The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	0	65104	4097016	tRNA,transposase,protease	Natrialba_phage(12.5%)	56	NA	NA
AZX16638.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX16639.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX16640.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX16641.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX16642.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX16643.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX16644.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX16645.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX16646.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX16647.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX16648.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX16649.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX16650.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX16651.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX20028.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX16652.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX16653.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX16654.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX16655.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16656.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX16657.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16658.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX16659.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX20029.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX16660.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX16661.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX16662.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16663.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX16664.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX16665.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX16666.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX16667.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX16668.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX16669.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX16670.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX16671.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX16672.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16673.1|44712_45663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16674.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
AZX16675.1|46769_47006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX16676.1|47133_48027_+	hypothetical protein	NA	NA	NA	NA	NA
AZX16677.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX16678.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX16679.1|51190_52141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16680.1|52183_53440_+	MFS transporter	NA	NA	NA	NA	NA
AZX16681.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX16682.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX16683.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX16684.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX16685.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX16686.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16687.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX16688.1|61523_61943_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX16689.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16690.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16691.1|64522_65104_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	70134	123122	4097016	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
AZX16696.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16697.1|71178_71493_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX16698.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX16699.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX16700.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX16701.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20030.1|76329_77079_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16702.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX16703.1|78683_79634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20031.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16704.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX16705.1|83871_84576_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX16706.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX16707.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
AZX16708.1|86530_87763_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX16709.1|87780_89040_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX16710.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX16711.1|90159_91260_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX16712.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX16713.1|91842_92895_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX16714.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX16715.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX16716.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16717.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX16718.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX16719.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX16720.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX16721.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
AZX16722.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX16723.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX16724.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX16725.1|103857_104133_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX16726.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX16727.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX16728.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX16729.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX16730.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX16731.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16732.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX16733.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX16734.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX16735.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX20032.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX16736.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20033.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX16737.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX16738.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX16739.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX16740.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX16741.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX16742.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	165942	226453	4097016	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX16774.1|165942_166893_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16775.1|168336_169239_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16776.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
AZX16777.1|170176_171559_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX16778.1|171592_172222_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX16779.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX16780.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20038.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
AZX16781.1|175350_176301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16782.1|177416_177944_+	lipoprotein	NA	NA	NA	NA	NA
AZX16783.1|178035_178851_+	lipoprotein	NA	NA	NA	NA	NA
AZX16784.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX16785.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX16786.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16787.1|182382_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX16788.1|183474_185379_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX16789.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX16790.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX16791.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
AZX16792.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX20039.1|190579_191026_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX16793.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
AZX16794.1|191804_194075_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX16795.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX16796.1|195454_196405_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16797.1|196450_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX16798.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX16799.1|198427_199528_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX16800.1|199609_199984_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX16801.1|200043_202908_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX16802.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX16803.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
AZX16804.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX16805.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16806.1|207791_208115_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX16807.1|208219_209269_-	cyclase	NA	NA	NA	NA	NA
AZX16808.1|209265_210090_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX16809.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
AZX16810.1|210412_210688_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX16811.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX16812.1|211388_212075_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX20040.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX16813.1|213106_213832_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX16814.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX16815.1|215324_216257_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX16816.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX16817.1|220103_223046_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX16818.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX16819.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX16820.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX16821.1|225502_226453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	234385	287973	4097016	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
AZX16829.1|234385_235336_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16830.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16831.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16832.1|237418_238216_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX16833.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX16834.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX16835.1|241384_242428_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX16836.1|242598_244701_+	hypothetical protein	NA	NA	NA	NA	NA
AZX16837.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX16838.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX16839.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX16840.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX16841.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX16842.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX16843.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX16844.1|252672_254562_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX16845.1|254648_255287_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20041.1|255429_256674_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX16846.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX16847.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX16848.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
AZX16849.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX16850.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX16851.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX16852.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
AZX16853.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX16854.1|266622_267573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16855.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX16856.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX16857.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX16858.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX16859.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX16860.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX16861.1|275149_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX16862.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX16863.1|278189_279140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX16864.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
AZX16865.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX16866.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
AZX16867.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX16868.1|280704_281316_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX16869.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
AZX16870.1|282348_283731_-	cytochrome b	NA	NA	NA	NA	NA
AZX16871.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX16872.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX16873.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX20042.1|285889_287026_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX16874.1|287022_287973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	556358	615658	4097016	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZX17096.1|556358_557309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17097.1|558632_559409_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX17098.1|559443_561216_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX17099.1|561217_562120_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX17100.1|562244_562604_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX17101.1|562635_563598_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX17102.1|563696_564647_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17103.1|564659_565595_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX17104.1|565654_566494_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX17105.1|566490_567660_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX17106.1|567656_568946_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17107.1|568988_569363_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX17108.1|569468_570206_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX17109.1|570213_570918_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX17110.1|571181_572702_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX17111.1|572757_573321_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX17112.1|573339_574371_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX17113.1|574367_575156_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX17114.1|575331_576321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17115.1|578077_579028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17116.1|580250_581153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17117.1|581154_582009_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX17118.1|582055_583165_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX17119.1|583175_583694_-	flavin reductase	NA	NA	NA	NA	NA
