The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	0	122073	4104135	transposase,tRNA,protease	Planktothrix_phage(16.67%)	110	NA	NA
AZX45380.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX45381.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX45382.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX45383.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX45384.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX45385.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX45386.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX45387.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX45388.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX45389.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX45390.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX45391.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX45392.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX45393.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX48775.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX45394.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45395.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX45396.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX45397.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45398.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX45399.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45400.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX45401.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX48776.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45402.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX45403.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX45404.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45405.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX45406.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX45407.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX45408.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX45409.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX45410.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX45411.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX45412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX45413.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX45414.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45415.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45416.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX45417.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45418.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX45419.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX45420.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45421.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX45422.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX45423.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX45424.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX45425.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX45426.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45427.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45428.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX45429.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX45430.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45431.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45432.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX45433.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX45434.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX45435.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX45436.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45437.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45438.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX45439.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX45440.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX45441.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX45442.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48777.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45443.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX45444.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48778.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45445.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX45446.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX45447.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX45448.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX45449.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX45450.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX45451.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX45452.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX45453.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX45454.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX45455.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX45456.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX45457.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45458.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX45459.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX45460.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX45461.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX45462.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45463.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX45464.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX45465.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX45466.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX45467.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX45468.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX45469.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX45470.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX45471.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX45472.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45473.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX45474.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX45475.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX45476.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX48779.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX45477.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48780.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX45478.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX45479.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX45480.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45481.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX45482.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX45483.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	164894	225405	4104135	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX45514.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45515.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45516.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZX45517.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX45518.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX45519.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX45520.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48786.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZX45521.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45522.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZX45523.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZX45524.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX45525.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX45526.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45527.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX45528.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX45529.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX45530.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX45531.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZX45532.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX48787.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX45533.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45534.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX45535.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX45536.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45537.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX45538.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX45539.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX45540.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX45541.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX45542.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45543.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZX45544.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45545.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45546.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX45547.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZX45548.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX45549.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZX45550.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX45551.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX45552.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX48788.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45553.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX45554.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX45555.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX45556.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX45557.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX45558.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX45559.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX45560.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX45561.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	233337	286925	4104135	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
AZX45569.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45570.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45571.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45572.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX45573.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX45574.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45575.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45576.1|241550_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45577.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45578.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX45579.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX45580.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX45581.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX45582.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX45583.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX45584.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX45585.1|253600_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48789.1|254381_255626_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX45586.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX45587.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX45588.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
AZX45589.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX45590.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45591.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX45592.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
AZX45593.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45594.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45595.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45596.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX45597.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX45598.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX45599.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX45600.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX45601.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX45602.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX45603.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45604.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45605.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX45606.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45607.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX45608.1|279656_280268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX45609.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
AZX45610.1|281300_282683_-	cytochrome b	NA	NA	NA	NA	NA
AZX45611.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX45612.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX45613.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX48790.1|284841_285978_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX45614.1|285974_286925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	390858	448367	4104135	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX45713.1|390858_391809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45714.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
AZX45715.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX45716.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
AZX45717.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45718.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
AZX45719.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45720.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48796.1|400019_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX45721.1|401158_402142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45722.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45723.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX45724.1|403585_404827_-	CoA transferase	NA	NA	NA	NA	NA
AZX45725.1|404931_406638_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX45726.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45727.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX45728.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45729.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48797.1|411331_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45730.1|412387_413338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45731.1|413426_414341_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX45732.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
AZX45733.1|415086_416010_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX45734.1|416015_416471_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45735.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX48798.1|417490_417799_+	GtrA family protein	NA	NA	NA	NA	NA
