The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	34624	78581	4103234	protease,transposase,tRNA	Synechococcus_phage(25.0%)	39	NA	NA
AZX05876.1|34624_35575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX05877.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AZX05878.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX05879.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX05880.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX05881.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX05882.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX05883.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX05884.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX05885.1|45110_45746_+	hypothetical protein	NA	NA	NA	NA	NA
AZX05886.1|45717_45954_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX05887.1|46081_46975_+	hypothetical protein	NA	NA	NA	NA	NA
AZX05888.1|48144_49392_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX05889.1|49388_50003_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX05890.1|50138_51089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX05891.1|51131_52388_+	MFS transporter	NA	NA	NA	NA	NA
AZX05892.1|53619_54354_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX05893.1|54359_54950_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX05894.1|54974_55664_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX05895.1|55660_56422_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX05896.1|56501_57401_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX05897.1|57494_58445_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX05898.1|59245_60472_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX05899.1|60471_60891_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX05900.1|61074_62016_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05901.1|62439_63276_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05902.1|63470_64052_-|protease	protease	protease	NA	NA	NA	NA
AZX05903.1|64064_64382_-	ferredoxin	NA	NA	NA	NA	NA
AZX05904.1|64485_65544_-	oxidoreductase	NA	NA	NA	NA	NA
AZX05905.1|65578_66850_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX05906.1|67479_68661_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05907.1|70125_70440_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX05908.1|71632_73540_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX05909.1|73701_74322_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX05910.1|74353_74935_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX05911.1|75023_75275_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09228.1|75276_76026_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05912.1|76224_77634_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX05913.1|77630_78581_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	107423	175249	4103234	transposase,tRNA	Bacillus_phage(22.22%)	58	NA	NA
AZX05941.1|107423_108374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX05942.1|109273_110467_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX05943.1|110548_111178_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX05944.1|111239_111923_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX05945.1|111932_113615_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX09230.1|113902_114250_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX05946.1|114340_114658_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09231.1|114940_115957_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX05947.1|116032_116833_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX05948.1|116829_117705_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX05949.1|117715_119008_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX05950.1|119050_120091_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX05951.1|120196_121018_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX05952.1|121118_122069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX05953.1|122167_123073_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AZX05954.1|123069_123903_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX09232.1|124739_125750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09233.1|125746_126136_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05955.1|127029_128283_+	amidase	NA	NA	NA	NA	NA
AZX05956.1|128373_130074_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX05957.1|130500_131148_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05958.1|131146_132586_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AZX05959.1|132678_132981_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZX05960.1|133008_133887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX05961.1|135153_136104_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX05962.1|136522_138031_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
AZX05963.1|138777_142740_+	FAD-linked oxidase	NA	NA	NA	NA	NA
AZX05964.1|142792_143575_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX05965.1|143662_144886_-	CoA transferase	NA	NA	NA	NA	NA
AZX09234.1|144869_145802_-	lipase	NA	NA	NA	NA	NA
AZX05966.1|145807_146620_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX05967.1|146640_147084_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05968.1|147102_147861_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09235.1|147933_148857_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05969.1|149023_149806_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX05970.1|150572_151553_-	carboxylase	NA	NA	NA	NA	NA
AZX05971.1|151549_152278_-	allophanate hydrolase subunit 1	NA	NA	NA	NA	NA
AZX05972.1|152302_152734_-	glyoxalase	NA	NA	NA	NA	NA
AZX05973.1|152835_153711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX05974.1|153762_154983_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
AZX05975.1|155066_155528_-	metal-binding protein	NA	NA	NA	NA	NA
AZX05976.1|155633_157031_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX05977.1|157027_157705_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
AZX05978.1|157760_159071_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
AZX05979.1|159082_159781_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
AZX05980.1|159944_160721_+	ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	NA	NA	NA	NA	NA
AZX05981.1|160886_161909_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
AZX05982.1|162137_162773_+	hypothetical protein	NA	NA	NA	NA	NA
AZX05983.1|162769_164332_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
AZX05984.1|164890_165841_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX05985.1|167284_168187_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05986.1|168164_168794_-	LemA family protein	NA	NA	NA	NA	NA
AZX05987.1|169124_170507_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX05988.1|170540_171170_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX05989.1|171218_172826_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX05990.1|172850_173534_+	hypothetical protein	NA	NA	NA	NA	NA
AZX05991.1|173615_174092_-	bacterioferritin	NA	NA	NA	NA	NA
AZX05992.1|174298_175249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	178631	236267	4103234	protease,transposase,tRNA	Klosneuvirus(14.29%)	48	NA	NA
AZX05996.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX05997.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
AZX05998.1|181330_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX05999.1|182422_184327_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX06000.1|184323_187998_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX06001.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX06002.1|188629_189052_-	glyoxalase	NA	NA	NA	NA	NA
AZX06003.1|189079_189499_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX09236.1|189527_189974_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX06004.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06005.1|190752_193023_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX06006.1|193071_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX06007.1|194402_195353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06008.1|195398_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX06009.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX06010.1|197375_198476_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX06011.1|198557_198932_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX06012.1|198991_201856_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX06013.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06014.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
AZX06015.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX06016.1|206738_207062_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX06017.1|207166_208216_-	cyclase	NA	NA	NA	NA	NA
AZX06018.1|208212_209037_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX06019.1|209037_209334_-	YciI family protein	NA	NA	NA	NA	NA
AZX06020.1|209359_209635_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX06021.1|209691_210336_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX06022.1|210335_211022_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX09237.1|211151_212003_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06023.1|212053_212779_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX06024.1|212810_214160_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX06025.1|214271_215204_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX06026.1|215661_218457_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX06027.1|219050_221993_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX06028.1|222064_222784_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX06029.1|222822_223371_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX06030.1|223525_224425_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX06031.1|224449_225400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06032.1|225386_225566_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06033.1|225618_226314_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06034.1|226330_227743_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX06035.1|227855_229286_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX06036.1|229327_231241_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZX06037.1|231559_232126_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZX06038.1|232216_233218_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZX06039.1|233332_234283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06040.1|234369_235320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06041.1|235316_236267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	250681	303017	4103234	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZX06053.1|250681_251623_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX06054.1|251619_253509_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX06055.1|253595_254234_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09238.1|254376_255621_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX06056.1|255692_256229_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX06057.1|256380_257772_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX06058.1|257788_258769_-	AEC family transporter	NA	NA	NA	NA	NA
AZX06059.1|258904_259888_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX06060.1|259952_260852_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06061.1|260958_262713_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX06062.1|262720_263845_-	CoA transferase	NA	NA	NA	NA	NA
AZX06063.1|263858_264839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX06064.1|265569_266520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06065.1|267079_267625_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06066.1|267708_269328_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX06067.1|269343_270498_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX06068.1|270511_270637_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX06069.1|270633_272385_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX06070.1|272381_274061_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX06071.1|274096_274672_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX06072.1|275814_276093_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX06073.1|277136_278087_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06074.1|278073_278289_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06075.1|278364_278526_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX06076.1|278533_278674_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06077.1|279192_279642_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX06078.1|279651_280263_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX06079.1|280421_281276_-	cytochrome c1	NA	NA	NA	NA	NA
AZX06080.1|281295_282678_-	cytochrome b	NA	NA	NA	NA	NA
AZX06081.1|282742_283384_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX06082.1|283523_283982_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX06083.1|284006_284783_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX09239.1|284836_285973_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX06084.1|285969_286920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06085.1|287018_287645_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX06086.1|287667_288594_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX06087.1|288602_290189_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06088.1|290185_291190_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZX06089.1|291389_292250_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX06090.1|292281_293283_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX06091.1|293353_294163_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX06092.1|294240_296100_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX06093.1|296228_297431_-	MFS transporter	NA	NA	NA	NA	NA
AZX06094.1|297544_298426_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06095.1|299928_300489_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZX06096.1|300548_301499_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06097.1|301690_301951_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06098.1|302066_303017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	466023	590773	4103234	transposase,tRNA	Acinetobacter_phage(22.22%)	105	NA	NA
