The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	0	70443	4107445	protease,transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
AZW84293.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZW84294.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZW84295.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZW84296.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW84297.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZW84298.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZW84299.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZW84300.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZW84301.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZW84302.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZW84303.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZW84304.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZW84305.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZW84306.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZW87669.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZW84307.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84308.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZW84309.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW84310.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84311.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZW84312.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84313.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZW84314.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZW87670.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84315.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW84316.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW84317.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84318.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZW84319.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZW84320.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW84321.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZW84322.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW84323.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZW84324.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZW84325.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZW84326.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZW84327.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84328.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84329.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW84330.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84331.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZW84332.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZW84333.1|51133_52390_+	MFS transporter	NA	NA	NA	NA	NA
AZW84334.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZW84335.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZW84336.1|54976_55666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW84337.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW84338.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW84339.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84340.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW84341.1|60473_60893_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW84342.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84343.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84344.1|63472_64054_-|protease	protease	protease	NA	NA	NA	NA
AZW84345.1|64066_64384_-	ferredoxin	NA	NA	NA	NA	NA
AZW84346.1|64487_65546_-	oxidoreductase	NA	NA	NA	NA	NA
AZW84347.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW84348.1|67481_68663_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84349.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84350.1|70128_70443_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	77633	136107	4107445	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
AZW84356.1|77633_78584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87672.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84357.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZW84358.1|82821_83526_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZW84359.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW84360.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
AZW84361.1|85480_86713_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZW84362.1|86730_87990_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZW84363.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZW84364.1|89109_90210_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZW84365.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW84366.1|90792_91845_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZW84367.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZW84368.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZW84369.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84370.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZW84371.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZW84372.1|96202_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW84373.1|97338_98178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZW84374.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84375.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW84376.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZW84377.1|101787_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZW84378.1|102807_103083_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZW84379.1|103090_103753_+	octanoyltransferase	NA	NA	NA	NA	NA
AZW84380.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
AZW84381.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZW84382.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZW84383.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZW84384.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84385.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW84386.1|110551_111181_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZW84387.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW84388.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW87673.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZW84389.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87674.1|114943_115960_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW84390.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW84391.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW84392.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW84393.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZW84394.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
AZW84395.1|121121_122072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84396.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AZW84397.1|123072_123906_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW87675.1|124742_125753_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW87676.1|125749_126139_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87677.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
AZW84398.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZW84399.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84400.1|131149_132589_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AZW84401.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AZW84402.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84403.1|135156_136107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	164892	225403	4107445	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZW84426.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84427.1|167286_168189_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84428.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
AZW84429.1|169126_170509_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZW84430.1|170542_171172_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZW84431.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZW84432.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87680.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
AZW84433.1|174300_175251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84434.1|176366_176894_+	lipoprotein	NA	NA	NA	NA	NA
AZW84435.1|176985_177801_+	lipoprotein	NA	NA	NA	NA	NA
AZW84436.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW84437.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZW84438.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84439.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZW84440.1|182424_184329_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZW84441.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZW84442.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZW84443.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AZW84444.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZW87681.1|189529_189976_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZW84445.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84446.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZW84447.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW84448.1|194404_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84449.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZW84450.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW84451.1|197377_198478_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZW84452.1|198559_198934_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZW84453.1|198993_201858_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZW84454.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84455.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
AZW84456.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84457.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84458.1|206741_207065_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZW84459.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
AZW84460.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZW84461.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
AZW84462.1|209362_209638_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZW84463.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW84464.1|210338_211025_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW87682.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84465.1|212056_212782_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW84466.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZW84467.1|214274_215207_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW84468.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZW84469.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZW84470.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZW84471.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZW84472.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZW84473.1|224452_225403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	233334	287971	4107445	protease,transposase,tRNA	Bacillus_phage(25.0%)	49	NA	NA
AZW84480.1|233334_234285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84481.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84482.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84483.1|236367_237165_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW84484.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZW84485.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84486.1|240333_241377_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW84487.1|241547_243650_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84488.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84489.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZW84490.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZW84491.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZW84492.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZW84493.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZW84494.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZW84495.1|251621_253511_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZW84496.1|253597_254236_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87683.1|254378_255623_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZW84497.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZW84498.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZW84499.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
AZW84500.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZW84501.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84502.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW84503.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
AZW84504.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84505.1|265571_266522_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84506.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84507.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW84508.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZW84509.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZW84510.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZW84511.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZW84512.1|274098_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZW84513.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW84514.1|277138_278089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84515.1|278187_279138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84516.1|279124_279340_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84517.1|279415_279577_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZW84518.1|279584_279725_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84519.1|280243_280693_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZW84520.1|280702_281314_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW84521.1|281472_282327_-	cytochrome c1	NA	NA	NA	NA	NA