AZX17120.1|583723_584356_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX17121.1|584427_585087_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX17122.1|585083_586304_-	MFS transporter	NA	NA	NA	NA	NA
AZX17123.1|586572_587445_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX17124.1|587600_588338_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17125.1|588340_589936_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX20063.1|590067_591057_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX17126.1|591053_591764_+	oxidoreductase	NA	NA	NA	NA	NA
AZX20064.1|591859_592876_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX17127.1|593147_593774_-	aminotransferase	NA	NA	NA	NA	NA
AZX17128.1|593829_594957_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX17129.1|594962_600680_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX17130.1|600963_601179_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17131.1|601247_602192_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX17132.1|602380_603316_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX17133.1|603433_605005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17134.1|605084_606293_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX17135.1|606790_607708_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX17136.1|610068_610290_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20065.1|610620_611637_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX17137.1|611721_611973_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX17138.1|611976_612792_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX17139.1|612904_613783_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX17140.1|613894_615658_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	621813	675554	4097016	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZX17144.1|621813_622764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17145.1|622832_623831_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX17146.1|623835_624516_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX17147.1|624653_625046_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX20066.1|625153_626170_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX17148.1|626409_627195_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX17149.1|627289_628699_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX17150.1|628709_629510_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX17151.1|629530_630301_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX17152.1|630343_630811_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX17153.1|630807_631758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17154.1|633706_634585_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX17155.1|635511_638490_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17156.1|638488_638857_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17157.1|638843_639794_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17158.1|639790_640879_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17159.1|640914_641778_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX17160.1|642917_643307_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX17161.1|643310_644093_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX17162.1|644126_644879_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX17163.1|645187_646327_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17164.1|646323_647115_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX17165.1|647111_647861_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX17166.1|647857_648730_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX17167.1|648729_649731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX17168.1|649727_650891_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX17169.1|650916_651600_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17170.1|651553_652888_+	CoA ligase	NA	NA	NA	NA	NA
AZX17171.1|652880_653975_+	CoA transferase	NA	NA	NA	NA	NA
AZX20067.1|654741_655692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17172.1|657632_658892_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17173.1|658888_660427_+	SpoVR family protein	NA	NA	NA	NA	NA
AZX17174.1|660423_661620_-	MFS transporter	NA	NA	NA	NA	NA
AZX17175.1|661616_663008_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX17176.1|663004_664021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX17177.1|664089_665325_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX17178.1|665425_666220_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17179.1|666589_666997_+	GFA family protein	NA	NA	NA	NA	NA
AZX17180.1|667414_667687_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX17181.1|668268_669123_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX17182.1|669223_669526_+	urease subunit gamma	NA	NA	NA	NA	NA
AZX17183.1|669552_670188_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX17184.1|670204_670513_+	urease subunit beta	NA	NA	NA	NA	NA
AZX17185.1|670509_672225_+	urease subunit alpha	NA	NA	NA	NA	NA
AZX17186.1|672227_672845_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX17187.1|672945_673530_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX17188.1|673554_674199_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX17189.1|674603_675554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	724441	762790	4097016	tRNA,integrase,transposase,protease	Pseudomonas_phage(25.0%)	31	721740:721758	741628:741646
721740:721758	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX17226.1|724441_725089_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX17227.1|725085_725868_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX17228.1|725940_727032_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX17229.1|727311_728439_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX17230.1|728780_729827_+	Fic family protein	NA	NA	NA	NA	NA
AZX20070.1|729837_729978_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX17231.1|729974_733094_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX17232.1|733095_736047_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX17233.1|736062_737274_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX17234.1|737270_737471_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17235.1|737457_738408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17236.1|738424_738919_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX17237.1|738922_739180_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17238.1|739204_740635_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX17239.1|740716_741001_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZX17240.1|741784_742735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
741628:741646	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX17241.1|743153_745718_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX17242.1|745762_747616_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17243.1|747948_749520_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX17244.1|750961_751912_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17245.1|751927_752431_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX20071.1|754637_755063_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17246.1|755214_755514_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX17247.1|755559_755682_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17248.1|755774_756356_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20072.1|756443_757328_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX17249.1|757463_758219_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17250.1|758240_758921_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX17251.1|758932_760042_+	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX20073.1|760048_761527_-	phospholipase D family protein	NA	NA	NA	NA	NA
AZX17252.1|761839_762790_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	774619	809457	4097016	transposase,holin	Pandoravirus(20.0%)	36	NA	NA
AZX17261.1|774619_775570_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17262.1|775668_776511_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX17263.1|776510_776846_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX17264.1|776916_778335_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX17265.1|778614_779655_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX17266.1|779734_779986_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX17267.1|780096_781395_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX17268.1|781543_782398_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX17269.1|782394_783285_+	acyltransferase	NA	NA	NA	NA	NA
AZX17270.1|783327_784239_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX17271.1|784265_784958_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX17272.1|784972_785953_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX17273.1|785965_788107_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX17274.1|788155_789124_-	nickel transporter	NA	NA	NA	NA	NA
AZX20075.1|789114_789738_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX17275.1|789743_790679_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17276.1|790675_791572_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX17277.1|791568_792291_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX17278.1|792281_792482_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17279.1|792619_793123_+	transcriptional repressor	NA	NA	NA	NA	NA
AZX17280.1|793399_794515_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX17281.1|794657_795122_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX17282.1|795269_795809_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX17283.1|795830_797165_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX20076.1|797178_797484_-	RND transporter	NA	NA	NA	NA	NA
AZX17284.1|797908_798490_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX17285.1|798571_799522_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17286.1|799620_800571_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17287.1|801011_801917_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX17288.1|801972_803580_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX17289.1|803833_805339_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX17290.1|805353_805818_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX17291.1|806107_807058_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17292.1|807220_807751_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17293.1|807750_808062_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZX17294.1|808506_809457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	857601	921436	4097016	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	58	NA	NA
AZX17329.1|857601_858552_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17330.1|858650_859514_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
AZX17331.1|859510_860410_-	energy transducer TonB	NA	NA	NA	NA	NA
AZX17332.1|860447_862331_-	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
AZX17333.1|862402_862996_-	esterase	NA	NA	NA	NA	NA
AZX17334.1|863006_864377_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AZX17335.1|864459_865008_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AZX17336.1|865086_865521_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AZX17337.1|865610_866060_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX17338.1|866069_867416_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX17339.1|868381_869479_+	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
AZX20080.1|869490_870432_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
AZX17340.1|870604_871108_+	lipoprotein	NA	NA	NA	NA	NA
AZX17341.1|871388_871628_+	acyl carrier protein	NA	NA	NA	NA	NA
AZX20081.1|871653_872781_+	teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AZX17342.1|872777_872903_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17343.1|872910_874038_+	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
AZX17344.1|874048_875512_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
AZX17345.1|875519_876095_-	YggT family protein	NA	NA	NA	NA	NA
AZX17346.1|876233_876761_-	histone	NA	NA	NA	NA	NA
AZX17347.1|877078_878275_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
AZX17348.1|878296_881224_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
AZX17349.1|881529_884592_-	pyruvate ferredoxin oxidoreductase	NA	NA	NA	NA	NA
AZX20082.1|884723_884981_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17350.1|885153_885606_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX17351.1|885807_886317_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17352.1|886385_887573_+	MFS transporter	NA	NA	NA	NA	NA
AZX20083.1|887576_889022_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AZX17353.1|889118_891578_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX17354.1|891574_892525_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17355.1|892511_892730_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17356.1|892623_893298_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17357.1|893594_895091_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17358.1|895207_896596_+	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
AZX17359.1|896701_897091_+	VOC family protein	NA	NA	NA	NA	NA
AZX17360.1|897102_897795_-	cysteine hydrolase	NA	NA	NA	NA	NA
AZX17361.1|897809_898646_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX17362.1|898648_899458_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
AZX17363.1|900714_901389_-	carboxylesterase	NA	NA	NA	NA	NA
AZX17364.1|901402_901954_-	DUF615 domain-containing protein	NA	NA	NA	NA	NA
AZX17365.1|902012_903377_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AZX17366.1|903718_904816_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20084.1|905111_905540_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AZX17367.1|905549_905942_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AZX17368.1|906130_907195_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AZX17369.1|907231_907978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17370.1|908065_908437_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
