The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	0	123122	4110543	transposase,tRNA,protease	Planktothrix_phage(16.67%)	111	NA	NA
AZW59163.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZW59164.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZW59165.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZW59166.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW59167.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZW59168.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZW59169.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZW59170.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZW59171.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZW59172.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZW59173.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZW59174.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZW59175.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZW59176.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZW62563.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZW59177.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59178.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZW59179.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW59180.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59181.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZW59182.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59183.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZW59184.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZW62564.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59185.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW59186.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW59187.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59188.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZW59189.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZW59190.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW59191.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZW59192.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW59193.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZW59194.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZW59195.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZW59196.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZW59197.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59198.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59199.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW59200.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59201.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZW59202.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZW59203.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59204.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZW59205.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZW59206.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZW59207.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW59208.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW59209.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW59210.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59211.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW59212.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW59213.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59214.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59215.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZW59216.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZW59217.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZW59218.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW59219.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59220.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59221.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZW59222.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZW59223.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW59224.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZW59225.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62565.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59226.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZW59227.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62566.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59228.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZW59229.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZW59230.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW59231.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZW59232.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZW59233.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZW59234.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZW59235.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZW59236.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW59237.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZW59238.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZW59239.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZW59240.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59241.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZW59242.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZW59243.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW59244.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZW59245.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59246.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW59247.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZW59248.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZW59249.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZW59250.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZW59251.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZW59252.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZW59253.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZW59254.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZW59255.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59256.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW59257.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZW59258.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW59259.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW62567.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZW59260.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59261.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW59262.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW59263.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW59264.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW59265.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZW59266.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZW59267.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59268.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	165941	302544	4110543	transposase,tRNA,protease	Klosneuvirus(10.53%)	117	NA	NA
AZW59300.1|165941_166892_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59301.1|168335_169238_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59302.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
AZW59303.1|170127_171594_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	6.0e-44
AZW59304.1|171590_172220_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZW59305.1|172268_173876_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZW59306.1|173900_174584_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62572.1|174665_175142_-	bacterioferritin	NA	NA	NA	NA	NA
AZW59307.1|175348_176299_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59308.1|177414_177942_+	lipoprotein	NA	NA	NA	NA	NA
AZW59309.1|178033_178849_+	lipoprotein	NA	NA	NA	NA	NA
AZW59310.1|178909_179644_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW59311.1|179681_181760_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZW59312.1|182009_182282_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59313.1|182380_183469_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZW59314.1|183472_185377_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZW59315.1|185373_189048_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZW59316.1|189108_189672_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZW59317.1|189679_190102_-	glyoxalase	NA	NA	NA	NA	NA
AZW59318.1|190129_190549_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZW62573.1|190577_191024_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZW59319.1|191150_191648_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59320.1|191802_194073_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZW59321.1|194116_195349_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW59322.1|196442_197135_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZW59323.1|197131_198025_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW59324.1|198419_199520_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZW59325.1|199601_199976_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZW59326.1|200035_202900_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZW59327.1|203044_203785_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59328.1|203854_205066_+	CoA transferase	NA	NA	NA	NA	NA
AZW59329.1|205094_206063_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59330.1|206676_207627_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59331.1|207783_208107_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZW59332.1|208211_209261_-	cyclase	NA	NA	NA	NA	NA
AZW59333.1|209257_210082_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZW59334.1|210082_210379_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59335.1|210404_210680_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZW59336.1|210736_211381_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW59337.1|211380_212067_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW62574.1|212196_213048_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59338.1|213098_213824_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW59339.1|213855_215205_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZW59340.1|215316_216249_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW59341.1|216706_219502_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZW59342.1|220095_223038_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZW59343.1|223109_223829_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZW59344.1|223867_224416_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZW59345.1|224570_225470_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZW59346.1|225494_226445_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59347.1|226431_226611_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59348.1|226663_227359_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59349.1|227375_228788_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW59350.1|228900_230331_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZW59351.1|230372_232286_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZW59352.1|232604_233171_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZW59353.1|233261_234263_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZW59354.1|234377_235328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59355.1|235414_236365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59356.1|236361_237312_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59357.1|237410_238208_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW59358.1|239157_239568_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZW59359.1|240589_241333_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59360.1|241376_242420_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW59361.1|242590_244693_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59362.1|246103_247060_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59363.1|247078_247570_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZW59364.1|247566_248922_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZW59365.1|248922_249621_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZW59366.1|249617_250319_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZW59367.1|250571_251621_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZW59368.1|251726_252668_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZW59369.1|252664_254554_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZW59370.1|254640_255279_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62575.1|255421_256666_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZW59371.1|256737_257274_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZW59372.1|257425_258817_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZW59373.1|258833_259814_-	AEC family transporter	NA	NA	NA	NA	NA
AZW59374.1|259949_260933_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZW59375.1|260997_261897_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59376.1|262003_263758_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW59377.1|263765_264890_-	CoA transferase	NA	NA	NA	NA	NA
AZW59378.1|264903_265884_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59379.1|266614_267565_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59380.1|268124_268670_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59381.1|268753_270373_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW59382.1|270388_271543_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZW59383.1|271556_271682_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZW59384.1|271678_273430_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZW59385.1|273426_275106_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZW59386.1|275141_275717_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZW59387.1|276859_277138_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW59388.1|278181_279132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59389.1|279118_279334_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59390.1|279409_279571_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZW59391.1|279578_279719_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59392.1|280237_280687_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZW59393.1|280696_281308_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW59394.1|281466_282321_-	cytochrome c1	NA	NA	NA	NA	NA
AZW59395.1|282340_283723_-	cytochrome b	NA	NA	NA	NA	NA
AZW59396.1|283787_284429_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZW59397.1|284568_285027_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZW59398.1|285051_285828_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZW62576.1|285881_287018_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZW59399.1|287014_287965_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59400.1|288063_288690_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW59401.1|288712_289639_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZW59402.1|289647_291234_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW59403.1|291230_292235_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZW59404.1|292434_293295_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW59405.1|293326_294328_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59406.1|294398_295208_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW59407.1|295285_297145_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZW59408.1|297273_298476_-	MFS transporter	NA	NA	NA	NA	NA