AZX06238.1|466023_468399_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX06239.1|468497_469448_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06240.1|470170_471445_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX06241.1|471531_472614_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZX06242.1|472624_473437_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZX06243.1|473473_473800_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZX06244.1|473804_474365_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZX06245.1|474605_475598_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX06246.1|475616_476612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06247.1|476627_478004_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZX06248.1|477996_480378_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX09254.1|480394_480784_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09255.1|480910_481141_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06249.1|481245_482196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06250.1|482294_483245_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX06251.1|483241_484114_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX06252.1|485044_486331_+	cytochrome c	NA	NA	NA	NA	NA
AZX06253.1|486384_487311_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX06254.1|487329_487794_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX06255.1|488636_489428_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX06256.1|489459_490080_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX06257.1|490076_490706_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX06258.1|490718_491327_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX06259.1|491323_492313_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX06260.1|492418_493633_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX06261.1|495584_496535_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09256.1|497968_499255_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06262.1|499420_499729_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX06263.1|499729_500395_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX06264.1|500435_502226_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX06265.1|502338_503199_+	endonuclease	NA	NA	NA	NA	NA
AZX06266.1|503195_504401_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX06267.1|504397_505282_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX06268.1|506798_507233_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX06269.1|507195_508194_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06270.1|508305_509451_+	transporter	NA	NA	NA	NA	NA
AZX06271.1|509525_510854_+	amidase	NA	NA	NA	NA	NA
AZX06272.1|510887_511478_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX06273.1|511767_512562_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06274.1|513731_514466_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX09257.1|514472_515300_-	copper resistance protein B	NA	NA	NA	NA	NA
AZX06275.1|515346_517122_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX06276.1|517164_517662_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06277.1|517958_518909_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06278.1|519007_519958_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06279.1|520298_521249_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06280.1|523572_524721_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX06281.1|524765_525428_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06282.1|525541_526534_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX06283.1|526530_527268_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX06284.1|527347_528169_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX06285.1|528257_529121_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX06286.1|529247_529484_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06287.1|531458_532493_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX06288.1|532551_533529_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX06289.1|533536_534457_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX06290.1|534453_536154_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX06291.1|536156_537062_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX06292.1|537105_538239_+	peptidase	NA	NA	NA	NA	NA
AZX06293.1|539415_541485_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZX06294.1|541527_543630_-	primosomal protein N'	NA	NA	NA	NA	NA
AZX06295.1|543936_545013_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZX09258.1|545088_545973_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06296.1|546155_546578_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZX06297.1|546587_547988_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZX06298.1|548030_548936_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZX06299.1|549034_550576_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZX06300.1|550610_551150_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZX06301.1|551162_551633_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZX06302.1|551770_552013_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZX06303.1|552129_553011_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZX09259.1|553083_553404_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX06304.1|554255_555206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX06305.1|556529_557306_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX06306.1|557340_559113_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX06307.1|559114_560017_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX06308.1|560141_560501_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX06309.1|560532_561495_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX06310.1|561593_562544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06311.1|562556_563492_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX06312.1|563551_564391_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX06313.1|564387_565557_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX06314.1|565553_566843_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06315.1|566885_567260_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX06316.1|567365_568103_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX06317.1|568110_568815_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX06318.1|569078_570599_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX06319.1|570654_571218_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX06320.1|571236_572268_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX06321.1|572264_573053_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX06322.1|573228_574218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06323.1|575974_576925_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06324.1|578147_579050_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06325.1|579051_579906_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX06326.1|579952_581062_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX06327.1|581072_581591_-	flavin reductase	NA	NA	NA	NA	NA
AZX06328.1|581620_582253_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX06329.1|582324_582984_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX06330.1|582980_584201_-	MFS transporter	NA	NA	NA	NA	NA
AZX06331.1|584469_585342_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX06332.1|585497_586235_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06333.1|586237_587833_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX09260.1|587964_588954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX06334.1|588950_589661_+	oxidoreductase	NA	NA	NA	NA	NA
AZX09261.1|589756_590773_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	608517	653589	4103234	transposase,tRNA	Escherichia_phage(20.0%)	38	NA	NA
AZX09262.1|608517_609534_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX06345.1|609618_609870_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX06346.1|609873_610689_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX06347.1|610801_611680_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX06348.1|611791_613555_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX06349.1|613670_615011_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX06350.1|616080_617505_-	ATP-binding protein	NA	NA	NA	NA	NA
AZX06351.1|617504_618206_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZX06352.1|619710_620661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06353.1|620729_621728_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX06354.1|621732_622413_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX06355.1|622550_622943_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX09263.1|623050_624067_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX06356.1|624306_625092_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX06357.1|625186_626596_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX06358.1|626606_627407_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX06359.1|627427_628198_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX06360.1|628240_628708_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX06361.1|628704_629655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06362.1|631603_632482_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX06363.1|633408_636387_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06364.1|636385_636754_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06365.1|636740_637691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06366.1|637687_638776_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06367.1|638811_639675_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX06368.1|640814_641204_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX06369.1|641207_641990_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX06370.1|642023_642776_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX06371.1|643084_644224_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06372.1|644220_645012_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX06373.1|645008_645758_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX06374.1|645754_646627_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX06375.1|646626_647628_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX06376.1|647624_648788_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX06377.1|648813_649497_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06378.1|649450_650785_+	CoA ligase	NA	NA	NA	NA	NA
AZX06379.1|650777_651872_+	CoA transferase	NA	NA	NA	NA	NA
AZX09264.1|652638_653589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	672500	749809	4103234	protease,integrase,transposase,tRNA	Bacillus_phage(20.0%)	59	719637:719655	739525:739543
AZX06397.1|672500_673451_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06398.1|673549_675025_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX06399.1|676612_677500_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX06400.1|677502_678444_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX06401.1|678489_680055_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09265.1|681832_683116_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZX06402.1|683340_684798_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZX06403.1|684761_685265_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZX06404.1|685289_686261_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZX06405.1|686313_686751_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX06406.1|686874_687543_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZX06407.1|688271_689375_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX06408.1|689480_690755_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX06409.1|690766_691792_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX06410.1|691793_693164_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06411.1|693164_694301_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX06412.1|694347_696273_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZX06413.1|696269_697391_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX06414.1|697387_698542_+	glycosyl transferase	NA	NA	NA	NA	NA
AZX06415.1|698538_699669_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX06416.1|699676_701242_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX06417.1|701248_702631_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZX06418.1|702909_703521_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06419.1|703612_705028_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX06420.1|705045_705756_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX06421.1|705752_707075_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZX06422.1|707154_709116_+	sulfatase	NA	NA	NA	NA	NA
AZX06423.1|709241_710555_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZX06424.1|710663_711962_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZX06425.1|712144_713053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06426.1|713062_713272_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZX06427.1|713283_714963_-	oxidoreductase	NA	NA	NA	NA	NA
AZX06428.1|715064_716018_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX06429.1|716108_716936_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZX06430.1|716934_718821_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX06431.1|718817_719417_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZX06432.1|719465_720365_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719637:719655	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX09266.1|720591_721524_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZX09267.1|721646_722261_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZX06433.1|722338_722986_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX06434.1|722982_723765_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX06435.1|723837_724929_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX06436.1|725208_726336_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX06437.1|726677_727724_+	Fic family protein	NA	NA	NA	NA	NA