AZX17371.1|908506_909643_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
AZX17372.1|909648_911064_-	metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
AZX17373.1|911155_912106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17374.1|912373_913603_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX17375.1|913638_914295_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AZX17376.1|914515_915763_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
AZX17377.1|915920_916403_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AZX17378.1|917397_917961_-	hydrolase	NA	NA	NA	NA	NA
AZX20085.1|918166_919291_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
AZX17379.1|919436_920387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17380.1|920485_921436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	994722	1088759	4097016	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZX17436.1|994722_995673_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17437.1|995775_996438_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17438.1|996540_996951_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17439.1|997055_998057_+	amidase	NA	NA	NA	NA	NA
AZX17440.1|998059_999256_+	CoA transferase	NA	NA	NA	NA	NA
AZX17441.1|999276_1000080_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX17442.1|1000160_1000457_+	histidine kinase	NA	NA	NA	NA	NA
AZX17443.1|1000487_1001051_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX20089.1|1001091_1001949_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX17444.1|1001956_1002706_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX17445.1|1002727_1003600_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17446.1|1003628_1004408_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX17447.1|1004441_1005239_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17448.1|1006690_1007863_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX17449.1|1007893_1008286_+	RidA family protein	NA	NA	NA	NA	NA
AZX17450.1|1008279_1009140_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX17451.1|1009143_1010106_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX20090.1|1010882_1011572_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX17452.1|1012432_1013383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17453.1|1013732_1014602_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17454.1|1014672_1015368_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX17455.1|1015357_1015867_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX17456.1|1015863_1017084_+	MFS transporter	NA	NA	NA	NA	NA
AZX17457.1|1017031_1017934_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17458.1|1018820_1020107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17459.1|1020145_1021519_+	amidase	NA	NA	NA	NA	NA
AZX17460.1|1021557_1022259_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX17461.1|1022557_1023547_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX17462.1|1023647_1024109_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX17463.1|1024124_1024673_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX17464.1|1024814_1026290_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX17465.1|1026395_1027487_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX17466.1|1027490_1028273_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX17467.1|1028282_1029071_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX17468.1|1030196_1030631_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX17469.1|1030627_1031638_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX17470.1|1031681_1032608_-	VOC family protein	NA	NA	NA	NA	NA
AZX17471.1|1032894_1033263_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX20091.1|1033479_1034430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20092.1|1034411_1036901_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX17472.1|1036949_1037642_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX17473.1|1037714_1038914_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX17474.1|1038931_1039837_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17475.1|1039952_1040882_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX20093.1|1040907_1042254_+	MFS transporter	NA	NA	NA	NA	NA
AZX20094.1|1042281_1043031_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX17476.1|1043044_1043827_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX17477.1|1044019_1044970_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17478.1|1045031_1046177_-	porin	NA	NA	NA	NA	NA
AZX17479.1|1046653_1047490_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX17480.1|1047559_1048525_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17481.1|1048521_1049472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17482.1|1049458_1049653_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17483.1|1049857_1050400_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17484.1|1051435_1052386_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17485.1|1052627_1052996_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17486.1|1053041_1054166_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20095.1|1055300_1056041_-	oxidoreductase	NA	NA	NA	NA	NA
AZX17487.1|1056144_1056765_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17488.1|1056868_1057819_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17489.1|1057815_1059924_-	AsmA family protein	NA	NA	NA	NA	NA
AZX17490.1|1060068_1060728_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX17491.1|1060759_1061224_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX17492.1|1061499_1061685_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17493.1|1061736_1062489_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX17494.1|1062495_1063758_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17495.1|1063799_1065038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17496.1|1066115_1067243_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX17497.1|1067253_1068081_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX17498.1|1068067_1068934_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX17499.1|1070300_1070705_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17500.1|1070796_1071747_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20096.1|1072116_1073028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX17501.1|1073042_1073753_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17502.1|1073749_1074994_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX17503.1|1074995_1075430_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX17504.1|1075458_1075764_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX17505.1|1075657_1075876_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17506.1|1075862_1076813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17507.1|1076869_1078018_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX17508.1|1078098_1079049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17509.1|1079580_1080378_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17510.1|1080425_1081079_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX17511.1|1081035_1082124_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX17512.1|1082288_1084514_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX17513.1|1086791_1087688_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX17514.1|1087576_1087822_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17515.1|1087808_1088759_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	1119145	1190117	4097016	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX17545.1|1119145_1120096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17546.1|1120152_1121265_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX17547.1|1123648_1124599_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17548.1|1125189_1125966_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX17549.1|1126083_1126347_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX17550.1|1126447_1127452_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX17551.1|1127652_1129254_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX17552.1|1129279_1130038_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX17553.1|1130129_1130786_-	adenylate kinase	NA	NA	NA	NA	NA
AZX17554.1|1130876_1131641_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX17555.1|1131650_1131839_-	hypothetical protein	NA	NA	NA	NA	NA
AZX17556.1|1131894_1132938_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX17557.1|1132934_1133348_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX17558.1|1133344_1133965_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX17559.1|1134245_1135196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17560.1|1135363_1136755_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX17561.1|1136827_1137406_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX17562.1|1137522_1138920_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX17563.1|1139035_1140241_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX17564.1|1140340_1140859_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX17565.1|1140953_1141199_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX17566.1|1141426_1141741_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX17567.1|1141830_1147020_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX20097.1|1147016_1149185_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX17568.1|1149204_1151556_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX17569.1|1151560_1152880_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX17570.1|1152898_1154572_+	MCE family protein	NA	NA	NA	NA	NA
AZX17571.1|1154576_1155245_+	lipoprotein	NA	NA	NA	NA	NA
AZX17572.1|1155401_1159223_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX17573.1|1159553_1160504_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17574.1|1160525_1161671_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17575.1|1161819_1162749_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX17576.1|1162745_1163834_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX17577.1|1163830_1164634_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX17578.1|1164630_1165362_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX17579.1|1165419_1166709_-	MFS transporter	NA	NA	NA	NA	NA
AZX17580.1|1166805_1167408_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17581.1|1171962_1172301_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX17582.1|1172969_1173275_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17583.1|1174981_1175932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17584.1|1175928_1177260_-	MFS transporter	NA	NA	NA	NA	NA
AZX17585.1|1178499_1180521_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX17586.1|1180513_1181155_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX17587.1|1181151_1181559_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX17588.1|1181555_1182356_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX17589.1|1182430_1183135_+	oxidoreductase	NA	NA	NA	NA	NA
AZX17590.1|1183166_1183961_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX17591.1|1183957_1184908_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17592.1|1185006_1185957_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17593.1|1186055_1186490_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX17594.1|1186572_1188909_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX20098.1|1189100_1190117_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	1291386	1348597	4097016	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX17673.1|1291386_1292337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17674.1|1296083_1296695_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX17675.1|1296917_1298378_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX17676.1|1298474_1300067_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX17677.1|1300053_1300332_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17678.1|1300390_1300678_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX17679.1|1300679_1302020_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX17680.1|1302115_1302805_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17681.1|1302817_1304248_+	MFS transporter	NA	NA	NA	NA	NA
AZX17682.1|1305972_1306794_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17683.1|1306804_1308376_+	amidohydrolase	NA	NA	NA	NA	NA
AZX17684.1|1308404_1309382_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17685.1|1309408_1310212_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX17686.1|1310208_1311003_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX17687.1|1311010_1312246_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX17688.1|1312238_1312673_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX17689.1|1313422_1314373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17690.1|1314994_1316722_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX17691.1|1316833_1318192_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX17692.1|1318312_1318498_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17693.1|1318484_1319435_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17694.1|1319475_1320546_+	FUSC family protein	NA	NA	NA	NA	NA
AZX17695.1|1320568_1321447_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX17696.1|1321618_1322590_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX17697.1|1322752_1323595_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX17698.1|1323756_1324437_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX17699.1|1324430_1325600_+	amine oxidase	NA	NA	NA	NA	NA
AZX17700.1|1325596_1326628_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX17701.1|1326671_1327913_+	MFS transporter	NA	NA	NA	NA	NA
AZX17702.1|1327947_1329480_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX17703.1|1329560_1330184_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX17704.1|1330214_1330826_+	LysE family translocator	NA	NA	NA	NA	NA
AZX17705.1|1330861_1331332_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX17706.1|1331763_1332768_+	peptidase M20	NA	NA	NA	NA	NA
AZX17707.1|1332804_1334319_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX17708.1|1334322_1335282_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX17709.1|1335310_1336114_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX17710.1|1336115_1337750_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX17711.1|1337833_1338895_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX17712.1|1339093_1339363_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17713.1|1339366_1339891_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX17714.1|1340306_1341257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17715.1|1341253_1342324_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX17716.1|1342396_1343035_+	DedA family protein	NA	NA	NA	NA	NA
