2723509_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX65591.1|2723531_2724602_-	FUSC family protein	NA	NA	NA	NA	NA
AZX65592.1|2724642_2725593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	2781058	2853928	4102199	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZX65636.1|2781058_2781475_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX65637.1|2781585_2782218_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX65638.1|2782246_2782690_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX65639.1|2782711_2783803_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65640.1|2783857_2784658_-	aldolase	NA	NA	NA	NA	NA
AZX65641.1|2784793_2785414_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX65642.1|2785553_2786027_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65643.1|2787166_2788117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65644.1|2788113_2795775_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX65645.1|2796015_2800062_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX65646.1|2800374_2800956_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX65647.1|2800952_2802251_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX65648.1|2802330_2803359_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX65649.1|2803282_2803633_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65650.1|2803619_2804570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65651.1|2804566_2805517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65652.1|2805833_2806439_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX65653.1|2806492_2807806_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX65654.1|2807880_2808351_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX65655.1|2808350_2809139_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX65656.1|2809149_2810802_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX65657.1|2810889_2811840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66854.1|2813001_2813508_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX65658.1|2813504_2814269_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX65659.1|2814284_2814569_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX65660.1|2814633_2815623_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX65661.1|2815794_2816724_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX65662.1|2816695_2817382_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX65663.1|2817415_2817961_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX65664.1|2818005_2819271_+	peptidase M48	NA	NA	NA	NA	NA
AZX65665.1|2819267_2820170_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX65666.1|2821351_2822296_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX65667.1|2822390_2823908_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65668.1|2823949_2825578_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX65669.1|2825685_2826567_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65670.1|2829679_2830054_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX65671.1|2830078_2830417_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX65672.1|2830460_2832095_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX65673.1|2832133_2833480_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX66855.1|2833587_2835009_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX65674.1|2835078_2835663_-	nitroreductase	NA	NA	NA	NA	NA
AZX65675.1|2835765_2836716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65676.1|2836850_2837957_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65677.1|2837967_2839065_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX65678.1|2839209_2840415_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX65679.1|2840421_2840943_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX65680.1|2840939_2841431_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX65681.1|2841427_2841679_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX65682.1|2841659_2842145_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX65683.1|2842280_2845742_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65684.1|2845738_2846644_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX65685.1|2846653_2847085_-	lipoprotein	NA	NA	NA	NA	NA
AZX66856.1|2847331_2847835_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX65686.1|2847846_2849313_+	MFS transporter	NA	NA	NA	NA	NA
AZX65687.1|2849387_2850263_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66857.1|2850259_2851267_-	biotin synthase	NA	NA	NA	NA	NA
AZX65688.1|2851734_2852040_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX65689.1|2852130_2852721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65690.1|2852911_2853928_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	2857071	2923882	4102199	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZX65693.1|2857071_2858022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65694.1|2858120_2859071_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65695.1|2859067_2859862_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX65696.1|2859893_2860598_-	oxidoreductase	NA	NA	NA	NA	NA
AZX65697.1|2860672_2861473_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX65698.1|2861469_2861877_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX65699.1|2861873_2862515_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX65700.1|2862507_2864529_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX65701.1|2865768_2867100_+	MFS transporter	NA	NA	NA	NA	NA
AZX65702.1|2867096_2868047_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65703.1|2869753_2870059_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65704.1|2870727_2871066_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX65705.1|2875619_2876222_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX65706.1|2876318_2877608_+	MFS transporter	NA	NA	NA	NA	NA
AZX65707.1|2877665_2878397_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX65708.1|2878393_2879197_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX65709.1|2879193_2880282_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX65710.1|2880278_2881208_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX65711.1|2881356_2882502_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65712.1|2882523_2883474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65713.1|2883804_2887626_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX65714.1|2887782_2888451_-	lipoprotein	NA	NA	NA	NA	NA
AZX65715.1|2888455_2890129_-	MCE family protein	NA	NA	NA	NA	NA