AZX09268.1|727734_727875_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX06438.1|727871_730991_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX06439.1|730992_733944_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX06440.1|733959_735171_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX06441.1|735167_735368_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06442.1|735354_736305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06443.1|736321_736816_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX06444.1|736819_737077_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06445.1|737101_738532_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX06446.1|738613_738898_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZX06447.1|739681_740632_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
739525:739543	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX06448.1|741050_743615_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX06449.1|743659_745513_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06450.1|745845_747417_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX06451.1|748858_749809_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	1004099	1061762	4103234	transposase	Bacillus_virus(22.22%)	54	NA	NA
AZX06654.1|1004099_1005050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06655.1|1005152_1005815_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06656.1|1005917_1006328_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06657.1|1006432_1007434_+	amidase	NA	NA	NA	NA	NA
AZX06658.1|1007436_1008633_+	CoA transferase	NA	NA	NA	NA	NA
AZX06659.1|1008653_1009457_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX06660.1|1009537_1009834_+	histidine kinase	NA	NA	NA	NA	NA
AZX06661.1|1009864_1010428_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09287.1|1010468_1011326_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX06662.1|1011333_1012083_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX06663.1|1012104_1012977_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06664.1|1013005_1013785_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX06665.1|1013818_1014616_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06666.1|1016067_1017240_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX06667.1|1017270_1017663_+	RidA family protein	NA	NA	NA	NA	NA
AZX06668.1|1017656_1018517_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX06669.1|1018520_1019483_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09288.1|1020259_1020949_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX06670.1|1021809_1022760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06671.1|1023109_1023979_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06672.1|1024049_1024745_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX06673.1|1024734_1025244_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX06674.1|1025240_1026461_+	MFS transporter	NA	NA	NA	NA	NA
AZX06675.1|1026408_1027311_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06676.1|1028197_1029484_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06677.1|1029522_1030896_+	amidase	NA	NA	NA	NA	NA
AZX06678.1|1030934_1031636_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX06679.1|1031934_1032924_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX06680.1|1033024_1033486_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX06681.1|1033501_1034050_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX06682.1|1034191_1035667_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX06683.1|1035772_1036864_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX06684.1|1036867_1037650_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX06685.1|1037659_1038448_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX06686.1|1039573_1040008_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX06687.1|1040004_1041015_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX06688.1|1041058_1041985_-	VOC family protein	NA	NA	NA	NA	NA
AZX06689.1|1042271_1042640_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX09289.1|1043787_1046277_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX06690.1|1046325_1047018_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX06691.1|1047090_1048290_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX06692.1|1048307_1049213_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06693.1|1049328_1050258_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX09290.1|1050283_1051630_+	MFS transporter	NA	NA	NA	NA	NA
AZX09291.1|1051657_1052407_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX06694.1|1052420_1053203_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX06695.1|1053395_1054346_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06696.1|1054407_1055553_-	porin	NA	NA	NA	NA	NA
AZX06697.1|1056029_1056866_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX06698.1|1056935_1057901_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06699.1|1057897_1058848_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06700.1|1058834_1059029_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06701.1|1059233_1059776_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06702.1|1060811_1061762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	1066244	1098135	4103234	transposase	Bacillus_virus(50.0%)	29	NA	NA
AZX06706.1|1066244_1067195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06707.1|1067191_1069300_-	AsmA family protein	NA	NA	NA	NA	NA
AZX06708.1|1069444_1070104_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX09293.1|1070135_1070600_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX06709.1|1070875_1071061_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06710.1|1071112_1071865_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX06711.1|1071871_1073134_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06712.1|1073175_1074414_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06713.1|1075491_1076619_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX06714.1|1076629_1077457_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX06715.1|1077443_1078310_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX06716.1|1079676_1080081_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06717.1|1080172_1081123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09294.1|1081492_1082404_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX06718.1|1082418_1083129_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06719.1|1083125_1084370_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX06720.1|1084371_1084806_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX06721.1|1084834_1085140_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX06722.1|1085033_1085252_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06723.1|1085238_1086189_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06724.1|1086245_1087394_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX06725.1|1087474_1088425_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06726.1|1088956_1089754_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06727.1|1089801_1090455_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX06728.1|1090411_1091500_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX06729.1|1091664_1093890_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX06730.1|1096167_1097064_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX06731.1|1096952_1097198_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06732.1|1097184_1098135_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	1128521	1199491	4103234	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX06762.1|1128521_1129472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06763.1|1129528_1130641_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX06764.1|1133024_1133975_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06765.1|1134565_1135342_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX06766.1|1135459_1135723_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX06767.1|1135823_1136828_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX06768.1|1137028_1138630_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX06769.1|1138655_1139414_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX06770.1|1139505_1140162_-	adenylate kinase	NA	NA	NA	NA	NA
AZX06771.1|1140252_1141017_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX06772.1|1141026_1141215_-	hypothetical protein	NA	NA	NA	NA	NA
AZX06773.1|1141270_1142314_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX06774.1|1142310_1142724_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX06775.1|1142720_1143341_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX06776.1|1143621_1144572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06777.1|1144739_1146131_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX06778.1|1146203_1146782_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX06779.1|1146898_1148296_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX06780.1|1148411_1149617_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX06781.1|1149716_1150235_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX06782.1|1150329_1150575_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX06783.1|1150802_1151117_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX06784.1|1151206_1156396_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX06785.1|1156392_1158561_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX06786.1|1158580_1160932_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX06787.1|1160936_1162256_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX06788.1|1162274_1163948_+	MCE family protein	NA	NA	NA	NA	NA
AZX06789.1|1163952_1164621_+	lipoprotein	NA	NA	NA	NA	NA
AZX06790.1|1164777_1168599_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX06791.1|1168929_1169880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06792.1|1169901_1171047_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06793.1|1171195_1172125_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX06794.1|1172121_1173210_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX06795.1|1173206_1174010_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX06796.1|1174006_1174738_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX06797.1|1174795_1176085_-	MFS transporter	NA	NA	NA	NA	NA
AZX06798.1|1176181_1176784_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06799.1|1181336_1181675_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX06800.1|1182343_1182649_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06801.1|1184355_1185306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06802.1|1185302_1186634_-	MFS transporter	NA	NA	NA	NA	NA
AZX06803.1|1187873_1189895_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX06804.1|1189887_1190529_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX06805.1|1190525_1190933_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX06806.1|1190929_1191730_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX06807.1|1191804_1192509_+	oxidoreductase	NA	NA	NA	NA	NA
AZX06808.1|1192540_1193335_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX06809.1|1193331_1194282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06810.1|1194380_1195331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06811.1|1195429_1195864_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX06812.1|1195946_1198283_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX09295.1|1198474_1199491_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	1299710	1356920	4103234	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX06889.1|1299710_1300661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06890.1|1304407_1305019_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX06891.1|1305241_1306702_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX06892.1|1306798_1308391_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX06893.1|1308377_1308656_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06894.1|1308714_1309002_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX06895.1|1309003_1310344_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX06896.1|1310439_1311129_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06897.1|1311141_1312572_+	MFS transporter	NA	NA	NA	NA	NA
AZX06898.1|1314296_1315118_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06899.1|1315128_1316700_+	amidohydrolase	NA	NA	NA	NA	NA
AZX06900.1|1316728_1317706_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06901.1|1317732_1318536_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX06902.1|1318532_1319327_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX06903.1|1319334_1320570_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX06904.1|1320562_1320997_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX06905.1|1321746_1322697_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06906.1|1323318_1325046_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX06907.1|1325157_1326516_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX06908.1|1326808_1327759_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06909.1|1327799_1328870_+	FUSC family protein	NA	NA	NA	NA	NA
AZX09301.1|1328892_1329771_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX06910.1|1329942_1330914_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX06911.1|1331076_1331919_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX06912.1|1332080_1332761_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX06913.1|1332754_1333924_+	amine oxidase	NA	NA	NA	NA	NA
AZX06914.1|1333920_1334952_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX06915.1|1334995_1336237_+	MFS transporter	NA	NA	NA	NA	NA
AZX06916.1|1336271_1337804_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX06917.1|1337884_1338508_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX06918.1|1338538_1339150_+	LysE family translocator	NA	NA	NA	NA	NA
AZX06919.1|1339185_1339656_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX06920.1|1339830_1340079_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06921.1|1340086_1341091_+	peptidase M20	NA	NA	NA	NA	NA