AZX17717.1|1343329_1343557_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX17718.1|1343679_1344393_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX17719.1|1344637_1345588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX17720.1|1345691_1345973_+	hypothetical protein	NA	NA	NA	NA	NA
AZX17721.1|1346087_1347536_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX17722.1|1347646_1348597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	1731732	1779747	4097016	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
AZX18050.1|1731732_1732683_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18051.1|1732781_1735382_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX18052.1|1735488_1736493_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18053.1|1736601_1737942_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX18054.1|1737982_1739011_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18055.1|1739206_1739752_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18056.1|1739748_1740309_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX18057.1|1740407_1741358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18058.1|1741395_1741983_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX18059.1|1742000_1742384_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX18060.1|1743743_1745036_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX18061.1|1745170_1746211_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX20120.1|1746308_1747325_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX18062.1|1747592_1748240_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX18063.1|1748365_1749124_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX20121.1|1749198_1749888_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX18064.1|1749905_1750790_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX18065.1|1750786_1751566_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX18066.1|1751592_1752270_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20122.1|1752558_1753311_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18067.1|1753429_1754830_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX18068.1|1754853_1755252_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX18069.1|1755427_1755628_+	copper chaperone	NA	NA	NA	NA	NA
AZX18070.1|1755766_1756495_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX18071.1|1756628_1758044_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX18072.1|1758047_1758911_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX18073.1|1758923_1759673_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX18074.1|1759855_1761871_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX20123.1|1761852_1762401_-	arylesterase	NA	NA	NA	NA	NA
AZX18075.1|1762477_1763197_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX18076.1|1763295_1764246_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18077.1|1764344_1765295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18078.1|1765443_1765782_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX18079.1|1765839_1766001_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX18080.1|1766032_1766233_-	CsbD family protein	NA	NA	NA	NA	NA
AZX18081.1|1766498_1769072_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX18082.1|1769142_1771716_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX18083.1|1774242_1774731_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX18084.1|1774822_1775974_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX18085.1|1776027_1776849_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX18086.1|1776887_1778117_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX18087.1|1778245_1778686_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX18088.1|1778630_1778810_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18089.1|1778796_1779747_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	1783140	1844345	4097016	tRNA,transposase,protease	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX18094.1|1783140_1786002_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX18095.1|1785991_1786957_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX18096.1|1787016_1789011_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX18097.1|1789109_1790060_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18098.1|1790056_1790431_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18099.1|1790692_1791901_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX18100.1|1791897_1794198_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX18101.1|1794250_1796863_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX18102.1|1797222_1799148_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX18103.1|1799144_1800041_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX18104.1|1800047_1801187_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX18105.1|1801186_1802008_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX18106.1|1803578_1803908_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX18107.1|1804290_1805547_+	autotransporter Phg	NA	NA	NA	NA	NA
AZX18108.1|1805621_1805903_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18109.1|1805944_1806265_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18110.1|1806571_1806775_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX18111.1|1806858_1807425_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX18112.1|1807770_1807971_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX18113.1|1808082_1808661_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX18114.1|1808839_1810150_+	trigger factor	NA	NA	NA	NA	NA
AZX18115.1|1810152_1810806_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX18116.1|1810910_1812215_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX18117.1|1812403_1814857_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX18118.1|1814980_1815931_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18119.1|1816158_1817382_+	CoA transferase	NA	NA	NA	NA	NA
AZX18120.1|1817447_1818419_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18121.1|1818431_1818887_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX18122.1|1818900_1819704_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX18123.1|1819700_1820132_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18124.1|1820128_1821286_+	thiolase	NA	NA	NA	NA	NA
AZX18125.1|1821307_1822084_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX18126.1|1824248_1824965_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX18127.1|1824957_1825599_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX18128.1|1825633_1826365_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18129.1|1826382_1826595_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18130.1|1827165_1828116_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18131.1|1829673_1830402_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX18132.1|1830452_1831655_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX18133.1|1831732_1833769_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZX18134.1|1834021_1834513_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX18135.1|1834728_1835241_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX18136.1|1835258_1836470_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX18137.1|1836507_1836918_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX18138.1|1836919_1837243_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX18139.1|1837245_1837758_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX18140.1|1837887_1839750_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX18141.1|1839759_1840101_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX18142.1|1840100_1840295_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX18143.1|1840419_1841313_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX18144.1|1841309_1842260_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18145.1|1842384_1843194_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX18146.1|1843394_1844345_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	1872128	1912819	4097016	tRNA,transposase,protease	Klosneuvirus(25.0%)	36	NA	NA
AZX18166.1|1872128_1874753_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX18167.1|1874739_1874994_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX18168.1|1875060_1875642_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18169.1|1875945_1876206_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX18170.1|1876371_1876995_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX18171.1|1876994_1877768_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX18172.1|1877764_1878973_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX18173.1|1878998_1879472_-	RidA family protein	NA	NA	NA	NA	NA
AZX18174.1|1879545_1880496_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18175.1|1880594_1881545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18176.1|1881643_1882993_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX18177.1|1883758_1884514_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX18178.1|1884606_1887489_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX18179.1|1887811_1888237_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX18180.1|1888264_1889413_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX18181.1|1889409_1889916_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX18182.1|1889922_1891218_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX18183.1|1891258_1892563_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX18184.1|1892564_1893203_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18185.1|1893205_1894366_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX18186.1|1894392_1895748_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX18187.1|1895751_1896822_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX18188.1|1896960_1897197_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX18189.1|1897284_1898391_+	GTPase HflX	NA	NA	NA	NA	NA
AZX18190.1|1898356_1899661_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX18191.1|1899679_1900579_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX18192.1|1900762_1901920_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX18193.1|1901984_1903292_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX18194.1|1903405_1903945_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX18195.1|1904222_1904435_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX18196.1|1904454_1906485_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX20125.1|1907284_1909453_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX18197.1|1909862_1910162_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18198.1|1910446_1910860_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX18199.1|1910819_1911770_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18200.1|1911868_1912819_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	1924023	1975517	4097016	transposase	Klosneuvirus(16.67%)	46	NA	NA
AZX18214.1|1924023_1924974_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18215.1|1924970_1926245_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX18216.1|1926342_1927542_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX18217.1|1927538_1928192_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX18218.1|1928188_1929625_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX18219.1|1929612_1929972_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX18220.1|1930944_1931895_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18221.1|1931993_1932944_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18222.1|1933989_1935855_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX20127.1|1936112_1937633_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX18223.1|1937720_1938371_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZX18224.1|1939319_1940615_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX18225.1|1940636_1941521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20128.1|1941619_1942495_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX18226.1|1942484_1942841_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX18227.1|1942914_1943946_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX18228.1|1944075_1944255_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX18229.1|1944352_1944877_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX18230.1|1944887_1945724_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX18231.1|1945836_1946208_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX18232.1|1946204_1946756_+	ATPase	NA	NA	NA	NA	NA
AZX18233.1|1946771_1948463_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX18234.1|1948511_1949192_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18235.1|1949439_1949904_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18236.1|1950073_1951003_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX18237.1|1951015_1951663_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18238.1|1951736_1953554_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX18239.1|1953637_1954588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18240.1|1954686_1955637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18241.1|1956289_1957240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18242.1|1957258_1957606_-	GFA family protein	NA	NA	NA	NA	NA
AZX18243.1|1957634_1959074_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX18244.1|1959092_1959488_-	VOC family protein	NA	NA	NA	NA	NA
AZX18245.1|1959662_1960271_+	peptidase S16	NA	NA	NA	NA	NA
AZX18246.1|1960283_1961102_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX18247.1|1961053_1962028_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX18248.1|1962056_1963118_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18249.1|1963114_1965331_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX18250.1|1965344_1965803_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX18251.1|1965960_1966305_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18252.1|1966461_1967367_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX20129.1|1967453_1968467_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX20130.1|1970446_1971463_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX18253.1|1971605_1972958_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX18254.1|1973132_1973429_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18255.1|1974566_1975517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	1987013	2051382	4097016	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZX18269.1|1987013_1987964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18270.1|1987950_1988142_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18271.1|1988185_1989136_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18272.1|1989234_1990200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18273.1|1990337_1991237_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18274.1|1993831_1995319_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18275.1|1995329_1996526_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX18276.1|1996598_1997918_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX18277.1|1997914_1998790_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX18278.1|1998820_1999990_-	CoA transferase	NA	NA	NA	NA	NA
