The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	0	122073	4085512	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZX27406.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX27407.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX27408.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX27409.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX27410.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX27411.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX27412.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX27413.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX27414.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX27415.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX27416.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX27417.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX27418.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX27419.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX30775.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX27420.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27421.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX27422.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX27423.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27424.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX27425.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27426.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX27427.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX30776.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27428.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX27429.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX27430.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27431.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX27432.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX27433.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX27434.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX27435.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX27436.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX27437.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX27438.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX27439.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX27440.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27441.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27442.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX27443.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27444.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX27445.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX27446.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27447.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX27448.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX27449.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX27450.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX27451.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX27452.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX27453.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27454.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX27455.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX27456.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27457.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27458.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX27459.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX27460.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX27461.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX27462.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27463.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27464.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX27465.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX27466.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX27467.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX27468.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30777.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27469.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX27470.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30778.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27471.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX27472.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX27473.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX27474.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX27475.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX27476.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX27477.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX27478.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX27479.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX27480.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX27481.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX27482.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX27483.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27484.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX27485.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX27486.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX27487.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX27488.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27489.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX27490.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX27491.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX27492.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX27493.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX27494.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX27495.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX27496.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX27497.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX27498.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27499.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX27500.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX27501.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX27502.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX30779.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX27503.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30780.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX27504.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX27505.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX27506.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX27507.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX27508.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX27509.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	164892	225403	4085512	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX27540.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27541.1|167286_168189_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27542.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
AZX27543.1|169126_170509_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX27544.1|170542_171172_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX27545.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX27546.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30786.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
AZX27547.1|174300_175251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27548.1|176366_176894_+	lipoprotein	NA	NA	NA	NA	NA
AZX27549.1|176985_177801_+	lipoprotein	NA	NA	NA	NA	NA
AZX27550.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX27551.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX27552.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27553.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX27554.1|182424_184329_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX27555.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX27556.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX27557.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AZX27558.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX30787.1|189529_189976_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX27559.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27560.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX27561.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX27562.1|194404_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27563.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX27564.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX27565.1|197377_198478_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX27566.1|198559_198934_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX27567.1|198993_201858_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX27568.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27569.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
AZX27570.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX27571.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27572.1|206741_207065_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX27573.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
AZX27574.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX27575.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
AZX27576.1|209362_209638_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX27577.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX27578.1|210338_211025_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX30788.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27579.1|212056_212782_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX27580.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX27581.1|214274_215207_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX27582.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX27583.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX27584.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX27585.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX27586.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX27587.1|224452_225403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	233335	286923	4085512	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZX27595.1|233335_234286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27596.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27597.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27598.1|236368_237166_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX27599.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX27600.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27601.1|240334_241378_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX27602.1|241548_243651_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27603.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX27604.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX27605.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX27606.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX27607.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX27608.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX27609.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX27610.1|251622_253512_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX27611.1|253598_254237_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30789.1|254379_255624_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX27612.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX27613.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX27614.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
AZX27615.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX27616.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27617.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX27618.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
AZX27619.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX27620.1|265572_266523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27621.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27622.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX27623.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX27624.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX27625.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX27626.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX27627.1|274099_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX27628.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX27629.1|277139_278090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27630.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27631.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX27632.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27633.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX27634.1|279654_280266_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX27635.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
AZX27636.1|281298_282681_-	cytochrome b	NA	NA	NA	NA	NA