AZX06922.1|1341127_1342642_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX06923.1|1342645_1343605_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX06924.1|1343633_1344437_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX06925.1|1344438_1346073_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX06926.1|1346156_1347218_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX06927.1|1347416_1347686_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06928.1|1347689_1348214_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX06929.1|1348629_1349580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06930.1|1349576_1350647_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX06931.1|1350719_1351358_+	DedA family protein	NA	NA	NA	NA	NA
AZX06932.1|1351652_1351880_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX06933.1|1352002_1352716_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX06934.1|1352960_1353911_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX06935.1|1354014_1354296_+	hypothetical protein	NA	NA	NA	NA	NA
AZX06936.1|1354410_1355859_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX06937.1|1355969_1356920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	1447141	1499289	4103234	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZX07018.1|1447141_1448092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07019.1|1448258_1448612_+	cytochrome C	NA	NA	NA	NA	NA
AZX07020.1|1448624_1448987_+	cytochrome	NA	NA	NA	NA	NA
AZX07021.1|1449028_1449454_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX07022.1|1449656_1450913_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX07023.1|1451111_1452092_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07024.1|1452241_1453483_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07025.1|1453581_1454532_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07026.1|1454540_1455236_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX07027.1|1458057_1458657_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX07028.1|1458667_1460833_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX07029.1|1460856_1462641_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX07030.1|1462640_1462730_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX07031.1|1463424_1463697_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX07032.1|1463696_1465763_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX07033.1|1465759_1466710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07034.1|1466808_1467759_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07035.1|1467874_1468207_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX07036.1|1468203_1468890_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX07037.1|1468876_1469836_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX09310.1|1469877_1472238_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX07038.1|1472237_1472870_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX07039.1|1472932_1474312_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX07040.1|1474358_1475714_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX07041.1|1475992_1476241_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07042.1|1476428_1476746_-	virulence factor	NA	NA	NA	NA	NA
AZX07043.1|1477018_1477534_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX07044.1|1477627_1477789_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07045.1|1477804_1478560_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX07046.1|1478898_1479105_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07047.1|1479112_1479772_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX07048.1|1480066_1482271_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX07049.1|1482381_1483605_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX07050.1|1483727_1484702_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX07051.1|1484769_1485963_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX07052.1|1485977_1486778_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX07053.1|1486774_1488631_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX07054.1|1488627_1489233_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX07055.1|1489251_1490637_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX07056.1|1491362_1492589_+	transporter	NA	NA	NA	NA	NA
AZX07057.1|1492677_1493460_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX07058.1|1493558_1494509_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07059.1|1494535_1495309_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX07060.1|1495320_1496562_+	MFS transporter	NA	NA	NA	NA	NA
AZX07061.1|1498338_1499289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	1543214	1602076	4103234	protease,transposase,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZX09311.1|1543214_1543703_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX07109.1|1543820_1544399_+|protease	protease	protease	NA	NA	NA	NA
AZX07110.1|1544471_1544873_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX07111.1|1544971_1545922_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07112.1|1545928_1547041_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX07113.1|1547727_1548930_+	MFS transporter	NA	NA	NA	NA	NA
AZX07114.1|1549133_1551794_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07115.1|1551806_1555211_+	nuclease	NA	NA	NA	NA	NA
AZX07116.1|1555878_1558104_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX07117.1|1558150_1558477_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX07118.1|1558527_1559136_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX07119.1|1559234_1560185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07120.1|1560254_1561019_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX07121.1|1561015_1561615_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09312.1|1561718_1562564_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX07122.1|1562629_1563256_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX07123.1|1563252_1564203_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07124.1|1564189_1564378_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07125.1|1564301_1565423_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX07126.1|1565403_1566405_-	aminopeptidase	NA	NA	NA	NA	NA
AZX07127.1|1566510_1568022_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX07128.1|1568018_1569323_-	peptidase	NA	NA	NA	NA	NA
AZX07129.1|1569434_1569995_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX07130.1|1570262_1570817_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX07131.1|1571272_1571488_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX09313.1|1571742_1574340_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX07132.1|1574336_1575524_+	cupin	NA	NA	NA	NA	NA
AZX07133.1|1576181_1576796_+	fimbrial protein	NA	NA	NA	NA	NA
AZX07134.1|1576884_1578012_-	lipoprotein	NA	NA	NA	NA	NA
AZX07135.1|1578023_1578929_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX07136.1|1579821_1580772_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07137.1|1580953_1581706_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX07138.1|1581774_1582434_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX07139.1|1582430_1583159_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX07140.1|1583171_1585451_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX07141.1|1585475_1585679_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX07142.1|1585720_1586368_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX07143.1|1586488_1587406_-	cytochrome C	NA	NA	NA	NA	NA
AZX07144.1|1587402_1588116_-	cytochrome C	NA	NA	NA	NA	NA
AZX07145.1|1588353_1589124_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX07146.1|1589128_1589728_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX07147.1|1589972_1591463_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX07148.1|1591521_1591806_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX07149.1|1591802_1591931_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07150.1|1591943_1592099_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07151.1|1592371_1593298_-	YicC family protein	NA	NA	NA	NA	NA
AZX07152.1|1593434_1594175_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX07153.1|1594341_1595718_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX07154.1|1595899_1596805_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX07155.1|1596839_1598579_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX07156.1|1598456_1600259_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX07157.1|1600376_1601027_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX07158.1|1601125_1602076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	1647248	1711083	4103234	transposase	Brazilian_cedratvirus(25.0%)	53	NA	NA
AZX07189.1|1647248_1648199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07190.1|1648257_1649031_+	oxidoreductase	NA	NA	NA	NA	NA
AZX07191.1|1649023_1650580_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX07192.1|1650576_1651527_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07193.1|1652853_1653456_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07194.1|1653695_1654397_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX07195.1|1654390_1655173_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX07196.1|1655357_1656308_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07197.1|1656406_1657144_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX07198.1|1657333_1658092_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX07199.1|1658138_1659128_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX07200.1|1659305_1660274_-	transporter	NA	NA	NA	NA	NA
AZX07201.1|1661813_1662782_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX07202.1|1662790_1663732_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX07203.1|1664205_1665216_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09317.1|1665206_1666721_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX07204.1|1666717_1668064_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09318.1|1668066_1669101_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX07205.1|1669150_1670776_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX07206.1|1671328_1672279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07207.1|1672383_1673331_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09319.1|1673384_1675199_-	histidine kinase	NA	NA	NA	NA	NA
AZX07208.1|1675191_1675866_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX07209.1|1675995_1679070_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX07210.1|1679083_1679383_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX09320.1|1679697_1680321_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX07211.1|1680564_1681434_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX07212.1|1681411_1682356_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09321.1|1682441_1683413_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09322.1|1683480_1684254_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX07213.1|1684250_1685447_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX07214.1|1685477_1686428_-	hydrolase	NA	NA	NA	NA	NA
AZX07215.1|1686649_1687339_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX07216.1|1687403_1688159_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX07217.1|1688210_1689203_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX07218.1|1689212_1690166_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07219.1|1690281_1691244_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX07220.1|1692645_1693074_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07221.1|1693070_1694021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09323.1|1694314_1695037_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX07222.1|1695475_1696663_-	MFS transporter	NA	NA	NA	NA	NA
AZX07223.1|1696666_1697047_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07224.1|1698766_1699738_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX07225.1|1699751_1700465_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX07226.1|1700469_1701387_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07227.1|1701493_1701790_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07228.1|1703994_1706928_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX07229.1|1706927_1707272_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX07230.1|1707268_1708897_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX07231.1|1708893_1709373_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX07232.1|1709369_1709654_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX07233.1|1709650_1709977_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZX07234.1|1710132_1711083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	2145853	2201089	4103234	protease,transposase	Lake_Baikal_phage(25.0%)	50	NA	NA
AZX07572.1|2145853_2146804_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07573.1|2147004_2147814_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX07574.1|2147938_2148889_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07575.1|2148885_2149779_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX07576.1|2149903_2150098_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX07577.1|2150097_2150439_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX07578.1|2150448_2152311_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX07579.1|2152440_2152953_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX07580.1|2152955_2153279_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX07581.1|2153280_2153691_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX07582.1|2153728_2154940_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX07583.1|2154957_2155470_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX07584.1|2155685_2156177_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX07585.1|2156429_2158466_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX07586.1|2158543_2159746_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX07587.1|2159796_2160525_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX07588.1|2162082_2163033_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07589.1|2163603_2163816_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07590.1|2163833_2164565_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07591.1|2164599_2165241_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX07592.1|2165233_2165950_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX07593.1|2168114_2168891_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX07594.1|2168912_2170070_-	thiolase	NA	NA	NA	NA	NA