AZX18279.1|1999986_2000301_-	ferredoxin	NA	NA	NA	NA	NA
AZX18280.1|2000322_2001045_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX18281.1|2001044_2001863_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX18282.1|2001867_2002395_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX18283.1|2002400_2003666_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX18284.1|2004015_2005155_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18285.1|2005232_2006105_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX18286.1|2006975_2007926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18287.1|2007885_2008521_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18288.1|2008880_2010203_-	isocitrate lyase	NA	NA	NA	NA	NA
AZX18289.1|2010431_2011343_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX18290.1|2012767_2013340_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX18291.1|2013379_2015209_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZX18292.1|2015171_2016230_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX18293.1|2016267_2016729_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZX18294.1|2016813_2017560_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX18295.1|2019050_2022281_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX18296.1|2022347_2023679_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX18297.1|2023931_2024306_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX18298.1|2024408_2025587_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18299.1|2025597_2026188_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX20132.1|2026298_2027105_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX18300.1|2027130_2027925_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX18301.1|2028925_2029900_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18302.1|2030058_2030571_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX18303.1|2030727_2031699_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18304.1|2033443_2034250_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX20133.1|2034246_2035383_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX18305.1|2035498_2036263_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18306.1|2036376_2037147_-	spermidine synthase	NA	NA	NA	NA	NA
AZX18307.1|2037231_2038443_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX18308.1|2038491_2038866_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX18309.1|2038966_2040229_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX18310.1|2040225_2041083_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX18311.1|2041255_2042257_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18312.1|2042708_2043659_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18313.1|2045174_2046374_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX18314.1|2046742_2046979_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX18315.1|2047042_2047210_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX18316.1|2047323_2049219_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX18317.1|2049382_2050333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18318.1|2050431_2051382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	2237850	2299198	4097016	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZX18456.1|2237850_2238801_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18457.1|2238917_2239637_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18458.1|2239809_2240796_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18459.1|2240796_2241279_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX18460.1|2241282_2242566_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX18461.1|2242562_2243501_+	CoA ester lyase	NA	NA	NA	NA	NA
AZX18462.1|2243497_2245207_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX18463.1|2245216_2246464_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX20141.1|2248074_2249364_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX18464.1|2250501_2251275_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX18465.1|2251936_2252680_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18466.1|2252754_2253495_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18467.1|2253690_2254527_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18468.1|2254577_2255348_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX18469.1|2255397_2256450_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX18470.1|2256446_2257073_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX18471.1|2257069_2258116_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX18472.1|2258282_2259299_+	folate-binding protein	NA	NA	NA	NA	NA
AZX20142.1|2259397_2260348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18473.1|2263088_2264378_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX18474.1|2264496_2264967_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX18475.1|2264977_2266186_-	flavohemoprotein	NA	NA	NA	NA	NA
AZX18476.1|2266332_2266797_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX18477.1|2266820_2267771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18478.1|2268755_2269529_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX18479.1|2269525_2270524_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18480.1|2270608_2271385_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX18481.1|2271540_2273208_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX18482.1|2273525_2274650_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18483.1|2274776_2275400_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18484.1|2275396_2277298_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX18485.1|2277346_2278141_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX18486.1|2278153_2279155_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX18487.1|2279151_2279658_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX18488.1|2279650_2280499_-	hydrolase	NA	NA	NA	NA	NA
AZX18489.1|2280596_2281139_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18490.1|2281182_2282133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18491.1|2282288_2282615_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZX18492.1|2282611_2282896_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX18493.1|2282892_2283372_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX18494.1|2283368_2284997_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX18495.1|2284993_2285338_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX18496.1|2285337_2288271_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX18497.1|2289429_2290380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18498.1|2290478_2290775_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18499.1|2290881_2291799_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18500.1|2291803_2292517_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX18501.1|2292530_2293502_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18502.1|2295221_2295602_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18503.1|2295605_2296793_+	MFS transporter	NA	NA	NA	NA	NA
AZX20143.1|2297231_2297954_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX18504.1|2298247_2299198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	2319989	2391143	4097016	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZX18519.1|2319989_2320940_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18520.1|2321492_2323118_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX20148.1|2323167_2324202_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX18521.1|2324204_2325551_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20149.1|2325547_2327062_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX18522.1|2327052_2328063_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18523.1|2328536_2329478_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX18524.1|2329486_2330455_-	AAA family ATPase	NA	NA	NA	NA	NA
AZX18525.1|2331994_2332963_+	transporter	NA	NA	NA	NA	NA
AZX18526.1|2333140_2334130_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18527.1|2334176_2334935_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX18528.1|2335124_2335862_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX18529.1|2335960_2336911_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18530.1|2337095_2337878_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX18531.1|2337871_2338573_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX18532.1|2338812_2339415_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18533.1|2340741_2341692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18534.1|2341688_2343245_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZX18535.1|2343237_2344011_-	oxidoreductase	NA	NA	NA	NA	NA
AZX18536.1|2344069_2345020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18537.1|2345101_2346277_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX18538.1|2346290_2348348_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX18539.1|2348344_2349370_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX18540.1|2349381_2350671_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX18541.1|2350693_2351791_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX18542.1|2351787_2352678_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX18543.1|2352674_2354759_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX18544.1|2354790_2355960_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX18545.1|2356001_2356742_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX18546.1|2356741_2357512_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX18547.1|2358367_2359153_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX18548.1|2359179_2361264_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18549.1|2361431_2363387_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX20150.1|2363710_2364211_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX18550.1|2364309_2365836_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX20151.1|2365973_2366861_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18551.1|2366875_2367829_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX18552.1|2367880_2369971_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZX18553.1|2369986_2370373_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX18554.1|2373066_2373870_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX18555.1|2375163_2376066_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18556.1|2376130_2376907_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX18557.1|2377228_2378278_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18558.1|2378401_2380072_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX18559.1|2380076_2380871_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX18560.1|2380969_2381920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18561.1|2381939_2382845_-	pirin family protein	NA	NA	NA	NA	NA
AZX18562.1|2382922_2383621_-	pirin family protein	NA	NA	NA	NA	NA
AZX18563.1|2383780_2384725_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18564.1|2384734_2386225_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX18565.1|2386221_2387289_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX18566.1|2387352_2388765_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX18567.1|2388950_2390171_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX18568.1|2390192_2391143_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	2432086	2493933	4097016	tRNA,transposase,protease	Planktothrix_phage(14.29%)	60	NA	NA
AZX18607.1|2432086_2433037_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18608.1|2433135_2433744_-	recombination protein RecR	NA	NA	NA	NA	NA
AZX18609.1|2433794_2434121_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX18610.1|2434167_2436393_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX18611.1|2437060_2440465_-	nuclease	NA	NA	NA	NA	NA
AZX18612.1|2440477_2443138_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18613.1|2443341_2444544_-	MFS transporter	NA	NA	NA	NA	NA
AZX18614.1|2445230_2446343_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX18615.1|2446349_2447300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18616.1|2447398_2447800_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX18617.1|2447872_2448451_-|protease	protease	protease	NA	NA	NA	NA
AZX20154.1|2448568_2449057_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX18618.1|2449070_2450003_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX18619.1|2450040_2450928_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX18620.1|2451085_2452780_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX18621.1|2452796_2454053_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX18622.1|2454190_2454736_-	acyl dehydratase	NA	NA	NA	NA	NA
AZX18623.1|2454767_2456327_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX18624.1|2456455_2457208_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX18625.1|2457229_2457922_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX18626.1|2457944_2458736_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18627.1|2458762_2459668_-	agmatinase	NA	NA	NA	NA	NA
AZX18628.1|2459860_2460697_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18629.1|2460788_2461811_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX18630.1|2461947_2463000_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX18631.1|2463004_2464195_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX18632.1|2464197_2464677_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX18633.1|2464862_2465342_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX18634.1|2465349_2465586_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18635.1|2465605_2466007_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX18636.1|2466009_2466261_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX18637.1|2466315_2467197_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX18638.1|2467421_2467868_+	GFA family protein	NA	NA	NA	NA	NA