AZX27637.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX27638.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX27639.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX30790.1|284839_285976_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX27640.1|285972_286923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	555308	614608	4085512	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZX27862.1|555308_556259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27863.1|557582_558359_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX27864.1|558393_560166_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX27865.1|560167_561070_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX27866.1|561194_561554_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX27867.1|561585_562548_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX27868.1|562646_563597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27869.1|563609_564545_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX27870.1|564604_565444_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX27871.1|565440_566610_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX27872.1|566606_567896_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27873.1|567938_568313_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX27874.1|568418_569156_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX27875.1|569163_569868_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX27876.1|570131_571652_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX27877.1|571707_572271_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX27878.1|572289_573321_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX27879.1|573317_574106_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX27880.1|574281_575271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27881.1|577027_577978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27882.1|579200_580103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27883.1|580104_580959_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX27884.1|581005_582115_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX27885.1|582125_582644_-	flavin reductase	NA	NA	NA	NA	NA
AZX27886.1|582673_583306_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX27887.1|583377_584037_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX27888.1|584033_585254_-	MFS transporter	NA	NA	NA	NA	NA
AZX27889.1|585522_586395_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX27890.1|586550_587288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27891.1|587290_588886_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX30811.1|589017_590007_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX27892.1|590003_590714_+	oxidoreductase	NA	NA	NA	NA	NA
AZX30812.1|590809_591826_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX27893.1|592097_592724_-	aminotransferase	NA	NA	NA	NA	NA
AZX27894.1|592779_593907_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX27895.1|593912_599630_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX27896.1|599913_600129_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27897.1|600197_601142_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX27898.1|601330_602266_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX27899.1|602383_603955_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX27900.1|604034_605243_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX27901.1|605740_606658_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX27902.1|609018_609240_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30813.1|609570_610587_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX27903.1|610671_610923_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX27904.1|610926_611742_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX27905.1|611854_612733_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX27906.1|612844_614608_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	620763	674504	4085512	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZX27910.1|620763_621714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27911.1|621782_622781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX27912.1|622785_623466_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX27913.1|623603_623996_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX30814.1|624103_625120_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX27914.1|625359_626145_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX27915.1|626239_627649_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX27916.1|627659_628460_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX27917.1|628480_629251_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX27918.1|629293_629761_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX27919.1|629757_630708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27920.1|632656_633535_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX27921.1|634461_637440_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27922.1|637438_637807_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27923.1|637793_638744_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27924.1|638740_639829_-	hypothetical protein	NA	NA	NA	NA	NA
AZX27925.1|639864_640728_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX27926.1|641867_642257_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX27927.1|642260_643043_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX27928.1|643076_643829_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX27929.1|644137_645277_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX27930.1|645273_646065_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX27931.1|646061_646811_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX27932.1|646807_647680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX27933.1|647679_648681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX27934.1|648677_649841_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX27935.1|649866_650550_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27936.1|650503_651838_+	CoA ligase	NA	NA	NA	NA	NA
AZX27937.1|651830_652925_+	CoA transferase	NA	NA	NA	NA	NA
AZX30815.1|653691_654642_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX27938.1|656582_657842_+	hypothetical protein	NA	NA	NA	NA	NA
AZX27939.1|657838_659377_+	SpoVR family protein	NA	NA	NA	NA	NA
AZX27940.1|659373_660570_-	MFS transporter	NA	NA	NA	NA	NA
AZX27941.1|660566_661958_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX27942.1|661954_662971_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX27943.1|663039_664275_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX27944.1|664375_665170_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX27945.1|665539_665947_+	GFA family protein	NA	NA	NA	NA	NA
AZX27946.1|666364_666637_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX27947.1|667218_668073_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX27948.1|668173_668476_+	urease subunit gamma	NA	NA	NA	NA	NA
AZX27949.1|668502_669138_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX27950.1|669154_669463_+	urease subunit beta	NA	NA	NA	NA	NA
AZX27951.1|669459_671175_+	urease subunit alpha	NA	NA	NA	NA	NA
AZX27952.1|671177_671795_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX27953.1|671895_672480_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX27954.1|672504_673149_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX27955.1|673553_674504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	723391	763392	4085512	protease,transposase,tRNA,integrase	Pseudomonas_phage(33.33%)	32	720690:720708	740578:740596
720690:720708	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX27992.1|723391_724039_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX27993.1|724035_724818_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX27994.1|724890_725982_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX27995.1|726261_727389_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX27996.1|727730_728777_+	Fic family protein	NA	NA	NA	NA	NA
AZX30818.1|728787_728928_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX27997.1|728924_732044_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX27998.1|732045_734997_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX27999.1|735012_736224_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX28000.1|736220_736421_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28001.1|736407_737358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28002.1|737374_737869_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX28003.1|737872_738130_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28004.1|738154_739585_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX28005.1|739654_739951_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AZX28006.1|740734_741685_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
740578:740596	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX28007.1|742103_744668_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX28008.1|744712_746566_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28009.1|746898_748470_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX28010.1|749911_750862_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28011.1|750947_751688_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28012.1|751914_752862_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28013.1|754249_755200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28014.1|755186_755375_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28015.1|755393_756209_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28016.1|756341_757781_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX28017.1|757794_758136_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX28018.1|758190_759846_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX28019.1|759997_761008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX28020.1|761140_761914_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28021.1|762257_762455_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28022.1|762441_763392_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	773319	820937	4085512	transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZX28030.1|773319_774270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28031.1|774408_775161_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZX28032.1|775399_777124_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZX28033.1|777143_778403_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX28034.1|778417_779512_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZX28035.1|779508_781635_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZX28036.1|781647_782328_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZX30822.1|782605_783979_+	MFS transporter	NA	NA	NA	NA	NA
AZX28037.1|783980_785000_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZX28038.1|785063_786035_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28039.1|786099_787050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28040.1|787148_787991_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX28041.1|787990_788326_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX28042.1|788396_789815_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX28043.1|790094_791135_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX28044.1|791214_791466_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX28045.1|791576_792875_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX28046.1|793023_793878_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX28047.1|793874_794765_+	acyltransferase	NA	NA	NA	NA	NA
AZX28048.1|794807_795719_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX28049.1|795745_796438_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX28050.1|796452_797433_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX28051.1|797445_799587_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX28052.1|799635_800604_-	nickel transporter	NA	NA	NA	NA	NA
AZX30823.1|800594_801218_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX28053.1|801223_802159_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28054.1|802155_803052_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX28055.1|803048_803771_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX28056.1|803761_803962_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28057.1|804099_804603_+	transcriptional repressor	NA	NA	NA	NA	NA
AZX28058.1|804879_805995_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX28059.1|806137_806602_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX28060.1|806749_807289_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX28061.1|807310_808645_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX30824.1|808658_808964_-	RND transporter	NA	NA	NA	NA	NA