AZX07595.1|2170066_2170498_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07596.1|2170494_2171298_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX07597.1|2171311_2171767_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX07598.1|2171779_2172751_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX07599.1|2172816_2174040_-	CoA transferase	NA	NA	NA	NA	NA
AZX07600.1|2174267_2175218_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07601.1|2175341_2177795_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX07602.1|2177983_2179288_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX07603.1|2179392_2180046_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX07604.1|2180048_2181359_-	trigger factor	NA	NA	NA	NA	NA
AZX07605.1|2181537_2182116_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX07606.1|2182227_2182428_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX07607.1|2182773_2183340_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX07608.1|2183423_2183627_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX07609.1|2183933_2184254_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07610.1|2184295_2184577_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07611.1|2184651_2185908_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX07612.1|2186290_2186620_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX07613.1|2188190_2189012_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX07614.1|2189011_2190151_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX07615.1|2190157_2191054_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX07616.1|2191050_2192976_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX07617.1|2193335_2195948_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX07618.1|2196000_2198301_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX07619.1|2198297_2199506_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX07620.1|2199767_2200142_+	hypothetical protein	NA	NA	NA	NA	NA
AZX07621.1|2200138_2201089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	2204196	2258466	4103234	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
AZX07623.1|2204196_2207058_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX07624.1|2207060_2207567_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX07625.1|2207671_2208880_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX07626.1|2208881_2209820_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07627.1|2209981_2210455_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX07628.1|2210451_2211402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07629.1|2211388_2211568_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07630.1|2211512_2211953_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX07631.1|2212081_2213311_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX07632.1|2213349_2214171_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX07633.1|2214224_2215376_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX07634.1|2215467_2215956_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX07635.1|2218482_2221056_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX07636.1|2221126_2223700_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX07637.1|2223965_2224166_+	CsbD family protein	NA	NA	NA	NA	NA
AZX07638.1|2224197_2224359_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX07639.1|2224416_2224755_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX07640.1|2224903_2225854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07641.1|2225952_2226903_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07642.1|2227001_2227721_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX09345.1|2227797_2228346_+	arylesterase	NA	NA	NA	NA	NA
AZX07643.1|2228327_2230343_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX07644.1|2230525_2231275_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX07645.1|2231287_2232151_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX07646.1|2232154_2233570_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX07647.1|2233703_2234432_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX07648.1|2234570_2234771_-	copper chaperone	NA	NA	NA	NA	NA
AZX07649.1|2234946_2235345_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX07650.1|2235368_2236769_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX09346.1|2236887_2237640_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07651.1|2237928_2238606_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07652.1|2238632_2239412_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX07653.1|2239408_2240293_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX09347.1|2240310_2241000_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX07654.1|2241074_2241833_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX07655.1|2241958_2242606_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX09348.1|2242873_2243890_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX07656.1|2243987_2245028_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX07657.1|2245162_2246455_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX07658.1|2247814_2248198_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX07659.1|2248215_2248803_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX07660.1|2248840_2249791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07661.1|2249889_2250450_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX07662.1|2250446_2250992_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07663.1|2251187_2252216_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07664.1|2252256_2253597_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX07665.1|2253705_2254710_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX07666.1|2254816_2257417_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX07667.1|2257515_2258466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	2505043	2563287	4103234	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZX07873.1|2505043_2505994_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07874.1|2506473_2507130_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX07875.1|2507144_2508812_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX07876.1|2508814_2509444_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX07877.1|2509655_2510750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX07878.1|2510894_2511707_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX07879.1|2511710_2513414_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX07880.1|2513464_2514595_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX07881.1|2514781_2515858_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX09359.1|2515939_2516590_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX07882.1|2516604_2518038_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX07883.1|2518291_2519110_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX07884.1|2519106_2519811_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX07885.1|2520710_2521826_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07886.1|2521859_2522234_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07887.1|2522256_2523414_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX07888.1|2523426_2523660_-	lipoprotein	NA	NA	NA	NA	NA
AZX07889.1|2524294_2527264_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX07890.1|2527278_2527488_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX07891.1|2527639_2528269_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07892.1|2528265_2530383_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX07893.1|2530379_2531060_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX07894.1|2531056_2531617_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX07895.1|2531623_2532721_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX07896.1|2532858_2533467_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX07897.1|2533463_2534756_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX07898.1|2534769_2535312_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX07899.1|2535321_2536158_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX07900.1|2536191_2537253_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX07901.1|2537294_2538347_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX07902.1|2538362_2538665_-	hypothetical protein	NA	NA	NA	NA	NA
AZX07903.1|2538806_2539757_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07904.1|2539935_2541630_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX07905.1|2541626_2542712_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX07906.1|2542759_2543659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX07907.1|2543669_2544314_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX07908.1|2545335_2548578_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX07909.1|2548588_2549686_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX07910.1|2549948_2550932_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX07911.1|2551030_2551981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07912.1|2552079_2553030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07913.1|2553039_2553729_-	VIT family protein	NA	NA	NA	NA	NA
AZX07914.1|2553788_2554226_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX07915.1|2554271_2555165_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX07916.1|2555212_2556385_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX07917.1|2556381_2557536_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX07918.1|2557732_2558083_-	RnfH family protein	NA	NA	NA	NA	NA
AZX07919.1|2558072_2558507_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX07920.1|2558523_2559474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07921.1|2559621_2560089_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX07922.1|2560069_2561227_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX07923.1|2561292_2562219_-	paraslipin	NA	NA	NA	NA	NA
AZX07924.1|2562336_2563287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	2605567	2672067	4103234	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX07963.1|2605567_2606518_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07964.1|2606887_2607460_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX07965.1|2607462_2608473_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX07966.1|2608465_2608966_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX07967.1|2608976_2609318_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX07968.1|2609329_2610121_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX07969.1|2610137_2610407_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX07970.1|2610429_2611218_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX09363.1|2611264_2612281_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX07971.1|2612497_2613940_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX07972.1|2614118_2615738_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX07973.1|2615858_2617679_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX07974.1|2617757_2619290_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX07975.1|2619323_2620970_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX07976.1|2621039_2622062_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX07977.1|2622079_2623213_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX07978.1|2623215_2623905_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX07979.1|2623904_2624690_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX07980.1|2624733_2625498_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX07981.1|2625536_2626958_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX07982.1|2627023_2627728_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX07983.1|2627775_2628195_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX07984.1|2628207_2628615_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX09364.1|2628798_2629509_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX07985.1|2629635_2629926_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX07986.1|2629943_2630426_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX07987.1|2634931_2636086_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX09365.1|2636391_2637408_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX07988.1|2637654_2638443_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX07989.1|2638509_2639190_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX07990.1|2639186_2639957_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX07991.1|2640055_2641006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX07992.1|2641061_2641979_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX07993.1|2641989_2643168_-	mandelate racemase	NA	NA	NA	NA	NA
AZX07994.1|2643187_2644183_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX07995.1|2645771_2646380_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX07996.1|2646367_2647408_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX07997.1|2647425_2648388_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX07998.1|2648384_2649578_-	CoA transferase	NA	NA	NA	NA	NA
AZX07999.1|2649574_2650372_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX08000.1|2650397_2651384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08001.1|2651402_2653442_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX09366.1|2653643_2654324_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08002.1|2654337_2655249_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX08003.1|2655245_2655824_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX08004.1|2655962_2656868_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08005.1|2656875_2660295_+	nuclease	NA	NA	NA	NA	NA