AZX18639.1|2467952_2469017_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX18640.1|2469153_2469735_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX18641.1|2469969_2471100_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX18642.1|2471277_2472504_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX18643.1|2472562_2473078_+	transporter	NA	NA	NA	NA	NA
AZX18644.1|2473100_2473427_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX18645.1|2473460_2474651_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZX18646.1|2474724_2475129_+	GFA family protein	NA	NA	NA	NA	NA
AZX18647.1|2475345_2476296_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18648.1|2476394_2477165_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX18649.1|2477161_2477833_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX18650.1|2477829_2478471_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX18651.1|2478483_2479404_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX18652.1|2479564_2480725_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18653.1|2480766_2481717_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX18654.1|2482315_2482540_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18655.1|2482704_2484399_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX18656.1|2484520_2484790_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX18657.1|2484905_2485304_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX18658.1|2485314_2486271_-	glutathione synthetase	NA	NA	NA	NA	NA
AZX18659.1|2486407_2486953_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX18660.1|2486973_2488923_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX18661.1|2489310_2490087_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX18662.1|2490092_2490485_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18663.1|2490906_2491857_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18664.1|2491853_2492951_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX18665.1|2492982_2493933_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	2497767	2556011	4097016	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AZX18668.1|2497767_2498718_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18669.1|2499197_2499854_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX18670.1|2499868_2501536_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX18671.1|2501538_2502168_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18672.1|2502379_2503474_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18673.1|2503618_2504431_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX18674.1|2504434_2506138_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX18675.1|2506188_2507319_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX18676.1|2507505_2508582_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX20155.1|2508663_2509314_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX18677.1|2509328_2510762_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX18678.1|2511015_2511834_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18679.1|2511830_2512535_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX18680.1|2513434_2514550_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18681.1|2514583_2514958_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18682.1|2514980_2516138_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX18683.1|2516150_2516384_-	lipoprotein	NA	NA	NA	NA	NA
AZX18684.1|2517018_2519988_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX18685.1|2520002_2520212_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX18686.1|2520363_2520993_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18687.1|2520989_2523107_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX18688.1|2523103_2523784_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX18689.1|2523780_2524341_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX18690.1|2524347_2525445_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX18691.1|2525582_2526191_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX18692.1|2526187_2527480_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX18693.1|2527493_2528036_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX18694.1|2528045_2528882_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX18695.1|2528915_2529977_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX18696.1|2530018_2531071_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX18697.1|2531086_2531389_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18698.1|2531530_2532481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18699.1|2532659_2534354_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX18700.1|2534350_2535436_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX18701.1|2535483_2536383_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18702.1|2536393_2537038_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX18703.1|2538059_2541302_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX18704.1|2541312_2542410_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX18705.1|2542672_2543656_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX18706.1|2543754_2544705_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18707.1|2544803_2545754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18708.1|2545763_2546453_-	VIT family protein	NA	NA	NA	NA	NA
AZX18709.1|2546512_2546950_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX18710.1|2546995_2547889_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX18711.1|2547936_2549109_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX18712.1|2549105_2550260_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX18713.1|2550456_2550807_-	RnfH family protein	NA	NA	NA	NA	NA
AZX18714.1|2550796_2551231_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX18715.1|2551247_2552198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18716.1|2552345_2552813_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX18717.1|2552793_2553951_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX18718.1|2554016_2554943_-	paraslipin	NA	NA	NA	NA	NA
AZX18719.1|2555060_2556011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	2598291	2664791	4097016	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX18758.1|2598291_2599242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18759.1|2599611_2600184_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX18760.1|2600186_2601197_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX18761.1|2601189_2601690_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX18762.1|2601700_2602042_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX18763.1|2602053_2602845_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX18764.1|2602861_2603131_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX18765.1|2603153_2603942_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX20159.1|2603988_2605005_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX18766.1|2605221_2606664_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX18767.1|2606842_2608462_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX18768.1|2608582_2610403_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX18769.1|2610481_2612014_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX18770.1|2612047_2613694_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX18771.1|2613763_2614786_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX18772.1|2614803_2615937_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX18773.1|2615939_2616629_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX18774.1|2616628_2617414_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX18775.1|2617457_2618222_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX18776.1|2618260_2619682_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX18777.1|2619747_2620452_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX18778.1|2620499_2620919_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX18779.1|2620931_2621339_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX20160.1|2621522_2622233_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX18780.1|2622359_2622650_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX18781.1|2622667_2623150_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX18782.1|2627655_2628810_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX20161.1|2629115_2630132_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX18783.1|2630378_2631167_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX18784.1|2631233_2631914_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX18785.1|2631910_2632681_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX18786.1|2632779_2633730_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18787.1|2633785_2634703_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX18788.1|2634713_2635892_-	mandelate racemase	NA	NA	NA	NA	NA
AZX18789.1|2635911_2636907_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18790.1|2638495_2639104_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX18791.1|2639091_2640132_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX18792.1|2640149_2641112_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18793.1|2641108_2642302_-	CoA transferase	NA	NA	NA	NA	NA
AZX18794.1|2642298_2643096_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX18795.1|2643121_2644108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX18796.1|2644126_2646166_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX20162.1|2646367_2647048_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18797.1|2647061_2647973_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX18798.1|2647969_2648548_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX18799.1|2648686_2649592_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18800.1|2649599_2653019_+	nuclease	NA	NA	NA	NA	NA
AZX18801.1|2653006_2655607_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX18802.1|2656562_2657195_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18803.1|2657588_2658347_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18804.1|2658343_2659546_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX18805.1|2659733_2660684_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18806.1|2661591_2662737_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX20163.1|2662756_2663479_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX18807.1|2663595_2663775_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18808.1|2663840_2664791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	2868903	2950178	4097016	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZX18972.1|2868903_2869854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX18973.1|2869850_2870753_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX18974.1|2870840_2871599_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX18975.1|2871611_2872760_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX18976.1|2872800_2874228_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX18977.1|2874457_2875672_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX18978.1|2875717_2878588_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX18979.1|2880998_2881487_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX18980.1|2881612_2884309_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX18981.1|2884463_2886746_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX18982.1|2886908_2887541_+	fimbrial protein	NA	NA	NA	NA	NA
AZX18983.1|2887639_2888590_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX18984.1|2888636_2889191_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX18985.1|2889258_2890104_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX18986.1|2890173_2891142_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX18987.1|2891141_2892938_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18988.1|2894837_2898764_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX18989.1|2899054_2899231_-	hypothetical protein	NA	NA	NA	NA	NA
AZX18990.1|2899499_2902730_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX18991.1|2903011_2903839_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX18992.1|2903872_2904568_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX18993.1|2904560_2905841_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX18994.1|2905850_2906828_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20179.1|2906809_2908510_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX18995.1|2908612_2909716_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX18996.1|2909746_2910502_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX18997.1|2910508_2912029_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX18998.1|2912071_2912374_+	hypothetical protein	NA	NA	NA	NA	NA
AZX18999.1|2912370_2913003_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19000.1|2913081_2914947_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX19001.1|2914943_2915759_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX19002.1|2915766_2916882_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX19003.1|2917786_2918665_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX19004.1|2918664_2919489_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX19005.1|2919656_2920607_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19006.1|2920789_2923669_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX19007.1|2923650_2924427_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX19008.1|2924519_2925983_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX19009.1|2925979_2926351_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX19010.1|2926368_2927682_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19011.1|2927718_2928177_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX19012.1|2928289_2929240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19013.1|2929236_2930250_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX19014.1|2930389_2931376_+	homoserine kinase	NA	NA	NA	NA	NA
AZX19015.1|2931419_2932220_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19016.1|2933022_2933973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19017.1|2934124_2934727_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19018.1|2934745_2935378_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX19019.1|2935615_2937502_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX19020.1|2937520_2938363_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX19021.1|2938359_2939718_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX19022.1|2939938_2940733_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX19023.1|2940963_2942457_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX19024.1|2942692_2944774_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX19025.1|2944968_2946009_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX19026.1|2946143_2947160_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX19027.1|2947181_2948039_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX20180.1|2948083_2948860_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX19028.1|2949227_2950178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	2959246	3008184	4097016	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZX19036.1|2959246_2959660_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX19037.1|2959700_2960018_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX19038.1|2960102_2960819_-	hypothetical protein	NA	NA	NA	NA	NA