AZX28062.1|809388_809970_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX28063.1|810051_811002_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28064.1|811100_812051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28065.1|812491_813397_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX28066.1|813452_815060_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX28067.1|815313_816819_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX28068.1|816833_817298_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX28069.1|817587_818538_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28070.1|818700_819231_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28071.1|819230_819542_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZX28072.1|819986_820937_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	1005153	1099178	4085512	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZX28212.1|1005153_1006104_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28213.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28214.1|1006971_1007382_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28215.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
AZX28216.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
AZX28217.1|1009707_1010511_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX28218.1|1010591_1010888_+	histidine kinase	NA	NA	NA	NA	NA
AZX28219.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX30838.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX28220.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX28221.1|1013158_1014031_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28222.1|1014059_1014839_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX28223.1|1014872_1015670_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28224.1|1017121_1018294_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX28225.1|1018324_1018717_+	RidA family protein	NA	NA	NA	NA	NA
AZX28226.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX28227.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX30839.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX28228.1|1022863_1023814_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28229.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28230.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX28231.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX28232.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
AZX28233.1|1027462_1028365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28234.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28235.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
AZX28236.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX28237.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX28238.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX28239.1|1034555_1035104_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX28240.1|1035245_1036721_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX28241.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX28242.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX28243.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX28244.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX28245.1|1041058_1042069_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX28246.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
AZX28247.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX30840.1|1043910_1044861_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30841.1|1044842_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX28248.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX28249.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX28250.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28251.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX30842.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
AZX30843.1|1052712_1053462_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX28252.1|1053475_1054258_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX28253.1|1054450_1055401_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28254.1|1055462_1056608_-	porin	NA	NA	NA	NA	NA
AZX28255.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX28256.1|1057990_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28257.1|1058952_1059903_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28258.1|1059889_1060084_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28259.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28260.1|1061866_1062817_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28261.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28262.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30844.1|1065731_1066472_-	oxidoreductase	NA	NA	NA	NA	NA
AZX28263.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28264.1|1067299_1068250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28265.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
AZX28266.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX28267.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX28268.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28269.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX28270.1|1072926_1074189_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28271.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28272.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX28273.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX28274.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX28275.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28276.1|1081227_1082178_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30845.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX28277.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28278.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX28279.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX28280.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX28281.1|1086088_1086307_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28282.1|1086293_1087244_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28283.1|1087300_1088449_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX28284.1|1088529_1089480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28285.1|1089999_1090797_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28286.1|1090844_1091498_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX28287.1|1091454_1092543_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX28288.1|1092707_1094933_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX28289.1|1097210_1098107_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX28290.1|1097995_1098241_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28291.1|1098227_1099178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	1129564	1200535	4085512	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX28320.1|1129564_1130515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28321.1|1130571_1131684_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX28322.1|1134067_1135018_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28323.1|1135608_1136385_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX28324.1|1136502_1136766_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX28325.1|1136866_1137871_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX28326.1|1138071_1139673_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX28327.1|1139698_1140457_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX28328.1|1140548_1141205_-	adenylate kinase	NA	NA	NA	NA	NA
AZX28329.1|1141295_1142060_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX28330.1|1142069_1142258_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28331.1|1142313_1143357_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX28332.1|1143353_1143767_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX28333.1|1143763_1144384_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX28334.1|1144664_1145615_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28335.1|1145782_1147174_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX28336.1|1147246_1147825_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX28337.1|1147941_1149339_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX28338.1|1149454_1150660_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX28339.1|1150759_1151278_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX28340.1|1151372_1151618_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX28341.1|1151845_1152160_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX28342.1|1152249_1157439_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX30847.1|1157435_1159604_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX28343.1|1159623_1161975_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX28344.1|1161979_1163299_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX28345.1|1163317_1164991_+	MCE family protein	NA	NA	NA	NA	NA
AZX28346.1|1164995_1165664_+	lipoprotein	NA	NA	NA	NA	NA
AZX28347.1|1165820_1169642_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX28348.1|1169972_1170923_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28349.1|1170944_1172090_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28350.1|1172238_1173168_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX28351.1|1173164_1174253_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX28352.1|1174249_1175053_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX28353.1|1175049_1175781_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX28354.1|1175838_1177128_-	MFS transporter	NA	NA	NA	NA	NA
AZX28355.1|1177224_1177827_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28356.1|1182380_1182719_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX28357.1|1183387_1183693_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28358.1|1185399_1186350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28359.1|1186346_1187678_-	MFS transporter	NA	NA	NA	NA	NA
AZX28360.1|1188917_1190939_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX28361.1|1190931_1191573_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX28362.1|1191569_1191977_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX28363.1|1191973_1192774_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX28364.1|1192848_1193553_+	oxidoreductase	NA	NA	NA	NA	NA
AZX28365.1|1193584_1194379_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX28366.1|1194375_1195326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28367.1|1195424_1196375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28368.1|1196473_1196908_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX28369.1|1196990_1199327_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX30848.1|1199518_1200535_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	1300755	1357966	4085512	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX28447.1|1300755_1301706_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28448.1|1305452_1306064_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX28449.1|1306286_1307747_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX28450.1|1307843_1309436_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX28451.1|1309422_1309701_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28452.1|1309759_1310047_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX28453.1|1310048_1311389_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX28454.1|1311484_1312174_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28455.1|1312186_1313617_+	MFS transporter	NA	NA	NA	NA	NA
AZX28456.1|1315341_1316163_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28457.1|1316173_1317745_+	amidohydrolase	NA	NA	NA	NA	NA
AZX28458.1|1317773_1318751_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28459.1|1318777_1319581_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX28460.1|1319577_1320372_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX28461.1|1320379_1321615_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX28462.1|1321607_1322042_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX28463.1|1322791_1323742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28464.1|1324363_1326091_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX28465.1|1326202_1327561_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX28466.1|1327681_1327867_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28467.1|1327853_1328804_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28468.1|1328844_1329915_+	FUSC family protein	NA	NA	NA	NA	NA
AZX30854.1|1329937_1330816_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX28469.1|1330987_1331959_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX28470.1|1332121_1332964_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28471.1|1333125_1333806_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX28472.1|1333799_1334969_+	amine oxidase	NA	NA	NA	NA	NA
AZX28473.1|1334965_1335997_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX28474.1|1336040_1337282_+	MFS transporter	NA	NA	NA	NA	NA
AZX28475.1|1337316_1338849_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX28476.1|1338929_1339553_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX28477.1|1339583_1340195_+	LysE family translocator	NA	NA	NA	NA	NA
AZX28478.1|1340230_1340701_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX28479.1|1341132_1342137_+	peptidase M20	NA	NA	NA	NA	NA