AZW59409.1|298589_299471_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59410.1|300973_301534_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZW59411.1|301593_302544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	391898	449407	4110543	transposase	Orpheovirus(14.29%)	50	NA	NA
AZW59498.1|391898_392849_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59499.1|392985_393903_+	reductase	NA	NA	NA	NA	NA
AZW59500.1|393899_394148_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZW59501.1|394144_395350_+	CoA transferase	NA	NA	NA	NA	NA
AZW59502.1|395422_396418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59503.1|396440_397661_-	CoA transferase	NA	NA	NA	NA	NA
AZW59504.1|397657_398302_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59505.1|400032_400842_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62582.1|401059_402100_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZW59506.1|402198_403182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59507.1|403108_403810_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59508.1|403858_404629_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW59509.1|404625_405867_-	CoA transferase	NA	NA	NA	NA	NA
AZW59510.1|405971_407678_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW59511.1|407674_408571_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59512.1|408611_410201_-	sulfurtransferase	NA	NA	NA	NA	NA
AZW59513.1|410250_411243_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59514.1|411311_411911_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62583.1|412371_413349_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59515.1|413427_414378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59516.1|414466_415381_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW59517.1|415377_416037_+	LysE family translocator	NA	NA	NA	NA	NA
AZW59518.1|416126_417050_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZW59519.1|417055_417511_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59520.1|417507_418611_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZW62584.1|418530_418839_+	GtrA family protein	NA	NA	NA	NA	NA
AZW59521.1|418798_420418_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZW59522.1|420414_421473_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZW59523.1|421602_422097_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW59524.1|422189_423167_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59525.1|423362_424568_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZW59526.1|424564_426076_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW62585.1|426091_427405_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZW59527.1|427595_427775_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59528.1|428184_428919_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZW59529.1|431363_432314_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59530.1|432445_432844_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZW59531.1|433254_433725_-	universal stress protein	NA	NA	NA	NA	NA
AZW59532.1|433813_434158_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZW59533.1|434257_435658_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW59534.1|437446_437965_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZW59535.1|438075_438831_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZW59536.1|439026_440259_+	CoA transferase	NA	NA	NA	NA	NA
AZW59537.1|440251_441037_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW59538.1|441103_442075_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59539.1|442085_443063_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59540.1|443188_444361_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW59541.1|444387_445416_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW59542.1|445481_446675_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW59543.1|448456_449407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	622892	670260	4110543	transposase,tRNA	Bacillus_phage(40.0%)	45	NA	NA
AZW59696.1|622892_623843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59697.1|624541_624925_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59698.1|624982_625585_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZW62591.1|625602_626004_-	DoxX family protein	NA	NA	NA	NA	NA
AZW59699.1|626137_627031_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59700.1|627027_627609_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZW59701.1|628403_629138_+	arginyltransferase	NA	NA	NA	NA	NA
AZW59702.1|629178_630228_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZW59703.1|630375_630954_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZW59704.1|631340_632318_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZW59705.1|632411_636806_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZW59706.1|637006_637855_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59707.1|638013_638826_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZW59708.1|638881_639832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59709.1|639930_640731_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59710.1|640792_641176_+	thioredoxin	NA	NA	NA	NA	NA
AZW59711.1|641187_642621_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZW59712.1|642827_643157_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62592.1|643159_643828_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW59713.1|644091_645012_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZW59714.1|645058_645271_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZW59715.1|645293_645716_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZW59716.1|645732_646833_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW59717.1|646929_648447_-	peptidase	NA	NA	NA	NA	NA
AZW59718.1|648522_649362_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZW59719.1|649383_650265_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZW59720.1|650346_651441_-	porin	NA	NA	NA	NA	NA
AZW59721.1|651734_652685_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62593.1|652759_653701_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59722.1|653784_654144_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59723.1|654525_655563_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59724.1|655879_657220_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZW59725.1|657229_657682_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59726.1|657778_658960_+	monooxygenase	NA	NA	NA	NA	NA
AZW59727.1|659019_660051_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZW59728.1|660091_660331_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW59729.1|660400_661990_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZW59730.1|661989_662538_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZW59731.1|662618_663191_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZW59732.1|663209_664121_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZW59733.1|664194_665163_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZW59734.1|665285_666359_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZW59735.1|666363_668184_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZW59736.1|668260_669211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59737.1|669309_670260_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	681479	714162	4110543	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(19.05%)	42	NA	NA
AZW59749.1|681479_682430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59750.1|682681_682894_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62595.1|682959_683571_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZW59751.1|684050_684371_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59752.1|684363_685062_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59753.1|685076_685298_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59754.1|685315_686266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62596.1|686941_687391_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZW59755.1|687377_688655_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZW59756.1|688657_690076_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZW62597.1|690104_691160_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZW59757.1|691165_691408_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZW59758.1|691530_692133_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZW59759.1|692561_693512_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59760.1|693529_694177_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZW59761.1|694186_694438_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59762.1|694500_694983_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZW59763.1|694984_695185_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59764.1|695184_695580_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZW59765.1|695576_695975_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZW59766.1|695971_696394_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59767.1|696401_696902_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZW59768.1|697156_697675_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZW59769.1|697684_698014_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZW59770.1|698031_698322_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZW59771.1|698347_700960_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZW59772.1|700969_701329_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59773.1|701396_701930_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZW59774.1|701926_702316_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZW59775.1|702308_706265_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZW59776.1|706269_706686_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59777.1|706904_707168_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZW59778.1|707167_707980_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59779.1|707984_708227_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59780.1|708205_708757_+	lysozyme	NA	NA	NA	NA	NA
AZW59781.1|708738_709272_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZW59782.1|709268_709550_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59783.1|709892_710093_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59784.1|710099_710771_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZW59785.1|711126_711813_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW59786.1|711793_712366_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW59787.1|712431_714162_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 6
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	858287	907551	4110543	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZW59903.1|858287_859238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62602.1|859210_859810_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59904.1|859811_860246_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW59905.1|860242_860677_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59906.1|860660_861464_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZW59907.1|861480_862296_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZW59908.1|862292_863108_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZW59909.1|863254_863956_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59910.1|863983_865942_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZW59911.1|866024_866975_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59912.1|867195_867864_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW59913.1|867987_869094_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW59914.1|869106_872220_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZW59915.1|872216_873710_+	RND transporter	NA	NA	NA	NA	NA
AZW59916.1|873724_874396_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW59917.1|874439_874934_-	azurin	NA	NA	NA	NA	NA
AZW59918.1|875074_875722_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW62603.1|875825_877874_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW59919.1|877870_879883_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW59920.1|879908_881243_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW59921.1|881351_882344_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59922.1|882410_884495_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZW59923.1|884519_885491_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59924.1|885619_886621_-	peptidase M14	NA	NA	NA	NA	NA
AZW59925.1|886654_887896_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW59926.1|887976_888900_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZW59927.1|888977_889802_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW59928.1|889998_891015_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW59929.1|891211_892195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59930.1|893793_895182_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW59931.1|895212_896202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59932.1|896312_897545_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW59933.1|897826_898627_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW59934.1|898649_900881_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZW59935.1|901668_902115_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZW59936.1|902136_902883_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZW59937.1|903026_904004_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZW59938.1|904637_905249_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZW59939.1|905242_906460_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZW59940.1|906600_907551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	938861	1004739	4110543	transposase	Bacillus_virus(15.38%)	60	NA	NA
AZW59966.1|938861_939812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59967.1|939864_940086_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59968.1|940245_940458_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59969.1|940577_941696_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW59970.1|941792_942008_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59971.1|942201_942453_+	hypothetical protein	NA	NA	NA	NA	NA
AZW59972.1|943489_943873_-	ferredoxin	NA	NA	NA	NA	NA
AZW59973.1|943927_945745_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZW62605.1|945891_946719_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZW59974.1|946764_947745_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW59975.1|947741_947954_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59976.1|947950_949132_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZW59977.1|949295_950030_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZW59978.1|950031_952644_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZW59979.1|952779_954693_-	S9 family peptidase	NA	NA	NA	NA	NA
