The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	0	65104	4112103	tRNA,transposase,protease	Natrialba_phage(12.5%)	56	NA	NA
AZX48976.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX48977.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX48978.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX48979.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX48980.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX48981.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX48982.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX48983.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX48984.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX48985.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX48986.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX48987.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX48988.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX48989.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX52339.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX48990.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48991.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX48992.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX48993.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48994.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX48995.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48996.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX48997.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX52340.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48998.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX48999.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX49000.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49001.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49002.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
AZX49003.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX49004.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX49005.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX49006.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX49007.1|42367_43261_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX49008.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX49009.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX49010.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX49011.1|44712_45663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49012.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49013.1|46769_47006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX49014.1|47133_48027_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49015.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX49016.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX49017.1|51190_52141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49018.1|52183_53440_+	MFS transporter	NA	NA	NA	NA	NA
AZX49019.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX49020.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX49021.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX49022.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX49023.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX49024.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49025.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX49026.1|61523_61943_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX49027.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49028.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49029.1|64522_65104_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	70134	123121	4112103	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
AZX49034.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49035.1|71178_71493_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX49036.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX49037.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX49038.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX49039.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52341.1|76329_77079_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49040.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX49041.1|78683_79634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52342.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49042.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX49043.1|83871_84576_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX49044.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX49045.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
AZX49046.1|86530_87763_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX49047.1|87780_89040_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX49048.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX49049.1|90159_91260_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX49050.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX49051.1|91842_92895_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX49052.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX49053.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX49054.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49055.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX49056.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX49057.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX49058.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX49059.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49060.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX49061.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX49062.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX49063.1|103857_104133_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX49064.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX49065.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX49066.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX49067.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX49068.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX49069.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49070.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX49071.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX49072.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX49073.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX52343.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX49074.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52344.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX49075.1|117084_117885_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX49076.1|117881_118757_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX49077.1|118767_120060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX49078.1|120102_121143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX49079.1|121248_122070_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX49080.1|122170_123121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	165938	290028	4112103	transposase,protease,tRNA	Klosneuvirus(11.76%)	107	NA	NA
AZX49112.1|165938_166889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49113.1|168332_169235_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49114.1|169212_169842_-	LemA family protein	NA	NA	NA	NA	NA
AZX49115.1|170172_171555_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX49116.1|171588_172218_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX49117.1|172266_173874_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX49118.1|173898_174582_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52349.1|174663_175140_-	bacterioferritin	NA	NA	NA	NA	NA
AZX49119.1|175346_176297_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49120.1|177412_177940_+	lipoprotein	NA	NA	NA	NA	NA
AZX49121.1|178031_178847_+	lipoprotein	NA	NA	NA	NA	NA
AZX49122.1|178907_179642_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX49123.1|179679_181758_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX49124.1|182007_182280_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49125.1|182378_183467_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX49126.1|183470_185375_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX49127.1|185371_189010_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX49128.1|189070_189634_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX49129.1|189641_190064_-	glyoxalase	NA	NA	NA	NA	NA
AZX49130.1|190091_190511_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX52350.1|190539_190986_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX49131.1|191112_191610_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49132.1|191764_194035_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX49133.1|194083_195316_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX49134.1|196411_197104_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX49135.1|197100_197994_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX49136.1|198388_199489_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX49137.1|199570_199945_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX49138.1|200004_202869_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX49139.1|203013_203754_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49140.1|203823_205035_+	CoA transferase	NA	NA	NA	NA	NA
AZX49141.1|205063_206032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49142.1|206645_207596_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49143.1|207752_208076_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX49144.1|208180_209230_-	cyclase	NA	NA	NA	NA	NA
AZX49145.1|209226_210051_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX49146.1|210051_210348_-	YciI family protein	NA	NA	NA	NA	NA
AZX49147.1|210373_210649_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX49148.1|210705_211350_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX49149.1|211349_212036_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX52351.1|212165_213017_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49150.1|213067_213793_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX49151.1|213824_215174_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX49152.1|215285_216218_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX49153.1|216675_219471_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX49154.1|220064_223007_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX49155.1|223078_223798_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX49156.1|223836_224385_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX49157.1|224539_225439_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX49158.1|225463_226414_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49159.1|226400_226580_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49160.1|226632_227328_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49161.1|227344_228757_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX49162.1|228869_230300_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX49163.1|230341_232255_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZX49164.1|232573_233140_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZX49165.1|233230_234232_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZX49166.1|234346_235297_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49167.1|235383_236334_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49168.1|236330_237281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49169.1|237379_238177_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX49170.1|239126_239537_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX49171.1|240558_241302_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49172.1|241345_242389_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX49173.1|242559_244662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49174.1|246072_247029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49175.1|247047_247539_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX49176.1|247535_248891_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX49177.1|248891_249590_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX49178.1|249586_250288_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX49179.1|250540_251590_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX49180.1|251695_252637_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX49181.1|252633_254523_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	33.1	1.3e-78
AZX49182.1|254609_255248_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52352.1|255390_256635_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX49183.1|256706_257243_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX49184.1|257394_258786_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX49185.1|258802_259783_-	AEC family transporter	NA	NA	NA	NA	NA
AZX49186.1|259918_260902_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX49187.1|260966_261866_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49188.1|261972_263727_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX49189.1|263734_264859_-	CoA transferase	NA	NA	NA	NA	NA
AZX49190.1|264872_265850_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49191.1|266580_267531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49192.1|268090_268636_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49193.1|268719_270339_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX49194.1|270354_271509_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX49195.1|271522_271648_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX49196.1|271644_273396_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX49197.1|273392_275072_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX49198.1|274992_275193_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49199.1|275179_276130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49200.1|276156_276732_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX49201.1|277874_278153_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX49202.1|279196_280147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49203.1|280133_280349_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49204.1|280424_280586_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX49205.1|280593_280734_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49206.1|281252_281702_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX49207.1|281711_282323_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX49208.1|282481_283336_-	cytochrome c1	NA	NA	NA	NA	NA