AZX08006.1|2660282_2662883_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX08007.1|2663838_2664471_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08008.1|2664864_2665623_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08009.1|2665619_2666822_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX08010.1|2667009_2667960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08011.1|2668867_2670013_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX09367.1|2670032_2670755_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX08012.1|2670871_2671051_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08013.1|2671116_2672067_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	2893864	2972891	4103234	holin,transposase,tRNA	Planktothrix_phage(18.18%)	60	NA	NA
AZX08187.1|2893864_2894815_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX08188.1|2894861_2895416_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX08189.1|2895483_2896329_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX08190.1|2896398_2897367_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX08191.1|2897366_2899163_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08192.1|2901062_2904989_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX08193.1|2905279_2905456_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08194.1|2905724_2908955_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX08195.1|2909236_2910064_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX08196.1|2910097_2910793_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX08197.1|2910785_2912066_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX08198.1|2912075_2913053_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09382.1|2913034_2914735_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX08199.1|2914837_2915941_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX08200.1|2915971_2916727_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX08201.1|2916733_2918254_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX08202.1|2918296_2918599_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08203.1|2918595_2919228_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08204.1|2919306_2921172_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX08205.1|2921168_2921984_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX08206.1|2921991_2923107_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX08207.1|2924011_2924890_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX08208.1|2924889_2925714_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX08209.1|2927013_2929893_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX08210.1|2929874_2930651_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX08211.1|2930743_2932207_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX08212.1|2932203_2932575_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX08213.1|2932592_2933906_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08214.1|2933942_2934401_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX08215.1|2934513_2935464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08216.1|2935460_2936474_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX08217.1|2936613_2937600_+	homoserine kinase	NA	NA	NA	NA	NA
AZX08218.1|2937643_2938444_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08219.1|2939246_2940197_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08220.1|2940348_2940951_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08221.1|2940969_2941602_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX08222.1|2941839_2943726_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX08223.1|2943744_2944587_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX08224.1|2944583_2945942_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX08225.1|2946162_2946957_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX08226.1|2947187_2948681_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX08227.1|2948916_2950998_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX08228.1|2951192_2952233_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX08229.1|2952367_2953384_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX08230.1|2953405_2954263_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX09383.1|2954307_2955084_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX08231.1|2955451_2956402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08232.1|2956428_2956893_-	barstar family protein 2	NA	NA	NA	NA	NA
AZX08233.1|2958099_2960388_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX08234.1|2960504_2961377_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08235.1|2961419_2962574_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX08236.1|2962608_2963439_-	transglycosylase	NA	NA	NA	NA	NA
AZX08237.1|2963522_2965067_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX08238.1|2965109_2965469_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08239.1|2965470_2965884_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX08240.1|2965924_2966242_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX08241.1|2966326_2967043_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09384.1|2967306_2968728_+	siroheme synthase	NA	NA	NA	NA	NA
AZX08242.1|2968794_2971542_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZX09385.1|2971874_2972891_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	2981512	3116671	4103234	transposase,tRNA	uncultured_Caudovirales_phage(10.0%)	118	NA	NA
AZX09387.1|2981512_2982529_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX08249.1|2983466_2984894_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX08250.1|2984890_2985913_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX08251.1|2985902_2986376_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX08252.1|2986501_2987404_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZX08253.1|2987400_2989044_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX09388.1|2989040_2990048_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX09389.1|2990878_2991895_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX08254.1|2991994_2992627_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX08255.1|2992635_2993025_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX08256.1|2993077_2994130_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX08257.1|2994993_2996700_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX08258.1|2996773_2997274_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX08259.1|2997288_2999346_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX08260.1|2999372_2999666_-	response regulator	NA	NA	NA	NA	NA
AZX08261.1|2999767_3000715_-	motility protein MotB	NA	NA	NA	NA	NA
AZX08262.1|3000727_3001603_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX08263.1|3001723_3002284_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX08264.1|3002318_3002642_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX08265.1|3003077_3003815_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX08266.1|3004113_3005064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08267.1|3005307_3005571_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX08268.1|3005644_3005926_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08269.1|3005942_3006803_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX08270.1|3006799_3007135_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08271.1|3007188_3007839_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX08272.1|3009519_3010464_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08273.1|3010509_3010827_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08274.1|3010829_3011768_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX08275.1|3011945_3012431_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX08276.1|3012449_3012998_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX08277.1|3013274_3014408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08278.1|3014445_3015153_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZX09390.1|3015307_3017656_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX08279.1|3017652_3018591_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX08280.1|3018616_3019807_+	acetate kinase	NA	NA	NA	NA	NA
AZX08281.1|3019803_3020577_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX08282.1|3020606_3021800_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX08283.1|3021917_3022928_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX08284.1|3022945_3024982_-	transketolase	NA	NA	NA	NA	NA
AZX08285.1|3025176_3025917_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX08286.1|3026015_3026966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08287.1|3027008_3028184_+	flagellin FliC	NA	NA	NA	NA	NA
AZX08288.1|3028405_3030196_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX08289.1|3030208_3031870_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX08290.1|3031882_3034588_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX08291.1|3034880_3036635_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX08292.1|3036631_3037258_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX08293.1|3037254_3038106_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX08294.1|3038181_3040296_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX08295.1|3040446_3041097_+	SCO family protein	NA	NA	NA	NA	NA
AZX08296.1|3041242_3041494_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX08297.1|3041563_3042946_-	multidrug transporter	NA	NA	NA	NA	NA
AZX08298.1|3042942_3046122_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX09391.1|3046929_3047847_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08299.1|3047898_3048630_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX08300.1|3048689_3049262_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX09392.1|3050770_3051787_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX08301.1|3051924_3052974_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX08302.1|3053078_3054029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08303.1|3054124_3054850_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX08304.1|3055060_3055441_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX08305.1|3055746_3056619_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX08306.1|3056626_3057007_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08307.1|3057160_3058435_-	radical SAM protein	NA	NA	NA	NA	NA
AZX09393.1|3059922_3060831_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX08308.1|3061628_3062693_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX08309.1|3064529_3065564_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX08310.1|3065753_3066395_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX08311.1|3066477_3068304_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX08312.1|3068547_3069477_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX08313.1|3069476_3070226_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX08314.1|3070297_3071212_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX08315.1|3071231_3072377_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX08316.1|3072437_3073349_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX08317.1|3073429_3074380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08318.1|3074478_3075063_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX08319.1|3075097_3076087_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX08320.1|3076083_3077025_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX08321.1|3077021_3078242_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX08322.1|3078284_3078599_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX08323.1|3078790_3079150_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX08324.1|3079151_3080882_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX08325.1|3081054_3081726_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX08326.1|3081740_3083069_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX08327.1|3083065_3083965_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX08328.1|3084051_3085137_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX08329.1|3085129_3086263_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX08330.1|3086262_3088944_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX08331.1|3089314_3089896_+	OmpA family protein	NA	NA	NA	NA	NA
AZX08332.1|3089973_3090747_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX08333.1|3090743_3091421_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX08334.1|3091636_3092818_+	MFS transporter	NA	NA	NA	NA	NA
AZX08335.1|3093294_3093552_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08336.1|3093590_3093773_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX08337.1|3093802_3094753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09394.1|3094882_3095275_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX08338.1|3095551_3096463_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX08339.1|3096587_3097562_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08340.1|3097558_3098509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08341.1|3098607_3099693_-	DNA polymerase IV	NA	NA	NA	NA	NA
AZX08342.1|3099790_3100201_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX08343.1|3100816_3102730_+	S9 family peptidase	NA	NA	NA	NA	NA
AZX08344.1|3102865_3105478_+	penicillin-binding protein	NA	NA	NA	NA	NA
AZX08345.1|3105479_3106214_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX08346.1|3106377_3107559_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX08347.1|3107555_3107768_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08348.1|3107764_3108745_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX09395.1|3108790_3109618_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX08349.1|3109764_3111582_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX08350.1|3111636_3112020_+	ferredoxin	NA	NA	NA	NA	NA
AZX08351.1|3112016_3112967_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08352.1|3113079_3113331_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08353.1|3113524_3113740_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08354.1|3113836_3114955_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX08355.1|3115074_3115287_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08356.1|3115446_3115668_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08357.1|3115720_3116671_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	3137418	3191549	4103234	holin,transposase	Ostreococcus_lucimarinus_virus(25.0%)	42	NA	NA