AZW59980.1|955308_955719_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW59981.1|955816_956902_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZW59982.1|957000_957951_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59983.1|957947_958922_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW59984.1|959046_959958_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZW62606.1|960234_960627_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZW59985.1|960756_961707_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW59986.1|961736_961919_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZW59987.1|961957_962215_-	hypothetical protein	NA	NA	NA	NA	NA
AZW59988.1|962691_963873_-	MFS transporter	NA	NA	NA	NA	NA
AZW59989.1|964088_964766_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW59990.1|964762_965536_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZW59991.1|965613_966195_-	OmpA family protein	NA	NA	NA	NA	NA
AZW59992.1|966565_969247_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZW59993.1|969246_970380_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZW59994.1|970372_971458_+	chorismate mutase	NA	NA	NA	NA	NA
AZW59995.1|971544_972444_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZW59996.1|972440_973769_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZW59997.1|973783_974455_+	cytidylate kinase	NA	NA	NA	NA	NA
AZW59998.1|974627_976358_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZW59999.1|976359_976719_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZW60000.1|976910_977225_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZW60001.1|977267_978488_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZW60002.1|978484_979426_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZW60003.1|979422_980412_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZW60004.1|980446_981031_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZW60005.1|981129_982080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60006.1|982160_983072_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZW60007.1|983132_984278_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZW60008.1|984297_985212_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZW60009.1|985283_986033_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZW60010.1|986032_986962_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZW60011.1|987205_989032_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW60012.1|989114_989756_+	peroxiredoxin	NA	NA	NA	NA	NA
AZW60013.1|989945_990980_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60014.1|992816_993881_+	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZW62607.1|994678_995587_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZW60015.1|997074_998349_+	radical SAM protein	NA	NA	NA	NA	NA
AZW60016.1|998502_998883_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60017.1|998890_999763_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZW60018.1|1000068_1000449_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZW60019.1|1000659_1001385_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZW60020.1|1001480_1002431_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60021.1|1002535_1003585_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZW60022.1|1003722_1004739_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 8
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1028543	1083635	4110543	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
AZW60037.1|1028543_1029494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60038.1|1029592_1030333_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZW60039.1|1030527_1032564_+	transketolase	NA	NA	NA	NA	NA
AZW60040.1|1032581_1033592_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZW60041.1|1033709_1034903_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZW60042.1|1034932_1035706_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW60043.1|1035702_1036893_-	acetate kinase	NA	NA	NA	NA	NA
AZW60044.1|1036918_1037857_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZW62609.1|1037853_1040202_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZW60045.1|1040356_1041064_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW60046.1|1041101_1042235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60047.1|1042511_1043060_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZW60048.1|1043078_1043564_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW60049.1|1043741_1044680_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZW60050.1|1044682_1045000_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60051.1|1045045_1045990_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60052.1|1047670_1048321_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZW60053.1|1048374_1048710_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60054.1|1048706_1049567_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZW60055.1|1049583_1049865_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60056.1|1049938_1050202_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZW60057.1|1050445_1051396_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60058.1|1051694_1052432_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZW60059.1|1052867_1053191_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZW60060.1|1053225_1053786_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZW60061.1|1053906_1054782_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZW60062.1|1054794_1055742_+	motility protein MotB	NA	NA	NA	NA	NA
AZW60063.1|1055843_1056137_+	response regulator	NA	NA	NA	NA	NA
AZW60064.1|1056163_1058221_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZW60065.1|1058235_1058736_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZW60066.1|1058809_1060516_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZW60067.1|1061379_1062432_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZW60068.1|1062484_1062874_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZW60069.1|1062882_1063515_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZW60070.1|1063614_1064631_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW62610.1|1065461_1066469_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW60071.1|1066465_1068109_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZW60072.1|1068105_1069008_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZW60073.1|1069133_1069607_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZW60074.1|1069596_1070619_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZW60075.1|1070615_1072043_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZW60076.1|1072980_1073997_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW60077.1|1074329_1075265_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZW60078.1|1075314_1077195_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZW60079.1|1077261_1077606_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZW60080.1|1077750_1078887_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZW60081.1|1078883_1079957_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZW60082.1|1080114_1081551_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZW62611.1|1081641_1082283_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW60083.1|1082618_1083635_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1089625	1161645	4110543	transposase,tRNA,protease,holin	Planktothrix_phage(18.18%)	55	NA	NA
AZW60087.1|1089625_1090039_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW60088.1|1090040_1090400_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60089.1|1090442_1091987_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZW60090.1|1092070_1092901_+	transglycosylase	NA	NA	NA	NA	NA
AZW60091.1|1092935_1094090_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZW60092.1|1094132_1095005_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60093.1|1095121_1097410_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW60094.1|1098616_1099081_+	barstar family protein 2	NA	NA	NA	NA	NA
AZW60095.1|1099107_1100058_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62613.1|1100425_1101202_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZW60096.1|1101246_1102104_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZW60097.1|1102125_1103142_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZW60098.1|1103276_1104317_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZW60099.1|1104511_1106593_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZW60100.1|1106828_1108322_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZW60101.1|1108552_1109347_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW60102.1|1109567_1110926_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZW60103.1|1110922_1111765_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZW60104.1|1111783_1113670_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZW60105.1|1113907_1114540_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZW60106.1|1114558_1115161_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60107.1|1115312_1116263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60108.1|1117065_1117866_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60109.1|1117909_1118896_-	homoserine kinase	NA	NA	NA	NA	NA
AZW60110.1|1119035_1120049_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZW60111.1|1120045_1120996_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60112.1|1121108_1121567_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZW60113.1|1121603_1122917_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60114.1|1122934_1123306_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZW60115.1|1123302_1124766_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZW60116.1|1124858_1125635_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW60117.1|1125616_1128496_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZW60118.1|1129795_1130620_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZW60119.1|1130619_1131498_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW60120.1|1132402_1133518_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60121.1|1133525_1134341_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZW60122.1|1134337_1136203_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZW60123.1|1136281_1136914_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60124.1|1136910_1137213_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60125.1|1137255_1138776_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZW60126.1|1138782_1139538_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW60127.1|1139567_1140672_-	peptide chain release factor 2	NA	NA	NA	NA	NA
AZW62614.1|1140774_1142475_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZW60128.1|1142456_1143434_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60129.1|1143443_1144724_+	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZW60130.1|1144716_1145412_+	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZW60131.1|1145445_1146273_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZW60132.1|1146554_1149785_+	autotransporter SphB3	NA	NA	NA	NA	NA
AZW60133.1|1150053_1150230_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60134.1|1150520_1154447_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZW60135.1|1156346_1158143_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60136.1|1158142_1159111_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW60137.1|1159180_1160026_+	PHP domain-containing protein	NA	NA	NA	NA	NA
AZW60138.1|1160093_1160648_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZW60139.1|1160694_1161645_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
>prophage 10
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1321070	1390605	4110543	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZW60268.1|1321070_1322021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60269.1|1322789_1323428_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW62623.1|1324317_1324764_+	glutamate racemase	NA	NA	NA	NA	NA
AZW60270.1|1324845_1325547_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZW60271.1|1325547_1326315_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZW60272.1|1326311_1327550_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZW60273.1|1327549_1328476_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZW60274.1|1328578_1329694_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60275.1|1329709_1330660_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60276.1|1331013_1331595_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZW60277.1|1331591_1332425_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZW62624.1|1332635_1333949_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZW60278.1|1334125_1335007_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZW60279.1|1335026_1335878_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZW60280.1|1335930_1337019_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZW60281.1|1337129_1338257_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW62625.1|1338491_1339103_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW60282.1|1340372_1340750_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZW62626.1|1340897_1341395_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60283.1|1341391_1341919_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZW60284.1|1342052_1342868_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60285.1|1342880_1344062_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW60286.1|1344109_1345003_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZW62627.1|1345129_1345600_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60287.1|1345725_1346553_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZW60288.1|1346581_1347358_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZW60289.1|1347354_1347648_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZW60290.1|1347644_1348109_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW60291.1|1348120_1348906_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZW60292.1|1348931_1349432_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZW60293.1|1349514_1350693_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZW60294.1|1352320_1352656_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZW60295.1|1352843_1354292_+	CoA transferase	NA	NA	NA	NA	NA
AZW62628.1|1354349_1354694_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZW60296.1|1354800_1355340_-	peroxiredoxin	NA	NA	NA	NA	NA
AZW60297.1|1355432_1356383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60298.1|1356481_1357432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60299.1|1357418_1357901_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60300.1|1358170_1358602_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60301.1|1358783_1359188_-	DoxX family protein	NA	NA	NA	NA	NA