AZX49209.1|283485_284436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49210.1|285850_286492_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX49211.1|286631_287090_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX49212.1|287114_287891_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX52353.1|287944_289081_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX49213.1|289077_290028_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	393950	451459	4112103	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX49311.1|393950_394901_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49312.1|395037_395955_+	reductase	NA	NA	NA	NA	NA
AZX49313.1|395951_396200_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX49314.1|396196_397402_+	CoA transferase	NA	NA	NA	NA	NA
AZX49315.1|397474_398470_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49316.1|398492_399713_-	CoA transferase	NA	NA	NA	NA	NA
AZX49317.1|399709_400354_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49318.1|402084_402894_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52359.1|403111_404152_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX49319.1|404250_405234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49320.1|405160_405862_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49321.1|405910_406681_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX49322.1|406677_407919_-	CoA transferase	NA	NA	NA	NA	NA
AZX49323.1|408023_409730_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX49324.1|409726_410623_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49325.1|410663_412253_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX49326.1|412302_413295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49327.1|413363_413963_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52360.1|414423_415401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49328.1|415479_416430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49329.1|416518_417433_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX49330.1|417429_418089_+	LysE family translocator	NA	NA	NA	NA	NA
AZX49331.1|418178_419102_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX49332.1|419107_419563_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49333.1|419559_420663_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX52361.1|420582_420891_+	GtrA family protein	NA	NA	NA	NA	NA
AZX49334.1|420850_422470_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX49335.1|422466_423525_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX49336.1|423654_424149_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX49337.1|424241_425219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49338.1|425414_426620_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX49339.1|426616_428128_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX52362.1|428143_429457_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX49340.1|429647_429827_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49341.1|430236_430971_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX49342.1|433415_434366_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49343.1|434497_434896_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX49344.1|435306_435777_-	universal stress protein	NA	NA	NA	NA	NA
AZX49345.1|435865_436210_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX49346.1|436309_437710_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX49347.1|439498_440017_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX49348.1|440127_440883_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX49349.1|441078_442311_+	CoA transferase	NA	NA	NA	NA	NA
AZX49350.1|442303_443089_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX49351.1|443155_444127_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49352.1|444137_445115_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49353.1|445240_446413_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX49354.1|446439_447468_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX49355.1|447533_448727_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX49356.1|450508_451459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	623893	715163	4112103	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(14.29%)	98	NA	NA
AZX49508.1|623893_624844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49509.1|625542_625926_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49510.1|625983_626586_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX52368.1|626603_627005_-	DoxX family protein	NA	NA	NA	NA	NA
AZX49511.1|627138_628032_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49512.1|628028_628610_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX49513.1|629404_630139_+	arginyltransferase	NA	NA	NA	NA	NA
AZX49514.1|630179_631229_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX49515.1|631376_631955_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX49516.1|632341_633319_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX49517.1|633412_637807_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX49518.1|638007_638856_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49519.1|639014_639827_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX49520.1|639882_640833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49521.1|640931_641732_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49522.1|641793_642177_+	thioredoxin	NA	NA	NA	NA	NA
AZX49523.1|642188_643622_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX49524.1|643828_644158_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX52369.1|644160_644829_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX49525.1|645092_646013_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX49526.1|646059_646272_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX49527.1|646294_646717_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX49528.1|646733_647834_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX49529.1|647930_649448_-	peptidase	NA	NA	NA	NA	NA
AZX49530.1|649523_650363_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX49531.1|650384_651266_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX49532.1|651347_652442_-	porin	NA	NA	NA	NA	NA
AZX49533.1|652735_653686_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52370.1|653760_654702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49534.1|654785_655145_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49535.1|655526_656564_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49536.1|656880_658221_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX49537.1|658230_658683_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49538.1|658779_659961_+	monooxygenase	NA	NA	NA	NA	NA
AZX49539.1|660020_661052_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX49540.1|661092_661332_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX49541.1|661401_662991_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX49542.1|662990_663539_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX49543.1|663619_664192_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX49544.1|664210_665122_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX49545.1|665195_666164_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX49546.1|666286_667360_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX49547.1|667364_669185_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX49548.1|669261_670212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49549.1|670300_670636_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX49550.1|670769_671420_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX49551.1|671441_672860_-	amidase	NA	NA	NA	NA	NA
AZX49552.1|672929_673685_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52371.1|673653_674412_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX49553.1|674422_675304_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX49554.1|675320_676028_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX49555.1|676030_676789_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX49556.1|676998_678741_+	sulfite reductase	NA	NA	NA	NA	NA
AZX49557.1|678733_679258_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX49558.1|679297_680092_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX49559.1|680259_681333_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49560.1|681431_682382_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49561.1|682633_682846_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52372.1|682911_683523_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX49562.1|684002_684323_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49563.1|684315_685014_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49564.1|685028_685250_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49565.1|685267_686218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52373.1|686893_687343_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX49566.1|687329_688607_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX49567.1|688609_690028_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX52374.1|690056_691112_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX49568.1|691117_691360_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX49569.1|691482_692085_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX49570.1|693562_694513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49571.1|694530_695178_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX49572.1|695187_695439_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49573.1|695501_695984_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX49574.1|695985_696186_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49575.1|696185_696581_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX49576.1|696577_696976_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX49577.1|696972_697395_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49578.1|697402_697903_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX49579.1|698157_698676_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX49580.1|698685_699015_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX49581.1|699032_699323_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX49582.1|699348_701961_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX49583.1|701970_702330_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49584.1|702397_702931_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX49585.1|702927_703317_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX49586.1|703309_707266_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX49587.1|707270_707687_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49588.1|707905_708169_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX49589.1|708168_708981_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49590.1|708985_709228_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49591.1|709206_709758_+	lysozyme	NA	NA	NA	NA	NA
AZX49592.1|709739_710273_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX49593.1|710269_710551_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49594.1|710893_711094_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49595.1|711100_711772_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX49596.1|712127_712814_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX49597.1|712794_713367_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX49598.1|713432_715163_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 6
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	752330	825491	4112103	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZX49631.1|752330_753281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49632.1|753935_755033_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX49633.1|755066_756332_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX49634.1|756489_757440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49635.1|757683_758274_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX52376.1|758289_760734_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX49636.1|760853_761825_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49637.1|761956_762481_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX49638.1|762440_763391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49639.1|763612_765808_-	DNA methylase	NA	NA	NA	NA	NA
AZX49640.1|765880_766288_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX49641.1|766410_767361_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49642.1|767476_767920_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX49643.1|767982_768777_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX49644.1|768942_770079_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX49645.1|770149_771283_-	GTPase ObgE	NA	NA	NA	NA	NA
AZX49646.1|771432_771693_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX49647.1|771726_772038_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX49648.1|772462_773611_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX49649.1|773725_774691_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX49650.1|774959_775826_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49651.1|775956_778005_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX49652.1|778022_780020_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX49653.1|780054_781392_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX49654.1|781654_783508_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49655.1|783562_785044_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX49656.1|785059_785647_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX52377.1|785729_785909_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49657.1|786095_791216_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX49658.1|791293_793432_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX49659.1|793428_794751_+	protein CyaD	NA	NA	NA	NA	NA