AZW84522.1|282346_283729_-	cytochrome b	NA	NA	NA	NA	NA
AZW84523.1|283793_284435_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZW84524.1|284574_285033_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZW84525.1|285057_285834_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZW87684.1|285887_287024_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZW84526.1|287020_287971_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	391904	449413	4107445	transposase	Orpheovirus(14.29%)	50	NA	NA
AZW84625.1|391904_392855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84626.1|392991_393909_+	reductase	NA	NA	NA	NA	NA
AZW84627.1|393905_394154_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZW84628.1|394150_395356_+	CoA transferase	NA	NA	NA	NA	NA
AZW84629.1|395428_396424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84630.1|396446_397667_-	CoA transferase	NA	NA	NA	NA	NA
AZW84631.1|397663_398308_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84632.1|400038_400848_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87690.1|401065_402106_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZW84633.1|402204_403188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84634.1|403114_403816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84635.1|403864_404635_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW84636.1|404631_405873_-	CoA transferase	NA	NA	NA	NA	NA
AZW84637.1|405977_407684_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW84638.1|407680_408577_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84639.1|408617_410207_-	sulfurtransferase	NA	NA	NA	NA	NA
AZW84640.1|410256_411249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84641.1|411317_411917_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87691.1|412377_413355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84642.1|413433_414384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84643.1|414472_415387_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW84644.1|415383_416043_+	LysE family translocator	NA	NA	NA	NA	NA
AZW84645.1|416132_417056_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZW84646.1|417061_417517_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84647.1|417513_418617_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZW87692.1|418536_418845_+	GtrA family protein	NA	NA	NA	NA	NA
AZW84648.1|418804_420424_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZW84649.1|420420_421479_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZW84650.1|421608_422103_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW84651.1|422195_423173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84652.1|423368_424574_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZW84653.1|424570_426082_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW87693.1|426097_427411_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZW84654.1|427601_427781_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84655.1|428190_428925_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZW84656.1|431369_432320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84657.1|432451_432850_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZW84658.1|433260_433731_-	universal stress protein	NA	NA	NA	NA	NA
AZW84659.1|433819_434164_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZW84660.1|434263_435664_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW84661.1|437452_437971_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZW84662.1|438081_438837_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZW84663.1|439032_440265_+	CoA transferase	NA	NA	NA	NA	NA
AZW84664.1|440257_441043_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW84665.1|441109_442081_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84666.1|442091_443069_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84667.1|443194_444367_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW84668.1|444393_445422_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW84669.1|445487_446681_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW84670.1|448462_449413_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	621849	723362	4107445	tail,transposase,terminase,tRNA	Bacillus_phage(10.71%)	111	NA	NA
AZW84822.1|621849_622800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84823.1|623498_623882_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84824.1|623939_624542_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZW87699.1|624559_624961_-	DoxX family protein	NA	NA	NA	NA	NA
AZW87700.1|625094_625988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84825.1|625984_626566_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZW84826.1|627360_628095_+	arginyltransferase	NA	NA	NA	NA	NA
AZW84827.1|628135_629185_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZW84828.1|629332_629911_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZW84829.1|630297_631275_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZW84830.1|631368_635763_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZW84831.1|635963_636812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84832.1|636970_637783_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZW84833.1|637838_638789_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84834.1|638887_639688_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84835.1|639749_640133_+	thioredoxin	NA	NA	NA	NA	NA
AZW84836.1|640144_641578_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZW84837.1|641784_642114_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZW87701.1|642116_642785_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW84838.1|643048_643969_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZW84839.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZW84840.1|644250_644673_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZW84841.1|644689_645790_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW84842.1|645886_647404_-	peptidase	NA	NA	NA	NA	NA
AZW84843.1|647479_648319_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZW84844.1|648340_649222_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZW84845.1|649303_650398_-	porin	NA	NA	NA	NA	NA
AZW84846.1|650691_651642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87702.1|651716_652658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84847.1|652741_653101_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84848.1|653482_654520_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84849.1|654836_656177_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZW84850.1|656186_656639_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84851.1|656735_657917_+	monooxygenase	NA	NA	NA	NA	NA
AZW84852.1|657976_659008_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZW84853.1|659048_659288_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW84854.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZW84855.1|660946_661495_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZW84856.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZW84857.1|662166_663078_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZW84858.1|663151_664120_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZW84859.1|664242_665316_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZW84860.1|665320_667141_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZW84861.1|667217_668168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84862.1|668256_668592_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZW84863.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZW84864.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
AZW84865.1|670885_671641_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87703.1|671609_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW84866.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW84867.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZW84868.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZW84869.1|674954_676697_+	sulfite reductase	NA	NA	NA	NA	NA
AZW84870.1|676689_677214_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZW84871.1|677253_678048_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW84872.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84873.1|679387_680338_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84874.1|680589_680802_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87704.1|680867_681479_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZW84875.1|681958_682279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84876.1|682271_682970_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84877.1|682984_683206_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84878.1|683223_684174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87705.1|684849_685299_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZW84879.1|685285_686563_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZW84880.1|686565_687984_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZW87706.1|688012_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZW84881.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZW84882.1|689438_690041_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZW84883.1|690469_691420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84884.1|691437_692085_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZW84885.1|692094_692346_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84886.1|692408_692891_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZW84887.1|692892_693093_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84888.1|693092_693488_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZW84889.1|693484_693883_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZW84890.1|693879_694302_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84891.1|694309_694810_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZW84892.1|695064_695583_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZW84893.1|695592_695922_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZW84894.1|695939_696230_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZW84895.1|697815_698766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84896.1|699926_700286_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84897.1|700353_700887_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZW84898.1|700883_701273_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZW84899.1|701265_705222_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZW84900.1|705226_705643_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84901.1|705861_706125_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZW84902.1|706124_706937_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84903.1|706941_707184_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84904.1|707162_707714_+	lysozyme	NA	NA	NA	NA	NA
AZW84905.1|707695_708229_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZW84906.1|708225_708507_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84907.1|708849_709050_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84908.1|709056_709728_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZW84909.1|710083_710770_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW84910.1|710750_711323_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW84911.1|711388_713119_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZW84912.1|713171_713600_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW84913.1|713602_714283_+	protein TolQ	NA	NA	NA	NA	NA
AZW84914.1|714282_714741_+	protein TolR	NA	NA	NA	NA	NA
AZW84915.1|714777_715752_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZW84916.1|715768_717085_+	protein TolB	NA	NA	NA	NA	NA
AZW84917.1|717116_717614_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZW84918.1|717700_718390_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZW84919.1|718389_719439_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW84920.1|719435_720230_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZW84921.1|720398_720749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84922.1|720724_721282_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW84923.1|722206_722425_+	hypothetical protein	NA	NA	NA	NA	NA
AZW84924.1|722411_723362_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	738049	766367	4107445	transposase	Planktothrix_phage(100.0%)	24	NA	NA
AZW84934.1|738049_739000_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84935.1|739098_740049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84936.1|740208_741081_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
AZW84937.1|741421_741640_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
AZW84938.1|741679_743059_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZW84939.1|743100_744498_-	amidase	NA	NA	NA	NA	NA
AZW84940.1|744537_746190_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
AZW84941.1|746193_747078_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW84942.1|747077_748019_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW84943.1|748097_749717_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW84944.1|749883_750699_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84945.1|750766_751336_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW84946.1|751336_752287_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84947.1|752941_754039_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZW84948.1|754072_755338_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZW84949.1|755495_756446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84950.1|756689_757280_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZW87708.1|757295_759740_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW84951.1|759859_760831_-	hypothetical protein	NA	NA	NA	NA	NA