AZW60302.1|1360424_1360748_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60303.1|1360750_1361638_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZW60304.1|1361670_1362096_-	universal stress protein	NA	NA	NA	NA	NA
AZW60305.1|1362167_1362521_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60306.1|1362760_1363267_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60307.1|1363305_1364637_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZW60308.1|1364696_1365512_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZW60309.1|1365508_1366363_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZW62629.1|1369425_1371969_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZW60310.1|1373335_1375090_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZW60311.1|1375086_1377207_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZW60312.1|1377211_1379407_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZW62630.1|1379403_1382745_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZW60313.1|1385547_1386498_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60314.1|1386563_1386743_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62631.1|1386859_1387582_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW60315.1|1387601_1388747_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZW60316.1|1389654_1390605_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1451095	1506583	4110543	transposase,protease	Mollivirus(16.67%)	56	NA	NA
AZW60364.1|1451095_1452046_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60365.1|1453247_1453694_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZW60366.1|1453686_1455162_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZW60367.1|1455158_1455914_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZW60368.1|1455906_1456917_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZW60369.1|1456906_1458583_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZW60370.1|1458895_1459228_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZW60371.1|1459241_1459637_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60372.1|1459646_1459973_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZW60373.1|1459969_1460296_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW60374.1|1460222_1461245_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW60375.1|1461241_1461622_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZW60376.1|1461639_1462068_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZW60377.1|1462075_1463449_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZW62634.1|1463589_1463967_-	flagellar protein	NA	NA	NA	NA	NA
AZW60378.1|1464229_1465537_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZW60379.1|1465597_1466428_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW60380.1|1466424_1466913_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZW60381.1|1466954_1468475_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZW62635.1|1468518_1468995_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW60382.1|1469798_1472396_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZW60383.1|1472425_1473247_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZW60384.1|1473973_1474723_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZW60385.1|1474855_1475785_+	elongation factor Ts	NA	NA	NA	NA	NA
AZW60386.1|1475882_1476599_+	UMP kinase	NA	NA	NA	NA	NA
AZW60387.1|1476613_1477174_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZW60388.1|1477211_1478105_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZW60389.1|1478124_1478982_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZW60390.1|1478978_1480178_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZW60391.1|1480217_1481552_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZW60392.1|1481604_1483941_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZW62636.1|1484066_1484630_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZW60393.1|1484638_1485730_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZW60394.1|1485801_1486257_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZW60395.1|1486257_1487052_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZW60396.1|1487048_1488230_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZW60397.1|1488216_1488822_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZW60398.1|1488818_1489592_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZW60399.1|1489603_1490431_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZW60400.1|1490592_1492956_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZW60401.1|1493023_1493743_-	GMP synthase	NA	NA	NA	NA	NA
AZW60402.1|1493866_1494292_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZW60403.1|1494326_1495277_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60404.1|1495394_1496321_+	paraslipin	NA	NA	NA	NA	NA
AZW60405.1|1496386_1497544_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZW60406.1|1497524_1497992_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZW60407.1|1498139_1499090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60408.1|1499106_1499541_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZW60409.1|1499530_1499881_+	RnfH family protein	NA	NA	NA	NA	NA
AZW60410.1|1500077_1501232_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW60411.1|1501228_1502401_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW60412.1|1502448_1503342_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW60413.1|1503387_1503825_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW60414.1|1503884_1504574_+	VIT family protein	NA	NA	NA	NA	NA
AZW60415.1|1504583_1505534_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60416.1|1505632_1506583_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1686898	1761086	4110543	transposase,protease	Bacillus_phage(10.0%)	59	NA	NA
AZW60567.1|1686898_1687849_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60568.1|1688131_1688857_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AZW62641.1|1688864_1689986_+	transferase	NA	NA	NA	NA	NA
AZW60569.1|1690110_1690383_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
AZW60570.1|1690387_1691152_-	YdcF family protein	NA	NA	NA	NA	NA
AZW60571.1|1691164_1692130_-	heptosyltransferase II	NA	NA	NA	NA	NA
AZW60572.1|1692241_1694017_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.5	4.0e-50
AZW60573.1|1693989_1695489_-	MFS transporter	NA	NA	NA	NA	NA
AZW60574.1|1695572_1696118_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60575.1|1696114_1697017_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZW60576.1|1697050_1698514_-	ribonuclease G	NA	NA	NA	NA	NA
AZW60577.1|1698557_1699508_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60578.1|1699494_1699710_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60579.1|1705986_1708734_+	autotransporter Vag8	NA	NA	NA	NA	NA
AZW60580.1|1708754_1709378_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZW60581.1|1709389_1709860_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZW60582.1|1709871_1710258_-	ribosome silencing factor	NA	NA	NA	NA	NA
AZW60583.1|1710319_1710913_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZW60584.1|1710903_1711815_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZW60585.1|1711830_1713204_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZW60586.1|1713238_1713970_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW60587.1|1714046_1715645_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZW60588.1|1715705_1717061_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZW60589.1|1717095_1718421_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZW60590.1|1718602_1719535_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZW60591.1|1719545_1721039_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW60592.1|1721035_1721959_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW60593.1|1721961_1723224_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW62642.1|1723243_1724257_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZW60594.1|1724329_1724653_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW60595.1|1724649_1725924_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZW60596.1|1726066_1727017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60597.1|1727013_1728651_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZW60598.1|1728655_1729495_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW60599.1|1729491_1730508_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW60600.1|1730615_1732190_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60601.1|1732609_1734154_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZW60602.1|1734258_1735326_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZW60603.1|1735344_1736931_-	multidrug resistance protein	NA	NA	NA	NA	NA
AZW60604.1|1736927_1738142_-	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW60605.1|1739690_1740179_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60606.1|1740238_1741096_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW60607.1|1741158_1742109_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW60608.1|1742171_1743161_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AZW60609.1|1743235_1744117_-|protease	protease HtpX	protease	NA	NA	NA	NA
AZW60610.1|1745174_1746026_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW60611.1|1746042_1746612_-	phosphohydrolase	NA	NA	NA	NA	NA
AZW60612.1|1746642_1747506_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW60613.1|1747665_1748742_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZW62643.1|1748806_1750504_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW60614.1|1750520_1751351_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZW60615.1|1751379_1752402_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60616.1|1752931_1753882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60617.1|1753878_1755201_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60618.1|1755301_1755619_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60619.1|1755752_1757066_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZW60620.1|1757096_1758734_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZW60621.1|1759357_1759834_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZW60622.1|1760135_1761086_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1800199	1848214	4110543	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
AZW60660.1|1800199_1801150_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60661.1|1801248_1803849_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZW60662.1|1803955_1804960_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW60663.1|1805068_1806409_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZW60664.1|1806449_1807478_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60665.1|1807673_1808219_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60666.1|1808215_1808776_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZW60667.1|1808874_1809825_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60668.1|1809862_1810450_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZW60669.1|1810467_1810851_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZW60670.1|1812210_1813503_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZW60671.1|1813637_1814678_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZW60672.1|1814775_1815792_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW60673.1|1816059_1816707_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW60674.1|1816832_1817591_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZW62648.1|1817665_1818355_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZW60675.1|1818372_1819257_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZW60676.1|1819253_1820033_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZW60677.1|1820059_1820737_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62649.1|1821025_1821778_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60678.1|1821896_1823297_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZW60679.1|1823320_1823719_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZW60680.1|1823894_1824095_+	copper chaperone	NA	NA	NA	NA	NA
AZW60681.1|1824233_1824962_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZW60682.1|1825095_1826511_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZW60683.1|1826514_1827378_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZW60684.1|1827390_1828140_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZW60685.1|1828322_1830338_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZW62650.1|1830319_1830868_-	arylesterase	NA	NA	NA	NA	NA
AZW60686.1|1830944_1831664_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZW60687.1|1831762_1832713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60688.1|1832811_1833762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60689.1|1833910_1834249_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZW60690.1|1834306_1834468_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZW60691.1|1834499_1834700_-	CsbD family protein	NA	NA	NA	NA	NA
AZW60692.1|1834965_1837539_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW60693.1|1837609_1840183_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW60694.1|1842709_1843198_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZW60695.1|1843289_1844441_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW60696.1|1844494_1845316_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZW60697.1|1845354_1846584_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZW60698.1|1846712_1847153_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZW60699.1|1847097_1847277_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60700.1|1847263_1848214_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1851607	1912812	4110543	transposase,tRNA,protease	Lake_Baikal_phage(21.43%)	53	NA	NA
AZW60705.1|1851607_1854469_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZW60706.1|1854458_1855424_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZW60707.1|1855483_1857478_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZW60708.1|1857576_1858527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60709.1|1858523_1858898_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60710.1|1859159_1860368_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZW60711.1|1860364_1862665_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZW60712.1|1862717_1865330_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW60713.1|1865689_1867615_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZW60714.1|1867611_1868508_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZW60715.1|1868514_1869654_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZW60716.1|1869653_1870475_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZW60717.1|1872045_1872375_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW60718.1|1872757_1874014_+	autotransporter Phg	NA	NA	NA	NA	NA