AZX49660.1|794752_796177_+	protein CyaE	NA	NA	NA	NA	NA
AZX49661.1|796267_797176_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49662.1|797240_798155_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX49663.1|798992_799676_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX49664.1|799692_800436_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX49665.1|800465_801326_+	aminotransferase	NA	NA	NA	NA	NA
AZX49666.1|801333_801900_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49667.1|801988_802945_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49668.1|802989_803742_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX49669.1|803738_805484_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX49670.1|805568_806303_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49671.1|806619_807642_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX49672.1|807657_808380_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49673.1|808524_809532_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX49674.1|809572_811105_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX49675.1|811101_812220_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX49676.1|812216_812999_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX49677.1|813010_813874_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX52378.1|813892_814990_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49678.1|815058_815985_-	VOC family protein	NA	NA	NA	NA	NA
AZX49679.1|816019_817714_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX49680.1|817913_818849_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX49681.1|818954_819905_-|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AZX49682.1|820002_820659_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX49683.1|820806_823515_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX49684.1|823524_824544_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX49685.1|824540_825491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	858238	907502	4112103	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZX49714.1|858238_859189_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52379.1|859161_859761_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49715.1|859762_860197_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX49716.1|860193_860628_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49717.1|860611_861415_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX49718.1|861431_862247_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX49719.1|862243_863059_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX49720.1|863205_863907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49721.1|863934_865893_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX49722.1|865975_866926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49723.1|867146_867815_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX49724.1|867938_869045_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX49725.1|869057_872171_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX49726.1|872167_873661_+	RND transporter	NA	NA	NA	NA	NA
AZX49727.1|873675_874347_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX49728.1|874390_874885_-	azurin	NA	NA	NA	NA	NA
AZX49729.1|875025_875673_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX52380.1|875776_877825_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX49730.1|877821_879834_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX49731.1|879859_881194_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX49732.1|881302_882295_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49733.1|882361_884446_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX49734.1|884470_885442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49735.1|885570_886572_-	peptidase M14	NA	NA	NA	NA	NA
AZX49736.1|886605_887847_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX49737.1|887927_888851_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX49738.1|888928_889753_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX52381.1|889949_890966_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX49739.1|891162_892146_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49740.1|893744_895133_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX49741.1|895163_896153_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX49742.1|896263_897496_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX49743.1|897777_898578_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49744.1|898600_900832_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX49745.1|901619_902066_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX49746.1|902087_902834_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX49747.1|902977_903955_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX49748.1|904588_905200_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX49749.1|905193_906411_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX49750.1|906551_907502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	917114	983866	4112103	transposase	Bacillus_phage(28.57%)	56	NA	NA
AZX49759.1|917114_918065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49760.1|918061_919912_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX49761.1|920292_920952_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX49762.1|921039_921192_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49763.1|921300_921468_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49764.1|921479_922160_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX49765.1|922441_923158_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX49766.1|923172_924474_-	phospholipase	NA	NA	NA	NA	NA
AZX49767.1|929738_931091_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX49768.1|931119_931641_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX49769.1|931637_933092_+	carboxylase	NA	NA	NA	NA	NA
AZX49770.1|933126_933375_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49771.1|933480_934356_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49772.1|934381_935437_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49773.1|935449_936241_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49774.1|936273_937644_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX49775.1|938820_939771_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49776.1|939823_940045_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49777.1|940204_940417_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49778.1|940536_941655_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX49779.1|941751_941967_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49780.1|942160_942412_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49781.1|942523_943474_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49782.1|943470_943854_-	ferredoxin	NA	NA	NA	NA	NA
AZX49783.1|943908_945726_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX49784.1|945872_946700_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX49785.1|946745_947726_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX49786.1|947722_947935_-	hypothetical protein	NA	NA	NA	NA	NA
AZX49787.1|947931_949113_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX49788.1|949276_950011_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
AZX49789.1|950012_952625_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX49790.1|952760_954674_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX49791.1|955289_955700_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX49792.1|955797_956883_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX49793.1|956981_957932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49794.1|958034_958619_+	nitroreductase	NA	NA	NA	NA	NA
AZX52383.1|958688_960110_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX49795.1|960217_961564_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX49796.1|961602_963246_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.4	1.9e-86
AZX49797.1|963289_963628_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX49798.1|963652_964603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49799.1|964701_965076_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX49800.1|968188_969070_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX49801.1|969177_970806_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX49802.1|970847_972365_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX49803.1|972459_973404_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX49804.1|974585_975488_-	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX49805.1|975484_976750_-	peptidase M48	NA	NA	NA	NA	NA
AZX49806.1|976794_977340_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX49807.1|977373_978060_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX49808.1|978031_978961_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX49809.1|979132_980122_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX49810.1|980186_980471_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX49811.1|980486_981251_+	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX52384.1|981247_981754_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX49812.1|982915_983866_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
>prophage 9
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	1188456	1241636	4112103	transposase,tRNA	Salmonella_phage(22.22%)	46	NA	NA
AZX49983.1|1188456_1189407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49984.1|1189573_1189927_+	cytochrome C	NA	NA	NA	NA	NA
AZX49985.1|1189939_1190302_+	cytochrome	NA	NA	NA	NA	NA
AZX49986.1|1190343_1190769_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX49987.1|1190971_1192228_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX49988.1|1192426_1193407_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49989.1|1193556_1194798_+	hypothetical protein	NA	NA	NA	NA	NA
AZX49990.1|1194896_1195847_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49991.1|1195855_1196551_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX49992.1|1199372_1199972_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX49993.1|1199982_1202148_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX49994.1|1202171_1203956_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX49995.1|1203955_1204045_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX49996.1|1204739_1205012_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX49997.1|1205011_1207078_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX49998.1|1207074_1208025_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX49999.1|1208140_1208473_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX50000.1|1208469_1209156_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX50001.1|1209142_1210102_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX52394.1|1210143_1212504_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX50002.1|1212503_1213136_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX50003.1|1213198_1214578_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX50004.1|1214624_1215980_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX50005.1|1216258_1216507_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50006.1|1216694_1217012_-	virulence factor	NA	NA	NA	NA	NA
AZX50007.1|1217284_1217800_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX50008.1|1217893_1218055_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50009.1|1218070_1218826_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX50010.1|1219164_1219371_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50011.1|1219378_1220038_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX50012.1|1220332_1222537_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX50013.1|1222647_1223871_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX50014.1|1223993_1224968_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX50015.1|1225035_1226229_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX50016.1|1226243_1227044_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX50017.1|1227040_1228897_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX50018.1|1228893_1229499_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX50019.1|1229517_1230903_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX50020.1|1231628_1232855_+	transporter	NA	NA	NA	NA	NA
AZX50021.1|1232943_1233726_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX50022.1|1233824_1234775_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50023.1|1234801_1235575_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX50024.1|1235586_1236828_+	MFS transporter	NA	NA	NA	NA	NA
AZX50025.1|1238609_1239560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50026.1|1239591_1240689_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX50027.1|1240685_1241636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	1283485	1342349	4112103	tRNA,protease,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZX52395.1|1283485_1283974_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX50073.1|1284091_1284670_+|protease	protease	protease	NA	NA	NA	NA
AZX50074.1|1284742_1285144_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX50075.1|1285242_1286193_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50076.1|1286199_1287312_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX50077.1|1287998_1289201_+	MFS transporter	NA	NA	NA	NA	NA