AZW84952.1|760962_761487_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZW84953.1|761446_762397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW84954.1|762618_764814_-	DNA methylase	NA	NA	NA	NA	NA
AZW84955.1|764886_765294_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW84956.1|765416_766367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	857245	906509	4107445	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZW85029.1|857245_858196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87711.1|858168_858768_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85030.1|858769_859204_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW85031.1|859200_859635_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85032.1|859618_860422_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZW85033.1|860438_861254_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZW85034.1|861250_862066_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZW85035.1|862212_862914_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85036.1|862941_864900_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZW85037.1|864982_865933_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85038.1|866153_866822_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW85039.1|866945_868052_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW85040.1|868064_871178_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZW85041.1|871174_872668_+	RND transporter	NA	NA	NA	NA	NA
AZW85042.1|872682_873354_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW85043.1|873397_873892_-	azurin	NA	NA	NA	NA	NA
AZW85044.1|874032_874680_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW87712.1|874783_876832_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW85045.1|876828_878841_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW85046.1|878866_880201_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW87713.1|880309_881302_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW85047.1|881368_883453_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZW85048.1|883477_884449_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW85049.1|884577_885579_-	peptidase M14	NA	NA	NA	NA	NA
AZW85050.1|885612_886854_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW85051.1|886934_887858_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZW85052.1|887935_888760_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW87714.1|888956_889973_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW85053.1|890169_891153_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW85054.1|892751_894140_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW85055.1|894170_895160_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW85056.1|895270_896503_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW85057.1|896784_897585_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85058.1|897607_899839_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZW85059.1|900626_901073_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZW85060.1|901094_901841_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZW85061.1|901984_902962_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZW85062.1|903595_904207_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZW85063.1|904200_905418_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZW85064.1|905558_906509_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	916121	981061	4107445	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZW85073.1|916121_917072_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85074.1|917068_918919_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZW85075.1|919299_919959_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZW85076.1|920046_920199_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85077.1|920307_920475_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85078.1|920486_921167_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZW85079.1|921448_922165_+	flagellar brake protein	NA	NA	NA	NA	NA
AZW85080.1|922179_923481_-	phospholipase	NA	NA	NA	NA	NA
AZW85081.1|925625_928514_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZW85082.1|928737_930090_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW85083.1|930118_930640_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZW85084.1|930636_932091_+	carboxylase	NA	NA	NA	NA	NA
AZW85085.1|932125_932374_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85086.1|932479_933355_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85087.1|933380_934436_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85088.1|934448_935240_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85089.1|935272_936643_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZW85090.1|937819_938770_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85091.1|938822_939044_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85092.1|939203_939416_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85093.1|939535_940654_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW85094.1|940750_940966_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85095.1|941159_941411_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85096.1|941523_942474_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85097.1|942470_942854_-	ferredoxin	NA	NA	NA	NA	NA
AZW85098.1|942908_944726_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZW87716.1|944872_945700_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZW85099.1|945745_946726_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW85100.1|946722_946935_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85101.1|946931_948113_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZW85102.1|948276_949011_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZW85103.1|949012_951625_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZW85104.1|951760_953674_-	S9 family peptidase	NA	NA	NA	NA	NA
AZW85105.1|954289_954700_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW85106.1|954797_955883_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZW85107.1|955981_956932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85108.1|956928_957903_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW85109.1|958027_958939_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZW87717.1|959215_959608_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZW85110.1|959737_960688_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85111.1|960717_960900_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZW85112.1|960938_961196_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85113.1|961672_962854_-	MFS transporter	NA	NA	NA	NA	NA
AZW85114.1|963069_963747_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW85115.1|963743_964517_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZW85116.1|964594_965176_-	OmpA family protein	NA	NA	NA	NA	NA
AZW85117.1|965546_968228_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZW85118.1|968227_969361_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZW85119.1|969353_970439_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZW85120.1|970525_971425_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZW85121.1|971421_972750_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZW85122.1|972764_973436_+	cytidylate kinase	NA	NA	NA	NA	NA
AZW85123.1|973608_975339_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZW85124.1|975340_975700_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZW85125.1|975891_976206_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZW85126.1|976248_977469_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZW85127.1|977465_978407_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZW85128.1|978403_979393_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZW85129.1|979427_980012_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZW85130.1|980110_981061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	1000466	1063617	4107445	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZW85145.1|1000466_1001417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85146.1|1001521_1002571_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZW87719.1|1002708_1003725_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW85147.1|1005233_1005806_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZW85148.1|1005865_1006597_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZW87720.1|1006648_1007566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85149.1|1008373_1011553_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW85150.1|1011549_1012932_+	multidrug transporter	NA	NA	NA	NA	NA
AZW85151.1|1013001_1013253_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZW85152.1|1013398_1014049_-	SCO family protein	NA	NA	NA	NA	NA
AZW85153.1|1014199_1016314_-	M3 family peptidase	NA	NA	NA	NA	NA
AZW85154.1|1016389_1017241_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZW85155.1|1017237_1017864_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW85156.1|1017860_1019615_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZW85157.1|1019907_1022613_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZW85158.1|1022625_1024287_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZW85159.1|1024299_1026090_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZW85160.1|1026311_1027487_-	flagellin FliC	NA	NA	NA	NA	NA
AZW85161.1|1027529_1028480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85162.1|1028578_1029319_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZW85163.1|1029513_1031550_+	transketolase	NA	NA	NA	NA	NA
AZW85164.1|1031567_1032578_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZW85165.1|1032695_1033889_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZW85166.1|1033918_1034692_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW85167.1|1034688_1035879_-	acetate kinase	NA	NA	NA	NA	NA
AZW85168.1|1035904_1036843_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZW87721.1|1036839_1039188_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZW85169.1|1039342_1040050_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW85170.1|1040087_1041221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85171.1|1041497_1042046_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZW85172.1|1042064_1042550_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW85173.1|1042727_1043666_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZW85174.1|1043668_1043986_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85175.1|1044031_1044976_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85176.1|1046656_1047307_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZW85177.1|1047360_1047696_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85178.1|1047692_1048553_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZW85179.1|1048569_1048851_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85180.1|1048924_1049188_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZW85181.1|1049431_1050382_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85182.1|1050680_1051418_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZW85183.1|1051853_1052177_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZW85184.1|1052211_1052772_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZW85185.1|1052892_1053768_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZW85186.1|1053780_1054728_+	motility protein MotB	NA	NA	NA	NA	NA
AZW85187.1|1054829_1055123_+	response regulator	NA	NA	NA	NA	NA
AZW85188.1|1055149_1057207_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZW85189.1|1057221_1057722_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZW85190.1|1057795_1059502_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZW85191.1|1060365_1061418_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZW85192.1|1061470_1061860_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZW85193.1|1061868_1062501_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZW87722.1|1062600_1063617_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	1069601	1137763	4107445	transposase,holin,tRNA	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
AZW85198.1|1069601_1071029_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZW87724.1|1071966_1072983_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW85199.1|1073315_1074251_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZW85200.1|1074300_1076181_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZW85201.1|1076247_1076592_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZW85202.1|1076736_1077873_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZW85203.1|1077869_1078943_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZW85204.1|1079100_1080537_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZW87725.1|1080627_1081269_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW87726.1|1081604_1082621_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW87727.1|1085767_1087189_-	siroheme synthase	NA	NA	NA	NA	NA
AZW85205.1|1087452_1088169_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85206.1|1088253_1088571_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZW85207.1|1088611_1089025_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW85208.1|1089026_1089386_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85209.1|1089428_1090973_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZW85210.1|1091056_1091887_+	transglycosylase	NA	NA	NA	NA	NA
AZW85211.1|1091921_1093076_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZW85212.1|1093118_1093991_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85213.1|1094107_1096396_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW85214.1|1097602_1098067_+	barstar family protein 2	NA	NA	NA	NA	NA