AZX45736.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AZX45737.1|419374_420433_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX45738.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX45739.1|421149_422127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45740.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX45741.1|423524_425036_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX48799.1|425051_426365_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX45742.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45743.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX45744.1|430323_431274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45745.1|431405_431804_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX45746.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
AZX45747.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX45748.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX45749.1|436406_436925_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX45750.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX45751.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
AZX45752.1|439211_439997_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX45753.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45754.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45755.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX45756.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX45757.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX45758.1|447416_448367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	620803	721267	4104135	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX45910.1|620803_621754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45911.1|622452_622836_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45912.1|622893_623496_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX48805.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
AZX45913.1|624048_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45914.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX45915.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
AZX45916.1|627089_628139_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX45917.1|628286_628865_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX45918.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX45919.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX45920.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45921.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX45922.1|636792_637743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45923.1|637841_638642_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45924.1|638703_639087_+	thioredoxin	NA	NA	NA	NA	NA
AZX45925.1|639098_640532_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX45926.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX48806.1|641070_641739_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX45927.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX45928.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX45929.1|643204_643627_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX45930.1|643643_644744_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX45931.1|644840_646358_-	peptidase	NA	NA	NA	NA	NA
AZX45932.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX45933.1|647294_648176_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX45934.1|648257_649352_-	porin	NA	NA	NA	NA	NA
AZX45935.1|649645_650596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48807.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45936.1|651695_652055_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45937.1|652436_653474_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45938.1|653790_655131_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX45939.1|655140_655593_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45940.1|655689_656871_+	monooxygenase	NA	NA	NA	NA	NA
AZX45941.1|656930_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX45942.1|658002_658242_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX45943.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX45944.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX45945.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX45946.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX45947.1|662105_663074_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX45948.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX45949.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX45950.1|666171_667122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45951.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX45952.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX45953.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
AZX45954.1|669839_670595_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48808.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX45955.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX45956.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX45957.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX45958.1|673908_675651_+	sulfite reductase	NA	NA	NA	NA	NA
AZX45959.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX45960.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45961.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45962.1|678341_679292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45963.1|679543_679756_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48809.1|679821_680433_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX45964.1|680912_681233_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45965.1|681225_681924_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45966.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45967.1|682177_683128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48810.1|683803_684253_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX45968.1|684239_685517_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX45969.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX48811.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX45970.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX45971.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX45972.1|689423_690374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45973.1|690391_691039_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX45974.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45975.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX45976.1|691846_692047_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45977.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX45978.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX45979.1|692833_693256_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45980.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX45981.1|694018_694537_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX45982.1|694546_694876_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX45983.1|694893_695184_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX45984.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX45985.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45986.1|698258_698792_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX45987.1|698788_699178_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX45988.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX45989.1|703131_703548_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45990.1|703766_704030_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX45991.1|704029_704842_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45992.1|704846_705089_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45993.1|705067_705619_+	lysozyme	NA	NA	NA	NA	NA
AZX45994.1|705600_706134_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX45995.1|706130_706412_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45996.1|706754_706955_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45997.1|706961_707633_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX45998.1|707988_708675_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX45999.1|708655_709228_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX46000.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX46001.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX46002.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
AZX46003.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
AZX46004.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX46005.1|713673_714990_+	protein TolB	NA	NA	NA	NA	NA
AZX46006.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX46007.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX46008.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX46009.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX46010.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46011.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46012.1|720111_720330_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46013.1|720316_721267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	748192	821354	4104135	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZX46034.1|748192_749143_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46035.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX46036.1|750928_752194_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX46037.1|752351_753302_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46038.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX48813.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX46039.1|756715_757687_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46040.1|757818_758343_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX46041.1|758302_759253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46042.1|759474_761670_-	DNA methylase	NA	NA	NA	NA	NA
AZX46043.1|761742_762150_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX46044.1|762272_763223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46045.1|763338_763782_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX46046.1|763844_764639_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX46047.1|764804_765941_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX46048.1|766011_767145_-	GTPase ObgE	NA	NA	NA	NA	NA
AZX46049.1|767294_767555_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX46050.1|767588_767900_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX46051.1|768324_769473_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX46052.1|769587_770553_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX46053.1|770821_771688_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46054.1|771818_773867_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX46055.1|773884_775882_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX46056.1|775916_777254_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX46057.1|777516_779370_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46058.1|779424_780906_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX46059.1|780921_781509_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX48814.1|781591_781771_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46060.1|781957_787078_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX46061.1|787155_789294_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX46062.1|789290_790613_+	protein CyaD	NA	NA	NA	NA	NA
AZX46063.1|790614_792039_+	protein CyaE	NA	NA	NA	NA	NA
AZX46064.1|792129_793038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46065.1|793102_794017_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46066.1|794854_795538_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX46067.1|795554_796298_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX46068.1|796327_797188_+	aminotransferase	NA	NA	NA	NA	NA
AZX46069.1|797195_797762_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46070.1|797850_798807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46071.1|798851_799604_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX46072.1|799600_801346_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX46073.1|801430_802165_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46074.1|802481_803504_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX46075.1|803519_804242_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46076.1|804386_805394_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX46077.1|805434_806967_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX46078.1|806963_808082_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX46079.1|808078_808861_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX46080.1|808872_809736_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX48815.1|809754_810852_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46081.1|810920_811847_-	VOC family protein	NA	NA	NA	NA	NA
AZX46082.1|811881_813576_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX46083.1|813775_814711_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX46084.1|814816_815767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46085.1|815865_816522_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX46086.1|816669_819378_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX46087.1|819387_820407_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX46088.1|820403_821354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	854101	903365	4104135	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZX46117.1|854101_855052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48816.1|855024_855624_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46118.1|855625_856060_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX46119.1|856056_856491_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46120.1|856474_857278_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX46121.1|857294_858110_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX46122.1|858106_858922_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX46123.1|859068_859770_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46124.1|859797_861756_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX46125.1|861838_862789_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46126.1|863009_863678_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX46127.1|863801_864908_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX46128.1|864920_868034_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX46129.1|868030_869524_+	RND transporter	NA	NA	NA	NA	NA
AZX46130.1|869538_870210_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX46131.1|870253_870748_-	azurin	NA	NA	NA	NA	NA
AZX46132.1|870888_871536_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX48817.1|871639_873688_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX46133.1|873684_875697_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX46134.1|875722_877057_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX48818.1|877165_878158_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46135.1|878224_880309_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX46136.1|880333_881305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46137.1|881433_882435_-	peptidase M14	NA	NA	NA	NA	NA