AZX50078.1|1289404_1292065_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50079.1|1292077_1295482_+	nuclease	NA	NA	NA	NA	NA
AZX50080.1|1296149_1298375_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX50081.1|1298421_1298748_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX50082.1|1298798_1299407_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX50083.1|1299505_1300456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50084.1|1300525_1301290_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX50085.1|1301286_1301886_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52396.1|1301989_1302835_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX50086.1|1302900_1303527_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX50087.1|1303523_1304474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50088.1|1304460_1304649_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50089.1|1304572_1305694_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX50090.1|1305674_1306676_-	aminopeptidase	NA	NA	NA	NA	NA
AZX50091.1|1306781_1308293_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX50092.1|1308289_1309594_-	peptidase	NA	NA	NA	NA	NA
AZX50093.1|1309705_1310266_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX50094.1|1310533_1311088_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX50095.1|1311543_1311759_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX52397.1|1312013_1314611_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX50096.1|1314607_1315795_+	cupin	NA	NA	NA	NA	NA
AZX50097.1|1316454_1317069_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZX50098.1|1317157_1318285_-	lipoprotein	NA	NA	NA	NA	NA
AZX50099.1|1318296_1319202_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX50100.1|1320094_1321045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50101.1|1321226_1321979_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX50102.1|1322047_1322707_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX50103.1|1322703_1323432_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX50104.1|1323444_1325724_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX50105.1|1325748_1325952_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX50106.1|1325993_1326641_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX50107.1|1326761_1327679_-	cytochrome C	NA	NA	NA	NA	NA
AZX50108.1|1327675_1328389_-	cytochrome C	NA	NA	NA	NA	NA
AZX50109.1|1328626_1329397_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX50110.1|1329401_1330001_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX50111.1|1330245_1331736_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX50112.1|1331794_1332079_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX50113.1|1332075_1332204_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50114.1|1332216_1332372_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50115.1|1332644_1333571_-	YicC family protein	NA	NA	NA	NA	NA
AZX50116.1|1333707_1334448_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX50117.1|1334614_1335991_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX50118.1|1336172_1337078_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX50119.1|1337112_1338852_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX50120.1|1338729_1340532_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX50121.1|1340649_1341300_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX50122.1|1341398_1342349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	1387521	1443111	4112103	transposase	Brazilian_cedratvirus(25.0%)	46	NA	NA
AZX50153.1|1387521_1388472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50154.1|1388530_1389304_+	oxidoreductase	NA	NA	NA	NA	NA
AZX50155.1|1389296_1390853_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX50156.1|1390849_1391800_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50157.1|1393126_1393729_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50158.1|1393968_1394670_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX50159.1|1394663_1395446_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX50160.1|1395630_1396581_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50161.1|1396679_1397417_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX50162.1|1397606_1398365_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX50163.1|1398411_1399401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50164.1|1399578_1400547_-	transporter	NA	NA	NA	NA	NA
AZX50165.1|1402086_1403055_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX50166.1|1403063_1404005_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX50167.1|1404478_1405489_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52401.1|1405479_1406994_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX50168.1|1406990_1408337_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52402.1|1408339_1409374_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX50169.1|1409423_1411049_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX50170.1|1411601_1412552_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50171.1|1412656_1413604_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52403.1|1413657_1415472_-	histidine kinase	NA	NA	NA	NA	NA
AZX50172.1|1415464_1416139_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX50173.1|1416268_1419343_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX50174.1|1419356_1419656_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX52404.1|1419970_1420594_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX50175.1|1420837_1421707_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX50176.1|1421684_1422629_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52405.1|1422714_1423686_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX52406.1|1423753_1424527_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX50177.1|1424523_1425720_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX50178.1|1425750_1426701_-	hydrolase	NA	NA	NA	NA	NA
AZX50179.1|1426922_1427612_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX50180.1|1427676_1428432_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX50181.1|1428483_1429476_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50182.1|1429485_1430439_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52407.1|1430554_1431517_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50183.1|1432918_1433347_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50184.1|1433343_1434294_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52408.1|1434587_1435310_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX50185.1|1436938_1437319_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50186.1|1439038_1440010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50187.1|1440023_1440737_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX50188.1|1440741_1441659_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50189.1|1441765_1442062_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50190.1|1442160_1443111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	1450407	1513373	4112103	transposase,tRNA	Klosneuvirus(11.76%)	57	NA	NA
AZX50197.1|1450407_1451358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50198.1|1451401_1451944_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50199.1|1452041_1452890_+	hydrolase	NA	NA	NA	NA	NA
AZX50200.1|1452882_1453389_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX50201.1|1453385_1454387_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX50202.1|1454399_1455194_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX50203.1|1455242_1457144_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX50204.1|1457140_1457764_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50205.1|1457890_1459015_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX50206.1|1459332_1461000_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX50207.1|1461155_1461932_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX50208.1|1462016_1463015_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX50209.1|1463011_1463785_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX50210.1|1464769_1465720_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50211.1|1465757_1466345_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX50212.1|1466362_1466746_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX50213.1|1468105_1469398_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX50214.1|1469532_1470573_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX52409.1|1470670_1471687_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX50215.1|1471954_1472602_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX50216.1|1472727_1473486_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX52410.1|1473560_1474250_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX50217.1|1474267_1475152_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX50218.1|1475148_1475928_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX50219.1|1475954_1476632_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52411.1|1476920_1477673_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50220.1|1477791_1479192_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX50221.1|1479215_1479614_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX50222.1|1479789_1479990_+	copper chaperone	NA	NA	NA	NA	NA
AZX50223.1|1480128_1480857_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX50224.1|1480990_1482406_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX50225.1|1482409_1483273_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX50226.1|1483285_1484035_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX50227.1|1484217_1486233_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX52412.1|1486214_1486763_-	arylesterase	NA	NA	NA	NA	NA
AZX50228.1|1486839_1487559_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX50229.1|1487657_1488608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50230.1|1488756_1489095_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX50231.1|1489152_1489314_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX50232.1|1489345_1489546_-	CsbD family protein	NA	NA	NA	NA	NA
AZX50233.1|1489811_1492385_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX50234.1|1492455_1495029_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX50235.1|1497555_1498044_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX50236.1|1498135_1499287_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX50237.1|1499340_1500162_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX50238.1|1500200_1501430_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX50239.1|1501558_1501999_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX50240.1|1501943_1502123_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50241.1|1502109_1503060_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50242.1|1503056_1503530_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX50243.1|1503691_1504630_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50244.1|1504631_1505840_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX50245.1|1505944_1506451_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX50246.1|1506453_1509315_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX50247.1|1509304_1510270_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX50248.1|1510329_1512324_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX50249.1|1512422_1513373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	1533464	1568706	4112103	transposase,protease	Agrobacterium_phage(14.29%)	33	NA	NA
AZX50267.1|1533464_1534118_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX50268.1|1534222_1535527_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX50269.1|1535715_1538169_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX50270.1|1538292_1539243_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50271.1|1539470_1540694_+	CoA transferase	NA	NA	NA	NA	NA
AZX50272.1|1540759_1541731_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50273.1|1541743_1542199_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX50274.1|1542212_1543016_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX50275.1|1543012_1543444_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50276.1|1543440_1544598_+	thiolase	NA	NA	NA	NA	NA
AZX50277.1|1544619_1545396_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX50278.1|1547560_1548277_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX50279.1|1548269_1548911_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX50280.1|1548945_1549677_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50281.1|1549694_1549907_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50282.1|1550477_1551428_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50283.1|1552985_1553714_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX50284.1|1553764_1554967_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX50285.1|1555044_1557081_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZX50286.1|1557333_1557825_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX50287.1|1558040_1558553_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX50288.1|1558570_1559782_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX50289.1|1559819_1560230_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX50290.1|1560231_1560555_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX50291.1|1560557_1561070_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX50292.1|1561199_1563062_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX50293.1|1563071_1563413_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX50294.1|1563412_1563607_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX50295.1|1563731_1564625_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX50296.1|1564621_1565572_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50297.1|1565696_1566506_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX50298.1|1566706_1567657_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50299.1|1567755_1568706_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	1614570	1676355	4112103	tRNA,protease,transposase	Pacmanvirus(11.11%)	59	NA	NA