AZX08374.1|3137418_3138369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08375.1|3139532_3141248_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX08376.1|3141258_3141750_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX08377.1|3141822_3142839_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX08378.1|3143006_3143786_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX08379.1|3143804_3144332_-	lipoprotein	NA	NA	NA	NA	NA
AZX08380.1|3144330_3144537_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08381.1|3144625_3144895_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX08382.1|3144985_3147145_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX08383.1|3147265_3147985_+	lipoprotein	NA	NA	NA	NA	NA
AZX08384.1|3147981_3148932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08385.1|3149072_3150290_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX08386.1|3150283_3150895_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX08387.1|3151528_3152506_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX08388.1|3152649_3153396_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX08389.1|3153417_3153864_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX08390.1|3154651_3156883_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX08391.1|3156905_3157706_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08392.1|3157987_3159220_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX08393.1|3159330_3160320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08394.1|3160350_3161739_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX08395.1|3163337_3164321_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09396.1|3164517_3165534_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX08396.1|3165730_3166555_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX08397.1|3166632_3167556_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX08398.1|3167636_3168878_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX08399.1|3168911_3169913_+	peptidase M14	NA	NA	NA	NA	NA
AZX08400.1|3170041_3171013_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08401.1|3171037_3173122_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX09397.1|3173188_3174181_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08402.1|3174289_3175624_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX08403.1|3175649_3177662_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX09398.1|3177658_3179707_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX08404.1|3179810_3180458_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX08405.1|3180598_3181093_+	azurin	NA	NA	NA	NA	NA
AZX08406.1|3181136_3181808_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX08407.1|3181822_3183316_-	RND transporter	NA	NA	NA	NA	NA
AZX08408.1|3183312_3186426_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX08409.1|3186438_3187545_-	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX08410.1|3187668_3188337_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX08411.1|3188557_3189508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08412.1|3189590_3191549_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 24
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	3314439	3414552	4103234	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX08513.1|3314439_3315390_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08514.1|3316121_3316499_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX08515.1|3316483_3317185_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08516.1|3317328_3318021_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX08517.1|3318020_3319124_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX08518.1|3319233_3321606_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX08519.1|3321602_3323162_+	chaperone SurA	NA	NA	NA	NA	NA
AZX08520.1|3323186_3323984_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX08521.1|3324015_3325161_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX08522.1|3325265_3326708_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX09403.1|3326710_3327799_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08523.1|3330077_3331028_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08524.1|3331014_3331233_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08525.1|3332157_3332715_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08526.1|3332690_3333041_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08527.1|3333209_3334004_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX08528.1|3334000_3335050_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX08529.1|3335049_3335739_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX08530.1|3335825_3336323_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX08531.1|3336354_3337671_-	protein TolB	NA	NA	NA	NA	NA
AZX08532.1|3337687_3338662_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX08533.1|3338698_3339157_-	protein TolR	NA	NA	NA	NA	NA
AZX08534.1|3339156_3339837_-	protein TolQ	NA	NA	NA	NA	NA
AZX08535.1|3339839_3340268_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX08536.1|3340320_3342051_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX08537.1|3342116_3342689_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX08538.1|3342669_3343356_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX08539.1|3343711_3344383_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX08540.1|3344389_3344590_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08541.1|3344932_3345214_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08542.1|3345210_3345744_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX08543.1|3345725_3346277_-	lysozyme	NA	NA	NA	NA	NA
AZX08544.1|3346255_3346498_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08545.1|3346502_3347315_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08546.1|3347314_3347578_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08547.1|3347796_3348213_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08548.1|3348217_3352174_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX08549.1|3352166_3352556_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX08550.1|3352552_3353086_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX08551.1|3353153_3353513_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08552.1|3353522_3356135_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX08553.1|3356160_3356451_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX08554.1|3356468_3356798_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX08555.1|3356807_3357326_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX08556.1|3357580_3358081_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX08557.1|3358088_3358511_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08558.1|3358507_3358906_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX08559.1|3358902_3359298_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX08560.1|3359297_3359498_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08561.1|3359499_3359982_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX08562.1|3360044_3360296_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08563.1|3360305_3360953_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX08564.1|3360970_3361921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08565.1|3362349_3362952_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX08566.1|3363074_3363317_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX09404.1|3363322_3364378_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX08567.1|3364406_3365825_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX08568.1|3365827_3367105_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX08569.1|3367091_3367541_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX08570.1|3368216_3369167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08571.1|3369184_3369406_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08572.1|3369420_3370119_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08573.1|3370111_3370432_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09405.1|3370911_3371523_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX08574.1|3371588_3371801_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08575.1|3372052_3373003_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08576.1|3373101_3374175_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08577.1|3374342_3375137_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX08578.1|3375176_3375701_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX08579.1|3375693_3377436_-	sulfite reductase	NA	NA	NA	NA	NA
AZX08580.1|3377645_3378404_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX08581.1|3378406_3379114_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX08582.1|3379130_3380012_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX08583.1|3380022_3380781_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09406.1|3380749_3381505_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08584.1|3381574_3382993_+	amidase	NA	NA	NA	NA	NA
AZX08585.1|3383014_3383665_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX08586.1|3383798_3384134_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX08587.1|3384222_3385173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08588.1|3385249_3387070_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX08589.1|3387074_3388148_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX08590.1|3388270_3389239_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX08591.1|3389312_3390224_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX08592.1|3390242_3390815_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX08593.1|3390895_3391444_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX08594.1|3391443_3393033_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX08595.1|3393102_3393342_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX08596.1|3393382_3394414_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX08597.1|3394473_3395655_-	monooxygenase	NA	NA	NA	NA	NA
AZX08598.1|3395751_3396204_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08599.1|3396213_3397554_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX08600.1|3397870_3398908_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08601.1|3399289_3399649_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09407.1|3399732_3400674_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08602.1|3400748_3401699_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08603.1|3401992_3403087_+	porin	NA	NA	NA	NA	NA
AZX08604.1|3403168_3404050_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX08605.1|3404071_3404911_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX08606.1|3404986_3406504_+	peptidase	NA	NA	NA	NA	NA
AZX08607.1|3406600_3407701_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX08608.1|3407717_3408140_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX08609.1|3408162_3408375_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX08610.1|3408421_3409342_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX09408.1|3409605_3410274_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX08611.1|3410276_3410606_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX08612.1|3410812_3412246_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX08613.1|3412257_3412641_-	thioredoxin	NA	NA	NA	NA	NA
AZX08614.1|3412702_3413503_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08615.1|3413601_3414552_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	3575219	3622068	4103234	transposase	Lake_Baikal_phage(25.0%)	39	NA	NA
AZX08755.1|3575219_3576170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08756.1|3576286_3577354_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AZX08757.1|3577429_3580558_-	ribonuclease E/G	NA	NA	NA	NA	NA
AZX08758.1|3581065_3582031_+	23S rRNA pseudouridine(955/2504/2580) synthase	NA	NA	NA	NA	NA
AZX08759.1|3582033_3582705_+	hydrolase	NA	NA	NA	NA	NA
AZX08760.1|3582861_3583821_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AZX08761.1|3583828_3584491_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AZX08762.1|3584487_3585438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08763.1|3585536_3586487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08764.1|3586608_3587862_+	CoA transferase	NA	NA	NA	NA	NA
AZX08765.1|3587839_3588802_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09414.1|3588954_3589428_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX08766.1|3589427_3590660_+	2-methylfumaryl-CoA isomerase	NA	NA	NA	NA	NA
AZX08767.1|3591405_3591687_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08768.1|3591673_3592660_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08769.1|3592803_3593208_+	RidA family protein	NA	NA	NA	NA	NA
AZX08770.1|3593349_3596736_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AZX08771.1|3596766_3598230_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AZX08772.1|3598226_3599867_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AZX08773.1|3599976_3600612_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08774.1|3600641_3601082_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08775.1|3601592_3601796_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AZX08776.1|3601971_3602877_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08777.1|3602975_3603926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08778.1|3604024_3604975_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08779.1|3606756_3607950_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX08780.1|3608015_3609044_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX08781.1|3609070_3610243_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX08782.1|3610368_3611346_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08783.1|3611356_3612328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08784.1|3612394_3613180_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX08785.1|3613172_3614405_-	CoA transferase	NA	NA	NA	NA	NA