AZX65716.1|2890147_2891467_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX65717.1|2891471_2893823_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX66858.1|2893842_2896011_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX65718.1|2896007_2901197_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX65719.1|2901286_2901601_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX65720.1|2901828_2902074_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX65721.1|2902168_2902687_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX65722.1|2902786_2903992_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX65723.1|2904107_2905505_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX65724.1|2905621_2906200_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX65725.1|2906272_2907664_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX65726.1|2907831_2908782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65727.1|2909062_2909683_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX65728.1|2909679_2910093_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX65729.1|2910089_2911133_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX65730.1|2911188_2911377_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65731.1|2911386_2912151_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX65732.1|2912241_2912898_+	adenylate kinase	NA	NA	NA	NA	NA
AZX65733.1|2912989_2913748_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX65734.1|2913773_2915375_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX65735.1|2915575_2916580_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX65736.1|2916680_2916944_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX65737.1|2917061_2917838_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX65738.1|2918428_2919379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65739.1|2921762_2922875_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX65740.1|2922931_2923882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	2954268	2990543	4102199	transposase	Planktothrix_phage(50.0%)	35	NA	NA
AZX65769.1|2954268_2955219_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65770.1|2955205_2955451_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65771.1|2955339_2956236_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX65772.1|2958513_2960739_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX65773.1|2960903_2961992_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX65774.1|2961948_2962602_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX65775.1|2962649_2963447_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65776.1|2963978_2964929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65777.1|2965009_2966158_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX65778.1|2966214_2967165_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65779.1|2967151_2967370_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65780.1|2967263_2967569_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX65781.1|2967597_2968032_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX65782.1|2968033_2969278_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX65783.1|2969274_2969985_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66860.1|2969999_2970911_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX65784.1|2971273_2971678_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65785.1|2971674_2972133_+	hypothetical protein	NA	NA	NA	NA	NA
AZX65786.1|2972139_2973048_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66861.1|2973044_2973911_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX65787.1|2973897_2974725_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX65788.1|2974735_2975863_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX65789.1|2976940_2978179_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65790.1|2978220_2979483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX65791.1|2979489_2980242_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX65792.1|2980293_2980479_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66862.1|2980754_2981219_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX65793.1|2981250_2981910_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX65794.1|2982054_2984163_+	AsmA family protein	NA	NA	NA	NA	NA
AZX65795.1|2984159_2985110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65796.1|2985213_2985834_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66863.1|2985937_2986678_+	oxidoreductase	NA	NA	NA	NA	NA
AZX65797.1|2987812_2988937_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65798.1|2988982_2989351_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65799.1|2989592_2990543_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	3231468	3278037	4102199	holin,transposase	Erwinia_phage(10.0%)	45	NA	NA
AZX65987.1|3231468_3232419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65988.1|3232863_3233175_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX65989.1|3233174_3233705_-	hypothetical protein	NA	NA	NA	NA	NA
AZX65990.1|3233867_3234818_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65991.1|3235107_3235572_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX65992.1|3235586_3237092_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX65993.1|3237345_3238953_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX65994.1|3239008_3239914_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX65995.1|3240354_3241305_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX65996.1|3241386_3241968_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX66881.1|3242392_3242698_+	RND transporter	NA	NA	NA	NA	NA
AZX65997.1|3242711_3244046_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX65998.1|3244067_3244607_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX65999.1|3244754_3245219_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX66000.1|3245361_3246477_-	GTP-binding protein	NA	NA	NA	NA	NA
AZX66001.1|3246753_3247257_-	transcriptional repressor	NA	NA	NA	NA	NA
AZX66002.1|3247394_3247595_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66003.1|3247585_3248308_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX66004.1|3248304_3249201_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX66005.1|3249197_3250133_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX66882.1|3250138_3250762_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX66006.1|3250752_3251721_+	nickel transporter	NA	NA	NA	NA	NA
AZX66007.1|3251769_3253911_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX66008.1|3253923_3254904_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX66009.1|3254918_3255611_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX66010.1|3255637_3256549_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX66011.1|3256591_3257482_-	acyltransferase	NA	NA	NA	NA	NA
AZX66012.1|3257478_3258333_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX66013.1|3258481_3259780_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX66014.1|3259890_3260142_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX66015.1|3260221_3261262_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX66016.1|3261541_3262960_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX66017.1|3263030_3263366_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX66018.1|3263365_3264208_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX66019.1|3264306_3265257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66020.1|3265321_3266293_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66021.1|3266356_3267376_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZX66883.1|3267377_3268751_-	MFS transporter	NA	NA	NA	NA	NA