AZX28480.1|1342173_1343688_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28481.1|1343691_1344651_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX28482.1|1344679_1345483_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX28483.1|1345484_1347119_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX28484.1|1347202_1348264_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX28485.1|1348462_1348732_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28486.1|1348735_1349260_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX28487.1|1349675_1350626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28488.1|1350622_1351693_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX28489.1|1351765_1352404_+	DedA family protein	NA	NA	NA	NA	NA
AZX28490.1|1352698_1352926_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX28491.1|1353048_1353762_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX28492.1|1354006_1354957_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28493.1|1355060_1355342_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28494.1|1355456_1356905_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX28495.1|1357015_1357966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	1448199	1500352	4085512	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZX28576.1|1448199_1449150_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28577.1|1449316_1449670_+	cytochrome C	NA	NA	NA	NA	NA
AZX28578.1|1449682_1450045_+	cytochrome	NA	NA	NA	NA	NA
AZX28579.1|1450086_1450512_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX28580.1|1450714_1451971_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX28581.1|1452169_1453150_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28582.1|1453299_1454541_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28583.1|1454639_1455590_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28584.1|1455598_1456294_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX28585.1|1459115_1459715_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX28586.1|1459725_1461891_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX28587.1|1461914_1463699_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX28588.1|1463698_1463788_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX28589.1|1464482_1464755_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX28590.1|1464754_1466821_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX28591.1|1466817_1467768_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28592.1|1467866_1468817_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28593.1|1468932_1469265_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX28594.1|1469261_1469948_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX28595.1|1469934_1470894_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX30863.1|1470935_1473296_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX28596.1|1473295_1473928_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX28597.1|1473990_1475370_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX28598.1|1475416_1476772_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX28599.1|1477050_1477299_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28600.1|1477486_1477804_-	virulence factor	NA	NA	NA	NA	NA
AZX28601.1|1478076_1478592_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX28602.1|1478685_1478847_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28603.1|1478862_1479618_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX28604.1|1479956_1480163_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28605.1|1480170_1480830_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX28606.1|1481124_1483329_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX28607.1|1483439_1484663_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX28608.1|1484785_1485760_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX28609.1|1485827_1487021_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX28610.1|1487035_1487836_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX28611.1|1487832_1489689_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX28612.1|1489685_1490291_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX28613.1|1490309_1491695_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX28614.1|1492420_1493647_+	transporter	NA	NA	NA	NA	NA
AZX28615.1|1493735_1494518_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX28616.1|1494616_1495567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28617.1|1495593_1496367_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX28618.1|1496378_1497620_+	MFS transporter	NA	NA	NA	NA	NA
AZX28619.1|1499401_1500352_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	1603237	1674391	4085512	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZX28716.1|1603237_1604188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28717.1|1604209_1605430_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX28718.1|1605615_1607028_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX28719.1|1607091_1608159_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX28720.1|1608155_1609646_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX30868.1|1609655_1610600_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28721.1|1610759_1611458_+	pirin family protein	NA	NA	NA	NA	NA
AZX28722.1|1611535_1612441_+	pirin family protein	NA	NA	NA	NA	NA
AZX28723.1|1612460_1613411_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28724.1|1613509_1614304_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX28725.1|1614308_1615979_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX28726.1|1616102_1617152_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28727.1|1617473_1618250_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX28728.1|1618314_1619217_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28729.1|1620510_1621314_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX28730.1|1624007_1624394_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX28731.1|1624409_1626500_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZX28732.1|1626551_1627505_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX30869.1|1627519_1628407_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28733.1|1628544_1630071_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX30870.1|1630169_1630670_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX28734.1|1630993_1632949_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX28735.1|1633116_1635201_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28736.1|1635227_1636013_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX28737.1|1636868_1637639_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX28738.1|1637638_1638379_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX28739.1|1638420_1639590_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX28740.1|1639621_1641706_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX28741.1|1641702_1642593_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX28742.1|1642589_1643687_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX28743.1|1643709_1644999_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX28744.1|1645010_1646036_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX28745.1|1646032_1648090_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX28746.1|1648103_1649279_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX28747.1|1649360_1650311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28748.1|1650369_1651143_+	oxidoreductase	NA	NA	NA	NA	NA
AZX28749.1|1651135_1652692_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX28750.1|1652688_1653639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28751.1|1654965_1655568_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28752.1|1655807_1656509_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX28753.1|1656502_1657285_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX28754.1|1657469_1658420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28755.1|1658518_1659256_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX28756.1|1659445_1660204_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX28757.1|1660250_1661240_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX28758.1|1661417_1662386_-	transporter	NA	NA	NA	NA	NA
AZX28759.1|1663925_1664894_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX28760.1|1664902_1665844_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX28761.1|1666317_1667328_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30871.1|1667318_1668833_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX28762.1|1668829_1670176_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30872.1|1670178_1671213_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX28763.1|1671262_1672888_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX28764.1|1673440_1674391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	1695182	1756530	4085512	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZX28779.1|1695182_1696133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30877.1|1696426_1697149_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX28780.1|1697587_1698775_-	MFS transporter	NA	NA	NA	NA	NA
AZX28781.1|1698778_1699159_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28782.1|1700878_1701850_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX28783.1|1701863_1702577_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX28784.1|1702581_1703499_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28785.1|1703605_1703902_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28786.1|1704000_1704951_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28787.1|1706109_1709043_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX28788.1|1709042_1709387_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX28789.1|1709383_1711012_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX28790.1|1711008_1711488_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX28791.1|1711484_1711769_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX28792.1|1711765_1712092_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZX28793.1|1712247_1713198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28794.1|1713241_1713784_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28795.1|1713881_1714730_+	hydrolase	NA	NA	NA	NA	NA
AZX28796.1|1714722_1715229_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX28797.1|1715225_1716227_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX28798.1|1716239_1717034_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX28799.1|1717082_1718984_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX28800.1|1718980_1719604_-	hypothetical protein	NA	NA	NA	NA	NA
AZX28801.1|1719730_1720855_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28802.1|1721172_1722840_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX28803.1|1722995_1723772_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX28804.1|1723856_1724855_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28805.1|1724851_1725625_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX28806.1|1726609_1727560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28807.1|1727583_1728048_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX28808.1|1728194_1729403_+	flavohemoprotein	NA	NA	NA	NA	NA
AZX28809.1|1729413_1729884_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX28810.1|1730002_1731292_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX28811.1|1734032_1734983_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28812.1|1735081_1736098_-	folate-binding protein	NA	NA	NA	NA	NA
AZX28813.1|1736264_1737311_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX28814.1|1737307_1737934_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX28815.1|1737930_1738983_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX28816.1|1739032_1739803_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX28817.1|1739853_1740690_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28818.1|1740885_1741626_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28819.1|1741700_1742444_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28820.1|1743105_1743879_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX28821.1|1745016_1746306_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX28822.1|1747916_1749164_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX28823.1|1749173_1750883_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX28824.1|1750879_1751818_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX28825.1|1751814_1753098_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX28826.1|1753101_1753584_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX28827.1|1753584_1754571_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28828.1|1754743_1755463_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX28829.1|1755579_1756530_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	1937715	2007367	4085512	transposase,tRNA	Staphylococcus_phage(16.67%)	57	NA	NA