AZW60719.1|1874088_1874370_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60720.1|1874411_1874732_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60721.1|1875038_1875242_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZW60722.1|1875325_1875892_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZW60723.1|1876237_1876438_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZW60724.1|1876549_1877128_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZW60725.1|1877306_1878617_+	trigger factor	NA	NA	NA	NA	NA
AZW60726.1|1878619_1879273_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZW60727.1|1879377_1880682_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZW60728.1|1880870_1883324_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZW60729.1|1883447_1884398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60730.1|1884625_1885849_+	CoA transferase	NA	NA	NA	NA	NA
AZW60731.1|1885914_1886886_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW60732.1|1886898_1887354_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW60733.1|1887367_1888171_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW60734.1|1888167_1888599_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60735.1|1888595_1889753_+	thiolase	NA	NA	NA	NA	NA
AZW60736.1|1889774_1890551_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW60737.1|1892715_1893432_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW60738.1|1893424_1894066_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW60739.1|1894100_1894832_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60740.1|1894849_1895062_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60741.1|1895632_1896583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60742.1|1898140_1898869_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZW60743.1|1898919_1900122_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW60744.1|1900199_1902236_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZW60745.1|1902488_1902980_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZW60746.1|1903195_1903708_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZW60747.1|1903725_1904937_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZW60748.1|1904974_1905385_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZW60749.1|1905386_1905710_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZW60750.1|1905712_1906225_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZW60751.1|1906354_1908217_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZW60752.1|1908226_1908568_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZW60753.1|1908567_1908762_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZW60754.1|1908886_1909780_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZW60755.1|1909776_1910727_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60756.1|1910851_1911661_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW60757.1|1911861_1912812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1940595	1992392	4110543	transposase,tRNA,protease	Klosneuvirus(22.22%)	50	NA	NA
AZW60777.1|1940595_1943220_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZW60778.1|1943206_1943461_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZW60779.1|1943527_1944109_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60780.1|1944412_1944673_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZW60781.1|1944838_1945462_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZW60782.1|1945461_1946235_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZW60783.1|1946231_1947440_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZW60784.1|1947465_1947939_-	RidA family protein	NA	NA	NA	NA	NA
AZW60785.1|1948012_1948963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60786.1|1949061_1950012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60787.1|1950110_1951460_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZW60788.1|1952225_1952981_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZW60789.1|1953073_1955956_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZW60790.1|1956278_1956704_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZW60791.1|1956731_1957880_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZW60792.1|1957876_1958383_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZW60793.1|1958389_1959685_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZW60794.1|1959725_1961030_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW60795.1|1961031_1961670_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60796.1|1961672_1962833_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZW60797.1|1962859_1964215_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZW60798.1|1964218_1965289_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZW60799.1|1965427_1965664_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZW60800.1|1965751_1966858_+	GTPase HflX	NA	NA	NA	NA	NA
AZW60801.1|1966823_1968128_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZW60802.1|1968146_1969046_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZW60803.1|1969229_1970387_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZW60804.1|1970451_1971759_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZW60805.1|1971872_1972412_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW60806.1|1972689_1972902_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZW60807.1|1972921_1974952_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZW62652.1|1975751_1977920_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZW60808.1|1978329_1978629_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60809.1|1978913_1979327_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZW60810.1|1979286_1980237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60811.1|1980223_1980424_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60812.1|1980436_1981522_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZW60813.1|1981537_1982299_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW60814.1|1982295_1983219_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZW60815.1|1983317_1983842_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW60816.1|1983850_1984594_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZW60817.1|1984689_1984929_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60818.1|1984942_1985095_-	lipoprotein	NA	NA	NA	NA	NA
AZW60819.1|1985180_1986671_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZW60820.1|1986762_1987701_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZW60821.1|1987697_1987874_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZW60822.1|1987876_1988539_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZW62653.1|1990160_1990304_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZW60823.1|1990300_1991275_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60824.1|1991441_1992392_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	1998362	2054456	4110543	transposase	uncultured_Caudovirales_phage(20.0%)	55	NA	NA
AZW60830.1|1998362_1999313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60831.1|2000358_2002224_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW62654.1|2002481_2004002_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW60832.1|2004089_2004740_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZW60833.1|2005688_2006984_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZW60834.1|2007005_2007890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62655.1|2007988_2008864_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZW60835.1|2008853_2009210_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZW60836.1|2009283_2010315_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW60837.1|2010444_2010624_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZW60838.1|2010721_2011246_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZW60839.1|2011256_2012093_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW60840.1|2012205_2012577_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW60841.1|2012573_2013125_+	ATPase	NA	NA	NA	NA	NA
AZW60842.1|2013140_2014832_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZW60843.1|2014880_2015561_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW60844.1|2015808_2016273_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60845.1|2016442_2017372_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW60846.1|2017384_2018032_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60847.1|2018105_2019923_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZW60848.1|2020006_2020957_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60849.1|2021609_2022560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60850.1|2022578_2022926_-	GFA family protein	NA	NA	NA	NA	NA
AZW60851.1|2022954_2024394_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZW60852.1|2024412_2024808_-	VOC family protein	NA	NA	NA	NA	NA
AZW60853.1|2024982_2025591_+	peptidase S16	NA	NA	NA	NA	NA
AZW60854.1|2025603_2026422_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZW60855.1|2026373_2027348_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW60856.1|2027376_2028438_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60857.1|2028434_2030651_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZW60858.1|2030664_2031123_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZW60859.1|2031280_2031625_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60860.1|2031781_2032687_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62656.1|2032773_2033787_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZW60861.1|2035766_2036783_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW60862.1|2036925_2038278_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZW60863.1|2038452_2038749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60864.1|2039886_2040837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60865.1|2041322_2041499_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60866.1|2041470_2042109_+	hypothetical protein	NA	NA	NA	NA	NA
AZW60867.1|2042183_2043155_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW60868.1|2043158_2044013_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZW60869.1|2044031_2044853_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW60870.1|2044884_2045679_+	amidase	NA	NA	NA	NA	NA
AZW60871.1|2045727_2046333_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62657.1|2046329_2047124_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW60872.1|2047409_2048915_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZW60873.1|2048956_2049739_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZW60874.1|2049808_2050255_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60875.1|2050251_2051478_-	NnrS family protein	NA	NA	NA	NA	NA
AZW60876.1|2051470_2051875_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZW60877.1|2052034_2052337_+	SelT/selW/selH domain protein	NA	NA	NA	NA	NA
AZW60878.1|2052333_2053284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW60879.1|2053270_2053462_-	hypothetical protein	NA	NA	NA	NA	NA
AZW60880.1|2053505_2054456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	2344468	2407009	4110543	transposase,tRNA	Pandoravirus(20.0%)	54	NA	NA
AZW61094.1|2344468_2344975_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZW61095.1|2344967_2345816_-	hydrolase	NA	NA	NA	NA	NA
AZW61096.1|2345913_2346456_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61097.1|2346499_2347450_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61098.1|2347605_2347932_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZW61099.1|2347928_2348213_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZW61100.1|2348209_2348689_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZW61101.1|2348685_2350314_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZW61102.1|2350310_2350655_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZW61103.1|2350654_2353588_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZW61104.1|2354746_2355697_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61105.1|2355795_2356092_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61106.1|2356198_2357116_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61107.1|2357120_2357834_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW61108.1|2357847_2358819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61109.1|2360538_2360919_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61110.1|2360922_2362110_+	MFS transporter	NA	NA	NA	NA	NA
AZW62668.1|2362548_2363271_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZW61111.1|2363564_2364515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61112.1|2364511_2364940_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62669.1|2366341_2367304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61113.1|2367419_2368373_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61114.1|2368382_2369375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61115.1|2369426_2370182_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW61116.1|2370246_2370936_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW61117.1|2371157_2372108_+	hydrolase	NA	NA	NA	NA	NA
AZW61118.1|2372138_2373335_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW62670.1|2373331_2374105_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW62671.1|2374172_2375144_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61119.1|2375229_2376174_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61120.1|2376151_2377021_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZW62672.1|2377264_2377888_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZW61121.1|2378202_2378502_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW61122.1|2378515_2381590_-	autotransporter SphB2	NA	NA	NA	NA	NA
AZW61123.1|2381719_2382394_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW61124.1|2382386_2384201_+	histidine kinase	NA	NA	NA	NA	NA
AZW61125.1|2384254_2385202_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61126.1|2385306_2386257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61127.1|2386809_2388435_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZW62673.1|2388484_2389519_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZW61128.1|2389521_2390868_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62674.1|2390864_2392379_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61129.1|2392369_2393380_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61130.1|2393853_2394795_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZW61131.1|2394803_2395772_-	AAA family ATPase	NA	NA	NA	NA	NA
AZW61132.1|2397311_2398280_+	transporter	NA	NA	NA	NA	NA
AZW61133.1|2398457_2399447_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61134.1|2399493_2400252_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW61135.1|2400441_2401179_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZW61136.1|2401277_2402228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61137.1|2402412_2403195_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZW61138.1|2403188_2403890_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW61139.1|2404129_2404732_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61140.1|2406058_2407009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	2446286	2565079	4110543	transposase,tRNA,protease	Planktothrix_phage(13.04%)	113	NA	NA