AZW85215.1|1098093_1099044_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87728.1|1099411_1100188_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZW85216.1|1100232_1101090_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZW85217.1|1101111_1102128_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZW85218.1|1102262_1103303_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZW85219.1|1103497_1105579_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZW85220.1|1105814_1107308_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZW85221.1|1107538_1108333_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW85222.1|1108553_1109912_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZW85223.1|1109908_1110751_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZW85224.1|1110769_1112656_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZW85225.1|1112893_1113526_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZW85226.1|1113544_1114147_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85227.1|1114298_1115249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85228.1|1116051_1116852_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85229.1|1116895_1117882_-	homoserine kinase	NA	NA	NA	NA	NA
AZW85230.1|1118021_1119035_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZW85231.1|1119031_1119982_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85232.1|1120094_1120553_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZW85233.1|1120589_1121903_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85234.1|1121920_1122292_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZW85235.1|1122288_1123752_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZW85236.1|1123844_1124621_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW85237.1|1124602_1127482_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZW85238.1|1127664_1128615_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85239.1|1128782_1129607_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZW85240.1|1129606_1130485_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW85241.1|1131389_1132505_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85242.1|1132512_1133328_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZW85243.1|1133324_1135190_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZW85244.1|1135268_1135901_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85245.1|1135897_1136200_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85246.1|1136242_1137763_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	1320052	1388539	4107445	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZW85389.1|1320052_1321003_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85390.1|1321771_1322410_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW87738.1|1323299_1323746_+	glutamate racemase	NA	NA	NA	NA	NA
AZW85391.1|1323827_1324529_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZW85392.1|1324529_1325297_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZW85393.1|1325293_1326532_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZW85394.1|1326531_1327458_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZW85395.1|1327560_1328676_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85396.1|1328691_1329642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85397.1|1329995_1330577_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZW85398.1|1330573_1331407_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZW87739.1|1331617_1332931_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZW85399.1|1333107_1333989_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZW85400.1|1334008_1334860_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZW85401.1|1334912_1336001_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZW85402.1|1336111_1337239_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW87740.1|1337473_1338085_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW85403.1|1338183_1339134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85404.1|1339355_1339733_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZW87741.1|1339880_1340378_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZW85405.1|1340374_1340902_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZW85406.1|1341035_1341851_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85407.1|1341863_1343045_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW85408.1|1343092_1343986_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZW87742.1|1344112_1344583_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85409.1|1344708_1345536_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZW85410.1|1345564_1346341_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZW85411.1|1346337_1346631_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZW85412.1|1346627_1347092_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW85413.1|1347103_1347889_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZW85414.1|1347914_1348415_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZW85415.1|1348497_1349676_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZW85416.1|1351303_1351639_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZW85417.1|1351826_1353275_+	CoA transferase	NA	NA	NA	NA	NA
AZW87743.1|1353332_1353677_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZW85418.1|1353783_1354323_-	peroxiredoxin	NA	NA	NA	NA	NA
AZW85419.1|1354415_1355366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85420.1|1355352_1355835_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85421.1|1356104_1356536_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85422.1|1356717_1357122_-	DoxX family protein	NA	NA	NA	NA	NA
AZW85423.1|1358358_1358682_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85424.1|1358684_1359572_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZW85425.1|1359604_1360030_-	universal stress protein	NA	NA	NA	NA	NA
AZW85426.1|1360101_1360455_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85427.1|1360694_1361201_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85428.1|1361239_1362571_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZW85429.1|1362630_1363446_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZW85430.1|1363442_1364297_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZW87744.1|1367359_1369903_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZW85431.1|1371269_1373024_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZW85432.1|1373020_1375141_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZW85433.1|1375145_1377341_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZW87745.1|1377337_1380679_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZW85434.1|1383481_1384432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85435.1|1384497_1384677_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87746.1|1384793_1385516_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW85436.1|1385535_1386681_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZW85437.1|1387588_1388539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	1449030	1504518	4107445	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZW85483.1|1449030_1449981_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85484.1|1451182_1451629_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZW85485.1|1451621_1453097_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZW85486.1|1453093_1453849_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZW85487.1|1453841_1454852_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZW85488.1|1454841_1456518_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZW85489.1|1456830_1457163_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZW85490.1|1457176_1457572_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85491.1|1457581_1457908_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZW85492.1|1457904_1458231_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW85493.1|1458157_1459180_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW85494.1|1459176_1459557_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZW85495.1|1459574_1460003_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZW85496.1|1460010_1461384_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZW87752.1|1461524_1461902_-	flagellar protein	NA	NA	NA	NA	NA
AZW85497.1|1462164_1463472_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZW85498.1|1463532_1464363_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW85499.1|1464359_1464848_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZW85500.1|1464889_1466410_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZW87753.1|1466453_1466930_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW85501.1|1467733_1470331_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZW85502.1|1470360_1471182_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZW85503.1|1471908_1472658_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZW85504.1|1472790_1473720_+	elongation factor Ts	NA	NA	NA	NA	NA
AZW85505.1|1473817_1474534_+	UMP kinase	NA	NA	NA	NA	NA
AZW85506.1|1474548_1475109_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZW85507.1|1475146_1476040_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZW85508.1|1476059_1476917_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZW85509.1|1476913_1478113_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZW85510.1|1478152_1479487_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZW85511.1|1479539_1481876_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZW87754.1|1482001_1482565_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZW85512.1|1482573_1483665_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZW85513.1|1483736_1484192_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZW85514.1|1484192_1484987_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZW85515.1|1484983_1486165_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZW85516.1|1486151_1486757_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZW85517.1|1486753_1487527_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZW85518.1|1487538_1488366_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZW85519.1|1488527_1490891_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZW85520.1|1490958_1491678_-	GMP synthase	NA	NA	NA	NA	NA
AZW85521.1|1491801_1492227_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZW85522.1|1492261_1493212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85523.1|1493329_1494256_+	paraslipin	NA	NA	NA	NA	NA
AZW85524.1|1494321_1495479_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZW85525.1|1495459_1495927_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZW85526.1|1496074_1497025_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85527.1|1497041_1497476_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZW85528.1|1497465_1497816_+	RnfH family protein	NA	NA	NA	NA	NA
AZW85529.1|1498012_1499167_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW85530.1|1499163_1500336_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW85531.1|1500383_1501277_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW85532.1|1501322_1501760_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW85533.1|1501819_1502509_+	VIT family protein	NA	NA	NA	NA	NA
AZW85534.1|1502518_1503469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85535.1|1503567_1504518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	1543841	1601923	4107445	protease,transposase,tRNA	Planktothrix_phage(15.38%)	60	NA	NA
AZW85568.1|1543841_1544654_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZW85569.1|1544798_1545893_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85570.1|1546104_1546734_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85571.1|1546736_1548404_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW85572.1|1548418_1549075_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZW85573.1|1549554_1550505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85574.1|1550531_1551305_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZW85575.1|1551316_1552558_+	MFS transporter	NA	NA	NA	NA	NA
AZW85576.1|1554339_1555290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85577.1|1555321_1556419_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZW85578.1|1556415_1557366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85579.1|1557787_1558180_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85580.1|1558185_1558962_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW85581.1|1559349_1561299_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZW85582.1|1561319_1561865_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZW85583.1|1562001_1562958_+	glutathione synthetase	NA	NA	NA	NA	NA
AZW85584.1|1562968_1563367_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZW85585.1|1563482_1563752_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZW85586.1|1563873_1565568_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZW85587.1|1565732_1565957_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85588.1|1566555_1567506_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZW85589.1|1567547_1568708_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85590.1|1568868_1569789_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZW85591.1|1569801_1570443_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZW85592.1|1570439_1571111_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZW85593.1|1571107_1571878_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZW85594.1|1571976_1572927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85595.1|1573143_1573548_-	GFA family protein	NA	NA	NA	NA	NA