AZX50335.1|1614570_1615875_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX50336.1|1615876_1616515_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50337.1|1616517_1617678_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX50338.1|1617704_1619060_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX50339.1|1619063_1620134_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX50340.1|1620272_1620509_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX50341.1|1620596_1621703_+	GTPase HflX	NA	NA	NA	NA	NA
AZX50342.1|1621668_1622973_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX50343.1|1622991_1623891_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX50344.1|1624074_1625232_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX50345.1|1625296_1626604_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX50346.1|1626717_1627257_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX50347.1|1627534_1627747_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX50348.1|1627766_1629797_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX52414.1|1630596_1632765_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX50349.1|1633174_1633474_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50350.1|1633758_1634172_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX50351.1|1634131_1635082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50352.1|1635068_1635269_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50353.1|1635281_1636367_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZX50354.1|1636382_1637144_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX50355.1|1637140_1638064_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZX50356.1|1638162_1638687_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX50357.1|1638695_1639439_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZX50358.1|1639534_1639774_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50359.1|1639787_1639940_-	lipoprotein	NA	NA	NA	NA	NA
AZX50360.1|1640025_1641516_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZX50361.1|1641607_1642546_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZX50362.1|1642542_1642719_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZX50363.1|1642721_1643384_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZX52415.1|1645005_1645149_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZX50364.1|1645145_1646120_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50365.1|1646286_1647237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50366.1|1647233_1648508_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX50367.1|1648605_1649805_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX50368.1|1649801_1650455_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX50369.1|1650451_1651888_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX50370.1|1651875_1652235_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX50371.1|1654153_1656019_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX52416.1|1656276_1657797_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX50372.1|1657884_1658535_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZX50373.1|1659483_1660779_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX50374.1|1660800_1661685_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52417.1|1661783_1662659_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX50375.1|1662648_1663005_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX50376.1|1663078_1664110_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX50377.1|1664239_1664419_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX50378.1|1664516_1665041_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX50379.1|1665051_1665888_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX50380.1|1666000_1666372_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX50381.1|1666368_1666920_+	ATPase	NA	NA	NA	NA	NA
AZX50382.1|1666935_1668627_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX50383.1|1668675_1669356_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50384.1|1669603_1670068_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50385.1|1670237_1671167_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX50386.1|1671179_1671827_-	hypothetical protein	NA	NA	NA	NA	NA
AZX50387.1|1671900_1673718_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX50388.1|1673801_1674752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50389.1|1675404_1676355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	2365199	2428641	4112103	transposase	uncultured_Caudovirales_phage(40.0%)	53	NA	NA
AZX50931.1|2365199_2366150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50932.1|2366519_2367092_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX50933.1|2367094_2368105_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX50934.1|2368097_2368598_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX50935.1|2368608_2368950_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX50936.1|2368961_2369753_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX50937.1|2369769_2370039_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX50938.1|2370061_2370850_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX52449.1|2370896_2371913_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX50939.1|2372129_2373572_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX50940.1|2373750_2375370_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX50941.1|2375490_2377311_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX50942.1|2377389_2378922_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX50943.1|2378955_2380602_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX50944.1|2380671_2381694_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX50945.1|2381711_2382845_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX50946.1|2382847_2383537_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX50947.1|2383536_2384322_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX50948.1|2384365_2385130_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX50949.1|2385168_2386590_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX50950.1|2386655_2387360_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX50951.1|2387407_2387827_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX50952.1|2387839_2388247_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX52450.1|2388430_2389141_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX50953.1|2389267_2389558_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX50954.1|2389575_2390058_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX50955.1|2394563_2395718_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX52451.1|2396023_2397040_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX50956.1|2397286_2398075_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX50957.1|2398141_2398822_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX50958.1|2398818_2399589_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX50959.1|2399687_2400638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50960.1|2400736_2401687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX50961.1|2401742_2402660_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX50962.1|2402670_2403849_-	mandelate racemase	NA	NA	NA	NA	NA
AZX50963.1|2403868_2404864_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50964.1|2406452_2407061_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX50965.1|2407048_2408089_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX50966.1|2408106_2409069_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50967.1|2409065_2410259_-	CoA transferase	NA	NA	NA	NA	NA
AZX50968.1|2410255_2411053_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX50969.1|2411078_2412065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX50970.1|2412083_2414123_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX52452.1|2414324_2415005_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50971.1|2415018_2415930_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX50972.1|2415926_2416505_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX50973.1|2416643_2417549_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50974.1|2417556_2420976_+	nuclease	NA	NA	NA	NA	NA
AZX50975.1|2420963_2423564_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX50976.1|2424519_2425152_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX50977.1|2425545_2426304_+	hypothetical protein	NA	NA	NA	NA	NA
AZX50978.1|2426300_2427503_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX50979.1|2427690_2428641_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	2595312	2638811	4112103	transposase,tRNA	Bacillus_phage(50.0%)	32	NA	NA
AZX51110.1|2595312_2596263_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51111.1|2596361_2597243_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX51112.1|2597320_2598700_-	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZX51113.1|2598738_2599584_-	FTR1 family iron permease	NA	NA	NA	NA	NA
AZX51114.1|2599599_2599944_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZX51115.1|2599946_2600483_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51116.1|2600655_2601231_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZX51117.1|2601333_2602071_-	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX51118.1|2602138_2603776_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZX51119.1|2603883_2604639_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZX51120.1|2604626_2605589_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZX51121.1|2605690_2606491_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZX51122.1|2606552_2608628_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZX51123.1|2608792_2611168_+	protein tex	NA	NA	NA	NA	NA
AZX51124.1|2611248_2612604_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZX51125.1|2614082_2614805_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX51126.1|2614859_2615843_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51127.1|2615972_2616923_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51128.1|2617021_2617972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX51129.1|2618070_2619021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51130.1|2619017_2619920_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51131.1|2620007_2620766_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX51132.1|2620778_2621927_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX51133.1|2621967_2623395_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX51134.1|2623624_2624839_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX51135.1|2624884_2627755_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX51136.1|2628079_2629030_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51137.1|2631214_2631703_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX51138.1|2631828_2634525_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX51139.1|2634679_2636962_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX51140.1|2637129_2637762_+	fimbrial protein	NA	NA	NA	NA	NA
AZX51141.1|2637860_2638811_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
>prophage 17
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	2660729	2775045	4112103	tRNA,transposase,holin	uncultured_Mediterranean_phage(17.65%)	97	NA	NA
AZX51155.1|2660729_2662250_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX51156.1|2662577_2663210_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51157.1|2663288_2665154_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX51158.1|2665150_2665966_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX51159.1|2665973_2667089_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX51160.1|2667993_2668872_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX51161.1|2668871_2669696_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX51162.1|2669863_2670814_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51163.1|2670995_2673875_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX51164.1|2673856_2674633_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX51165.1|2674725_2676189_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX51166.1|2676185_2676557_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX51167.1|2676574_2677888_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51168.1|2677924_2678383_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX51169.1|2679442_2680456_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX51170.1|2680595_2681582_+	homoserine kinase	NA	NA	NA	NA	NA
AZX51171.1|2681625_2682426_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51172.1|2683228_2684179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX51173.1|2684330_2684933_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51174.1|2684951_2685584_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX51175.1|2685821_2687708_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX51176.1|2687726_2688569_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX51177.1|2688565_2689924_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX51178.1|2690144_2690939_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX51179.1|2691169_2692663_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX51180.1|2692898_2694980_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX51181.1|2695174_2696215_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX51182.1|2696349_2697366_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX51183.1|2697387_2698245_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX52467.1|2698289_2699066_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX51184.1|2699433_2700384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51185.1|2700482_2701433_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51186.1|2701459_2701924_-	barstar family protein 2	NA	NA	NA	NA	NA