AZX46138.1|882468_883710_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX46139.1|883790_884714_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX46140.1|884791_885616_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX46141.1|885812_886829_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX46142.1|887025_888009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46143.1|889607_890996_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX46144.1|891026_892016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46145.1|892126_893359_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX46146.1|893640_894441_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46147.1|894463_896695_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX46148.1|897482_897929_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX46149.1|897950_898697_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX46150.1|898840_899818_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX46151.1|900451_901063_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX46152.1|901056_902274_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX46153.1|902414_903365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	912977	977917	4104135	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX46162.1|912977_913928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46163.1|913924_915775_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX46164.1|916155_916815_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX46165.1|916902_917055_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46166.1|917163_917331_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46167.1|917342_918023_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX46168.1|918304_919021_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX46169.1|919035_920337_-	phospholipase	NA	NA	NA	NA	NA
AZX46170.1|922481_925370_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX46171.1|925593_926946_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX46172.1|926974_927496_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX46173.1|927492_928947_+	carboxylase	NA	NA	NA	NA	NA
AZX46174.1|928981_929230_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46175.1|929335_930211_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46176.1|930236_931292_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46177.1|931304_932096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46178.1|932128_933499_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX46179.1|934675_935626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46180.1|935678_935900_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46181.1|936059_936272_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46182.1|936391_937510_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX46183.1|937606_937822_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46184.1|938015_938267_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46185.1|938379_939330_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46186.1|939326_939710_-	ferredoxin	NA	NA	NA	NA	NA
AZX46187.1|939764_941582_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX48820.1|941728_942556_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX46188.1|942601_943582_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX46189.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46190.1|943787_944969_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX46191.1|945132_945867_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX46192.1|945868_948481_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX46193.1|948616_950530_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX46194.1|951145_951556_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX46195.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX46196.1|952837_953788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46197.1|953784_954759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46198.1|954883_955795_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX48821.1|956071_956464_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX46199.1|956593_957544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46200.1|957573_957756_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX46201.1|957794_958052_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46202.1|958528_959710_-	MFS transporter	NA	NA	NA	NA	NA
AZX46203.1|959925_960603_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX46204.1|960599_961373_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX46205.1|961450_962032_-	OmpA family protein	NA	NA	NA	NA	NA
AZX46206.1|962402_965084_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX46207.1|965083_966217_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX46208.1|966209_967295_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX46209.1|967381_968281_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX46210.1|968277_969606_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX46211.1|969620_970292_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX46212.1|970464_972195_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX46213.1|972196_972556_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX46214.1|972747_973062_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX46215.1|973104_974325_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX46216.1|974321_975263_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX46217.1|975259_976249_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX46218.1|976283_976868_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX46219.1|976966_977917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	997322	1060473	4104135	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZX46234.1|997322_998273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46235.1|998377_999427_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX46236.1|999564_1000581_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX46237.1|1002089_1002662_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX46238.1|1002721_1003453_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX48823.1|1003504_1004422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46239.1|1005229_1008409_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX46240.1|1008405_1009788_+	multidrug transporter	NA	NA	NA	NA	NA
AZX46241.1|1009857_1010109_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX46242.1|1010254_1010905_-	SCO family protein	NA	NA	NA	NA	NA
AZX46243.1|1011055_1013170_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX46244.1|1013245_1014097_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX46245.1|1014093_1014720_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX46246.1|1014716_1016471_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX46247.1|1016763_1019469_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX46248.1|1019481_1021143_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX46249.1|1021155_1022946_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX46250.1|1023167_1024343_-	flagellin FliC	NA	NA	NA	NA	NA
AZX46251.1|1024385_1025336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46252.1|1025434_1026175_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX46253.1|1026369_1028406_+	transketolase	NA	NA	NA	NA	NA
AZX46254.1|1028423_1029434_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX46255.1|1029551_1030745_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX46256.1|1030774_1031548_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX46257.1|1031544_1032735_-	acetate kinase	NA	NA	NA	NA	NA
AZX46258.1|1032760_1033699_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX48824.1|1033695_1036044_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX46259.1|1036198_1036906_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX46260.1|1036943_1038077_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46261.1|1038353_1038902_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX46262.1|1038920_1039406_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX46263.1|1039583_1040522_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX46264.1|1040524_1040842_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46265.1|1040887_1041832_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46266.1|1043512_1044163_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX46267.1|1044216_1044552_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46268.1|1044548_1045409_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX46269.1|1045425_1045707_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46270.1|1045780_1046044_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX46271.1|1046287_1047238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46272.1|1047536_1048274_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX46273.1|1048709_1049033_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX46274.1|1049067_1049628_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX46275.1|1049748_1050624_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX46276.1|1050636_1051584_+	motility protein MotB	NA	NA	NA	NA	NA
AZX46277.1|1051685_1051979_+	response regulator	NA	NA	NA	NA	NA
AZX46278.1|1052005_1054063_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX46279.1|1054077_1054578_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX46280.1|1054651_1056358_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX46281.1|1057221_1058274_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX46282.1|1058326_1058716_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX46283.1|1058724_1059357_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX46284.1|1059456_1060473_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	1066457	1134619	4104135	holin,transposase,tRNA	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
AZX46289.1|1066457_1067885_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX46290.1|1068822_1069839_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX46291.1|1070171_1071107_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX46292.1|1071156_1073037_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX46293.1|1073103_1073448_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX46294.1|1073592_1074729_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX46295.1|1074725_1075799_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX46296.1|1075956_1077393_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX48826.1|1077483_1078125_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX48827.1|1078460_1079477_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX48828.1|1082623_1084045_-	siroheme synthase	NA	NA	NA	NA	NA
AZX46297.1|1084308_1085025_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46298.1|1085109_1085427_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX46299.1|1085467_1085881_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX46300.1|1085882_1086242_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46301.1|1086284_1087829_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX46302.1|1087912_1088743_+	transglycosylase	NA	NA	NA	NA	NA
AZX46303.1|1088777_1089932_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX46304.1|1089974_1090847_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46305.1|1090963_1093252_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX46306.1|1094458_1094923_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX46307.1|1094949_1095900_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48829.1|1096267_1097044_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX46308.1|1097088_1097946_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX46309.1|1097967_1098984_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX46310.1|1099118_1100159_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX46311.1|1100353_1102435_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX46312.1|1102670_1104164_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX46313.1|1104394_1105189_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX46314.1|1105409_1106768_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX46315.1|1106764_1107607_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX46316.1|1107625_1109512_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX46317.1|1109749_1110382_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX46318.1|1110400_1111003_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46319.1|1111154_1112105_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46320.1|1112907_1113708_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46321.1|1113751_1114738_-	homoserine kinase	NA	NA	NA	NA	NA
AZX46322.1|1114877_1115891_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX46323.1|1115887_1116838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46324.1|1116950_1117409_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX46325.1|1117445_1118759_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46326.1|1118776_1119148_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX46327.1|1119144_1120608_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX46328.1|1120700_1121477_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX46329.1|1121458_1124338_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX46330.1|1124520_1125471_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46331.1|1125638_1126463_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX46332.1|1126462_1127341_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX46333.1|1128245_1129361_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46334.1|1129368_1130184_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX46335.1|1130180_1132046_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX46336.1|1132124_1132757_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46337.1|1132753_1133056_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46338.1|1133098_1134619_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	1316908	1385395	4104135	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZX46481.1|1316908_1317859_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46482.1|1318627_1319266_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX48839.1|1320155_1320602_+	glutamate racemase	NA	NA	NA	NA	NA