AZW61167.1|2446286_2447237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61168.1|2447256_2448162_-	pirin family protein	NA	NA	NA	NA	NA
AZW61169.1|2448239_2448938_-	pirin family protein	NA	NA	NA	NA	NA
AZW61170.1|2449097_2450042_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61171.1|2450051_2451542_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZW61172.1|2451538_2452606_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZW61173.1|2452669_2454082_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZW61174.1|2454267_2455488_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZW61175.1|2455509_2456460_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61176.1|2456558_2457209_-	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZW61177.1|2457326_2459129_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZW61178.1|2459006_2460746_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZW61179.1|2460780_2461686_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW61180.1|2461867_2463244_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW61181.1|2463410_2464151_-	ribonuclease PH	NA	NA	NA	NA	NA
AZW61182.1|2464287_2465214_+	YicC family protein	NA	NA	NA	NA	NA
AZW61183.1|2465486_2465642_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61184.1|2465654_2465783_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61185.1|2465779_2466064_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW61186.1|2466122_2467613_-	AMP nucleosidase	NA	NA	NA	NA	NA
AZW61187.1|2467857_2468457_+	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZW61188.1|2468461_2469232_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW61189.1|2469469_2470183_+	cytochrome C	NA	NA	NA	NA	NA
AZW61190.1|2470179_2471097_+	cytochrome C	NA	NA	NA	NA	NA
AZW61191.1|2471217_2471865_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZW61192.1|2471906_2472110_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZW61193.1|2472134_2474414_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZW61194.1|2474426_2475155_-	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZW61195.1|2475151_2475811_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZW61196.1|2475879_2476632_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZW61197.1|2476813_2477764_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61198.1|2478656_2479562_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZW61199.1|2479573_2480701_+	lipoprotein	NA	NA	NA	NA	NA
AZW61200.1|2480789_2481404_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZW61201.1|2482060_2483248_-	cupin	NA	NA	NA	NA	NA
AZW62677.1|2483244_2485842_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZW61202.1|2486096_2486312_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZW61203.1|2486767_2487322_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZW61204.1|2487589_2488150_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW61205.1|2488261_2489566_+	peptidase	NA	NA	NA	NA	NA
AZW61206.1|2489562_2491074_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AZW61207.1|2491179_2492181_+	aminopeptidase	NA	NA	NA	NA	NA
AZW61208.1|2492161_2493283_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZW61209.1|2493206_2493395_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61210.1|2493381_2494332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61211.1|2494328_2494955_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZW62678.1|2495020_2495866_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZW61212.1|2495969_2496569_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61213.1|2496565_2497330_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZW61214.1|2497399_2498350_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61215.1|2498448_2499057_-	recombination protein RecR	NA	NA	NA	NA	NA
AZW61216.1|2499107_2499434_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZW61217.1|2499480_2501706_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZW61218.1|2502373_2505778_-	nuclease	NA	NA	NA	NA	NA
AZW61219.1|2505790_2508451_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61220.1|2508654_2509857_-	MFS transporter	NA	NA	NA	NA	NA
AZW61221.1|2510543_2511656_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZW61222.1|2511662_2512613_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61223.1|2512711_2513113_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZW61224.1|2513185_2513764_-|protease	protease	protease	NA	NA	NA	NA
AZW62679.1|2513881_2514370_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZW61225.1|2514383_2515316_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZW61226.1|2515353_2516241_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZW61227.1|2516398_2518093_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZW61228.1|2518109_2519366_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW61229.1|2519503_2520049_-	acyl dehydratase	NA	NA	NA	NA	NA
AZW61230.1|2520080_2521640_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZW61231.1|2521768_2522521_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZW61232.1|2522542_2523235_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW61233.1|2523257_2524049_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61234.1|2524075_2524981_-	agmatinase	NA	NA	NA	NA	NA
AZW61235.1|2525173_2526010_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61236.1|2526101_2527124_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZW61237.1|2527260_2528313_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZW61238.1|2528317_2529508_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZW61239.1|2529510_2529990_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZW61240.1|2530175_2530655_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW61241.1|2530662_2530899_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61242.1|2530918_2531320_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZW61243.1|2531322_2531574_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZW61244.1|2531628_2532510_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZW61245.1|2532734_2533181_+	GFA family protein	NA	NA	NA	NA	NA
AZW61246.1|2533265_2534330_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZW61247.1|2534466_2535048_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZW61248.1|2535282_2536413_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW61249.1|2536590_2537817_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZW61250.1|2537875_2538391_+	transporter	NA	NA	NA	NA	NA
AZW61251.1|2538413_2538740_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZW61252.1|2538773_2539964_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZW61253.1|2540037_2540442_+	GFA family protein	NA	NA	NA	NA	NA
AZW61254.1|2540658_2541609_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61255.1|2541707_2542478_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZW61256.1|2542474_2543146_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZW61257.1|2543142_2543784_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZW61258.1|2543796_2544717_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZW61259.1|2544877_2546038_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61260.1|2546079_2547030_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZW61261.1|2547628_2547853_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61262.1|2548017_2549712_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZW61263.1|2549833_2550103_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZW61264.1|2550218_2550617_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZW61265.1|2550627_2551584_-	glutathione synthetase	NA	NA	NA	NA	NA
AZW61266.1|2551720_2552266_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZW61267.1|2552286_2554236_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZW61268.1|2554623_2555400_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW61269.1|2555405_2555798_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61270.1|2556219_2557170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61271.1|2557267_2558218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61272.1|2558214_2559312_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZW61273.1|2559343_2560294_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61274.1|2562075_2563317_-	MFS transporter	NA	NA	NA	NA	NA
AZW61275.1|2563328_2564102_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZW61276.1|2564128_2565079_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	2691172	2731840	4110543	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AZW61383.1|2691172_2692123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61384.1|2692233_2692416_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61385.1|2692515_2693112_-	lipoprotein	NA	NA	NA	NA	NA
AZW61386.1|2693295_2694387_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61387.1|2694886_2695297_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61388.1|2695355_2695697_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZW61389.1|2695702_2698120_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW61390.1|2698132_2699155_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZW61391.1|2699229_2699589_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZW61392.1|2699604_2699802_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZW61393.1|2700137_2701088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61394.1|2701074_2701263_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61395.1|2701282_2701732_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZW61396.1|2701728_2702679_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61397.1|2702789_2704238_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW61398.1|2704352_2704634_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61399.1|2704737_2705688_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61400.1|2705932_2706646_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW61401.1|2706768_2706996_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW61402.1|2707290_2707929_-	DedA family protein	NA	NA	NA	NA	NA
AZW61403.1|2708001_2709072_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZW61404.1|2709068_2710019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61405.1|2710434_2710959_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZW61406.1|2710962_2711232_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61407.1|2711430_2712492_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW61408.1|2712575_2714210_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZW61409.1|2714211_2715015_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW61410.1|2715043_2716003_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW61411.1|2716006_2717521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61412.1|2717557_2718562_-	peptidase M20	NA	NA	NA	NA	NA
AZW61413.1|2718569_2718818_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61414.1|2718992_2719463_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZW61415.1|2719498_2720110_-	LysE family translocator	NA	NA	NA	NA	NA
AZW61416.1|2720140_2720764_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW61417.1|2720844_2722377_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW61418.1|2722411_2723653_-	MFS transporter	NA	NA	NA	NA	NA
AZW61419.1|2723696_2724728_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZW61420.1|2724724_2725894_-	amine oxidase	NA	NA	NA	NA	NA
AZW61421.1|2725887_2726568_-	anti-sigma factor	NA	NA	NA	NA	NA
AZW61422.1|2726729_2727572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61423.1|2727734_2728706_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW61424.1|2728877_2729756_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW61425.1|2729778_2730849_-	FUSC family protein	NA	NA	NA	NA	NA
AZW61426.1|2730889_2731840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	2793413	2865316	4110543	transposase	Moraxella_phage(14.29%)	54	NA	NA
AZW61477.1|2793413_2794364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61478.1|2794360_2802022_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZW61479.1|2802262_2806309_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZW61480.1|2806621_2807203_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW61481.1|2807199_2808498_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW61482.1|2808577_2809606_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW61483.1|2809529_2809880_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61484.1|2810812_2811763_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61485.1|2812079_2812685_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZW61486.1|2812738_2814052_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZW61487.1|2814126_2814597_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZW61488.1|2814596_2815385_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZW61489.1|2815395_2817048_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZW62690.1|2819246_2819753_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZW61490.1|2819749_2820514_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZW61491.1|2820529_2820814_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZW61492.1|2820878_2821868_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZW61493.1|2822039_2822969_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZW61494.1|2822940_2823627_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZW61495.1|2823660_2824206_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZW61496.1|2824250_2825516_+	peptidase M48	NA	NA	NA	NA	NA
AZW61497.1|2825512_2826415_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZW61498.1|2827596_2828541_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW61499.1|2828635_2830153_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61500.1|2830194_2831823_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW61501.1|2831930_2832812_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61502.1|2835924_2836299_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZW61503.1|2836323_2836662_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZW61504.1|2836705_2838340_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZW61505.1|2838378_2839725_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZW62691.1|2839832_2841254_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZW61506.1|2841323_2841908_-	nitroreductase	NA	NA	NA	NA	NA