AZW85596.1|1573621_1574812_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZW85597.1|1574845_1575172_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZW85598.1|1575194_1575710_-	transporter	NA	NA	NA	NA	NA
AZW85599.1|1575768_1576995_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZW85600.1|1577172_1578303_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW85601.1|1578537_1579119_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZW85602.1|1579255_1580320_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZW85603.1|1580404_1580851_-	GFA family protein	NA	NA	NA	NA	NA
AZW85604.1|1581075_1581957_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZW85605.1|1582011_1582263_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZW85606.1|1582265_1582667_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZW85607.1|1582686_1582923_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85608.1|1582930_1583410_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW85609.1|1583595_1584075_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZW85610.1|1584077_1585268_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZW85611.1|1585272_1586325_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZW85612.1|1586461_1587484_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZW85613.1|1587575_1588412_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85614.1|1588604_1589510_+	agmatinase	NA	NA	NA	NA	NA
AZW85615.1|1589536_1590328_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85616.1|1590350_1591043_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW85617.1|1591064_1591817_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZW85618.1|1591945_1593505_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZW85619.1|1593536_1594082_+	acyl dehydratase	NA	NA	NA	NA	NA
AZW85620.1|1594219_1595476_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW85621.1|1595492_1597187_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZW85622.1|1597344_1598232_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZW85623.1|1598269_1599202_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZW87756.1|1599215_1599704_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZW85624.1|1599821_1600400_+|protease	protease	protease	NA	NA	NA	NA
AZW85625.1|1600472_1600874_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZW85626.1|1600972_1601923_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	1657127	1728281	4107445	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZW85673.1|1657127_1658078_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85674.1|1658099_1659320_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZW85675.1|1659505_1660918_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZW85676.1|1660981_1662049_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZW85677.1|1662045_1663536_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZW87759.1|1663545_1664490_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85678.1|1664649_1665348_+	pirin family protein	NA	NA	NA	NA	NA
AZW85679.1|1665425_1666331_+	pirin family protein	NA	NA	NA	NA	NA
AZW85680.1|1666350_1667301_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85681.1|1667399_1668194_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZW85682.1|1668198_1669869_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW85683.1|1669992_1671042_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85684.1|1671363_1672140_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZW85685.1|1672204_1673107_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85686.1|1674400_1675204_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZW85687.1|1677897_1678284_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZW85688.1|1678299_1680390_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZW85689.1|1680441_1681395_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZW87760.1|1681409_1682297_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85690.1|1682434_1683961_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZW87761.1|1684059_1684560_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZW85691.1|1684883_1686839_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW85692.1|1687006_1689091_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85693.1|1689117_1689903_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZW85694.1|1690758_1691529_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZW85695.1|1691528_1692269_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW85696.1|1692310_1693480_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZW85697.1|1693511_1695596_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZW85698.1|1695592_1696483_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW85699.1|1696479_1697577_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW85700.1|1697599_1698889_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZW85701.1|1698900_1699926_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZW85702.1|1699922_1701980_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW85703.1|1701993_1703169_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZW85704.1|1703250_1704201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85705.1|1704259_1705033_+	oxidoreductase	NA	NA	NA	NA	NA
AZW85706.1|1705025_1706582_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZW85707.1|1706578_1707529_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85708.1|1708855_1709458_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85709.1|1709697_1710399_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW85710.1|1710392_1711175_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZW85711.1|1711359_1712310_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85712.1|1712408_1713146_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZW85713.1|1713335_1714094_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW85714.1|1714140_1715130_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW85715.1|1715307_1716276_-	transporter	NA	NA	NA	NA	NA
AZW85716.1|1717815_1718784_+	AAA family ATPase	NA	NA	NA	NA	NA
AZW85717.1|1718792_1719734_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZW85718.1|1720207_1721218_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87762.1|1721208_1722723_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZW85719.1|1722719_1724066_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87763.1|1724068_1725103_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZW85720.1|1725152_1726778_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZW85721.1|1727330_1728281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	1749072	1810420	4107445	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZW85735.1|1749072_1750023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87769.1|1750316_1751039_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZW85736.1|1751477_1752665_-	MFS transporter	NA	NA	NA	NA	NA
AZW85737.1|1752668_1753049_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85738.1|1754768_1755740_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW85739.1|1755753_1756467_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW85740.1|1756471_1757389_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85741.1|1757495_1757792_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85742.1|1757890_1758841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85743.1|1759999_1762933_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZW85744.1|1762932_1763277_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZW85745.1|1763273_1764902_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZW85746.1|1764898_1765378_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZW85747.1|1765374_1765659_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZW85748.1|1765655_1765982_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZW85749.1|1766137_1767088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85750.1|1767131_1767674_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85751.1|1767771_1768620_+	hydrolase	NA	NA	NA	NA	NA
AZW85752.1|1768612_1769119_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZW85753.1|1769115_1770117_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZW85754.1|1770129_1770924_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW85755.1|1770972_1772874_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW85756.1|1772870_1773494_-	hypothetical protein	NA	NA	NA	NA	NA
AZW85757.1|1773620_1774745_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85758.1|1775062_1776730_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZW85759.1|1776885_1777662_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZW85760.1|1777746_1778745_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85761.1|1778741_1779515_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW85762.1|1780499_1781450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85763.1|1781473_1781938_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZW85764.1|1782084_1783293_+	flavohemoprotein	NA	NA	NA	NA	NA
AZW85765.1|1783303_1783774_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW85766.1|1783892_1785182_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW85767.1|1787922_1788873_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW85768.1|1788971_1789988_-	folate-binding protein	NA	NA	NA	NA	NA
AZW85769.1|1790154_1791201_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZW85770.1|1791197_1791824_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZW85771.1|1791820_1792873_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZW85772.1|1792922_1793693_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZW85773.1|1793743_1794580_+	hypothetical protein	NA	NA	NA	NA	NA
AZW85774.1|1794775_1795516_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85775.1|1795590_1796334_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85776.1|1796995_1797769_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZW85777.1|1798906_1800196_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZW85778.1|1801806_1803054_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW85779.1|1803063_1804773_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZW85780.1|1804769_1805708_-	CoA ester lyase	NA	NA	NA	NA	NA
AZW85781.1|1805704_1806988_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW85782.1|1806991_1807474_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW85783.1|1807474_1808461_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW85784.1|1808633_1809353_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW85785.1|1809469_1810420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	2200777	2256013	4107445	protease,transposase	Lake_Baikal_phage(25.0%)	50	NA	NA
AZW86086.1|2200777_2201728_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86087.1|2201928_2202738_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW86088.1|2202862_2203813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86089.1|2203809_2204703_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZW86090.1|2204827_2205022_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZW86091.1|2205021_2205363_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZW86092.1|2205372_2207235_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZW86093.1|2207364_2207877_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZW86094.1|2207879_2208203_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZW86095.1|2208204_2208615_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZW86096.1|2208652_2209864_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZW86097.1|2209881_2210394_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZW86098.1|2210609_2211101_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZW86099.1|2211353_2213390_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZW86100.1|2213467_2214670_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW86101.1|2214720_2215449_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZW86102.1|2217006_2217957_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86103.1|2218527_2218740_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86104.1|2218757_2219489_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86105.1|2219523_2220165_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW86106.1|2220157_2220874_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW86107.1|2223038_2223815_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW86108.1|2223836_2224994_-	thiolase	NA	NA	NA	NA	NA
AZW86109.1|2224990_2225422_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86110.1|2225418_2226222_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW86111.1|2226235_2226691_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW86112.1|2226703_2227675_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW86113.1|2227740_2228964_-	CoA transferase	NA	NA	NA	NA	NA
AZW86114.1|2229191_2230142_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86115.1|2230265_2232719_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZW86116.1|2232907_2234212_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZW86117.1|2234316_2234970_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZW86118.1|2234972_2236283_-	trigger factor	NA	NA	NA	NA	NA
AZW86119.1|2236461_2237040_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZW86120.1|2237151_2237352_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZW86121.1|2237697_2238264_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZW86122.1|2238347_2238551_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZW86123.1|2238857_2239178_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86124.1|2239219_2239501_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86125.1|2239575_2240832_-	autotransporter Phg	NA	NA	NA	NA	NA