AZX28960.1|1937715_1940373_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX28961.1|1940450_1941653_-	MFS transporter	NA	NA	NA	NA	NA
AZX28962.1|1941649_1942162_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30887.1|1942284_1942623_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX28963.1|1942998_1943949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28964.1|1944047_1944998_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28965.1|1945161_1947057_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX28966.1|1947170_1947338_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX28967.1|1947401_1947638_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX28968.1|1948006_1949206_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX28969.1|1950721_1951672_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28970.1|1952123_1953125_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28971.1|1953297_1954155_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX28972.1|1954151_1955414_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX28973.1|1955514_1955889_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX28974.1|1955937_1957149_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX28975.1|1957233_1958004_+	spermidine synthase	NA	NA	NA	NA	NA
AZX28976.1|1958117_1958882_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30888.1|1958997_1960134_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX28977.1|1960130_1960937_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX28978.1|1962681_1963653_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX28979.1|1963809_1964322_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX28980.1|1964480_1965455_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28981.1|1966455_1967250_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX30889.1|1967275_1968082_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX28982.1|1968192_1968783_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX28983.1|1968793_1969972_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28984.1|1970074_1970449_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX28985.1|1970701_1972033_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX28986.1|1972099_1975330_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX28987.1|1976820_1977567_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX28988.1|1977651_1978113_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX28989.1|1978150_1979209_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX28990.1|1979171_1981001_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX28991.1|1981040_1981613_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX28992.1|1983037_1983949_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX28993.1|1984177_1985500_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX28994.1|1985545_1985929_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28995.1|1985859_1986495_+	hypothetical protein	NA	NA	NA	NA	NA
AZX28996.1|1986454_1987405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX28997.1|1988275_1989148_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX28998.1|1989225_1990365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX28999.1|1990714_1991980_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX29000.1|1991985_1992513_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX29001.1|1992517_1993336_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX29002.1|1993335_1994058_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX29003.1|1994079_1994394_+	ferredoxin	NA	NA	NA	NA	NA
AZX29004.1|1994390_1995560_+	CoA transferase	NA	NA	NA	NA	NA
AZX29005.1|1995590_1996466_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX29006.1|1996462_1997782_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX29007.1|1997854_1999051_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX29008.1|1999061_2000549_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29009.1|2003143_2004043_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29010.1|2004180_2005146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29011.1|2005244_2006195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29012.1|2006238_2006430_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29013.1|2006416_2007367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	2018863	2068259	4085512	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZX29025.1|2018863_2019814_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29026.1|2020951_2021248_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29027.1|2021422_2022775_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX30891.1|2022917_2023934_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX30892.1|2025913_2026927_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX29028.1|2027013_2027919_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29029.1|2028075_2028420_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29030.1|2028577_2029036_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX29031.1|2029049_2031266_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX29032.1|2031262_2032324_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29033.1|2032352_2033327_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX29034.1|2033278_2034097_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX29035.1|2034109_2034718_-	peptidase S16	NA	NA	NA	NA	NA
AZX29036.1|2034892_2035288_+	VOC family protein	NA	NA	NA	NA	NA
AZX29037.1|2035306_2036746_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX29038.1|2036774_2037122_+	GFA family protein	NA	NA	NA	NA	NA
AZX29039.1|2037140_2038091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29040.1|2038743_2039694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29041.1|2039777_2041595_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX29042.1|2041668_2042316_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29043.1|2042328_2043258_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX29044.1|2043427_2043892_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29045.1|2044139_2044820_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29046.1|2044868_2046560_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX29047.1|2046575_2047127_-	ATPase	NA	NA	NA	NA	NA
AZX29048.1|2047123_2047495_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX29049.1|2047607_2048444_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX29050.1|2048454_2048979_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX29051.1|2049076_2049256_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX29052.1|2049385_2050417_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX29053.1|2050490_2050847_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX30893.1|2050836_2051712_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX29054.1|2051810_2052695_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29055.1|2052716_2054012_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX29056.1|2054960_2055611_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX30894.1|2055698_2057219_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX29057.1|2057476_2059342_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX29058.1|2060387_2061338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29059.1|2062310_2062670_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX29060.1|2062657_2064094_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX29061.1|2064090_2064744_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX29062.1|2064740_2065940_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX29063.1|2066037_2067312_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX29064.1|2067308_2068259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	2079463	2120154	4085512	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
AZX29078.1|2079463_2080414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29079.1|2080512_2081463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29080.1|2081422_2081836_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX29081.1|2082120_2082420_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30896.1|2082829_2084998_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX29082.1|2085797_2087828_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX29083.1|2087847_2088060_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX29084.1|2088337_2088877_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX29085.1|2088990_2090298_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX29086.1|2090362_2091520_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX29087.1|2091703_2092603_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX29088.1|2092621_2093926_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX29089.1|2093891_2094998_-	GTPase HflX	NA	NA	NA	NA	NA
AZX29090.1|2095085_2095322_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX29091.1|2095460_2096531_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX29092.1|2096534_2097890_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX29093.1|2097916_2099077_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX29094.1|2099079_2099718_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29095.1|2099719_2101024_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX29096.1|2101064_2102360_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX29097.1|2102366_2102873_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX29098.1|2102869_2104018_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX29099.1|2104045_2104471_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX29100.1|2104793_2107676_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX29101.1|2107768_2108524_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX29102.1|2109289_2110639_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX29103.1|2110737_2111688_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29104.1|2111786_2112737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29105.1|2112810_2113284_+	RidA family protein	NA	NA	NA	NA	NA
AZX29106.1|2113309_2114518_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX29107.1|2114514_2115288_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX29108.1|2115287_2115911_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX29109.1|2116076_2116337_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX29110.1|2116640_2117222_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29111.1|2117288_2117543_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX29112.1|2117529_2120154_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	2147937	2209142	4085512	protease,transposase,tRNA	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX29132.1|2147937_2148888_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29133.1|2149088_2149898_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX29134.1|2150022_2150973_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29135.1|2150969_2151863_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX29136.1|2151987_2152182_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX29137.1|2152181_2152523_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX29138.1|2152532_2154395_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX29139.1|2154524_2155037_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX29140.1|2155039_2155363_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX29141.1|2155364_2155775_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX29142.1|2155812_2157024_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX29143.1|2157041_2157554_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX29144.1|2157769_2158261_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX29145.1|2158513_2160550_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX29146.1|2160627_2161830_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX29147.1|2161880_2162609_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX29148.1|2164166_2165117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29149.1|2165687_2165900_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29150.1|2165917_2166649_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29151.1|2166683_2167325_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX29152.1|2167317_2168034_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX29153.1|2170198_2170975_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX29154.1|2170996_2172154_-	thiolase	NA	NA	NA	NA	NA
AZX29155.1|2172150_2172582_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29156.1|2172578_2173382_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX29157.1|2173395_2173851_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX29158.1|2173863_2174835_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29159.1|2174900_2176124_-	CoA transferase	NA	NA	NA	NA	NA
AZX29160.1|2176351_2177302_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29161.1|2177425_2179879_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX29162.1|2180067_2181372_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX29163.1|2181476_2182130_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX29164.1|2182132_2183443_-	trigger factor	NA	NA	NA	NA	NA