AZX51187.1|2703130_2705419_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX51188.1|2705535_2706408_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51189.1|2706450_2707605_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX51190.1|2707639_2708470_-	transglycosylase	NA	NA	NA	NA	NA
AZX51191.1|2708553_2710098_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX51192.1|2710140_2710500_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51193.1|2710501_2710915_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX51194.1|2710955_2711273_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX51195.1|2711357_2712074_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52468.1|2712337_2713759_+	siroheme synthase	NA	NA	NA	NA	NA
AZX52469.1|2716806_2717823_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX52470.1|2718158_2718800_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX51196.1|2718890_2720327_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX51197.1|2720484_2721558_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX51198.1|2721554_2722691_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX51199.1|2722835_2723180_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX51200.1|2723246_2725127_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX51201.1|2725176_2726112_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX52471.1|2726444_2727461_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX51202.1|2728398_2729826_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX51203.1|2729822_2730845_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX51204.1|2730834_2731308_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX51205.1|2731433_2732336_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZX51206.1|2732332_2733976_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX52472.1|2733972_2734980_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX52473.1|2735810_2736827_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX51207.1|2736926_2737559_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX51208.1|2737567_2737957_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX51209.1|2738009_2739062_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX51210.1|2739477_2740428_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51211.1|2740526_2741477_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51212.1|2742023_2743730_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX51213.1|2743803_2744304_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX51214.1|2744318_2746376_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX51215.1|2746402_2746696_-	response regulator	NA	NA	NA	NA	NA
AZX51216.1|2746797_2747745_-	motility protein MotB	NA	NA	NA	NA	NA
AZX51217.1|2747757_2748633_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX51218.1|2748753_2749314_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX51219.1|2749348_2749672_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX51220.1|2750107_2750845_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX51221.1|2751143_2752094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51222.1|2752337_2752601_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX51223.1|2752674_2752956_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51224.1|2752972_2753833_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX51225.1|2753829_2754165_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51226.1|2754218_2754869_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX51227.1|2755053_2756529_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
AZX51228.1|2756549_2757494_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51229.1|2757539_2757857_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51230.1|2757859_2758798_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX51231.1|2758975_2759461_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX51232.1|2759479_2760028_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX51233.1|2760304_2761438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51234.1|2761475_2762183_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZX52474.1|2762337_2764686_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX51235.1|2764682_2765621_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX51236.1|2765646_2766837_+	acetate kinase	NA	NA	NA	NA	NA
AZX51237.1|2766833_2767607_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX51238.1|2767636_2768830_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX51239.1|2768947_2769958_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX51240.1|2769975_2772012_-	transketolase	NA	NA	NA	NA	NA
AZX51241.1|2772206_2772947_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX51242.1|2773045_2773996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51243.1|2774094_2775045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	2820455	2875817	4112103	transposase	Streptococcus_phage(22.22%)	53	NA	NA
AZX51272.1|2820455_2821406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51273.1|2821504_2822089_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX51274.1|2822123_2823113_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX51275.1|2823109_2824051_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX51276.1|2824047_2825268_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX51277.1|2825310_2825625_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX51278.1|2825816_2826176_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX51279.1|2826177_2827908_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX51280.1|2828080_2828752_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX51281.1|2828766_2830095_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX51282.1|2830091_2830991_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX51283.1|2831077_2832163_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX51284.1|2832155_2833289_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX51285.1|2833288_2835970_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX51286.1|2836340_2836922_+	OmpA family protein	NA	NA	NA	NA	NA
AZX51287.1|2836999_2837773_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX51288.1|2837769_2838447_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX51289.1|2838662_2839844_+	MFS transporter	NA	NA	NA	NA	NA
AZX51290.1|2840320_2840578_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51291.1|2840616_2840799_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX51292.1|2840828_2841779_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52478.1|2841908_2842301_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX51293.1|2842577_2843489_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX51294.1|2843613_2844588_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51295.1|2844584_2845535_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51296.1|2845669_2846776_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51297.1|2846786_2847884_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX51298.1|2848028_2849234_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX51299.1|2849240_2849762_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX51300.1|2849758_2850250_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX51301.1|2850246_2850498_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX51302.1|2850478_2850964_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX51303.1|2851099_2854561_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51304.1|2854557_2855463_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX51305.1|2855472_2855904_-	lipoprotein	NA	NA	NA	NA	NA
AZX52479.1|2856150_2856654_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX51306.1|2856665_2858132_+	MFS transporter	NA	NA	NA	NA	NA
AZX51307.1|2858206_2859082_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52480.1|2859078_2860086_-	biotin synthase	NA	NA	NA	NA	NA
AZX51308.1|2860553_2860859_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX51309.1|2860949_2861540_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52481.1|2861730_2862747_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX51310.1|2862938_2865275_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX51311.1|2865357_2865792_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX51312.1|2865890_2866841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51313.1|2866837_2867632_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX51314.1|2867663_2868368_-	oxidoreductase	NA	NA	NA	NA	NA
AZX51315.1|2868442_2869243_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX51316.1|2869239_2869647_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX51317.1|2869643_2870285_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX51318.1|2870277_2872299_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX51319.1|2873538_2874870_+	MFS transporter	NA	NA	NA	NA	NA
AZX51320.1|2874866_2875817_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	2899239	2961938	4112103	transposase,protease	uncultured_Mediterranean_phage(22.22%)	55	NA	NA
AZX51334.1|2899239_2901591_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX52482.1|2901610_2903779_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX51335.1|2903775_2908965_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX51336.1|2909054_2909369_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX51337.1|2909596_2909842_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX51338.1|2909936_2910455_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX51339.1|2910554_2911760_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX51340.1|2911875_2913273_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX51341.1|2913389_2913968_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX51342.1|2914040_2915432_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX51343.1|2915599_2916550_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51344.1|2916830_2917451_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX51345.1|2917447_2917861_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX51346.1|2917857_2918901_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX51347.1|2918956_2919145_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51348.1|2919154_2919919_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX51349.1|2920009_2920666_+	adenylate kinase	NA	NA	NA	NA	NA
AZX51350.1|2920757_2921516_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX51351.1|2921541_2923143_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX51352.1|2923343_2924348_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX51353.1|2924448_2924712_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX51354.1|2924829_2925606_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX51355.1|2928481_2929594_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX51356.1|2929650_2930601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51357.1|2930809_2931031_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
AZX51358.1|2931244_2932651_-	threonine synthase	NA	NA	NA	NA	NA
AZX51359.1|2932647_2933952_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
AZX51360.1|2933948_2935256_-	alanine transaminase	NA	NA	NA	NA	NA
AZX51361.1|2935352_2935805_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51362.1|2935807_2936272_+	peroxiredoxin	NA	NA	NA	NA	NA
AZX51363.1|2936351_2938031_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
AZX51364.1|2938135_2939113_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AZX51365.1|2939192_2940161_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
AZX51366.1|2940181_2941555_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AZX51367.1|2941551_2942388_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51368.1|2942504_2942960_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
AZX51369.1|2942975_2943248_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AZX51370.1|2943340_2943664_-	primosomal replication protein N	NA	NA	NA	NA	NA
AZX51371.1|2943711_2944092_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
AZX51372.1|2944311_2945109_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
AZX51373.1|2945265_2947128_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AZX51374.1|2947177_2948089_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AZX51375.1|2948093_2948360_-	exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA	NA
AZX52483.1|2948446_2949277_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51376.1|2949451_2950417_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51377.1|2950587_2951598_+	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AZX51378.1|2951604_2952897_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX51379.1|2952893_2953844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51380.1|2954039_2955512_-	magnesium transporter	NA	NA	NA	NA	NA
AZX51381.1|2955522_2955933_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX51382.1|2955996_2957043_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
AZX51383.1|2957149_2958028_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51384.1|2958041_2959238_-	amidohydrolase	NA	NA	NA	NA	NA
AZX51385.1|2959299_2960991_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AZX51386.1|2960987_2961938_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	2970697	3004678	4112103	transposase	Bacillus_virus(50.0%)	35	NA	NA