AZW61507.1|2842010_2842961_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61508.1|2843095_2844202_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61509.1|2844212_2845310_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZW61510.1|2845454_2846660_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZW61511.1|2846666_2847188_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZW61512.1|2847184_2847676_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZW61513.1|2847672_2847924_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZW61514.1|2847904_2848390_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZW61515.1|2848525_2851987_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61516.1|2851983_2852889_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZW61517.1|2852898_2853330_-	lipoprotein	NA	NA	NA	NA	NA
AZW62692.1|2853576_2854080_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZW61518.1|2854091_2855558_+	MFS transporter	NA	NA	NA	NA	NA
AZW61519.1|2855632_2856508_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62693.1|2856504_2857512_-	biotin synthase	NA	NA	NA	NA	NA
AZW61520.1|2857979_2858285_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW61521.1|2858375_2858966_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61522.1|2859156_2860173_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW61523.1|2860364_2862701_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZW61524.1|2862783_2863218_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZW61525.1|2863316_2864267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61526.1|2864365_2865316_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	2873341	2930126	4110543	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
AZW61534.1|2873341_2874292_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61535.1|2875998_2876304_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61536.1|2876972_2877311_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW61537.1|2881863_2882466_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61538.1|2882562_2883852_+	MFS transporter	NA	NA	NA	NA	NA
AZW61539.1|2883909_2884641_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZW61540.1|2884637_2885441_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZW61541.1|2885437_2886526_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW61542.1|2886522_2887452_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW61543.1|2887600_2888746_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61544.1|2888767_2889718_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61545.1|2890048_2893870_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW61546.1|2894026_2894695_-	lipoprotein	NA	NA	NA	NA	NA
AZW61547.1|2894699_2896373_-	MCE family protein	NA	NA	NA	NA	NA
AZW61548.1|2896391_2897711_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZW61549.1|2897715_2900067_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZW62694.1|2900086_2902255_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZW61550.1|2902251_2907441_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZW61551.1|2907530_2907845_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZW61552.1|2908072_2908318_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZW61553.1|2908412_2908931_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZW61554.1|2909030_2910236_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZW61555.1|2910351_2911749_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZW61556.1|2911865_2912444_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZW61557.1|2912516_2913908_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZW61558.1|2914075_2915026_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61559.1|2915306_2915927_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZW61560.1|2915923_2916337_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZW61561.1|2916333_2917377_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZW61562.1|2917432_2917621_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61563.1|2917630_2918395_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZW61564.1|2918485_2919142_+	adenylate kinase	NA	NA	NA	NA	NA
AZW61565.1|2919233_2919992_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW61566.1|2920017_2921619_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZW61567.1|2921819_2922824_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AZW61568.1|2922924_2923188_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZW61569.1|2923305_2924082_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZW61570.1|2924672_2925623_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61571.1|2928006_2929119_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZW61572.1|2929175_2930126_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	2960512	3004203	4110543	transposase	Planktothrix_phage(33.33%)	42	NA	NA
AZW61601.1|2960512_2961463_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61602.1|2961449_2961695_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61603.1|2961583_2962480_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZW61604.1|2964757_2966983_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZW61605.1|2967147_2968236_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZW61606.1|2968192_2968846_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW61607.1|2968893_2969691_+	MetQ/NlpA family lipoprotein	NA	NA	NA	NA	NA
AZW61608.1|2970222_2971173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61609.1|2971253_2972402_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW61610.1|2972458_2973409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61611.1|2973395_2973614_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61612.1|2973507_2973813_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW61613.1|2973841_2974276_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW61614.1|2974277_2975522_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW61615.1|2975518_2976229_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62696.1|2976243_2977155_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61616.1|2977517_2977922_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61617.1|2977918_2978377_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61618.1|2978383_2979292_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62697.1|2979288_2980155_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW61619.1|2980141_2980969_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW61620.1|2980979_2982107_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZW61621.1|2983184_2984423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61622.1|2984464_2985727_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61623.1|2985733_2986486_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW61624.1|2986537_2986723_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61625.1|2986998_2987463_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZW61626.1|2987494_2988154_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZW61627.1|2988298_2990407_+	AsmA family protein	NA	NA	NA	NA	NA
AZW61628.1|2990403_2991354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61629.1|2991457_2992078_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62698.1|2992181_2992922_+	oxidoreductase	NA	NA	NA	NA	NA
AZW61630.1|2994056_2995181_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61631.1|2995226_2995595_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61632.1|2995836_2996787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61633.1|2997822_2998365_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61634.1|2998569_2998764_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61635.1|2998750_2999701_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61636.1|2999697_3000663_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61637.1|3000732_3001569_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZW61638.1|3002045_3003191_+	porin	NA	NA	NA	NA	NA
AZW61639.1|3003252_3004203_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	3188617	3249646	4110543	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZW61785.1|3188617_3189568_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61786.1|3189576_3190125_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZW61787.1|3190121_3190730_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW61788.1|3190912_3191383_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW61789.1|3191389_3192649_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW61790.1|3192701_3193514_-	oxidoreductase	NA	NA	NA	NA	NA
AZW61791.1|3193628_3194183_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW61792.1|3194192_3195182_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61793.1|3195361_3196081_-	VOC family protein	NA	NA	NA	NA	NA
AZW61794.1|3196097_3198833_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZW61795.1|3199012_3199999_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZW61796.1|3200040_3200535_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZW61797.1|3200646_3201570_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZW61798.1|3201798_3202983_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZW61799.1|3203171_3204398_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZW61800.1|3204402_3205224_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZW61801.1|3205236_3206187_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZW61802.1|3206183_3207590_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZW61803.1|3207586_3208660_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZW61804.1|3208656_3209850_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZW61805.1|3209846_3211379_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZW61806.1|3211375_3212545_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZW61807.1|3212534_3215372_-	Mur ligase family protein	NA	NA	NA	NA	NA
AZW62714.1|3215368_3217069_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZW61808.1|3217095_3217374_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZW61809.1|3217373_3218468_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZW61810.1|3218476_3218968_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZW61811.1|3219707_3221516_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZW61812.1|3221555_3222635_-	dihydroorotase	NA	NA	NA	NA	NA
AZW61813.1|3222631_3223825_-	amidohydrolase	NA	NA	NA	NA	NA
AZW61814.1|3223974_3224253_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZW61815.1|3224581_3224974_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62715.1|3231698_3232175_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW61816.1|3232327_3233440_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZW61817.1|3233507_3234068_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZW61818.1|3234091_3234424_-	cytochrome C	NA	NA	NA	NA	NA
AZW61819.1|3234407_3236096_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZW61820.1|3236215_3237004_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZW61821.1|3237711_3238662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61822.1|3239106_3239418_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZW61823.1|3239417_3239948_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61824.1|3240110_3241061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61825.1|3241159_3242110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61826.1|3242399_3242864_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZW61827.1|3242878_3244384_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZW61828.1|3244637_3246245_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW61829.1|3246300_3247206_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW61830.1|3247646_3248597_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61831.1|3248695_3249646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	3271371	3309786	4110543	transposase,holin	Tupanvirus(16.67%)	36	NA	NA
AZW61853.1|3271371_3271707_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW61854.1|3271706_3272549_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZW61855.1|3272647_3273598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61856.1|3273662_3274634_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61857.1|3274697_3275717_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZW62718.1|3275718_3277092_-	MFS transporter	NA	NA	NA	NA	NA
AZW61858.1|3277369_3278050_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZW61859.1|3278062_3280189_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZW61860.1|3280185_3281280_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZW61861.1|3281294_3282554_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW61862.1|3282573_3284298_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZW61863.1|3284536_3285289_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZW61864.1|3285427_3286378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62719.1|3286690_3288169_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZW61865.1|3288175_3289285_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZW61866.1|3289296_3289977_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW61867.1|3289998_3290754_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW62720.1|3290889_3291774_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW61868.1|3291861_3292443_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61869.1|3292535_3292658_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61870.1|3292703_3293003_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW62721.1|3293154_3293580_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61871.1|3295786_3296290_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW61872.1|3296305_3297256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61873.1|3297242_3297440_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61874.1|3297783_3298557_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61875.1|3298689_3299700_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61876.1|3299851_3301507_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW61877.1|3301561_3301903_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW61878.1|3301916_3303356_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW61879.1|3303488_3304304_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61880.1|3304322_3304511_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61881.1|3304497_3305448_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61882.1|3306835_3307783_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61883.1|3308009_3308750_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61884.1|3308835_3309786_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	3385193	3438934	4110543	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZW61936.1|3385193_3386144_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61937.1|3386548_3387193_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZW61938.1|3387217_3387802_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZW61939.1|3387902_3388520_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZW61940.1|3388522_3390238_-	urease subunit alpha	NA	NA	NA	NA	NA
AZW61941.1|3390234_3390543_-	urease subunit beta	NA	NA	NA	NA	NA
AZW61942.1|3390559_3391195_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZW61943.1|3391221_3391524_-	urease subunit gamma	NA	NA	NA	NA	NA