AZX29165.1|2183621_2184200_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX29166.1|2184311_2184512_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX29167.1|2184857_2185424_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX29168.1|2185507_2185711_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX29169.1|2186017_2186338_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29170.1|2186379_2186661_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29171.1|2186735_2187992_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX29172.1|2188374_2188704_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX29173.1|2190274_2191096_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX29174.1|2191095_2192235_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX29175.1|2192241_2193138_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX29176.1|2193134_2195060_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX29177.1|2195419_2198032_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX29178.1|2198084_2200385_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX29179.1|2200381_2201590_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX29180.1|2201851_2202226_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29181.1|2202222_2203173_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29182.1|2203271_2205266_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX29183.1|2205325_2206291_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX29184.1|2206280_2209142_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
>prophage 20
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	2606608	2673108	4085512	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX29523.1|2606608_2607559_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29524.1|2607928_2608501_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX29525.1|2608503_2609514_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX29526.1|2609506_2610007_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX29527.1|2610017_2610359_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX29528.1|2610370_2611162_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX29529.1|2611178_2611448_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX29530.1|2611470_2612259_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX30916.1|2612305_2613322_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX29531.1|2613538_2614981_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX29532.1|2615159_2616779_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX29533.1|2616899_2618720_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX29534.1|2618798_2620331_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX29535.1|2620364_2622011_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX29536.1|2622080_2623103_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX29537.1|2623120_2624254_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX29538.1|2624256_2624946_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX29539.1|2624945_2625731_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX29540.1|2625774_2626539_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX29541.1|2626577_2627999_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX29542.1|2628064_2628769_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX29543.1|2628816_2629236_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX29544.1|2629248_2629656_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX30917.1|2629839_2630550_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX29545.1|2630676_2630967_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX29546.1|2630984_2631467_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX29547.1|2635972_2637127_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX30918.1|2637432_2638449_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX29548.1|2638695_2639484_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX29549.1|2639550_2640231_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX29550.1|2640227_2640998_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX29551.1|2641096_2642047_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29552.1|2642102_2643020_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX29553.1|2643030_2644209_-	mandelate racemase	NA	NA	NA	NA	NA
AZX29554.1|2644228_2645224_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29555.1|2646812_2647421_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX29556.1|2647408_2648449_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX29557.1|2648466_2649429_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29558.1|2649425_2650619_-	CoA transferase	NA	NA	NA	NA	NA
AZX29559.1|2650615_2651413_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX29560.1|2651438_2652425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29561.1|2652443_2654483_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX30919.1|2654684_2655365_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29562.1|2655378_2656290_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX29563.1|2656286_2656865_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX29564.1|2657003_2657909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29565.1|2657916_2661336_+	nuclease	NA	NA	NA	NA	NA
AZX29566.1|2661323_2663924_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX29567.1|2664879_2665512_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29568.1|2665905_2666664_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29569.1|2666660_2667863_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX29570.1|2668050_2669001_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29571.1|2669908_2671054_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX30920.1|2671073_2671796_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX29572.1|2671912_2672092_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29573.1|2672157_2673108_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	2835672	2987336	4085512	transposase,tRNA,holin	uncultured_Mediterranean_phage(15.79%)	118	NA	NA
AZX29703.1|2835672_2836623_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29704.1|2836721_2837672_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29705.1|2837770_2838652_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX29706.1|2838729_2840109_-	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZX29707.1|2840147_2840993_-	FTR1 family iron permease	NA	NA	NA	NA	NA
AZX29708.1|2841008_2841353_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZX29709.1|2841355_2841892_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29710.1|2842064_2842640_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZX29711.1|2842742_2843480_-	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX29712.1|2843547_2845185_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZX29713.1|2845292_2846048_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZX29714.1|2846035_2846998_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZX29715.1|2847099_2847900_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZX29716.1|2847961_2850037_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZX29717.1|2850201_2852577_+	protein tex	NA	NA	NA	NA	NA
AZX29718.1|2852657_2854013_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZX29719.1|2855491_2856214_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX29720.1|2856268_2857252_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29721.1|2857381_2858332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29722.1|2858328_2859231_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29723.1|2859318_2860077_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX29724.1|2860089_2861238_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX29725.1|2861278_2862706_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX29726.1|2862935_2864150_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX29727.1|2864195_2867066_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX29728.1|2869476_2869965_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX29729.1|2870090_2872787_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX29730.1|2872941_2875224_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX29731.1|2875389_2876022_+	fimbrial protein	NA	NA	NA	NA	NA
AZX29732.1|2876120_2877071_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX29733.1|2877117_2877672_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX29734.1|2877739_2878585_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX29735.1|2878654_2879623_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX29736.1|2879622_2881419_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29737.1|2883318_2887245_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX29738.1|2887535_2887712_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29739.1|2887980_2891211_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX29740.1|2891492_2892320_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX29741.1|2892353_2893049_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX29742.1|2893041_2894322_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX29743.1|2894331_2895309_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30933.1|2895290_2896991_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX29744.1|2897093_2898197_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX29745.1|2898227_2898983_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX29746.1|2898989_2900510_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX29747.1|2900552_2900855_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29748.1|2900851_2901484_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29749.1|2901562_2903428_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX29750.1|2903424_2904240_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX29751.1|2904247_2905363_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX29752.1|2906267_2907146_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX29753.1|2907145_2907970_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX29754.1|2908137_2909088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29755.1|2909270_2912150_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX29756.1|2912131_2912908_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX29757.1|2913000_2914464_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX29758.1|2914460_2914832_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX29759.1|2914849_2916163_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29760.1|2916199_2916658_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX29761.1|2916770_2917721_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29762.1|2917717_2918731_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX29763.1|2918870_2919857_+	homoserine kinase	NA	NA	NA	NA	NA
AZX29764.1|2919900_2920701_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29765.1|2921503_2922454_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29766.1|2922605_2923208_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29767.1|2923226_2923859_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX29768.1|2924096_2925983_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX29769.1|2926001_2926844_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX29770.1|2926840_2928199_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX29771.1|2928419_2929214_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX29772.1|2929444_2930938_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX29773.1|2931173_2933255_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX29774.1|2933449_2934490_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX29775.1|2934624_2935641_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX29776.1|2935662_2936520_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX30934.1|2936564_2937341_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX29777.1|2937708_2938659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29778.1|2938685_2939150_-	barstar family protein 2	NA	NA	NA	NA	NA
AZX29779.1|2940356_2942645_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX29780.1|2942761_2943634_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29781.1|2943676_2944831_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX29782.1|2944865_2945696_-	transglycosylase	NA	NA	NA	NA	NA
AZX29783.1|2945779_2947324_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX29784.1|2947366_2947726_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29785.1|2947727_2948141_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX29786.1|2948181_2948499_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX29787.1|2948583_2949300_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30935.1|2949563_2950985_+	siroheme synthase	NA	NA	NA	NA	NA