AZX46483.1|1320683_1321385_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZX46484.1|1321385_1322153_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZX46485.1|1322149_1323388_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZX46486.1|1323387_1324314_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZX46487.1|1324416_1325532_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46488.1|1325547_1326498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46489.1|1326851_1327433_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZX46490.1|1327429_1328263_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZX48840.1|1328473_1329787_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZX46491.1|1329963_1330845_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZX46492.1|1330864_1331716_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZX46493.1|1331768_1332857_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZX46494.1|1332967_1334095_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX48841.1|1334329_1334941_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX46495.1|1335039_1335990_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46496.1|1336211_1336589_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZX48842.1|1336736_1337234_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZX46497.1|1337230_1337758_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZX46498.1|1337891_1338707_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46499.1|1338719_1339901_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX46500.1|1339948_1340842_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZX48843.1|1340968_1341439_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46501.1|1341564_1342392_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZX46502.1|1342420_1343197_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZX46503.1|1343193_1343487_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZX46504.1|1343483_1343948_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX46505.1|1343959_1344745_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZX46506.1|1344770_1345271_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZX46507.1|1345353_1346532_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZX46508.1|1348159_1348495_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX46509.1|1348682_1350131_+	CoA transferase	NA	NA	NA	NA	NA
AZX48844.1|1350188_1350533_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZX46510.1|1350639_1351179_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX46511.1|1351271_1352222_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46512.1|1352208_1352691_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46513.1|1352960_1353392_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46514.1|1353573_1353978_-	DoxX family protein	NA	NA	NA	NA	NA
AZX46515.1|1355214_1355538_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46516.1|1355540_1356428_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX46517.1|1356460_1356886_-	universal stress protein	NA	NA	NA	NA	NA
AZX46518.1|1356957_1357311_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46519.1|1357550_1358057_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46520.1|1358095_1359427_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZX46521.1|1359486_1360302_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZX46522.1|1360298_1361153_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZX48845.1|1364215_1366759_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZX46523.1|1368125_1369880_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZX46524.1|1369876_1371997_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZX46525.1|1372001_1374197_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZX48846.1|1374193_1377535_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZX46526.1|1380337_1381288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46527.1|1381353_1381533_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48847.1|1381649_1382372_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX46528.1|1382391_1383537_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX46529.1|1384444_1385395_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	1445886	1501374	4104135	transposase,protease	Mollivirus(16.67%)	56	NA	NA
AZX46577.1|1445886_1446837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46578.1|1448038_1448485_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZX46579.1|1448477_1449953_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZX46580.1|1449949_1450705_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZX46581.1|1450697_1451708_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZX46582.1|1451697_1453374_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZX46583.1|1453686_1454019_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZX46584.1|1454032_1454428_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46585.1|1454437_1454764_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZX46586.1|1454760_1455087_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX46587.1|1455013_1456036_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX46588.1|1456032_1456413_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZX46589.1|1456430_1456859_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZX46590.1|1456866_1458240_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZX48851.1|1458380_1458758_-	flagellar protein	NA	NA	NA	NA	NA
AZX46591.1|1459020_1460328_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZX46592.1|1460388_1461219_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX46593.1|1461215_1461704_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZX46594.1|1461745_1463266_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZX48852.1|1463309_1463786_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX46595.1|1464589_1467187_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZX46596.1|1467216_1468038_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZX46597.1|1468764_1469514_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZX46598.1|1469646_1470576_+	elongation factor Ts	NA	NA	NA	NA	NA
AZX46599.1|1470673_1471390_+	UMP kinase	NA	NA	NA	NA	NA
AZX46600.1|1471404_1471965_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZX46601.1|1472002_1472896_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZX46602.1|1472915_1473773_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZX46603.1|1473769_1474969_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZX46604.1|1475008_1476343_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZX46605.1|1476395_1478732_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZX48853.1|1478857_1479421_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZX46606.1|1479429_1480521_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZX46607.1|1480592_1481048_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZX46608.1|1481048_1481843_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZX46609.1|1481839_1483021_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZX46610.1|1483007_1483613_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZX46611.1|1483609_1484383_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZX46612.1|1484394_1485222_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZX46613.1|1485383_1487747_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZX46614.1|1487814_1488534_-	GMP synthase	NA	NA	NA	NA	NA
AZX46615.1|1488657_1489083_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZX46616.1|1489117_1490068_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46617.1|1490185_1491112_+	paraslipin	NA	NA	NA	NA	NA
AZX46618.1|1491177_1492335_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX46619.1|1492315_1492783_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX46620.1|1492930_1493881_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46621.1|1493897_1494332_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX46622.1|1494321_1494672_+	RnfH family protein	NA	NA	NA	NA	NA
AZX46623.1|1494868_1496023_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX46624.1|1496019_1497192_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX46625.1|1497239_1498133_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX46626.1|1498178_1498616_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX46627.1|1498675_1499365_+	VIT family protein	NA	NA	NA	NA	NA
AZX46628.1|1499374_1500325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46629.1|1500423_1501374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	1540697	1598779	4104135	transposase,tRNA,protease	Planktothrix_phage(15.38%)	60	NA	NA
AZX46662.1|1540697_1541510_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX46663.1|1541654_1542749_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46664.1|1542960_1543590_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46665.1|1543592_1545260_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX46666.1|1545274_1545931_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX46667.1|1546410_1547361_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46668.1|1547387_1548161_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX46669.1|1548172_1549414_+	MFS transporter	NA	NA	NA	NA	NA
AZX46670.1|1551195_1552146_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46671.1|1552177_1553275_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX46672.1|1553271_1554222_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46673.1|1554643_1555036_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46674.1|1555041_1555818_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX46675.1|1556205_1558155_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX46676.1|1558175_1558721_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX46677.1|1558857_1559814_+	glutathione synthetase	NA	NA	NA	NA	NA
AZX46678.1|1559824_1560223_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX46679.1|1560338_1560608_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX46680.1|1560729_1562424_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX46681.1|1562588_1562813_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46682.1|1563411_1564362_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX46683.1|1564403_1565564_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46684.1|1565724_1566645_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX46685.1|1566657_1567299_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX46686.1|1567295_1567967_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX46687.1|1567963_1568734_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX46688.1|1568832_1569783_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46689.1|1569999_1570404_-	GFA family protein	NA	NA	NA	NA	NA
AZX46690.1|1570477_1571668_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX46691.1|1571701_1572028_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX46692.1|1572050_1572566_-	transporter	NA	NA	NA	NA	NA
AZX46693.1|1572624_1573851_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX46694.1|1574028_1575159_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX46695.1|1575393_1575975_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX46696.1|1576111_1577176_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX46697.1|1577260_1577707_-	GFA family protein	NA	NA	NA	NA	NA
AZX46698.1|1577931_1578813_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX46699.1|1578867_1579119_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX46700.1|1579121_1579523_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX46701.1|1579542_1579779_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46702.1|1579786_1580266_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX46703.1|1580451_1580931_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX46704.1|1580933_1582124_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX46705.1|1582128_1583181_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX46706.1|1583317_1584340_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX46707.1|1584431_1585268_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46708.1|1585460_1586366_+	agmatinase	NA	NA	NA	NA	NA
AZX46709.1|1586392_1587184_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46710.1|1587206_1587899_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX46711.1|1587920_1588673_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX46712.1|1588801_1590361_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX46713.1|1590392_1590938_+	acyl dehydratase	NA	NA	NA	NA	NA
AZX46714.1|1591075_1592332_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX46715.1|1592348_1594043_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX46716.1|1594200_1595088_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX46717.1|1595125_1596058_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX48855.1|1596071_1596560_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX46718.1|1596677_1597256_+|protease	protease	protease	NA	NA	NA	NA
AZX46719.1|1597328_1597730_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX46720.1|1597828_1598779_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	1653983	1725137	4104135	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZX46767.1|1653983_1654934_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46768.1|1654955_1656176_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX46769.1|1656361_1657774_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX46770.1|1657837_1658905_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX46771.1|1658901_1660392_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX48858.1|1660401_1661346_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46772.1|1661505_1662204_+	pirin family protein	NA	NA	NA	NA	NA
AZX46773.1|1662281_1663187_+	pirin family protein	NA	NA	NA	NA	NA
AZX46774.1|1663206_1664157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46775.1|1664255_1665050_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX46776.1|1665054_1666725_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX46777.1|1666848_1667898_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46778.1|1668219_1668996_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX46779.1|1669060_1669963_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46780.1|1671256_1672060_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX46781.1|1674753_1675140_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX46782.1|1675155_1677246_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZX46783.1|1677297_1678251_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX48859.1|1678265_1679153_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46784.1|1679290_1680817_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX48860.1|1680915_1681416_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX46785.1|1681739_1683695_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX46786.1|1683862_1685947_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46787.1|1685973_1686759_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX46788.1|1687614_1688385_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX46789.1|1688384_1689125_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX46790.1|1689166_1690336_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX46791.1|1690367_1692452_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX46792.1|1692448_1693339_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX46793.1|1693335_1694433_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX46794.1|1694455_1695745_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX46795.1|1695756_1696782_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX46796.1|1696778_1698836_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX46797.1|1698849_1700025_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX46798.1|1700106_1701057_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46799.1|1701115_1701889_+	oxidoreductase	NA	NA	NA	NA	NA