AZX20181.1|2961082_2962504_+	siroheme synthase	NA	NA	NA	NA	NA
AZX19039.1|2962570_2965318_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZX20182.1|2965650_2966667_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX20183.1|2967002_2967644_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX19040.1|2967734_2969171_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX19041.1|2969328_2970402_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX19042.1|2970398_2971535_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX19043.1|2971679_2972024_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX19044.1|2972090_2973971_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX19045.1|2974020_2974956_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX20184.1|2975288_2976305_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX19046.1|2977242_2978670_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX19047.1|2978666_2979689_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX19048.1|2979678_2980152_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX19049.1|2980277_2981180_+	transporter associated domain protein	NA	NA	NA	NA	NA
AZX19050.1|2981176_2982820_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX20185.1|2982816_2983824_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX20186.1|2984654_2985671_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX19051.1|2985770_2986403_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX19052.1|2986411_2986801_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX19053.1|2986853_2987906_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX19054.1|2988769_2990476_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX19055.1|2990549_2991050_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX19056.1|2991064_2993122_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX19057.1|2993148_2993442_-	response regulator	NA	NA	NA	NA	NA
AZX19058.1|2993543_2994491_-	motility protein MotB	NA	NA	NA	NA	NA
AZX19059.1|2994503_2995379_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX19060.1|2995499_2996060_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX19061.1|2996094_2996418_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX19062.1|2996853_2997591_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX19063.1|2997889_2998840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19064.1|2999083_2999347_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX19065.1|2999420_2999702_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19066.1|2999718_3000579_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX19067.1|3000575_3000911_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19068.1|3000964_3001615_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX19069.1|3003295_3004240_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19070.1|3004285_3004603_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19071.1|3004605_3005544_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX19072.1|3005721_3006207_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX19073.1|3006225_3006774_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX19074.1|3007050_3008184_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	3019791	3092285	4097016	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZX19083.1|3019791_3020742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19084.1|3020784_3021960_+	flagellin FliC	NA	NA	NA	NA	NA
AZX19085.1|3022181_3023972_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX19086.1|3023984_3025646_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX19087.1|3025658_3028364_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX19088.1|3028656_3030411_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX19089.1|3030407_3031034_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX19090.1|3031030_3031882_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX19091.1|3031957_3034072_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX19092.1|3034222_3034873_+	SCO family protein	NA	NA	NA	NA	NA
AZX19093.1|3035018_3035270_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX19094.1|3035339_3036722_-	multidrug transporter	NA	NA	NA	NA	NA
AZX19095.1|3036718_3039898_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX20188.1|3040705_3041623_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19096.1|3041674_3042406_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX19097.1|3042465_3043038_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX20189.1|3044546_3045563_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX19098.1|3045700_3046750_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX19099.1|3046854_3047805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19100.1|3047900_3048626_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX19101.1|3048836_3049217_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX19102.1|3049522_3050395_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX19103.1|3050402_3050783_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19104.1|3050936_3052211_-	radical SAM protein	NA	NA	NA	NA	NA
AZX20190.1|3053698_3054607_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX19105.1|3055404_3056469_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX19106.1|3058305_3059340_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX19107.1|3059529_3060171_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX19108.1|3060253_3062080_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX19109.1|3062323_3063253_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX19110.1|3063252_3064002_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX19111.1|3064073_3064988_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX19112.1|3065007_3066153_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX19113.1|3066213_3067125_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX19114.1|3067205_3068156_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19115.1|3068254_3068839_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX19116.1|3068873_3069863_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX19117.1|3069859_3070801_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX19118.1|3070797_3072018_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX19119.1|3072060_3072375_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX19120.1|3072566_3072926_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX19121.1|3072927_3074658_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX19122.1|3074830_3075502_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX19123.1|3075516_3076845_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX19124.1|3076841_3077741_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX19125.1|3077827_3078913_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX19126.1|3078905_3080039_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX19127.1|3080038_3082720_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX19128.1|3083090_3083672_+	OmpA family protein	NA	NA	NA	NA	NA
AZX19129.1|3083749_3084523_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX19130.1|3084519_3085197_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX19131.1|3085412_3086594_+	MFS transporter	NA	NA	NA	NA	NA
AZX19132.1|3087070_3087328_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19133.1|3087366_3087549_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX19134.1|3087578_3088529_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX20191.1|3088658_3089051_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX19135.1|3089327_3090239_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX19136.1|3090363_3091338_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX19137.1|3091334_3092285_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	3105792	3159310	4097016	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZX19148.1|3105792_3106743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19149.1|3106855_3107107_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19150.1|3107300_3107516_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19151.1|3107612_3108731_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX19152.1|3108850_3109063_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19153.1|3109222_3109444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19154.1|3109496_3110447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19155.1|3111623_3112994_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX19156.1|3113026_3113818_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19157.1|3113830_3114886_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19158.1|3114911_3115787_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19159.1|3115892_3116141_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19160.1|3116175_3117630_-	carboxylase	NA	NA	NA	NA	NA
AZX19161.1|3117626_3118148_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX19162.1|3118176_3119529_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX19163.1|3119752_3122641_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX19164.1|3124785_3126087_+	phospholipase	NA	NA	NA	NA	NA
AZX19165.1|3126101_3126818_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX19166.1|3127099_3127780_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX19167.1|3127791_3127959_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19168.1|3128067_3128220_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19169.1|3128307_3128967_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX19170.1|3129347_3131198_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX19171.1|3131194_3132145_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19172.1|3133308_3135024_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX19173.1|3135034_3135526_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX19174.1|3135598_3136615_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX19175.1|3136782_3137562_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX19176.1|3137580_3138108_-	lipoprotein	NA	NA	NA	NA	NA
AZX19177.1|3138106_3138313_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19178.1|3138401_3138671_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX19179.1|3138761_3140921_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX19180.1|3141041_3141761_+	lipoprotein	NA	NA	NA	NA	NA
AZX19181.1|3141757_3142708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19182.1|3142848_3144066_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX19183.1|3144059_3144671_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX19184.1|3145304_3146282_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX19185.1|3146425_3147172_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX19186.1|3147193_3147640_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX19187.1|3148427_3150659_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX19188.1|3150681_3151482_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19189.1|3151763_3152996_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX19190.1|3153106_3154096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX19191.1|3154126_3155515_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX19192.1|3157113_3158097_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX20193.1|3158293_3159310_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	3223768	3296930	4097016	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZX19246.1|3223768_3224719_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19247.1|3224715_3225735_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX19248.1|3225744_3228453_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX19249.1|3228600_3229257_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX19250.1|3229355_3230306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19251.1|3230411_3231347_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX19252.1|3231546_3233241_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX19253.1|3233275_3234202_+	VOC family protein	NA	NA	NA	NA	NA
AZX20196.1|3234270_3235368_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19254.1|3235386_3236250_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX19255.1|3236261_3237044_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX19256.1|3237040_3238159_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX19257.1|3238155_3239688_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX19258.1|3239728_3240736_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX19259.1|3240880_3241603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19260.1|3241618_3242641_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX19261.1|3242957_3243692_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19262.1|3243776_3245522_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX19263.1|3245518_3246271_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX19264.1|3246315_3247272_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX19265.1|3247360_3247927_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19266.1|3247934_3248795_-	aminotransferase	NA	NA	NA	NA	NA
AZX19267.1|3248824_3249568_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX19268.1|3249584_3250268_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX19269.1|3251105_3252020_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX19270.1|3252084_3252993_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19271.1|3253083_3254508_-	protein CyaE	NA	NA	NA	NA	NA
AZX19272.1|3254509_3255832_-	protein CyaD	NA	NA	NA	NA	NA