AZX29788.1|2951051_2953814_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZX30936.1|2954146_2955163_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX30937.1|2955498_2956140_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX29789.1|2956230_2957667_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX29790.1|2957824_2958898_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX29791.1|2958894_2960031_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX29792.1|2960175_2960520_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX29793.1|2960586_2962467_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX29794.1|2962516_2963452_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX30938.1|2963784_2964801_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX29795.1|2965738_2967166_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX29796.1|2967162_2968185_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX29797.1|2968174_2968648_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX29798.1|2968773_2969676_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZX29799.1|2969672_2971316_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX30939.1|2971312_2972320_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX30940.1|2973150_2974167_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX29800.1|2974266_2974899_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX29801.1|2974907_2975297_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX29802.1|2975349_2976402_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX29803.1|2977265_2978972_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX29804.1|2979045_2979546_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX29805.1|2979560_2981618_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX29806.1|2981644_2981938_-	response regulator	NA	NA	NA	NA	NA
AZX29807.1|2982039_2982987_-	motility protein MotB	NA	NA	NA	NA	NA
AZX29808.1|2982999_2983875_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX29809.1|2983995_2984556_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX29810.1|2984590_2984914_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX29811.1|2985349_2986087_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX29812.1|2986385_2987336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	3008287	3080781	4085512	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZX29832.1|3008287_3009238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29833.1|3009280_3010456_+	flagellin FliC	NA	NA	NA	NA	NA
AZX29834.1|3010677_3012468_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX29835.1|3012480_3014142_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX29836.1|3014154_3016860_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX29837.1|3017152_3018907_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX29838.1|3018903_3019530_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX29839.1|3019526_3020378_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX29840.1|3020453_3022568_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX29841.1|3022718_3023369_+	SCO family protein	NA	NA	NA	NA	NA
AZX29842.1|3023514_3023766_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX29843.1|3023835_3025218_-	multidrug transporter	NA	NA	NA	NA	NA
AZX29844.1|3025214_3028394_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX30942.1|3029201_3030119_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29845.1|3030170_3030902_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX29846.1|3030961_3031534_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX30943.1|3033042_3034059_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX29847.1|3034196_3035246_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX29848.1|3035350_3036301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29849.1|3036396_3037122_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX29850.1|3037332_3037713_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX29851.1|3038018_3038891_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX29852.1|3038898_3039279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29853.1|3039432_3040707_-	radical SAM protein	NA	NA	NA	NA	NA
AZX30944.1|3042194_3043103_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX29854.1|3043900_3044965_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX29855.1|3046801_3047836_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX29856.1|3048025_3048667_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX29857.1|3048749_3050576_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX29858.1|3050819_3051749_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX29859.1|3051748_3052498_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX29860.1|3052569_3053484_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX29861.1|3053503_3054649_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX29862.1|3054709_3055621_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX29863.1|3055701_3056652_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29864.1|3056750_3057335_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX29865.1|3057369_3058359_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX29866.1|3058355_3059297_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX29867.1|3059293_3060514_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX29868.1|3060556_3060871_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX29869.1|3061062_3061422_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX29870.1|3061423_3063154_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX29871.1|3063326_3063998_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX29872.1|3064012_3065341_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX29873.1|3065337_3066237_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX29874.1|3066323_3067409_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX29875.1|3067401_3068535_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX29876.1|3068534_3071216_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX29877.1|3071586_3072168_+	OmpA family protein	NA	NA	NA	NA	NA
AZX29878.1|3072245_3073019_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX29879.1|3073015_3073693_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX29880.1|3073908_3075090_+	MFS transporter	NA	NA	NA	NA	NA
AZX29881.1|3075566_3075824_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29882.1|3075862_3076045_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX29883.1|3076074_3077025_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30945.1|3077154_3077547_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX29884.1|3077823_3078735_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX29885.1|3078859_3079834_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29886.1|3079830_3080781_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	3094288	3147806	4085512	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZX29897.1|3094288_3095239_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29898.1|3095351_3095603_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29899.1|3095796_3096012_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29900.1|3096108_3097227_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX29901.1|3097346_3097559_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29902.1|3097718_3097940_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29903.1|3097992_3098943_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29904.1|3100119_3101490_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX29905.1|3101522_3102314_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29906.1|3102326_3103382_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29907.1|3103407_3104283_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29908.1|3104388_3104637_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29909.1|3104671_3106126_-	carboxylase	NA	NA	NA	NA	NA
AZX29910.1|3106122_3106644_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX29911.1|3106672_3108025_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX29912.1|3108248_3111137_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX29913.1|3113281_3114583_+	phospholipase	NA	NA	NA	NA	NA
AZX29914.1|3114597_3115314_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX29915.1|3115595_3116276_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX29916.1|3116287_3116455_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29917.1|3116563_3116716_-	hypothetical protein	NA	NA	NA	NA	NA
AZX29918.1|3116803_3117463_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX29919.1|3117843_3119694_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX29920.1|3119690_3120641_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29921.1|3121804_3123520_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX29922.1|3123530_3124022_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX29923.1|3124094_3125111_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX29924.1|3125278_3126058_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX29925.1|3126076_3126604_-	lipoprotein	NA	NA	NA	NA	NA
AZX29926.1|3126602_3126809_+	hypothetical protein	NA	NA	NA	NA	NA
AZX29927.1|3126897_3127167_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX29928.1|3127257_3129417_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX29929.1|3129537_3130257_+	lipoprotein	NA	NA	NA	NA	NA
AZX29930.1|3130253_3131204_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29931.1|3131344_3132562_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX29932.1|3132555_3133167_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX29933.1|3133800_3134778_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX29934.1|3134921_3135668_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX29935.1|3135689_3136136_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX29936.1|3136923_3139155_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX29937.1|3139177_3139978_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX29938.1|3140259_3141492_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX29939.1|3141602_3142592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX29940.1|3142622_3144011_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX29941.1|3145609_3146593_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX30947.1|3146789_3147806_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	3212264	3282316	4085512	transposase	Klosneuvirus(16.67%)	57	NA	NA
AZX29995.1|3212264_3213215_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX29996.1|3213211_3214231_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX29997.1|3214240_3216949_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX29998.1|3217096_3217753_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX29999.1|3217851_3218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30000.1|3218907_3219843_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX30001.1|3220042_3221737_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX30002.1|3221771_3222698_+	VOC family protein	NA	NA	NA	NA	NA
AZX30950.1|3222766_3223864_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30003.1|3223882_3224746_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX30004.1|3224757_3225540_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX30005.1|3225536_3226655_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX30006.1|3226651_3228184_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX30007.1|3228224_3229232_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX30008.1|3229376_3230099_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30009.1|3230114_3231137_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX30010.1|3231453_3232188_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30011.1|3232272_3234018_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX30012.1|3234014_3234767_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX30013.1|3234811_3235768_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX30014.1|3235856_3236423_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30015.1|3236430_3237291_-	aminotransferase	NA	NA	NA	NA	NA
AZX30016.1|3237320_3238064_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX30017.1|3238080_3238764_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX30018.1|3239601_3240516_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX30019.1|3240580_3241489_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30020.1|3241579_3243004_-	protein CyaE	NA	NA	NA	NA	NA
AZX30021.1|3243005_3244328_-	protein CyaD	NA	NA	NA	NA	NA