AZX46800.1|1701881_1703438_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX46801.1|1703434_1704385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46802.1|1705711_1706314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46803.1|1706553_1707255_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX46804.1|1707248_1708031_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX46805.1|1708215_1709166_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46806.1|1709264_1710002_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX46807.1|1710191_1710950_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX46808.1|1710996_1711986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46809.1|1712163_1713132_-	transporter	NA	NA	NA	NA	NA
AZX46810.1|1714671_1715640_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX46811.1|1715648_1716590_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX46812.1|1717063_1718074_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48861.1|1718064_1719579_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX46813.1|1719575_1720922_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48862.1|1720924_1721959_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX46814.1|1722008_1723634_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX46815.1|1724186_1725137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	1745928	1807276	4104135	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZX46830.1|1745928_1746879_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48867.1|1747172_1747895_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX46831.1|1748333_1749521_-	MFS transporter	NA	NA	NA	NA	NA
AZX46832.1|1749524_1749905_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46833.1|1751624_1752596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX46834.1|1752609_1753323_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX46835.1|1753327_1754245_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46836.1|1754351_1754648_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46837.1|1754746_1755697_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46838.1|1756855_1759789_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX46839.1|1759788_1760133_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX46840.1|1760129_1761758_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX46841.1|1761754_1762234_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX46842.1|1762230_1762515_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX46843.1|1762511_1762838_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZX46844.1|1762993_1763944_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46845.1|1763987_1764530_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46846.1|1764627_1765476_+	hydrolase	NA	NA	NA	NA	NA
AZX46847.1|1765468_1765975_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX46848.1|1765971_1766973_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX46849.1|1766985_1767780_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX46850.1|1767828_1769730_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX46851.1|1769726_1770350_-	hypothetical protein	NA	NA	NA	NA	NA
AZX46852.1|1770476_1771601_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46853.1|1771918_1773586_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX46854.1|1773741_1774518_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX46855.1|1774602_1775601_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46856.1|1775597_1776371_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX46857.1|1777355_1778306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46858.1|1778329_1778794_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX46859.1|1778940_1780149_+	flavohemoprotein	NA	NA	NA	NA	NA
AZX46860.1|1780159_1780630_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX46861.1|1780748_1782038_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX46862.1|1784778_1785729_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX46863.1|1785827_1786844_-	folate-binding protein	NA	NA	NA	NA	NA
AZX46864.1|1787010_1788057_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX46865.1|1788053_1788680_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX46866.1|1788676_1789729_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX46867.1|1789778_1790549_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX46868.1|1790599_1791436_+	hypothetical protein	NA	NA	NA	NA	NA
AZX46869.1|1791631_1792372_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46870.1|1792446_1793190_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46871.1|1793851_1794625_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX46872.1|1795762_1797052_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX46873.1|1798662_1799910_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX46874.1|1799919_1801629_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX46875.1|1801625_1802564_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX46876.1|1802560_1803844_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX46877.1|1803847_1804330_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX46878.1|1804330_1805317_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX46879.1|1805489_1806209_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX46880.1|1806325_1807276_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	1988461	2058113	4104135	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
AZX47013.1|1988461_1991119_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX47014.1|1991196_1992399_-	MFS transporter	NA	NA	NA	NA	NA
AZX47015.1|1992395_1992908_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48875.1|1993030_1993369_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX47016.1|1993744_1994695_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47017.1|1994793_1995744_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47018.1|1995907_1997803_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX47019.1|1997916_1998084_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX47020.1|1998147_1998384_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX47021.1|1998752_1999952_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX47022.1|2001467_2002418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47023.1|2002869_2003871_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47024.1|2004043_2004901_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX47025.1|2004897_2006160_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX47026.1|2006260_2006635_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX47027.1|2006683_2007895_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX47028.1|2007979_2008750_+	spermidine synthase	NA	NA	NA	NA	NA
AZX47029.1|2008863_2009628_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48876.1|2009743_2010880_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX47030.1|2010876_2011683_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX47031.1|2013427_2014399_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX47032.1|2014555_2015068_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX47033.1|2015226_2016201_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47034.1|2017201_2017996_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX48877.1|2018021_2018828_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX47035.1|2018938_2019529_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX47036.1|2019539_2020718_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47037.1|2020820_2021195_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX47038.1|2021447_2022779_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX47039.1|2022845_2026076_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX47040.1|2027566_2028313_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX47041.1|2028397_2028859_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX47042.1|2028896_2029955_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX47043.1|2029917_2031747_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX47044.1|2031786_2032359_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX47045.1|2033783_2034695_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX47046.1|2034923_2036246_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX47047.1|2036605_2037241_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47048.1|2037200_2038151_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47049.1|2039021_2039894_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX47050.1|2039971_2041111_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47051.1|2041460_2042726_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX47052.1|2042731_2043259_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX47053.1|2043263_2044082_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX47054.1|2044081_2044804_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX47055.1|2044825_2045140_+	ferredoxin	NA	NA	NA	NA	NA
AZX47056.1|2045136_2046306_+	CoA transferase	NA	NA	NA	NA	NA
AZX47057.1|2046336_2047212_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX47058.1|2047208_2048528_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX47059.1|2048600_2049797_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX47060.1|2049807_2051295_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47061.1|2053889_2054789_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47062.1|2054926_2055892_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX47063.1|2055990_2056941_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47064.1|2056984_2057176_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47065.1|2057162_2058113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	2069609	2119005	4104135	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZX47077.1|2069609_2070560_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47078.1|2071697_2071994_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47079.1|2072168_2073521_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX47080.1|2073663_2074680_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX48879.1|2076659_2077673_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX47081.1|2077759_2078665_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47082.1|2078821_2079166_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47083.1|2079323_2079782_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX47084.1|2079795_2082012_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX47085.1|2082008_2083070_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47086.1|2083098_2084073_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX47087.1|2084024_2084843_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX47088.1|2084855_2085464_-	peptidase S16	NA	NA	NA	NA	NA
AZX47089.1|2085638_2086034_+	VOC family protein	NA	NA	NA	NA	NA
AZX47090.1|2086052_2087492_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX47091.1|2087520_2087868_+	GFA family protein	NA	NA	NA	NA	NA
AZX47092.1|2087886_2088837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47093.1|2089489_2090440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47094.1|2090523_2092341_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX47095.1|2092414_2093062_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47096.1|2093074_2094004_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX47097.1|2094173_2094638_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47098.1|2094885_2095566_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47099.1|2095614_2097306_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX47100.1|2097321_2097873_-	ATPase	NA	NA	NA	NA	NA
AZX47101.1|2097869_2098241_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX47102.1|2098353_2099190_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX47103.1|2099200_2099725_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX47104.1|2099822_2100002_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX47105.1|2100131_2101163_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX47106.1|2101236_2101593_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX48880.1|2101582_2102458_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX47107.1|2102556_2103441_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47108.1|2103462_2104758_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX47109.1|2105706_2106357_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX48881.1|2106444_2107965_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX47110.1|2108222_2110088_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX47111.1|2111133_2112084_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47112.1|2113056_2113416_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX47113.1|2113403_2114840_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX47114.1|2114836_2115490_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX47115.1|2115486_2116686_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX47116.1|2116783_2118058_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX47117.1|2118054_2119005_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	2130209	2263183	4104135	transposase,tRNA,protease	Klosneuvirus(12.5%)	113	NA	NA
AZX47131.1|2130209_2131160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47132.1|2131119_2131533_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX47133.1|2131817_2132117_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48883.1|2132526_2134695_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX47134.1|2135494_2137525_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX47135.1|2137544_2137757_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX47136.1|2138034_2138574_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX47137.1|2138687_2139995_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX47138.1|2140059_2141217_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX47139.1|2141400_2142300_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX47140.1|2142318_2143623_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX47141.1|2143588_2144695_-	GTPase HflX	NA	NA	NA	NA	NA