AZX08786.1|3614600_3615356_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX08787.1|3615466_3615985_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX09415.1|3617773_3619174_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX08788.1|3619273_3619618_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX08789.1|3619706_3620177_+	universal stress protein	NA	NA	NA	NA	NA
AZX08790.1|3620587_3620986_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX08791.1|3621117_3622068_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	3702215	3836190	4103234	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	118	3747908:3747925	3792547:3792564
AZX08864.1|3702215_3703166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08865.1|3703265_3704216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08866.1|3704212_3704848_-	transporter	NA	NA	NA	NA	NA
AZX08867.1|3704977_3705877_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZX08868.1|3705972_3706464_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZX08869.1|3706510_3707476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08870.1|3708609_3709851_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZX08871.1|3709964_3710981_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZX08872.1|3711015_3711492_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08873.1|3711634_3712543_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZX08874.1|3712656_3713769_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZX08875.1|3713869_3714403_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX08876.1|3714491_3715742_+	kynureninase	NA	NA	NA	NA	NA
AZX08877.1|3715843_3716356_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZX08878.1|3716261_3716468_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08879.1|3716454_3717405_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08880.1|3717470_3718409_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZX08881.1|3718431_3719058_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZX08882.1|3719054_3719711_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZX08883.1|3719707_3720310_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08884.1|3720316_3720943_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZX08885.1|3721084_3721654_+	bacterioferritin	NA	NA	NA	NA	NA
AZX08886.1|3721724_3723044_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZX08887.1|3723150_3723342_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX08888.1|3723593_3724883_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX08889.1|3725037_3726033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08890.1|3726117_3726792_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08891.1|3726788_3727739_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08892.1|3727725_3727908_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08893.1|3727900_3729142_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZX08894.1|3729138_3730083_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZX08895.1|3730201_3731152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08896.1|3731111_3732041_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08897.1|3732094_3732430_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZX08898.1|3732474_3733239_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX08899.1|3733262_3734003_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08900.1|3734010_3735585_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZX08901.1|3735598_3736576_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08902.1|3736848_3737448_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZX08903.1|3737481_3744384_-	autotransporter BatB	NA	NA	NA	NA	NA
AZX08904.1|3744830_3744962_-	entericidin	NA	NA	NA	NA	NA
AZX08905.1|3744993_3745155_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08906.1|3745227_3745434_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZX08907.1|3746438_3747098_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZX08908.1|3747125_3748271_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3747908:3747925	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZX08909.1|3748411_3748747_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZX08910.1|3748821_3749682_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZX08911.1|3749945_3750647_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX08912.1|3750816_3751212_+	RidA family protein	NA	NA	NA	NA	NA
AZX08913.1|3751321_3752272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08914.1|3752282_3752924_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08915.1|3753090_3753333_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08916.1|3754416_3754884_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZX08917.1|3755117_3755495_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08918.1|3755491_3755674_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08919.1|3755677_3756664_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZX08920.1|3756660_3757308_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZX08921.1|3757365_3757893_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08922.1|3757926_3759114_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZX08923.1|3759103_3759466_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZX08924.1|3759458_3759578_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08925.1|3759578_3759779_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX08926.1|3759775_3760765_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZX08927.1|3762251_3764222_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZX08928.1|3764463_3764862_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08929.1|3764870_3765794_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08930.1|3766251_3767202_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08931.1|3767432_3769124_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZX08932.1|3769172_3769445_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZX08933.1|3769441_3769813_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZX08934.1|3769908_3770043_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZX08935.1|3770448_3771858_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZX08936.1|3771854_3772970_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZX08937.1|3773064_3775518_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZX08938.1|3775636_3776428_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08939.1|3776547_3777975_+	amidase	NA	NA	NA	NA	NA
AZX09419.1|3778013_3778985_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08940.1|3779403_3780567_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX08941.1|3780654_3781500_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX08942.1|3783056_3784007_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08943.1|3784561_3784936_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX08944.1|3785010_3786069_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX08945.1|3786092_3787043_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08946.1|3789924_3791094_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX09420.1|3791194_3792802_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3792547:3792564	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZX08947.1|3792848_3794870_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZX08948.1|3794898_3795144_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZX08949.1|3795157_3796348_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZX08950.1|3796543_3797509_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX08951.1|3797531_3798671_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX08952.1|3798882_3799845_+	immunogenic protein	NA	NA	NA	NA	NA
AZX08953.1|3799968_3801993_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZX08954.1|3802189_3804433_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX08955.1|3804711_3805170_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08956.1|3806097_3808719_-	hypothetical protein	NA	NA	NA	NA	NA
AZX08957.1|3808782_3811410_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZX08958.1|3811561_3812626_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX08959.1|3812622_3813396_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZX08960.1|3813404_3814238_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX08961.1|3814250_3815030_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZX09421.1|3815064_3816537_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX08962.1|3816564_3817323_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX08963.1|3817378_3819229_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZX08964.1|3819322_3819799_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX08965.1|3819815_3820736_-	bestrophin	NA	NA	NA	NA	NA
AZX08966.1|3820842_3821343_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZX08967.1|3821716_3822409_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZX08968.1|3822717_3823668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX08969.1|3823664_3827438_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZX08970.1|3827774_3829664_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZX08971.1|3829675_3830569_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZX08972.1|3830594_3831470_+	thiazole synthase	NA	NA	NA	NA	NA
AZX08973.1|3831466_3832318_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZX08974.1|3832379_3833060_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZX08975.1|3833063_3833423_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08976.1|3833423_3834383_+	hypothetical protein	NA	NA	NA	NA	NA
AZX08977.1|3834403_3834892_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZX09422.1|3835173_3836190_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025354	Bordetella pertussis strain E140 chromosome, complete genome	4103234	4002302	4067214	4103234	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX09141.1|4002302_4002788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09142.1|4003006_4003987_+	protein BugT	NA	NA	NA	NA	NA
AZX09143.1|4004253_4005063_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX09144.1|4005102_4005783_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX09145.1|4005776_4006235_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX09146.1|4006246_4006609_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX09147.1|4006691_4007375_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX09148.1|4007430_4007739_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX09149.1|4007757_4008072_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX09150.1|4008068_4010543_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX09151.1|4010550_4011942_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX09152.1|4011938_4012124_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX09153.1|4012102_4012804_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX09154.1|4012800_4013622_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX09431.1|4013602_4014727_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX09155.1|4014719_4015739_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX09156.1|4015944_4016979_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX09432.1|4017079_4017871_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX09157.1|4017953_4018328_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX09158.1|4018305_4019715_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX09159.1|4019707_4021090_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX09160.1|4021424_4023029_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09161.1|4023064_4024078_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX09162.1|4024088_4025015_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX09163.1|4025405_4026356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09164.1|4026525_4027752_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX09165.1|4027951_4028818_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX09166.1|4028810_4029773_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX09167.1|4029873_4030824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09168.1|4030922_4031873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09169.1|4031971_4032922_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09170.1|4032918_4034412_-	RND transporter	NA	NA	NA	NA	NA
AZX09171.1|4034408_4037516_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX09172.1|4037512_4040581_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX09173.1|4040577_4041828_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX09174.1|4042008_4042770_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX09175.1|4042802_4043453_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX09176.1|4043455_4044295_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX09177.1|4044535_4045279_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09178.1|4045361_4045709_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09179.1|4045806_4046649_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX09180.1|4046693_4047581_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX09181.1|4047607_4047796_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX09182.1|4047893_4049351_+	MFS transporter	NA	NA	NA	NA	NA
AZX09183.1|4049337_4050864_+	glycerol kinase	NA	NA	NA	NA	NA
AZX09184.1|4050882_4051350_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09185.1|4051349_4052372_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09186.1|4052492_4053233_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX09187.1|4053287_4054388_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09188.1|4054389_4055580_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09189.1|4055699_4056716_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX09190.1|4057034_4057706_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX09191.1|4057702_4058611_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX09192.1|4058822_4059470_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX09193.1|4063321_4064398_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX09194.1|4064408_4065218_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX09195.1|4065307_4066081_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX09196.1|4066263_4067214_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