AZX30022.1|3244324_3246463_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX30023.1|3246540_3251661_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX30951.1|3251847_3252027_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30024.1|3252109_3252697_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX30025.1|3252712_3254194_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX30026.1|3254248_3256102_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30027.1|3256364_3257702_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX30028.1|3257736_3259734_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX30029.1|3259751_3261800_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX30030.1|3261930_3262797_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30031.1|3263065_3264031_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX30032.1|3264145_3265294_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX30033.1|3265718_3266030_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX30034.1|3266063_3266324_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX30035.1|3266473_3267607_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX30036.1|3267677_3268814_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX30037.1|3268979_3269774_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX30038.1|3269836_3270280_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX30039.1|3270395_3271346_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30040.1|3271332_3271521_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30041.1|3271468_3271876_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX30042.1|3271948_3274144_+	DNA methylase	NA	NA	NA	NA	NA
AZX30043.1|3274365_3275316_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30044.1|3275414_3276365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30045.1|3276324_3276849_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX30046.1|3276980_3277952_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30952.1|3278071_3280516_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX30047.1|3280531_3281122_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX30048.1|3281365_3282316_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	3297762	3397875	4085512	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX30062.1|3297762_3298713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30063.1|3299444_3299822_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX30064.1|3299806_3300508_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30065.1|3300651_3301344_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX30066.1|3301343_3302447_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX30067.1|3302556_3304929_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX30068.1|3304925_3306485_+	chaperone SurA	NA	NA	NA	NA	NA
AZX30069.1|3306509_3307307_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX30070.1|3307338_3308484_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX30071.1|3308588_3310031_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX30953.1|3310033_3311122_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30072.1|3313400_3314351_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30073.1|3314337_3314556_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30074.1|3315480_3316038_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX30075.1|3316013_3316364_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30076.1|3316532_3317327_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX30077.1|3317323_3318373_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX30078.1|3318372_3319062_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX30079.1|3319148_3319646_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX30080.1|3319677_3320994_-	protein TolB	NA	NA	NA	NA	NA
AZX30081.1|3321010_3321985_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX30082.1|3322021_3322480_-	protein TolR	NA	NA	NA	NA	NA
AZX30083.1|3322479_3323160_-	protein TolQ	NA	NA	NA	NA	NA
AZX30084.1|3323162_3323591_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX30085.1|3323643_3325374_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX30086.1|3325439_3326012_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX30087.1|3325992_3326679_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX30088.1|3327034_3327706_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX30089.1|3327712_3327913_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30090.1|3328255_3328537_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30091.1|3328533_3329067_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX30092.1|3329048_3329600_-	lysozyme	NA	NA	NA	NA	NA
AZX30093.1|3329578_3329821_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30094.1|3329825_3330638_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30095.1|3330637_3330901_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30096.1|3331119_3331536_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30097.1|3331540_3335497_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX30098.1|3335489_3335879_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX30099.1|3335875_3336409_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX30100.1|3336476_3336836_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30101.1|3336845_3339458_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX30102.1|3339483_3339774_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX30103.1|3339791_3340121_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX30104.1|3340130_3340649_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX30105.1|3340903_3341404_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX30106.1|3341411_3341834_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30107.1|3341830_3342229_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX30108.1|3342225_3342621_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX30109.1|3342620_3342821_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30110.1|3342822_3343305_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX30111.1|3343367_3343619_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30112.1|3343628_3344276_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX30113.1|3344293_3345244_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30114.1|3345672_3346275_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX30115.1|3346397_3346640_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX30954.1|3346645_3347701_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX30116.1|3347729_3349148_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX30117.1|3349150_3350428_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX30118.1|3350414_3350864_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX30119.1|3351539_3352490_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30120.1|3352507_3352729_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30121.1|3352743_3353442_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30122.1|3353434_3353755_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30955.1|3354234_3354846_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX30123.1|3354911_3355124_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30124.1|3355375_3356326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30125.1|3356424_3357498_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30126.1|3357665_3358460_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX30127.1|3358499_3359024_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX30128.1|3359016_3360759_-	sulfite reductase	NA	NA	NA	NA	NA
AZX30129.1|3360968_3361727_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX30130.1|3361729_3362437_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX30131.1|3362453_3363335_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX30132.1|3363345_3364104_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX30956.1|3364072_3364828_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30133.1|3364897_3366316_+	amidase	NA	NA	NA	NA	NA
AZX30134.1|3366337_3366988_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX30135.1|3367121_3367457_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX30136.1|3367545_3368496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30137.1|3368572_3370393_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX30138.1|3370397_3371471_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX30139.1|3371593_3372562_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX30140.1|3372635_3373547_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX30141.1|3373565_3374138_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX30142.1|3374218_3374767_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX30143.1|3374766_3376356_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX30144.1|3376425_3376665_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX30145.1|3376705_3377737_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX30146.1|3377796_3378978_-	monooxygenase	NA	NA	NA	NA	NA
AZX30147.1|3379074_3379527_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30148.1|3379536_3380877_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX30149.1|3381193_3382231_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30150.1|3382612_3382972_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30957.1|3383055_3383997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30151.1|3384071_3385022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30152.1|3385315_3386410_+	porin	NA	NA	NA	NA	NA
AZX30153.1|3386491_3387373_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX30154.1|3387394_3388234_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX30155.1|3388309_3389827_+	peptidase	NA	NA	NA	NA	NA
AZX30156.1|3389923_3391024_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX30157.1|3391040_3391463_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX30158.1|3391485_3391698_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX30159.1|3391744_3392665_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX30958.1|3392928_3393597_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX30160.1|3393599_3393929_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX30161.1|3394135_3395569_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX30162.1|3395580_3395964_-	thioredoxin	NA	NA	NA	NA	NA
AZX30163.1|3396025_3396826_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30164.1|3396924_3397875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025360	Bordetella pertussis strain H642 chromosome, complete genome	4085512	3558544	3605393	4085512	transposase	Lake_Baikal_phage(25.0%)	39	NA	NA
AZX30305.1|3558544_3559495_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30306.1|3559611_3560679_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AZX30307.1|3560754_3563883_-	ribonuclease E/G	NA	NA	NA	NA	NA
AZX30308.1|3564390_3565356_+	23S rRNA pseudouridine(955/2504/2580) synthase	NA	NA	NA	NA	NA
AZX30309.1|3565358_3566030_+	hydrolase	NA	NA	NA	NA	NA
AZX30310.1|3566186_3567146_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AZX30311.1|3567153_3567816_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AZX30312.1|3567812_3568763_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30313.1|3568884_3570138_+	CoA transferase	NA	NA	NA	NA	NA
AZX30314.1|3570115_3571078_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30964.1|3571230_3571704_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX30315.1|3571703_3572936_+	2-methylfumaryl-CoA isomerase	NA	NA	NA	NA	NA
AZX30316.1|3573681_3573963_+	hypothetical protein	NA	NA	NA	NA	NA
AZX30317.1|3573949_3574936_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30318.1|3575079_3575484_+	RidA family protein	NA	NA	NA	NA	NA
AZX30319.1|3575625_3579012_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AZX30320.1|3579042_3580506_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AZX30321.1|3580502_3582143_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AZX30322.1|3582252_3582888_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30323.1|3582917_3583358_-	hypothetical protein	NA	NA	NA	NA	NA
AZX30324.1|3583868_3584072_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AZX30325.1|3584247_3585153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30326.1|3585251_3586202_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30327.1|3586300_3587251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30328.1|3589032_3590226_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX30329.1|3590291_3591320_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX30330.1|3591346_3592519_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX30331.1|3592644_3593622_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX30332.1|3593632_3594604_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX30333.1|3594670_3595456_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX30334.1|3595448_3596681_-	CoA transferase	NA	NA	NA	NA	NA
AZX30335.1|3596876_3597632_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX30336.1|3597742_3598261_+	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX30965.1|3600049_3601450_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX30337.1|3601549_3601894_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX30338.1|3601982_3602453_+	universal stress protein	NA	NA	NA	NA	NA
AZX30339.1|3602863_3603262_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX30340.1|3603393_3604344_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX30341.1|3604442_3605393_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