AZX47142.1|2144782_2145019_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX47143.1|2145157_2146228_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX47144.1|2146231_2147587_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX47145.1|2147613_2148774_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX47146.1|2148776_2149415_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47147.1|2149416_2150721_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX47148.1|2150761_2152057_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX47149.1|2152063_2152570_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX47150.1|2152566_2153715_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX47151.1|2153742_2154168_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX47152.1|2154490_2157373_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX47153.1|2157465_2158221_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX47154.1|2158986_2160336_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX47155.1|2160434_2161385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47156.1|2161483_2162434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47157.1|2162507_2162981_+	RidA family protein	NA	NA	NA	NA	NA
AZX47158.1|2163006_2164215_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX47159.1|2164211_2164985_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX47160.1|2164984_2165608_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX47161.1|2165773_2166034_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX47162.1|2166337_2166919_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47163.1|2166985_2167240_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX47164.1|2167226_2169851_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX47165.1|2169922_2170741_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47166.1|2170737_2171343_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZX47167.1|2171380_2172514_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZX48884.1|2174229_2174604_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47168.1|2174701_2175976_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47169.1|2175979_2177557_-	lipoprotein	NA	NA	NA	NA	NA
AZX47170.1|2178463_2179819_-	amidase	NA	NA	NA	NA	NA
AZX47171.1|2179815_2181450_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZX47172.1|2181442_2182273_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX47173.1|2182290_2183235_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX47174.1|2183287_2184862_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47175.1|2184909_2185260_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47176.1|2186732_2187689_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47177.1|2187838_2189176_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47178.1|2189180_2190437_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX47179.1|2190632_2191679_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZX47180.1|2191736_2192105_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZX47181.1|2192235_2193108_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX47182.1|2193184_2194087_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47183.1|2195143_2196361_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZX47184.1|2197634_2198585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47185.1|2198785_2199595_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX47186.1|2199719_2200670_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47187.1|2200666_2201560_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX47188.1|2201684_2201879_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX47189.1|2201878_2202220_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX47190.1|2202229_2204092_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX47191.1|2204221_2204734_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX47192.1|2204736_2205060_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX47193.1|2205061_2205472_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX47194.1|2205509_2206721_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX47195.1|2206738_2207251_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX47196.1|2207466_2207958_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX47197.1|2208210_2210247_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX47198.1|2210324_2211527_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX47199.1|2211577_2212306_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX47200.1|2213863_2214814_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47201.1|2215384_2215597_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47202.1|2215614_2216346_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47203.1|2216380_2217022_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX47204.1|2217014_2217731_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX47205.1|2219895_2220672_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX47206.1|2220693_2221851_-	thiolase	NA	NA	NA	NA	NA
AZX47207.1|2221847_2222279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47208.1|2222275_2223079_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX47209.1|2223092_2223548_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX47210.1|2223560_2224532_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX47211.1|2224597_2225821_-	CoA transferase	NA	NA	NA	NA	NA
AZX47212.1|2226048_2226999_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47213.1|2227122_2229576_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX47214.1|2229764_2231069_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX47215.1|2231173_2231827_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX47216.1|2231829_2233140_-	trigger factor	NA	NA	NA	NA	NA
AZX47217.1|2233318_2233897_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX47218.1|2234008_2234209_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX47219.1|2234554_2235121_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX47220.1|2235204_2235408_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX47221.1|2235714_2236035_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47222.1|2236076_2236358_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47223.1|2236432_2237689_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX47224.1|2238071_2238401_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX47225.1|2239971_2240793_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX47226.1|2240792_2241932_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX47227.1|2241938_2242835_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX47228.1|2242831_2244757_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX47229.1|2245116_2247729_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX47230.1|2247781_2250082_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX47231.1|2250078_2251287_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX47232.1|2251548_2251923_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47233.1|2251919_2252870_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47234.1|2252968_2254963_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX47235.1|2255022_2255988_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX47236.1|2255977_2258839_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX47237.1|2258841_2259348_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX47238.1|2259452_2260661_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX47239.1|2260662_2261601_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47240.1|2261762_2262236_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX47241.1|2262232_2263183_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	2348311	2411889	4104135	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
AZX47318.1|2348311_2349262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47319.1|2349563_2350040_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZX47320.1|2350663_2352301_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZX47321.1|2352331_2353645_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZX47322.1|2353778_2354096_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47323.1|2354196_2355519_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47324.1|2355515_2356466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47325.1|2356564_2357515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47326.1|2358044_2359067_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47327.1|2359095_2359926_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZX48893.1|2359942_2361640_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX47328.1|2361704_2362781_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZX47329.1|2362940_2363804_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX47330.1|2363834_2364404_+	phosphohydrolase	NA	NA	NA	NA	NA
AZX47331.1|2364420_2365272_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX47332.1|2366329_2367211_+|protease	protease HtpX	protease	NA	NA	NA	NA
AZX47333.1|2367285_2368275_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZX47334.1|2368337_2369288_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX47335.1|2369350_2370208_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX47336.1|2370267_2370756_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47337.1|2372304_2373519_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX47338.1|2373515_2375102_+	multidrug resistance protein	NA	NA	NA	NA	NA
AZX47339.1|2375120_2376188_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZX47340.1|2376292_2377837_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZX47341.1|2378256_2379831_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47342.1|2379938_2380955_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX47343.1|2380951_2381791_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX47344.1|2381795_2383433_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZX47345.1|2383429_2384380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47346.1|2384522_2385797_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZX47347.1|2385793_2386117_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX48894.1|2386189_2387203_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZX47348.1|2387222_2388485_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX47349.1|2388487_2389411_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX47350.1|2389407_2390901_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX47351.1|2390911_2391844_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX47352.1|2392025_2393351_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZX47353.1|2393385_2394741_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZX47354.1|2394801_2396400_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZX47355.1|2396476_2397208_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX47356.1|2397242_2398616_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZX47357.1|2398631_2399543_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZX47358.1|2399533_2400127_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZX47359.1|2400188_2400575_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZX47360.1|2400586_2401057_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZX47361.1|2401068_2401692_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZX47362.1|2401712_2404460_-	autotransporter Vag8	NA	NA	NA	NA	NA
AZX47363.1|2410736_2410952_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47364.1|2410938_2411889_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	2683875	2724544	4104135	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
AZX47595.1|2683875_2684826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47596.1|2684936_2685119_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47597.1|2685218_2685815_-	lipoprotein	NA	NA	NA	NA	NA
AZX47598.1|2685998_2687090_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47599.1|2687589_2688000_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47600.1|2688058_2688400_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX47601.1|2688405_2690823_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX47602.1|2690835_2691858_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX47603.1|2691932_2692292_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX47604.1|2692307_2692505_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX47605.1|2692840_2693791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47606.1|2693777_2693966_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47607.1|2693985_2694435_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX47608.1|2694431_2695382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47609.1|2695492_2696941_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX47610.1|2697055_2697337_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47611.1|2697440_2698391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47612.1|2698635_2699349_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX47613.1|2699471_2699699_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX47614.1|2699993_2700632_-	DedA family protein	NA	NA	NA	NA	NA
AZX47615.1|2700704_2701775_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX47616.1|2701771_2702722_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47617.1|2703137_2703662_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX47618.1|2703665_2703935_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47619.1|2704133_2705195_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX47620.1|2705278_2706913_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX47621.1|2706914_2707718_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX47622.1|2707746_2708706_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX47623.1|2708709_2710224_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47624.1|2710260_2711265_-	peptidase M20	NA	NA	NA	NA	NA
AZX47625.1|2711696_2712167_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX47626.1|2712202_2712814_-	LysE family translocator	NA	NA	NA	NA	NA
AZX47627.1|2712844_2713468_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX47628.1|2713548_2715081_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX47629.1|2715115_2716357_-	MFS transporter	NA	NA	NA	NA	NA
AZX47630.1|2716400_2717432_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX47631.1|2717428_2718598_-	amine oxidase	NA	NA	NA	NA	NA