AZW86126.1|2241214_2241544_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW86127.1|2243114_2243936_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZW86128.1|2243935_2245075_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZW86129.1|2245081_2245978_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZW86130.1|2245974_2247900_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZW86131.1|2248259_2250872_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW86132.1|2250924_2253225_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZW86133.1|2253221_2254430_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZW86134.1|2254691_2255066_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86135.1|2255062_2256013_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	2259120	2313390	4107445	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
AZW86137.1|2259120_2261982_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZW86138.1|2261984_2262491_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZW86139.1|2262595_2263804_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZW86140.1|2263805_2264744_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86141.1|2264905_2265379_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW86142.1|2265375_2266326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86143.1|2266312_2266492_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86144.1|2266436_2266877_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZW86145.1|2267005_2268235_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZW86146.1|2268273_2269095_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZW86147.1|2269148_2270300_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW86148.1|2270391_2270880_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZW86149.1|2273406_2275980_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW86150.1|2276050_2278624_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW86151.1|2278889_2279090_+	CsbD family protein	NA	NA	NA	NA	NA
AZW86152.1|2279121_2279283_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZW86153.1|2279340_2279679_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZW86154.1|2279827_2280778_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86155.1|2280876_2281827_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86156.1|2281925_2282645_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZW87790.1|2282721_2283270_+	arylesterase	NA	NA	NA	NA	NA
AZW86157.1|2283251_2285267_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZW86158.1|2285449_2286199_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZW86159.1|2286211_2287075_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZW86160.1|2287078_2288494_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZW86161.1|2288627_2289356_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZW86162.1|2289494_2289695_-	copper chaperone	NA	NA	NA	NA	NA
AZW86163.1|2289870_2290269_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZW86164.1|2290292_2291693_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZW87791.1|2291811_2292564_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86165.1|2292852_2293530_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86166.1|2293556_2294336_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZW86167.1|2294332_2295217_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZW87792.1|2295234_2295924_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZW86168.1|2295998_2296757_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZW86169.1|2296882_2297530_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW87793.1|2297797_2298814_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW86170.1|2298911_2299952_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZW86171.1|2300086_2301379_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZW86172.1|2302738_2303122_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZW86173.1|2303139_2303727_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZW86174.1|2303764_2304715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86175.1|2304813_2305374_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZW86176.1|2305370_2305916_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86177.1|2306111_2307140_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86178.1|2307180_2308521_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZW86179.1|2308629_2309634_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86180.1|2309740_2312341_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZW86181.1|2312439_2313390_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	2352503	2416081	4107445	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
AZW86220.1|2352503_2353454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86221.1|2353755_2354232_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZW86222.1|2354855_2356493_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZW86223.1|2356523_2357837_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZW86224.1|2357970_2358288_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86225.1|2358388_2359711_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86226.1|2359707_2360658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86227.1|2360756_2361707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86228.1|2362236_2363259_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86229.1|2363287_2364118_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZW87798.1|2364134_2365832_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW86230.1|2365896_2366973_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZW86231.1|2367132_2367996_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW86232.1|2368026_2368596_+	phosphohydrolase	NA	NA	NA	NA	NA
AZW86233.1|2368612_2369464_-	sulfurtransferase	NA	NA	NA	NA	NA
AZW86234.1|2370521_2371403_+|protease	protease HtpX	protease	NA	NA	NA	NA
AZW86235.1|2371477_2372467_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZW86236.1|2372529_2373480_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW86237.1|2373542_2374400_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW86238.1|2374459_2374948_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86239.1|2376496_2377711_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW86240.1|2377707_2379294_+	multidrug resistance protein	NA	NA	NA	NA	NA
AZW86241.1|2379312_2380380_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZW86242.1|2380484_2382029_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZW86243.1|2382448_2384023_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86244.1|2384130_2385147_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW86245.1|2385143_2385983_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW86246.1|2385987_2387625_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZW86247.1|2387621_2388572_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86248.1|2388714_2389989_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZW86249.1|2389985_2390309_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW87799.1|2390381_2391395_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZW86250.1|2391414_2392677_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW86251.1|2392679_2393603_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW86252.1|2393599_2395093_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW86253.1|2395103_2396036_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZW86254.1|2396217_2397543_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZW86255.1|2397577_2398933_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZW86256.1|2398993_2400592_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZW86257.1|2400668_2401400_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW86258.1|2401434_2402808_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZW86259.1|2402823_2403735_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZW86260.1|2403725_2404319_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZW86261.1|2404380_2404767_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZW86262.1|2404778_2405249_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZW86263.1|2405260_2405884_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZW86264.1|2405904_2408652_-	autotransporter Vag8	NA	NA	NA	NA	NA
AZW86265.1|2414928_2415144_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86266.1|2415130_2416081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	2688067	2728735	4107445	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AZW86496.1|2688067_2689018_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86497.1|2689128_2689311_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86498.1|2689410_2690007_-	lipoprotein	NA	NA	NA	NA	NA
AZW86499.1|2690190_2691282_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86500.1|2691781_2692192_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86501.1|2692250_2692592_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZW86502.1|2692597_2695015_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW86503.1|2695027_2696050_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZW86504.1|2696124_2696484_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZW86505.1|2696499_2696697_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZW86506.1|2697032_2697983_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86507.1|2697969_2698158_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86508.1|2698177_2698627_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZW86509.1|2698623_2699574_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86510.1|2699684_2701133_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW86511.1|2701247_2701529_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86512.1|2701632_2702583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86513.1|2702827_2703541_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW86514.1|2703663_2703891_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW86515.1|2704185_2704824_-	DedA family protein	NA	NA	NA	NA	NA
AZW86516.1|2704896_2705967_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZW86517.1|2705963_2706914_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86518.1|2707329_2707854_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZW86519.1|2707857_2708127_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86520.1|2708325_2709387_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW86521.1|2709470_2711105_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZW86522.1|2711106_2711910_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW86523.1|2711938_2712898_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW86524.1|2712901_2714416_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86525.1|2714452_2715457_-	peptidase M20	NA	NA	NA	NA	NA
AZW86526.1|2715464_2715713_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86527.1|2715887_2716358_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZW86528.1|2716393_2717005_-	LysE family translocator	NA	NA	NA	NA	NA
AZW86529.1|2717035_2717659_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW86530.1|2717739_2719272_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW86531.1|2719306_2720548_-	MFS transporter	NA	NA	NA	NA	NA
AZW86532.1|2720591_2721623_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZW86533.1|2721619_2722789_-	amine oxidase	NA	NA	NA	NA	NA
AZW86534.1|2722782_2723463_-	anti-sigma factor	NA	NA	NA	NA	NA
AZW86535.1|2723624_2724467_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86536.1|2724629_2725601_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW86537.1|2725772_2726651_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW86538.1|2726673_2727744_-	FUSC family protein	NA	NA	NA	NA	NA
AZW86539.1|2727784_2728735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	2784199	2857069	4107445	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
AZW86582.1|2784199_2784616_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZW86583.1|2784726_2785359_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZW86584.1|2785387_2785831_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZW86585.1|2785852_2786944_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86586.1|2786998_2787799_-	aldolase	NA	NA	NA	NA	NA
AZW86587.1|2787934_2788555_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW86588.1|2788694_2789168_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86589.1|2790307_2791258_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86590.1|2791254_2798916_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZW86591.1|2799156_2803203_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZW86592.1|2803515_2804097_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW86593.1|2804093_2805392_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW86594.1|2805471_2806500_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW86595.1|2806423_2806774_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86596.1|2806760_2807711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86597.1|2807707_2808658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86598.1|2808974_2809580_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZW86599.1|2809633_2810947_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZW86600.1|2811021_2811492_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZW86601.1|2811491_2812280_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZW86602.1|2812290_2813943_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZW86603.1|2814030_2814981_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87815.1|2816142_2816649_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZW86604.1|2816645_2817410_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZW86605.1|2817425_2817710_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZW86606.1|2817774_2818764_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZW86607.1|2818935_2819865_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZW86608.1|2819836_2820523_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZW86609.1|2820556_2821102_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZW86610.1|2821146_2822412_+	peptidase M48	NA	NA	NA	NA	NA