AZX51393.1|2970697_2971648_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51394.1|2971728_2972877_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX51395.1|2972933_2973884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51396.1|2973870_2974089_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51397.1|2973982_2974288_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX51398.1|2974316_2974751_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX51399.1|2974752_2975997_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX51400.1|2975993_2976704_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52484.1|2976718_2977630_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51401.1|2977992_2978397_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51402.1|2978393_2978852_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51403.1|2978858_2979767_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52485.1|2979763_2980630_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX51404.1|2980616_2981444_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX51405.1|2981454_2982582_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX51406.1|2983659_2984898_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51407.1|2984939_2986202_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX51408.1|2986208_2986961_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX51409.1|2987012_2987198_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52486.1|2987473_2987938_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX51410.1|2987969_2988629_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX51411.1|2988773_2990882_+	AsmA family protein	NA	NA	NA	NA	NA
AZX51412.1|2990878_2991829_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51413.1|2991932_2992553_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52487.1|2992656_2993397_+	oxidoreductase	NA	NA	NA	NA	NA
AZX51414.1|2994531_2995656_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51415.1|2995701_2996070_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51416.1|2996311_2997262_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51417.1|2998297_2998840_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51418.1|2999044_2999239_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51419.1|2999225_3000176_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51420.1|3000172_3001138_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51421.1|3001207_3002044_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX51422.1|3002520_3003666_+	porin	NA	NA	NA	NA	NA
AZX51423.1|3003727_3004678_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	3127290	3191123	4112103	transposase,protease,tRNA	Pseudomonas_phage(30.0%)	57	NA	NA
AZX51521.1|3127290_3128241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52496.1|3128386_3129511_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
AZX51522.1|3129716_3130280_+	hydrolase	NA	NA	NA	NA	NA
AZX51523.1|3131274_3131757_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AZX51524.1|3131914_3133162_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
AZX51525.1|3133381_3134038_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AZX51526.1|3134073_3135303_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX51527.1|3135570_3136521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51528.1|3136612_3138028_+	metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
AZX51529.1|3138033_3139170_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
AZX51530.1|3139239_3139611_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
AZX51531.1|3139698_3140445_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51532.1|3140481_3141546_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AZX51533.1|3141734_3142127_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AZX52497.1|3142136_3142565_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AZX51534.1|3142860_3143958_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX51535.1|3144299_3145664_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AZX51536.1|3145722_3146274_+	DUF615 domain-containing protein	NA	NA	NA	NA	NA
AZX51537.1|3146287_3146962_+	carboxylesterase	NA	NA	NA	NA	NA
AZX51538.1|3148218_3149028_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
AZX51539.1|3149030_3149867_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX51540.1|3149881_3150574_+	cysteine hydrolase	NA	NA	NA	NA	NA
AZX51541.1|3150585_3150975_-	VOC family protein	NA	NA	NA	NA	NA
AZX51542.1|3151080_3152469_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
AZX51543.1|3152585_3154082_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51544.1|3154945_3155164_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51545.1|3155150_3156101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51546.1|3156097_3158557_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX52498.1|3158653_3160099_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AZX51547.1|3160102_3161290_-	MFS transporter	NA	NA	NA	NA	NA
AZX51548.1|3161358_3161868_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51549.1|3162069_3162522_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX52500.1|3162694_3162952_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52499.1|3163083_3166146_+	pyruvate ferredoxin oxidoreductase	NA	NA	NA	NA	NA
AZX51550.1|3166451_3169379_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
AZX51551.1|3169400_3170597_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
AZX51552.1|3170914_3171442_+	histone	NA	NA	NA	NA	NA
AZX51553.1|3171580_3172156_+	YggT family protein	NA	NA	NA	NA	NA
AZX51554.1|3172163_3173627_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
AZX51555.1|3173637_3174765_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
AZX51556.1|3174772_3174898_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52501.1|3174894_3176022_-	teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AZX51557.1|3176047_3176287_-	acyl carrier protein	NA	NA	NA	NA	NA
AZX51558.1|3176567_3177071_-	lipoprotein	NA	NA	NA	NA	NA
AZX52502.1|3177243_3178185_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
AZX51559.1|3178196_3179294_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
AZX51560.1|3180259_3181606_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX51561.1|3181615_3182065_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX51562.1|3182154_3182589_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AZX51563.1|3182667_3183216_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AZX51564.1|3183298_3184669_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AZX51565.1|3184679_3185273_+	esterase	NA	NA	NA	NA	NA
AZX51566.1|3185344_3187228_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
AZX51567.1|3187265_3188165_+	energy transducer TonB	NA	NA	NA	NA	NA
AZX51568.1|3188161_3189025_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AZX51569.1|3189123_3190074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX51570.1|3190172_3191123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	3239266	3264208	4112103	transposase,holin	Bovine_alphaherpesvirus(20.0%)	22	NA	NA
AZX51606.1|3239266_3240217_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51607.1|3240661_3240973_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX51608.1|3240972_3241503_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51609.1|3241665_3242616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51610.1|3242714_3243665_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51611.1|3243954_3244419_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX51612.1|3244433_3245939_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX51613.1|3246192_3247800_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX51614.1|3247855_3248761_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX51615.1|3249201_3250152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51616.1|3250290_3251043_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZX51617.1|3251281_3253006_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZX51618.1|3253025_3254285_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX51619.1|3254299_3255394_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZX51620.1|3255390_3257517_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZX51621.1|3257529_3258210_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZX52505.1|3258487_3259861_+	MFS transporter	NA	NA	NA	NA	NA
AZX51622.1|3259862_3260882_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZX51623.1|3260945_3261917_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51624.1|3261981_3262932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51625.1|3263030_3263873_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX51626.1|3263872_3264208_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 23
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	3285933	3333942	4112103	transposase,integrase	Planktothrix_phage(33.33%)	37	3319608:3319626	3339496:3339514
AZX51648.1|3285933_3286884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52508.1|3287196_3288675_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX51649.1|3288681_3289791_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX51650.1|3289802_3290483_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX51651.1|3290504_3291260_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX52509.1|3291395_3292280_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX51652.1|3292367_3292949_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51653.1|3293041_3293164_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51654.1|3293209_3293509_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX52510.1|3293660_3294086_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51655.1|3296292_3296796_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX51656.1|3296811_3297762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51657.1|3297748_3297946_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51658.1|3298289_3299063_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX51659.1|3299195_3300206_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51660.1|3300357_3302013_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX51661.1|3302067_3302409_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX51662.1|3302422_3303862_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX51663.1|3303994_3304810_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51664.1|3304828_3305017_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51665.1|3305003_3305954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51666.1|3307341_3308289_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51667.1|3308515_3309256_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51668.1|3309341_3310292_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51669.1|3311733_3313305_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX51670.1|3313637_3315491_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51671.1|3315535_3318100_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX51672.1|3318518_3319469_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3319608:3319626	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX51673.1|3322334_3322829_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX51674.1|3322845_3323796_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51675.1|3323782_3323983_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51676.1|3323979_3325191_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX51677.1|3325206_3328158_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX51678.1|3328159_3331279_-	restriction endonuclease	NA	NA	NA	NA	NA
AZX52511.1|3331275_3331416_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX51679.1|3331426_3332473_-	Fic family protein	NA	NA	NA	NA	NA
AZX51680.1|3332814_3333942_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
3339496:3339514	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 24
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	3385699	3439439	4112103	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZX51720.1|3385699_3386650_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51721.1|3387054_3387699_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX51722.1|3387723_3388308_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX51723.1|3388408_3389026_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX51724.1|3389028_3390744_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX51725.1|3390740_3391049_-	urease subunit beta	NA	NA	NA	NA	NA
AZX51726.1|3391065_3391701_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX51727.1|3391727_3392030_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX51728.1|3392130_3392985_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX51729.1|3393566_3393839_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX51730.1|3394256_3394664_-	GFA family protein	NA	NA	NA	NA	NA
AZX51731.1|3395033_3395828_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51732.1|3395928_3397164_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX51733.1|3397232_3398249_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51734.1|3398245_3399637_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX51735.1|3399633_3400830_+	MFS transporter	NA	NA	NA	NA	NA
AZX51736.1|3400826_3402365_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX51737.1|3402361_3403621_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51738.1|3405561_3406512_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51739.1|3407277_3408372_-	CoA transferase	NA	NA	NA	NA	NA
AZX51740.1|3408364_3409699_-	CoA ligase	NA	NA	NA	NA	NA