AZX19273.1|3255828_3257967_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX19274.1|3258044_3263165_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX20197.1|3263351_3263531_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19275.1|3263613_3264201_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX19276.1|3264216_3265698_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX19277.1|3265752_3267606_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19278.1|3267868_3269206_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX19279.1|3269240_3271238_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX19280.1|3271255_3273304_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX19281.1|3273434_3274301_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19282.1|3274569_3275535_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX19283.1|3275649_3276798_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX19284.1|3277222_3277534_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX19285.1|3277567_3277828_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX19286.1|3277977_3279111_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX19287.1|3279181_3280318_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX19288.1|3280483_3281278_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX19289.1|3281340_3281784_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX19290.1|3281899_3282850_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19291.1|3282836_3283025_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19292.1|3282972_3283380_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX19293.1|3283452_3285648_+	DNA methylase	NA	NA	NA	NA	NA
AZX19294.1|3285869_3286820_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19295.1|3286779_3287304_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX19296.1|3287435_3288407_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19297.1|3288526_3290971_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX19298.1|3290986_3291577_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX19299.1|3291820_3292771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19300.1|3292928_3294194_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX19301.1|3294227_3295325_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX19302.1|3295979_3296930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	3308217	3408330	4097016	tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX19313.1|3308217_3309168_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19314.1|3309899_3310277_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX19315.1|3310261_3310963_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19316.1|3311106_3311799_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX19317.1|3311798_3312902_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX19318.1|3313011_3315384_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX19319.1|3315380_3316940_+	chaperone SurA	NA	NA	NA	NA	NA
AZX19320.1|3316964_3317762_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX19321.1|3317793_3318939_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX19322.1|3319043_3320486_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX20198.1|3320488_3321577_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19323.1|3323855_3324806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19324.1|3324792_3325011_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19325.1|3325935_3326493_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX19326.1|3326468_3326819_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19327.1|3326987_3327782_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX19328.1|3327778_3328828_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX19329.1|3328827_3329517_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX19330.1|3329603_3330101_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX19331.1|3330132_3331449_-	protein TolB	NA	NA	NA	NA	NA
AZX19332.1|3331465_3332440_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX19333.1|3332476_3332935_-	protein TolR	NA	NA	NA	NA	NA
AZX19334.1|3332934_3333615_-	protein TolQ	NA	NA	NA	NA	NA
AZX19335.1|3333617_3334046_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX19336.1|3334098_3335829_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX19337.1|3335894_3336467_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX19338.1|3336447_3337134_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX19339.1|3337489_3338161_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX19340.1|3338167_3338368_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19341.1|3338710_3338992_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19342.1|3338988_3339522_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX19343.1|3339503_3340055_-	lysozyme	NA	NA	NA	NA	NA
AZX19344.1|3340033_3340276_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19345.1|3340280_3341093_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19346.1|3341092_3341356_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19347.1|3341574_3341991_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19348.1|3341995_3345952_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX19349.1|3345944_3346334_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX19350.1|3346330_3346864_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX19351.1|3346931_3347291_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19352.1|3347300_3349913_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX19353.1|3349938_3350229_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX19354.1|3350246_3350576_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX19355.1|3350585_3351104_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX19356.1|3351358_3351859_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX19357.1|3351866_3352289_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19358.1|3352285_3352684_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX19359.1|3352680_3353076_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX19360.1|3353075_3353276_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19361.1|3353277_3353760_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX19362.1|3353822_3354074_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19363.1|3354083_3354731_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX19364.1|3354748_3355699_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19365.1|3356127_3356730_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX19366.1|3356852_3357095_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX20199.1|3357100_3358156_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX19367.1|3358184_3359603_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX19368.1|3359605_3360883_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX19369.1|3360869_3361319_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX19370.1|3361994_3362945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19371.1|3362962_3363184_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19372.1|3363198_3363897_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19373.1|3363889_3364210_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20200.1|3364689_3365301_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX19374.1|3365366_3365579_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19375.1|3365830_3366781_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19376.1|3366879_3367953_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19377.1|3368120_3368915_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX19378.1|3368954_3369479_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX19379.1|3369471_3371214_-	sulfite reductase	NA	NA	NA	NA	NA
AZX19380.1|3371423_3372182_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX19381.1|3372184_3372892_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX19382.1|3372908_3373790_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX19383.1|3373800_3374559_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX20201.1|3374527_3375283_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19384.1|3375352_3376771_+	amidase	NA	NA	NA	NA	NA
AZX19385.1|3376792_3377443_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX19386.1|3377576_3377912_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX19387.1|3378000_3378951_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19388.1|3379027_3380848_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX19389.1|3380852_3381926_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX19390.1|3382048_3383017_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX19391.1|3383090_3384002_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX19392.1|3384020_3384593_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX19393.1|3384673_3385222_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX19394.1|3385221_3386811_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX19395.1|3386880_3387120_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX19396.1|3387160_3388192_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX19397.1|3388251_3389433_-	monooxygenase	NA	NA	NA	NA	NA
AZX19398.1|3389529_3389982_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19399.1|3389991_3391332_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX19400.1|3391648_3392686_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19401.1|3393067_3393427_+	hypothetical protein	NA	NA	NA	NA	NA
AZX20202.1|3393510_3394452_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19402.1|3394526_3395477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19403.1|3395770_3396865_+	porin	NA	NA	NA	NA	NA
AZX19404.1|3396946_3397828_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX19405.1|3397849_3398689_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX19406.1|3398764_3400282_+	peptidase	NA	NA	NA	NA	NA
AZX19407.1|3400378_3401479_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX19408.1|3401495_3401918_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX19409.1|3401940_3402153_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX19410.1|3402199_3403120_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX20203.1|3403383_3404052_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX19411.1|3404054_3404384_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX19412.1|3404590_3406024_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX19413.1|3406035_3406419_-	thioredoxin	NA	NA	NA	NA	NA
AZX19414.1|3406480_3407281_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19415.1|3407379_3408330_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025357	Bordetella pertussis strain F578 chromosome, complete genome	4097016	3996084	4060996	4097016	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX19943.1|3996084_3996570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19944.1|3996788_3997769_+	protein BugT	NA	NA	NA	NA	NA
AZX19945.1|3998035_3998845_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX19946.1|3998884_3999565_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX19947.1|3999558_4000017_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX19948.1|4000028_4000391_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX19949.1|4000473_4001157_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX19950.1|4001212_4001521_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX19951.1|4001539_4001854_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX19952.1|4001850_4004325_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX19953.1|4004332_4005724_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX19954.1|4005720_4005906_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX19955.1|4005884_4006586_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX19956.1|4006582_4007404_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX20226.1|4007384_4008509_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX19957.1|4008501_4009521_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX19958.1|4009726_4010761_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX20227.1|4010861_4011653_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX19959.1|4011735_4012110_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX19960.1|4012087_4013497_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX19961.1|4013489_4014872_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX19962.1|4015206_4016811_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX19963.1|4016846_4017860_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX19964.1|4017870_4018797_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX19965.1|4019187_4020138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19966.1|4020307_4021534_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX19967.1|4021733_4022600_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX19968.1|4022592_4023555_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX19969.1|4023655_4024606_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19970.1|4024704_4025655_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19971.1|4025753_4026704_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX19972.1|4026700_4028194_-	RND transporter	NA	NA	NA	NA	NA
AZX19973.1|4028190_4031298_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX19974.1|4031294_4034363_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX19975.1|4034359_4035610_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX19976.1|4035790_4036552_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX19977.1|4036584_4037235_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX19978.1|4037237_4038077_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX19979.1|4038317_4039061_+	hypothetical protein	NA	NA	NA	NA	NA
AZX19980.1|4039143_4039491_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX19981.1|4039588_4040431_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX19982.1|4040475_4041363_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX19983.1|4041389_4041578_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX19984.1|4041675_4043133_+	MFS transporter	NA	NA	NA	NA	NA
AZX19985.1|4043119_4044646_+	glycerol kinase	NA	NA	NA	NA	NA
AZX19986.1|4044664_4045132_-	hypothetical protein	NA	NA	NA	NA	NA
AZX19987.1|4045131_4046154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX19988.1|4046274_4047015_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX19989.1|4047069_4048170_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX19990.1|4048171_4049362_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX19991.1|4049481_4050498_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX19992.1|4050816_4051488_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX19993.1|4051484_4052393_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX19994.1|4052604_4053252_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX19995.1|4057103_4058180_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX19996.1|4058190_4059000_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX19997.1|4059089_4059863_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX19998.1|4060045_4060996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