AZX66022.1|3269028_3269709_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZX66023.1|3269721_3271848_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZX66024.1|3271844_3272939_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZX66025.1|3272953_3274213_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX66026.1|3274232_3275957_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZX66027.1|3276195_3276948_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZX66028.1|3277086_3278037_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	3287964	3327964	4102199	tRNA,protease,integrase,transposase	Mycobacterium_phage(50.0%)	28	3310760:3310778	3330648:3330666
AZX66036.1|3287964_3288915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66037.1|3288901_3289099_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66038.1|3289442_3290216_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX66039.1|3290348_3291359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX66040.1|3291510_3293166_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX66041.1|3293220_3293562_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX66042.1|3293575_3295015_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX66043.1|3295147_3295963_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66044.1|3295981_3296170_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66045.1|3298493_3299441_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66046.1|3299667_3300408_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66047.1|3300493_3301444_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66048.1|3302885_3304457_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX66049.1|3304789_3306643_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66050.1|3306687_3309252_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX66051.1|3309670_3310621_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3310760:3310778	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX66052.1|3313486_3313981_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX66053.1|3313997_3314948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66054.1|3314934_3315135_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66055.1|3315131_3316343_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX66056.1|3316358_3319310_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX66057.1|3319311_3322431_-	restriction endonuclease	NA	NA	NA	NA	NA
AZX66887.1|3322427_3322568_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX66058.1|3322578_3323625_-	Fic family protein	NA	NA	NA	NA	NA
AZX66059.1|3323966_3325094_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX66060.1|3325373_3326465_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX66061.1|3326537_3327320_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX66062.1|3327316_3327964_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3330648:3330666	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 23
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	3396712	3441784	4102199	tRNA,transposase	Staphylococcus_phage(20.0%)	38	NA	NA
AZX66115.1|3396712_3397663_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66116.1|3398429_3399524_-	CoA transferase	NA	NA	NA	NA	NA
AZX66117.1|3399516_3400851_-	CoA ligase	NA	NA	NA	NA	NA
AZX66118.1|3400804_3401488_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66119.1|3401513_3402677_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX66120.1|3402673_3403675_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX66121.1|3403674_3404547_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX66122.1|3404543_3405293_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX66123.1|3405289_3406081_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX66124.1|3406077_3407217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX66125.1|3407525_3408278_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX66126.1|3408311_3409094_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX66127.1|3409097_3409487_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX66128.1|3410626_3411490_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX66129.1|3411525_3412614_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66130.1|3412610_3413561_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66131.1|3413547_3413916_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66132.1|3413914_3416893_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66133.1|3417819_3418698_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX66134.1|3420646_3421597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66135.1|3421593_3422061_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX66136.1|3422103_3422874_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX66137.1|3422894_3423695_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX66138.1|3423705_3425115_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX66139.1|3425209_3425995_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX66140.1|3426234_3427251_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX66141.1|3427358_3427751_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX66142.1|3427888_3428569_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX66143.1|3428573_3429572_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX66144.1|3429640_3430591_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66145.1|3432095_3432797_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX66146.1|3432796_3434221_+	ATP-binding protein	NA	NA	NA	NA	NA
AZX66147.1|3435290_3436631_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX66148.1|3436746_3438510_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX66149.1|3438621_3439500_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX66150.1|3439612_3440428_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX66151.1|3440431_3440683_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX66152.1|3440767_3441784_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 24
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	3459528	3511935	4102199	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
AZX66163.1|3459528_3460545_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX66164.1|3460640_3461351_-	oxidoreductase	NA	NA	NA	NA	NA
AZX66891.1|3461347_3462337_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX66165.1|3462468_3464064_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX66166.1|3464066_3464804_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66167.1|3464959_3465832_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX66168.1|3466100_3467321_+	MFS transporter	NA	NA	NA	NA	NA