AZW86611.1|2822408_2823311_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZW86612.1|2824492_2825437_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW86613.1|2825531_2827049_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86614.1|2827090_2828719_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW86615.1|2828826_2829708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86616.1|2832820_2833195_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZW86617.1|2833219_2833558_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZW86618.1|2833601_2835236_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZW86619.1|2835274_2836621_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZW87816.1|2836728_2838150_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZW86620.1|2838219_2838804_-	nitroreductase	NA	NA	NA	NA	NA
AZW86621.1|2838906_2839857_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86622.1|2839991_2841098_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86623.1|2841108_2842206_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZW86624.1|2842350_2843556_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZW86625.1|2843562_2844084_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZW86626.1|2844080_2844572_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZW86627.1|2844568_2844820_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZW86628.1|2844800_2845286_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZW86629.1|2845421_2848883_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86630.1|2848879_2849785_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZW86631.1|2849794_2850226_-	lipoprotein	NA	NA	NA	NA	NA
AZW87817.1|2850472_2850976_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZW86632.1|2850987_2852454_+	MFS transporter	NA	NA	NA	NA	NA
AZW86633.1|2852528_2853404_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87818.1|2853400_2854408_-	biotin synthase	NA	NA	NA	NA	NA
AZW86634.1|2854875_2855181_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW86635.1|2855271_2855862_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87819.1|2856052_2857069_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	2860212	2927023	4107445	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZW86638.1|2860212_2861163_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86639.1|2861261_2862212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86640.1|2862208_2863003_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZW86641.1|2863034_2863739_-	oxidoreductase	NA	NA	NA	NA	NA
AZW86642.1|2863813_2864614_-	SURF1 family protein	NA	NA	NA	NA	NA
AZW86643.1|2864610_2865018_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZW86644.1|2865014_2865656_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZW86645.1|2865648_2867670_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW86646.1|2868909_2870241_+	MFS transporter	NA	NA	NA	NA	NA
AZW86647.1|2870237_2871188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86648.1|2872894_2873200_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86649.1|2873868_2874207_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW86650.1|2878760_2879363_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86651.1|2879459_2880749_+	MFS transporter	NA	NA	NA	NA	NA
AZW86652.1|2880806_2881538_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZW86653.1|2881534_2882338_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZW86654.1|2882334_2883423_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW86655.1|2883419_2884349_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW86656.1|2884497_2885643_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86657.1|2885664_2886615_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86658.1|2886945_2890767_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW86659.1|2890923_2891592_-	lipoprotein	NA	NA	NA	NA	NA
AZW86660.1|2891596_2893270_-	MCE family protein	NA	NA	NA	NA	NA
AZW86661.1|2893288_2894608_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZW86662.1|2894612_2896964_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZW87820.1|2896983_2899152_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZW86663.1|2899148_2904338_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZW86664.1|2904427_2904742_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZW86665.1|2904969_2905215_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZW86666.1|2905309_2905828_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZW86667.1|2905927_2907133_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZW86668.1|2907248_2908646_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZW86669.1|2908762_2909341_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZW86670.1|2909413_2910805_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZW86671.1|2910972_2911923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86672.1|2912203_2912824_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZW86673.1|2912820_2913234_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZW86674.1|2913230_2914274_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZW86675.1|2914329_2914518_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86676.1|2914527_2915292_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZW86677.1|2915382_2916039_+	adenylate kinase	NA	NA	NA	NA	NA
AZW86678.1|2916130_2916889_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW86679.1|2916914_2918516_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZW86680.1|2918716_2919721_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZW86681.1|2919821_2920085_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZW86682.1|2920202_2920979_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZW86683.1|2921569_2922520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86684.1|2924903_2926016_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZW86685.1|2926072_2927023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	2957409	2996598	4107445	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZW86714.1|2957409_2958360_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86715.1|2958346_2958592_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86716.1|2958480_2959377_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZW86717.1|2961654_2963880_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZW86718.1|2964044_2965133_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZW86719.1|2965089_2965743_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW86720.1|2965790_2966588_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86721.1|2967119_2968070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86722.1|2968150_2969299_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW86723.1|2969355_2970306_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86724.1|2970292_2970511_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86725.1|2970404_2970710_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW86726.1|2970738_2971173_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW86727.1|2971174_2972419_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW86728.1|2972415_2973126_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87822.1|2973140_2974052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW86729.1|2974414_2974819_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86730.1|2974815_2975274_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86731.1|2975280_2976189_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87823.1|2976185_2977052_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW86732.1|2977038_2977866_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW86733.1|2977876_2979004_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZW86734.1|2980081_2981320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86735.1|2981361_2982624_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86736.1|2982630_2983383_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW86737.1|2983434_2983620_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86738.1|2983895_2984360_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZW86739.1|2984391_2985051_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZW86740.1|2985195_2987304_+	AsmA family protein	NA	NA	NA	NA	NA
AZW86741.1|2987300_2988251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86742.1|2988354_2988975_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87824.1|2989078_2989819_+	oxidoreductase	NA	NA	NA	NA	NA
AZW86743.1|2990953_2992078_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86744.1|2992123_2992492_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86745.1|2992733_2993684_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86746.1|2994719_2995262_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86747.1|2995466_2995661_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86748.1|2995647_2996598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	3185518	3246547	4107445	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZW86899.1|3185518_3186469_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86900.1|3186477_3187026_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZW86901.1|3187022_3187631_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW86902.1|3187813_3188284_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW86903.1|3188290_3189550_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW86904.1|3189602_3190415_-	oxidoreductase	NA	NA	NA	NA	NA
AZW86905.1|3190529_3191084_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW86906.1|3191093_3192083_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW86907.1|3192262_3192982_-	VOC family protein	NA	NA	NA	NA	NA
AZW86908.1|3192998_3195734_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZW86909.1|3195913_3196900_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZW86910.1|3196941_3197436_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZW86911.1|3197547_3198471_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZW86912.1|3198699_3199884_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZW86913.1|3200072_3201299_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZW86914.1|3201303_3202125_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZW86915.1|3202137_3203088_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZW86916.1|3203084_3204491_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZW86917.1|3204487_3205561_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZW86918.1|3205557_3206751_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZW86919.1|3206747_3208280_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZW86920.1|3208276_3209446_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZW86921.1|3209435_3212273_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
AZW87840.1|3212269_3213970_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZW86922.1|3213996_3214275_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZW86923.1|3214274_3215369_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZW86924.1|3215377_3215869_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZW86925.1|3216608_3218417_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZW86926.1|3218456_3219536_-	dihydroorotase	NA	NA	NA	NA	NA
AZW86927.1|3219532_3220726_-	amidohydrolase	NA	NA	NA	NA	NA
AZW86928.1|3220875_3221154_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZW86929.1|3221482_3221875_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87841.1|3228599_3229076_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW86930.1|3229228_3230341_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZW86931.1|3230408_3230969_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZW86932.1|3230992_3231325_-	cytochrome C	NA	NA	NA	NA	NA
AZW86933.1|3231308_3232997_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZW86934.1|3233116_3233905_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZW86935.1|3234612_3235563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86936.1|3236007_3236319_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZW86937.1|3236318_3236849_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86938.1|3237011_3237962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86939.1|3238060_3239011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86940.1|3239300_3239765_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZW86941.1|3239779_3241285_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZW86942.1|3241538_3243146_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW86943.1|3243201_3244107_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW86944.1|3244547_3245498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86945.1|3245596_3246547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	3268272	3306687	4107445	transposase,holin	Tupanvirus(16.67%)	36	NA	NA