AZX51741.1|3409652_3410336_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51742.1|3410361_3411525_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX51743.1|3411521_3412523_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX51744.1|3412522_3413395_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX51745.1|3413391_3414141_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX51746.1|3414137_3414929_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX51747.1|3414925_3416065_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX51748.1|3416373_3417126_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX51749.1|3417159_3417942_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX51750.1|3417945_3418335_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX51751.1|3419474_3420338_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX51752.1|3420373_3421462_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51753.1|3421458_3422409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51754.1|3422395_3422764_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51755.1|3422762_3425741_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51756.1|3426667_3427546_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX51757.1|3429494_3430445_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51758.1|3430441_3430909_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX51759.1|3430951_3431722_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX51760.1|3431742_3432543_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX51761.1|3432553_3433963_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX51762.1|3434057_3434843_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX52514.1|3435082_3436099_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX51763.1|3436206_3436599_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX51764.1|3436736_3437417_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX51765.1|3437421_3438420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51766.1|3438488_3439439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	3445593	3504893	4112103	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZX51771.1|3445593_3447357_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX51772.1|3447468_3448347_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX51773.1|3448459_3449275_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX51774.1|3449278_3449530_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX52515.1|3449614_3450631_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX51775.1|3450961_3451183_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51776.1|3453543_3454461_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX51777.1|3454958_3456167_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX51778.1|3456246_3457818_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX51779.1|3457935_3458871_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX51780.1|3459059_3460004_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX51781.1|3460072_3460288_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51782.1|3460571_3466289_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX51783.1|3466294_3467422_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX51784.1|3467477_3468104_+	aminotransferase	NA	NA	NA	NA	NA
AZX52516.1|3468375_3469392_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX51785.1|3469487_3470198_-	oxidoreductase	NA	NA	NA	NA	NA
AZX52517.1|3470194_3471184_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51786.1|3471315_3472911_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX51787.1|3472913_3473651_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51788.1|3473806_3474679_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX51789.1|3474947_3476168_+	MFS transporter	NA	NA	NA	NA	NA
AZX51790.1|3476164_3476824_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX51791.1|3476895_3477528_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX51792.1|3477557_3478076_+	flavin reductase	NA	NA	NA	NA	NA
AZX51793.1|3478086_3479196_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX51794.1|3479242_3480097_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX51795.1|3480098_3481001_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51796.1|3482223_3483174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51797.1|3484930_3485920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51798.1|3486095_3486884_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX51799.1|3486880_3487912_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX51800.1|3487930_3488494_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX51801.1|3488549_3490070_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX51802.1|3490333_3491038_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX51803.1|3491045_3491783_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX51804.1|3491888_3492263_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX51805.1|3492305_3493595_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51806.1|3493591_3494761_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX51807.1|3494757_3495597_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX51808.1|3495656_3496592_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX51809.1|3496604_3497555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51810.1|3497653_3498616_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX51811.1|3498647_3499007_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX51812.1|3499131_3500034_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX51813.1|3500035_3501808_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX51814.1|3501842_3502619_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX51815.1|3503942_3504893_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	3519831	3588984	4112103	transposase,tRNA	Planktothrix_phage(10.0%)	55	NA	NA
AZX51827.1|3519831_3520782_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51828.1|3520910_3522044_-	peptidase	NA	NA	NA	NA	NA
AZX51829.1|3522087_3522993_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX51830.1|3522995_3524696_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX51831.1|3524692_3525613_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX51832.1|3525620_3526598_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX51833.1|3526656_3527691_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX51834.1|3529665_3529902_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51835.1|3530028_3530892_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX51836.1|3530980_3531802_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX51837.1|3531881_3532619_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX51838.1|3532615_3533608_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX51839.1|3533721_3534384_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51840.1|3534428_3535577_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX51841.1|3537900_3538851_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51842.1|3541323_3542250_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX51843.1|3542268_3542733_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX51844.1|3543575_3544367_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX51845.1|3544398_3545019_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX51846.1|3545015_3545645_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX51847.1|3545657_3546266_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX51848.1|3546262_3547252_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX51849.1|3547357_3548572_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX51850.1|3550523_3551474_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52520.1|3552907_3554194_+	hypothetical protein	NA	NA	NA	NA	NA
AZX51851.1|3554359_3554668_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX51852.1|3554668_3555334_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX51853.1|3555374_3557165_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX51854.1|3557277_3558138_+	endonuclease	NA	NA	NA	NA	NA
AZX51855.1|3558134_3559340_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX51856.1|3559336_3560221_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX51857.1|3561737_3562172_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX51858.1|3562134_3563133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51859.1|3563244_3564390_+	transporter	NA	NA	NA	NA	NA
AZX51860.1|3564464_3565793_+	amidase	NA	NA	NA	NA	NA
AZX51861.1|3565826_3566417_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX51862.1|3566706_3567501_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX51863.1|3568670_3569405_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX52521.1|3569411_3570239_-	copper resistance protein B	NA	NA	NA	NA	NA
AZX51864.1|3572108_3572606_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51865.1|3572902_3573853_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX51866.1|3575040_3575913_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX51867.1|3575909_3576860_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX51868.1|3576958_3577909_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52523.1|3578013_3578244_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52522.1|3578370_3578760_-	hypothetical protein	NA	NA	NA	NA	NA
AZX51869.1|3578776_3581158_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX51870.1|3581150_3582527_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX51871.1|3582542_3583538_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX51872.1|3583556_3584549_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX51873.1|3584789_3585350_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX51874.1|3585354_3585681_-	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX51875.1|3585717_3586530_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX51876.1|3586540_3587623_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX51877.1|3587709_3588984_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
>prophage 28
CP025366	Bordetella pertussis strain F954 chromosome, complete genome	4112103	4011173	4076083	4112103	transposase	Planktothrix_phage(40.0%)	57	NA	NA
AZX52255.1|4011173_4011659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52256.1|4013122_4013932_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX52257.1|4013971_4014652_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX52258.1|4014645_4015104_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX52259.1|4015115_4015478_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX52260.1|4015560_4016244_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX52261.1|4016299_4016608_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX52262.1|4016626_4016941_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX52263.1|4016937_4019412_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX52264.1|4019419_4020811_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX52265.1|4020807_4020993_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX52266.1|4020971_4021673_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX52267.1|4021669_4022491_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX52543.1|4022471_4023596_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX52268.1|4023588_4024608_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX52269.1|4024813_4025848_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX52544.1|4025948_4026740_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX52270.1|4026822_4027197_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX52271.1|4027174_4028584_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX52272.1|4028576_4029959_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX52273.1|4030293_4031898_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX52274.1|4031933_4032947_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX52275.1|4032957_4033884_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX52276.1|4034274_4035225_-|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AZX52277.1|4035394_4036621_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX52278.1|4036820_4037687_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX52279.1|4037679_4038642_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX52280.1|4038742_4039693_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52281.1|4039791_4040742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52282.1|4040738_4042232_-	RND transporter	NA	NA	NA	NA	NA
AZX52283.1|4042228_4045336_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX52284.1|4045332_4048401_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX52285.1|4048397_4049648_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX52286.1|4049828_4050590_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX52287.1|4050622_4051273_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX52288.1|4051275_4052115_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX52289.1|4052355_4053099_+	hypothetical protein	NA	NA	NA	NA	NA
AZX52290.1|4053181_4053529_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX52291.1|4053626_4054469_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX52292.1|4054513_4055401_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX52293.1|4055427_4055616_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX52294.1|4055713_4057171_+	MFS transporter	NA	NA	NA	NA	NA
AZX52295.1|4057157_4058684_+	glycerol kinase	NA	NA	NA	NA	NA
AZX52296.1|4058702_4059170_-	hypothetical protein	NA	NA	NA	NA	NA
AZX52297.1|4059169_4060192_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX52298.1|4060312_4061053_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX52299.1|4061107_4062208_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX52300.1|4062209_4063400_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX52301.1|4063519_4064536_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX52302.1|4064854_4065526_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX52303.1|4065522_4066431_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX52304.1|4066642_4067290_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX52305.1|4071141_4072218_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX52306.1|4072228_4073038_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX52307.1|4073127_4073901_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX52308.1|4074083_4075034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX52309.1|4075132_4076083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