AZW61944.1|3391624_3392479_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZW61945.1|3393060_3393333_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW61946.1|3393750_3394158_-	GFA family protein	NA	NA	NA	NA	NA
AZW61947.1|3394527_3395322_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61948.1|3395422_3396658_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW61949.1|3396726_3397743_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61950.1|3397739_3399131_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW61951.1|3399127_3400324_+	MFS transporter	NA	NA	NA	NA	NA
AZW61952.1|3400320_3401859_-	SpoVR family protein	NA	NA	NA	NA	NA
AZW61953.1|3401855_3403115_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61954.1|3405055_3406006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61955.1|3406772_3407867_-	CoA transferase	NA	NA	NA	NA	NA
AZW61956.1|3407859_3409194_-	CoA ligase	NA	NA	NA	NA	NA
AZW61957.1|3409147_3409831_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW61958.1|3409856_3411020_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW61959.1|3411016_3412018_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW61960.1|3412017_3412890_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW61961.1|3412886_3413636_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZW61962.1|3413632_3414424_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZW61963.1|3414420_3415560_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61964.1|3415868_3416621_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW61965.1|3416654_3417437_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW61966.1|3417440_3417830_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW61967.1|3418969_3419833_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW61968.1|3419868_3420957_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61969.1|3420953_3421904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61970.1|3421890_3422259_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61971.1|3422257_3425236_+	hypothetical protein	NA	NA	NA	NA	NA
AZW61972.1|3426162_3427041_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZW61973.1|3428989_3429940_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW61974.1|3429936_3430404_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZW61975.1|3430446_3431217_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW61976.1|3431237_3432038_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZW61977.1|3432048_3433458_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZW61978.1|3433552_3434338_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW61979.1|3434577_3435594_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW61980.1|3435701_3436094_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW61981.1|3436231_3436912_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZW61982.1|3436916_3437915_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW61983.1|3437983_3438934_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	3445089	3504389	4110543	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZW61987.1|3445089_3446853_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZW61988.1|3446964_3447843_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZW61989.1|3447955_3448771_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZW61990.1|3448774_3449026_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZW61991.1|3449110_3450127_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW61992.1|3450457_3450679_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61993.1|3453039_3453957_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW61994.1|3454454_3455663_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW61995.1|3455742_3457314_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW61996.1|3457431_3458367_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZW61997.1|3458555_3459500_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZW61998.1|3459568_3459784_-	hypothetical protein	NA	NA	NA	NA	NA
AZW61999.1|3460067_3465785_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZW62000.1|3465790_3466918_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZW62001.1|3466973_3467600_+	aminotransferase	NA	NA	NA	NA	NA
AZW62002.1|3467871_3468888_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW62003.1|3468983_3469694_-	oxidoreductase	NA	NA	NA	NA	NA
AZW62725.1|3469690_3470680_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW62004.1|3470811_3472407_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZW62005.1|3472409_3473147_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62006.1|3473302_3474175_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZW62007.1|3474443_3475664_+	MFS transporter	NA	NA	NA	NA	NA
AZW62008.1|3475660_3476320_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW62009.1|3476391_3477024_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZW62010.1|3477053_3477572_+	flavin reductase	NA	NA	NA	NA	NA
AZW62011.1|3477582_3478692_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW62012.1|3478738_3479593_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZW62013.1|3479594_3480497_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62014.1|3481719_3482670_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62015.1|3484426_3485416_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62016.1|3485591_3486380_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZW62017.1|3486376_3487408_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZW62018.1|3487426_3487990_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZW62019.1|3488045_3489566_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZW62020.1|3489829_3490534_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW62021.1|3490541_3491279_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZW62022.1|3491384_3491759_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZW62023.1|3491801_3493091_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62024.1|3493087_3494257_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZW62025.1|3494253_3495093_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZW62026.1|3495152_3496088_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZW62027.1|3496100_3497051_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62028.1|3497149_3498112_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZW62029.1|3498143_3498503_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZW62030.1|3498627_3499530_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZW62031.1|3499531_3501304_-	peptidase M61	NA	NA	NA	NA	NA
AZW62032.1|3501338_3502115_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW62033.1|3503438_3504389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	3519327	3577400	4110543	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZW62045.1|3519327_3520278_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62046.1|3520406_3521540_-	peptidase	NA	NA	NA	NA	NA
AZW62047.1|3521583_3522489_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW62048.1|3522491_3524192_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZW62049.1|3524188_3525109_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW62050.1|3525116_3526094_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW62051.1|3526152_3527187_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW62052.1|3529161_3529398_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62053.1|3529524_3530388_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZW62054.1|3530476_3531298_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW62055.1|3531377_3532115_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW62056.1|3532111_3533104_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZW62057.1|3533217_3533880_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62058.1|3533924_3535073_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW62059.1|3537396_3538347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62060.1|3538687_3539638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62061.1|3539736_3540687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62062.1|3540983_3541481_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62063.1|3541523_3543299_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZW62728.1|3543345_3544173_+	copper resistance protein B	NA	NA	NA	NA	NA
AZW62064.1|3544179_3544914_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW62065.1|3546083_3546878_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62066.1|3547167_3547758_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW62067.1|3547791_3549120_-	amidase	NA	NA	NA	NA	NA
AZW62068.1|3549194_3550340_-	transporter	NA	NA	NA	NA	NA
AZW62069.1|3550451_3551450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62070.1|3551412_3551847_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZW62071.1|3553363_3554248_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW62072.1|3554244_3555450_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW62073.1|3555446_3556307_-	endonuclease	NA	NA	NA	NA	NA
AZW62074.1|3556419_3558210_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZW62075.1|3558250_3558916_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZW62076.1|3558916_3559225_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZW62729.1|3559390_3560677_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62077.1|3562110_3563061_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62078.1|3565012_3566227_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZW62079.1|3566332_3567322_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZW62080.1|3567318_3567927_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZW62081.1|3567939_3568569_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZW62082.1|3568565_3569186_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZW62083.1|3569217_3570009_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZW62084.1|3570851_3571316_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZW62085.1|3571334_3572261_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZW62086.1|3572314_3573601_-	cytochrome c	NA	NA	NA	NA	NA
AZW62087.1|3574531_3575404_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZW62088.1|3575400_3576351_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZW62089.1|3576449_3577400_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025073	Bordetella pertussis strain J384 chromosome, complete genome	4110543	4009611	4074523	4110543	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZW62478.1|4009611_4010097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62479.1|4010315_4011296_+	protein BugT	NA	NA	NA	NA	NA
AZW62480.1|4011562_4012372_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZW62481.1|4012411_4013092_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZW62482.1|4013085_4013544_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZW62483.1|4013555_4013918_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZW62484.1|4014000_4014684_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZW62485.1|4014739_4015048_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZW62486.1|4015066_4015381_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZW62487.1|4015377_4017852_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZW62488.1|4017859_4019251_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZW62489.1|4019247_4019433_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZW62490.1|4019411_4020113_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZW62491.1|4020109_4020931_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZW62750.1|4020911_4022036_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZW62492.1|4022028_4023048_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZW62493.1|4023253_4024288_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW62751.1|4024388_4025180_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW62494.1|4025262_4025637_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZW62495.1|4025614_4027024_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZW62496.1|4027016_4028399_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZW62497.1|4028733_4030338_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW62498.1|4030373_4031387_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW62499.1|4031397_4032324_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW62500.1|4032714_4033665_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62501.1|4033834_4035061_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZW62502.1|4035260_4036127_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZW62503.1|4036119_4037082_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZW62504.1|4037182_4038133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62505.1|4038231_4039182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62506.1|4039280_4040231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW62507.1|4040227_4041721_-	RND transporter	NA	NA	NA	NA	NA
AZW62508.1|4041717_4044825_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZW62509.1|4044821_4047890_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZW62510.1|4047886_4049137_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZW62511.1|4049317_4050079_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZW62512.1|4050111_4050762_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZW62513.1|4050764_4051604_-	prepilin peptidase	NA	NA	NA	NA	NA
AZW62514.1|4051844_4052588_+	hypothetical protein	NA	NA	NA	NA	NA
AZW62515.1|4052670_4053018_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZW62516.1|4053115_4053958_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZW62517.1|4054002_4054890_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZW62518.1|4054916_4055105_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZW62519.1|4055202_4056660_+	MFS transporter	NA	NA	NA	NA	NA
AZW62520.1|4056646_4058173_+	glycerol kinase	NA	NA	NA	NA	NA
AZW62521.1|4058191_4058659_-	hypothetical protein	NA	NA	NA	NA	NA
AZW62522.1|4058658_4059681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW62523.1|4059801_4060542_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZW62524.1|4060596_4061697_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW62525.1|4061698_4062889_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW62526.1|4063008_4064025_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZW62527.1|4064343_4065015_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZW62528.1|4065011_4065920_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW62529.1|4066131_4066779_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZW62530.1|4070630_4071707_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZW62531.1|4071717_4072527_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW62532.1|4072616_4073390_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW62533.1|4073572_4074523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