AZW86967.1|3268272_3268608_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW86968.1|3268607_3269450_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZW86969.1|3269548_3270499_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86970.1|3270563_3271535_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86971.1|3271598_3272618_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZW87844.1|3272619_3273993_-	MFS transporter	NA	NA	NA	NA	NA
AZW86972.1|3274270_3274951_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZW86973.1|3274963_3277090_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZW86974.1|3277086_3278181_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZW86975.1|3278195_3279455_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW86976.1|3279474_3281199_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZW86977.1|3281437_3282190_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZW86978.1|3282328_3283279_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87845.1|3283591_3285070_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZW86979.1|3285076_3286186_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZW86980.1|3286197_3286878_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW86981.1|3286899_3287655_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW87846.1|3287790_3288675_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW86982.1|3288762_3289344_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86983.1|3289436_3289559_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86984.1|3289604_3289904_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW87847.1|3290055_3290481_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86985.1|3292687_3293191_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW86986.1|3293206_3294157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86987.1|3294143_3294341_-	hypothetical protein	NA	NA	NA	NA	NA
AZW86988.1|3294684_3295458_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW86989.1|3295590_3296601_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW86990.1|3296752_3298408_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW86991.1|3298462_3298804_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW86992.1|3298817_3300257_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW86993.1|3300389_3301205_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86994.1|3301223_3301412_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86995.1|3301398_3302349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW86996.1|3303736_3304684_+	hypothetical protein	NA	NA	NA	NA	NA
AZW86997.1|3304910_3305651_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW86998.1|3305736_3306687_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	3382094	3435835	4107445	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZW87050.1|3382094_3383045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87051.1|3383449_3384094_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZW87052.1|3384118_3384703_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZW87053.1|3384803_3385421_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZW87054.1|3385423_3387139_-	urease subunit alpha	NA	NA	NA	NA	NA
AZW87055.1|3387135_3387444_-	urease subunit beta	NA	NA	NA	NA	NA
AZW87056.1|3387460_3388096_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZW87057.1|3388122_3388425_-	urease subunit gamma	NA	NA	NA	NA	NA
AZW87058.1|3388525_3389380_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZW87059.1|3389961_3390234_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW87060.1|3390651_3391059_-	GFA family protein	NA	NA	NA	NA	NA
AZW87061.1|3391428_3392223_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87062.1|3392323_3393559_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW87063.1|3393627_3394644_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW87064.1|3394640_3396032_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW87065.1|3396028_3397225_+	MFS transporter	NA	NA	NA	NA	NA
AZW87066.1|3397221_3398760_-	SpoVR family protein	NA	NA	NA	NA	NA
AZW87067.1|3398756_3400016_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87068.1|3401956_3402907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87069.1|3403673_3404768_-	CoA transferase	NA	NA	NA	NA	NA
AZW87070.1|3404760_3406095_-	CoA ligase	NA	NA	NA	NA	NA
AZW87071.1|3406048_3406732_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87072.1|3406757_3407921_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW87073.1|3407917_3408919_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW87074.1|3408918_3409791_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW87075.1|3409787_3410537_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZW87076.1|3410533_3411325_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZW87077.1|3411321_3412461_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW87078.1|3412769_3413522_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW87079.1|3413555_3414338_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW87080.1|3414341_3414731_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW87081.1|3415870_3416734_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW87082.1|3416769_3417858_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87083.1|3417854_3418805_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87084.1|3418791_3419160_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87085.1|3419158_3422137_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87086.1|3423063_3423942_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZW87087.1|3425890_3426841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87088.1|3426837_3427305_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZW87089.1|3427347_3428118_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW87090.1|3428138_3428939_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZW87091.1|3428949_3430359_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZW87092.1|3430453_3431239_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW87851.1|3431478_3432495_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW87093.1|3432602_3432995_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW87094.1|3433132_3433813_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZW87095.1|3433817_3434816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW87096.1|3434884_3435835_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	3441990	3501290	4107445	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZW87100.1|3441990_3443754_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZW87101.1|3443865_3444744_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZW87102.1|3444856_3445672_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZW87103.1|3445675_3445927_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZW87852.1|3446011_3447028_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW87104.1|3447358_3447580_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87105.1|3449940_3450858_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW87106.1|3451355_3452564_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW87107.1|3452643_3454215_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW87108.1|3454332_3455268_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZW87109.1|3455456_3456401_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZW87110.1|3456469_3456685_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87111.1|3456968_3462686_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZW87112.1|3462691_3463819_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZW87113.1|3463874_3464501_+	aminotransferase	NA	NA	NA	NA	NA
AZW87853.1|3464772_3465789_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW87114.1|3465884_3466595_-	oxidoreductase	NA	NA	NA	NA	NA
AZW87854.1|3466591_3467581_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW87115.1|3467712_3469308_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZW87116.1|3469310_3470048_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87117.1|3470203_3471076_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZW87118.1|3471344_3472565_+	MFS transporter	NA	NA	NA	NA	NA
AZW87119.1|3472561_3473221_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW87120.1|3473292_3473925_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZW87121.1|3473954_3474473_+	flavin reductase	NA	NA	NA	NA	NA
AZW87122.1|3474483_3475593_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW87123.1|3475639_3476494_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZW87124.1|3476495_3477398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87125.1|3478620_3479571_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87126.1|3481327_3482317_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87127.1|3482492_3483281_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZW87128.1|3483277_3484309_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZW87129.1|3484327_3484891_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZW87130.1|3484946_3486467_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZW87131.1|3486730_3487435_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW87132.1|3487442_3488180_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZW87133.1|3488285_3488660_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZW87134.1|3488702_3489992_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87135.1|3489988_3491158_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZW87136.1|3491154_3491994_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZW87137.1|3492053_3492989_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZW87138.1|3493001_3493952_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87139.1|3494050_3495013_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZW87140.1|3495044_3495404_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZW87141.1|3495528_3496431_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZW87142.1|3496432_3498205_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZW87143.1|3498239_3499016_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW87144.1|3500339_3501290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025348	Bordetella pertussis strain J234 chromosome, complete genome	4107445	3516228	3574301	4107445	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZW87156.1|3516228_3517179_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87157.1|3517307_3518441_-	peptidase	NA	NA	NA	NA	NA
AZW87158.1|3518484_3519390_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW87159.1|3519392_3521093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZW87160.1|3521089_3522010_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW87161.1|3522017_3522995_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW87162.1|3523053_3524088_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW87163.1|3526062_3526299_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87164.1|3526425_3527289_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZW87165.1|3527377_3528199_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW87166.1|3528278_3529016_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW87167.1|3529012_3530005_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZW87168.1|3530118_3530781_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87169.1|3530825_3531974_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW87170.1|3534297_3535248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87171.1|3535588_3536539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87172.1|3536637_3537588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87173.1|3537884_3538382_+	hypothetical protein	NA	NA	NA	NA	NA
AZW87174.1|3538424_3540200_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZW87857.1|3540246_3541074_+	copper resistance protein B	NA	NA	NA	NA	NA
AZW87175.1|3541080_3541815_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW87176.1|3542984_3543779_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW87177.1|3544068_3544659_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW87178.1|3544692_3546021_-	amidase	NA	NA	NA	NA	NA
AZW87179.1|3546095_3547241_-	transporter	NA	NA	NA	NA	NA
AZW87180.1|3547352_3548351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87181.1|3548313_3548748_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZW87182.1|3550264_3551149_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW87183.1|3551145_3552351_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW87184.1|3552347_3553208_-	endonuclease	NA	NA	NA	NA	NA
AZW87185.1|3553320_3555111_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZW87186.1|3555151_3555817_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZW87187.1|3555817_3556126_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZW87858.1|3556291_3557578_-	hypothetical protein	NA	NA	NA	NA	NA
AZW87188.1|3559011_3559962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW87189.1|3561913_3563128_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZW87190.1|3563233_3564223_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZW87191.1|3564219_3564828_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZW87192.1|3564840_3565470_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZW87193.1|3565466_3566087_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZW87194.1|3566118_3566910_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZW87195.1|3567752_3568217_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZW87196.1|3568235_3569162_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZW87197.1|3569215_3570502_-	cytochrome c	NA	NA	NA	NA	NA
AZW87198.1|3571432_3572305_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZW87199.1|3572301_3573252_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZW87200.1|3573350_3574301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