AZX66169.1|3467317_3467977_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX66170.1|3468048_3468681_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX66171.1|3468710_3469229_+	flavin reductase	NA	NA	NA	NA	NA
AZX66172.1|3469239_3470349_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX66173.1|3470395_3471250_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX66174.1|3471251_3472154_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66175.1|3473376_3474327_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66176.1|3476083_3477073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66177.1|3477248_3478037_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX66178.1|3478033_3479065_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX66179.1|3479083_3479647_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX66180.1|3479702_3481223_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX66181.1|3481486_3482191_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX66182.1|3482198_3482936_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX66183.1|3483041_3483416_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX66184.1|3483458_3484748_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66185.1|3484744_3485914_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX66186.1|3485910_3486750_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX66187.1|3486809_3487745_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX66188.1|3487757_3488708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66189.1|3488806_3489769_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX66190.1|3489800_3490160_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX66191.1|3490284_3491187_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX66192.1|3491188_3492961_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX66193.1|3492995_3493772_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX66194.1|3495095_3496046_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66892.1|3496897_3497218_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX66195.1|3497290_3498172_+	ATP synthase subunit A	NA	NA	NA	NA	NA
AZX66196.1|3498288_3498531_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZX66197.1|3498668_3499139_+	ATP synthase subunit B	NA	NA	NA	NA	NA
AZX66198.1|3499151_3499691_+	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZX66199.1|3499725_3501267_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZX66200.1|3501365_3502271_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZX66201.1|3502313_3503714_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZX66202.1|3503723_3504146_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZX66893.1|3504328_3505213_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66203.1|3505288_3506365_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZX66204.1|3506671_3508774_+	primosomal protein N'	NA	NA	NA	NA	NA
AZX66205.1|3508816_3510886_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZX66206.1|3510984_3511935_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025370	Bordetella pertussis strain I120 chromosome, complete genome	4102199	3529053	3585328	4102199	tRNA,transposase	Catovirus(11.11%)	47	NA	NA
AZX66220.1|3529053_3530004_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66221.1|3530344_3531295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66222.1|3531393_3532344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66223.1|3532640_3533138_+	hypothetical protein	NA	NA	NA	NA	NA
AZX66224.1|3533180_3534956_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX66894.1|3535002_3535830_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX66225.1|3535836_3536571_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX66226.1|3537740_3538535_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX66227.1|3538824_3539415_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX66228.1|3539448_3540777_-	amidase	NA	NA	NA	NA	NA
AZX66229.1|3540851_3541997_-	transporter	NA	NA	NA	NA	NA
AZX66230.1|3542108_3543107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66231.1|3543069_3543504_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX66232.1|3545020_3545905_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX66233.1|3545901_3547107_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX66234.1|3547103_3547964_-	endonuclease	NA	NA	NA	NA	NA
AZX66235.1|3548076_3549867_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX66236.1|3549907_3550573_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX66237.1|3550573_3550882_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX66895.1|3551047_3552334_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66238.1|3553767_3554718_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66239.1|3556669_3557884_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX66240.1|3557989_3558979_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX66241.1|3558975_3559584_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX66242.1|3559596_3560226_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX66243.1|3560222_3560843_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX66244.1|3560874_3561666_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX66245.1|3562508_3562973_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX66246.1|3562991_3563918_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX66247.1|3563971_3565258_-	cytochrome c	NA	NA	NA	NA	NA
AZX66248.1|3566188_3567061_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX66249.1|3567057_3568008_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX66250.1|3568106_3569057_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66896.1|3569161_3569392_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66251.1|3569518_3569908_-	hypothetical protein	NA	NA	NA	NA	NA
AZX66252.1|3569924_3572306_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX66253.1|3572298_3573675_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX66254.1|3573690_3574686_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX66255.1|3574704_3575697_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX66256.1|3575937_3576498_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX66257.1|3576502_3576829_-	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX66258.1|3576865_3577678_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX66259.1|3577688_3578771_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX66260.1|3578857_3580132_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX66261.1|3580854_3581805_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66262.1|3581903_3582854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX66263.1|3582952_3585328_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