AZX47632.1|2718591_2719272_-	anti-sigma factor	NA	NA	NA	NA	NA
AZX47633.1|2719433_2720276_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47634.1|2720438_2721410_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX47635.1|2721581_2722460_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX47636.1|2722482_2723553_-	FUSC family protein	NA	NA	NA	NA	NA
AZX47637.1|2723593_2724544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	2780009	2852879	4104135	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
AZX47681.1|2780009_2780426_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX47682.1|2780536_2781169_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX47683.1|2781197_2781641_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX47684.1|2781662_2782754_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47685.1|2782808_2783609_-	aldolase	NA	NA	NA	NA	NA
AZX47686.1|2783744_2784365_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX47687.1|2784504_2784978_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47688.1|2786117_2787068_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47689.1|2787064_2794726_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX47690.1|2794966_2799013_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX47691.1|2799325_2799907_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX47692.1|2799903_2801202_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX47693.1|2801281_2802310_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX47694.1|2802233_2802584_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47695.1|2802570_2803521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47696.1|2803517_2804468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47697.1|2804784_2805390_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX47698.1|2805443_2806757_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX47699.1|2806831_2807302_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX47700.1|2807301_2808090_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX47701.1|2808100_2809753_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX47702.1|2809840_2810791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48909.1|2811952_2812459_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX47703.1|2812455_2813220_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX47704.1|2813235_2813520_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX47705.1|2813584_2814574_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX47706.1|2814745_2815675_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX47707.1|2815646_2816333_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX47708.1|2816366_2816912_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX47709.1|2816956_2818222_+	peptidase M48	NA	NA	NA	NA	NA
AZX47710.1|2818218_2819121_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX47711.1|2820302_2821247_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX47712.1|2821341_2822859_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47713.1|2822900_2824529_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX47714.1|2824636_2825518_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47715.1|2828630_2829005_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX47716.1|2829029_2829368_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX47717.1|2829411_2831046_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX47718.1|2831084_2832431_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX48910.1|2832538_2833960_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX47719.1|2834029_2834614_-	nitroreductase	NA	NA	NA	NA	NA
AZX47720.1|2834716_2835667_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47721.1|2835801_2836908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47722.1|2836918_2838016_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX47723.1|2838160_2839366_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX47724.1|2839372_2839894_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX47725.1|2839890_2840382_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX47726.1|2840378_2840630_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX47727.1|2840610_2841096_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX47728.1|2841231_2844693_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47729.1|2844689_2845595_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX47730.1|2845604_2846036_-	lipoprotein	NA	NA	NA	NA	NA
AZX48911.1|2846282_2846786_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX47731.1|2846797_2848264_+	MFS transporter	NA	NA	NA	NA	NA
AZX47732.1|2848338_2849214_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48912.1|2849210_2850218_-	biotin synthase	NA	NA	NA	NA	NA
AZX47733.1|2850685_2850991_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX47734.1|2851081_2851672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47735.1|2851862_2852879_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	2856022	2922832	4104135	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZX47738.1|2856022_2856973_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47739.1|2857071_2858022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47740.1|2858018_2858813_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX47741.1|2858844_2859549_-	oxidoreductase	NA	NA	NA	NA	NA
AZX47742.1|2859623_2860424_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX47743.1|2860420_2860828_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX47744.1|2860824_2861466_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX47745.1|2861458_2863480_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX47746.1|2864719_2866051_+	MFS transporter	NA	NA	NA	NA	NA
AZX47747.1|2866047_2866998_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47748.1|2868704_2869010_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47749.1|2869678_2870017_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX47750.1|2874569_2875172_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX47751.1|2875268_2876558_+	MFS transporter	NA	NA	NA	NA	NA
AZX47752.1|2876615_2877347_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX47753.1|2877343_2878147_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX47754.1|2878143_2879232_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX47755.1|2879228_2880158_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX47756.1|2880306_2881452_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47757.1|2881473_2882424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47758.1|2882754_2886576_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX47759.1|2886732_2887401_-	lipoprotein	NA	NA	NA	NA	NA
AZX47760.1|2887405_2889079_-	MCE family protein	NA	NA	NA	NA	NA
AZX47761.1|2889097_2890417_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX47762.1|2890421_2892773_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX48913.1|2892792_2894961_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX47763.1|2894957_2900147_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX47764.1|2900236_2900551_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX47765.1|2900778_2901024_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX47766.1|2901118_2901637_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX47767.1|2901736_2902942_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX47768.1|2903057_2904455_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX47769.1|2904571_2905150_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX47770.1|2905222_2906614_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX47771.1|2906781_2907732_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47772.1|2908012_2908633_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX47773.1|2908629_2909043_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX47774.1|2909039_2910083_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX47775.1|2910138_2910327_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47776.1|2910336_2911101_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX47777.1|2911191_2911848_+	adenylate kinase	NA	NA	NA	NA	NA
AZX47778.1|2911939_2912698_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX47779.1|2912723_2914325_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX47780.1|2914525_2915530_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX47781.1|2915630_2915894_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX47782.1|2916011_2916788_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX47783.1|2917378_2918329_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47784.1|2920712_2921825_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX47785.1|2921881_2922832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	2953218	2992407	4104135	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZX47814.1|2953218_2954169_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47815.1|2954155_2954401_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47816.1|2954289_2955186_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX47817.1|2957463_2959689_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX47818.1|2959853_2960942_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX47819.1|2960898_2961552_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX47820.1|2961599_2962397_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47821.1|2962928_2963879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47822.1|2963959_2965108_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX47823.1|2965164_2966115_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47824.1|2966101_2966320_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47825.1|2966213_2966519_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX47826.1|2966547_2966982_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX47827.1|2966983_2968228_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX47828.1|2968224_2968935_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48915.1|2968949_2969861_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX47829.1|2970223_2970628_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47830.1|2970624_2971083_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47831.1|2971089_2971998_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48916.1|2971994_2972861_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX47832.1|2972847_2973675_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX47833.1|2973685_2974813_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX47834.1|2975890_2977129_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47835.1|2977170_2978433_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX47836.1|2978439_2979192_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX47837.1|2979243_2979429_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47838.1|2979704_2980169_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX47839.1|2980200_2980860_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX47840.1|2981004_2983113_+	AsmA family protein	NA	NA	NA	NA	NA
AZX47841.1|2983109_2984060_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47842.1|2984163_2984784_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48917.1|2984887_2985628_+	oxidoreductase	NA	NA	NA	NA	NA
AZX47843.1|2986762_2987887_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47844.1|2987932_2988301_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47845.1|2988542_2989493_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX47846.1|2990528_2991071_-	hypothetical protein	NA	NA	NA	NA	NA
AZX47847.1|2991275_2991470_+	hypothetical protein	NA	NA	NA	NA	NA
AZX47848.1|2991456_2992407_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	3181326	3242356	4104135	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZX48000.1|3181326_3182277_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48001.1|3182285_3182834_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZX48002.1|3182830_3183439_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX48003.1|3183621_3184092_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX48004.1|3184098_3185358_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX48005.1|3185410_3186223_-	oxidoreductase	NA	NA	NA	NA	NA
AZX48006.1|3186337_3186892_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX48007.1|3186901_3187891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX48008.1|3188070_3188790_-	VOC family protein	NA	NA	NA	NA	NA
AZX48009.1|3188806_3191542_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZX48932.1|3191721_3192708_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZX48010.1|3192749_3193244_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZX48011.1|3193355_3194279_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZX48012.1|3194507_3195692_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZX48013.1|3195880_3197107_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZX48014.1|3197111_3197933_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZX48015.1|3197945_3198896_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZX48016.1|3198892_3200299_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZX48017.1|3200295_3201369_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZX48018.1|3201365_3202559_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZX48019.1|3202555_3204088_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZX48020.1|3204084_3205254_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZX48021.1|3205243_3208081_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
AZX48933.1|3208077_3209778_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZX48022.1|3209804_3210083_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZX48023.1|3210082_3211177_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZX48024.1|3211185_3211677_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZX48025.1|3212416_3214225_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZX48026.1|3214264_3215344_-	dihydroorotase	NA	NA	NA	NA	NA
AZX48027.1|3215340_3216534_-	amidohydrolase	NA	NA	NA	NA	NA
AZX48028.1|3216683_3216962_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZX48029.1|3217291_3217684_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48934.1|3224408_3224885_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX48030.1|3225037_3226150_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZX48031.1|3226217_3226778_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZX48032.1|3226801_3227134_-	cytochrome C	NA	NA	NA	NA	NA
AZX48033.1|3227117_3228806_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX48034.1|3228925_3229714_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZX48035.1|3230421_3231372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48036.1|3231816_3232128_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX48037.1|3232127_3232658_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48038.1|3232820_3233771_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48039.1|3233869_3234820_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48040.1|3235109_3235574_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX48041.1|3235588_3237094_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX48042.1|3237347_3238955_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX48043.1|3239010_3239916_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX48044.1|3240356_3241307_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48045.1|3241405_3242356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	3264081	3303545	4104135	holin,transposase	Tupanvirus(16.67%)	37	NA	NA
AZX48067.1|3264081_3264417_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX48068.1|3264416_3265259_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX48069.1|3265357_3266308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48070.1|3266406_3267357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48071.1|3267421_3268393_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48072.1|3268456_3269476_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZX48937.1|3269477_3270851_-	MFS transporter	NA	NA	NA	NA	NA
AZX48073.1|3271128_3271809_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZX48074.1|3271821_3273948_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZX48075.1|3273944_3275039_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZX48076.1|3275053_3276313_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX48077.1|3276332_3278057_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZX48078.1|3278295_3279048_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZX48079.1|3279186_3280137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48938.1|3280449_3281928_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX48080.1|3281934_3283044_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX48081.1|3283055_3283736_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX48082.1|3283757_3284513_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX48939.1|3284648_3285533_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX48083.1|3285620_3286202_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48084.1|3286294_3286417_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48085.1|3286462_3286762_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX48940.1|3286913_3287339_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48086.1|3289545_3290049_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX48087.1|3290064_3291015_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48088.1|3291001_3291199_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48089.1|3291542_3292316_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX48090.1|3292448_3293459_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX48091.1|3293610_3295266_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX48092.1|3295320_3295662_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX48093.1|3295675_3297115_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX48094.1|3297247_3298063_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48095.1|3298081_3298270_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48096.1|3298256_3299207_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48097.1|3300594_3301542_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48098.1|3301768_3302509_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48099.1|3302594_3303545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	3378952	3432693	4104135	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZX48151.1|3378952_3379903_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48152.1|3380307_3380952_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX48153.1|3380976_3381561_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX48154.1|3381661_3382279_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX48155.1|3382281_3383997_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX48156.1|3383993_3384302_-	urease subunit beta	NA	NA	NA	NA	NA
AZX48157.1|3384318_3384954_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX48158.1|3384980_3385283_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX48159.1|3385383_3386238_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX48160.1|3386819_3387092_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX48161.1|3387509_3387917_-	GFA family protein	NA	NA	NA	NA	NA
AZX48162.1|3388286_3389081_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48163.1|3389181_3390417_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX48164.1|3390485_3391502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX48165.1|3391498_3392890_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX48166.1|3392886_3394083_+	MFS transporter	NA	NA	NA	NA	NA
AZX48167.1|3394079_3395618_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX48168.1|3395614_3396874_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48169.1|3398814_3399765_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48170.1|3400531_3401626_-	CoA transferase	NA	NA	NA	NA	NA
AZX48171.1|3401618_3402953_-	CoA ligase	NA	NA	NA	NA	NA
AZX48172.1|3402906_3403590_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48173.1|3403615_3404779_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX48174.1|3404775_3405777_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX48175.1|3405776_3406649_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX48176.1|3406645_3407395_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX48177.1|3407391_3408183_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX48178.1|3408179_3409319_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX48179.1|3409627_3410380_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX48180.1|3410413_3411196_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX48181.1|3411199_3411589_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX48182.1|3412728_3413592_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX48183.1|3413627_3414716_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48184.1|3414712_3415663_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48185.1|3415649_3416018_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48186.1|3416016_3418995_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48187.1|3419921_3420800_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX48188.1|3422748_3423699_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48189.1|3423695_3424163_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX48190.1|3424205_3424976_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX48191.1|3424996_3425797_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX48192.1|3425807_3427217_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX48193.1|3427311_3428097_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX48944.1|3428336_3429353_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX48194.1|3429460_3429853_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX48195.1|3429990_3430671_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX48196.1|3430675_3431674_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX48197.1|3431742_3432693_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	3438848	3498148	4104135	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZX48201.1|3438848_3440612_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX48202.1|3440723_3441602_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX48203.1|3441714_3442530_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX48204.1|3442533_3442785_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX48205.1|3442869_3443886_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX48206.1|3444216_3444438_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48207.1|3446798_3447716_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX48208.1|3448213_3449422_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX48209.1|3449501_3451073_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX48210.1|3451190_3452126_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX48211.1|3452314_3453259_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX48212.1|3453327_3453543_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48213.1|3453826_3459544_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX48214.1|3459549_3460677_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX48215.1|3460732_3461359_+	aminotransferase	NA	NA	NA	NA	NA
AZX48945.1|3461630_3462647_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX48216.1|3462742_3463453_-	oxidoreductase	NA	NA	NA	NA	NA
AZX48946.1|3463449_3464439_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX48217.1|3464570_3466166_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX48218.1|3466168_3466906_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48219.1|3467061_3467934_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX48220.1|3468202_3469423_+	MFS transporter	NA	NA	NA	NA	NA
AZX48221.1|3469419_3470079_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX48222.1|3470150_3470783_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX48223.1|3470812_3471331_+	flavin reductase	NA	NA	NA	NA	NA
AZX48224.1|3471341_3472451_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX48225.1|3472497_3473352_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX48226.1|3473353_3474256_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48227.1|3475478_3476429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48228.1|3478185_3479175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48229.1|3479350_3480139_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX48230.1|3480135_3481167_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX48231.1|3481185_3481749_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX48232.1|3481804_3483325_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX48233.1|3483588_3484293_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX48234.1|3484300_3485038_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX48235.1|3485143_3485518_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX48236.1|3485560_3486850_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48237.1|3486846_3488016_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX48238.1|3488012_3488852_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX48239.1|3488911_3489847_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX48240.1|3489859_3490810_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48241.1|3490908_3491871_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX48242.1|3491902_3492262_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX48243.1|3492386_3493289_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX48244.1|3493290_3495063_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX48245.1|3495097_3495874_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX48246.1|3497197_3498148_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025365	Bordetella pertussis strain H697 chromosome, complete genome	4104135	3513086	3571159	4104135	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZX48258.1|3513086_3514037_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48259.1|3514165_3515299_-	peptidase	NA	NA	NA	NA	NA
AZX48260.1|3515342_3516248_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX48261.1|3516250_3517951_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX48262.1|3517947_3518868_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX48263.1|3518875_3519853_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX48264.1|3519911_3520946_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX48265.1|3522920_3523157_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48266.1|3523283_3524147_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX48267.1|3524235_3525057_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX48268.1|3525136_3525874_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX48269.1|3525870_3526863_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX48270.1|3526976_3527639_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48271.1|3527683_3528832_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX48272.1|3531155_3532106_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48273.1|3532446_3533397_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48274.1|3533495_3534446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48275.1|3534742_3535240_+	hypothetical protein	NA	NA	NA	NA	NA
AZX48276.1|3535282_3537058_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX48949.1|3537104_3537932_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX48277.1|3537938_3538673_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX48278.1|3539842_3540637_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX48279.1|3540926_3541517_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX48280.1|3541550_3542879_-	amidase	NA	NA	NA	NA	NA
AZX48281.1|3542953_3544099_-	transporter	NA	NA	NA	NA	NA
AZX48282.1|3544210_3545209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48283.1|3545171_3545606_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX48284.1|3547122_3548007_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX48285.1|3548003_3549209_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX48286.1|3549205_3550066_-	endonuclease	NA	NA	NA	NA	NA
AZX48287.1|3550178_3551969_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX48288.1|3552009_3552675_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX48289.1|3552675_3552984_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX48950.1|3553149_3554436_-	hypothetical protein	NA	NA	NA	NA	NA
AZX48290.1|3555869_3556820_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX48291.1|3558771_3559986_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX48292.1|3560091_3561081_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX48293.1|3561077_3561686_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX48294.1|3561698_3562328_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX48295.1|3562324_3562945_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX48296.1|3562976_3563768_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX48297.1|3564610_3565075_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX48298.1|3565093_3566020_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX48299.1|3566073_3567360_-	cytochrome c	NA	NA	NA	NA	NA
AZX48300.1|3568290_3569163_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX48301.1|3569159_3570110_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX48302.1|3570208_3571159_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
