The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	0	122073	4104296	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZW77105.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZW77106.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZW77107.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZW77108.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW77109.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZW77110.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZW77111.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZW77112.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZW77113.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZW77114.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZW77115.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZW77116.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZW77117.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZW77118.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZW80501.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZW77119.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77120.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZW77121.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW77122.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77123.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZW77124.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77125.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZW77126.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZW80502.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77127.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW77128.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW77129.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77130.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZW77131.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZW77132.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW77133.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZW77134.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW77135.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZW77136.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZW77137.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZW77138.1|43346_43646_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77139.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77140.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77141.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW77142.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77143.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZW77144.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZW77145.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77146.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZW77147.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZW77148.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZW77149.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77150.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77151.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77152.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77153.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW77154.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW77155.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77156.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77157.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZW77158.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZW77159.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZW77160.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW77161.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77162.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZW77163.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZW77164.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZW77165.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW77166.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZW77167.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80503.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77168.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZW77169.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80504.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77170.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZW77171.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZW77172.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW77173.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZW77174.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZW77175.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZW77176.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZW77177.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZW77178.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW77179.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZW80505.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZW77180.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZW77181.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77182.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZW77183.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZW77184.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW77185.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZW77186.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77187.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW77188.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZW77189.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZW77190.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZW77191.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZW77192.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZW77193.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZW77194.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZW77195.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZW77196.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77197.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW77198.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZW77199.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW77200.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW80506.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZW77201.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77202.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW77203.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW77204.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW77205.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77206.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZW77207.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZW77208.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	135157	207636	4104296	tRNA,transposase	Bacillus_phage(16.67%)	60	NA	NA
AZW77216.1|135157_136108_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77217.1|136526_138035_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
AZW77218.1|138781_142744_+	FAD-linked oxidase	NA	NA	NA	NA	NA
AZW77219.1|142796_143579_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77220.1|143666_144890_-	CoA transferase	NA	NA	NA	NA	NA
AZW80510.1|144873_145806_-	lipase	NA	NA	NA	NA	NA
AZW77221.1|145811_146624_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW77222.1|146644_147088_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77223.1|147106_147865_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80511.1|147937_148861_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77224.1|149027_149810_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77225.1|150576_151557_-	carboxylase	NA	NA	NA	NA	NA
AZW77226.1|151553_152282_-	allophanate hydrolase subunit 1	NA	NA	NA	NA	NA
AZW77227.1|152306_152738_-	glyoxalase	NA	NA	NA	NA	NA
AZW77228.1|152839_153715_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77229.1|153766_154987_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
AZW77230.1|155070_155532_-	metal-binding protein	NA	NA	NA	NA	NA
AZW77231.1|155637_157035_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZW77232.1|157031_157709_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
AZW77233.1|157764_159075_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
AZW77234.1|159086_159785_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
AZW77235.1|159948_160725_+	ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	NA	NA	NA	NA	NA
AZW77236.1|160890_161913_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
AZW77237.1|162141_162777_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77238.1|162773_164336_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
AZW77239.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77240.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77241.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZW77242.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZW77243.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZW77244.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZW77245.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80512.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZW77246.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77247.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZW77248.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZW77249.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW77250.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZW77251.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77252.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZW77253.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZW77254.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZW77255.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZW77256.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZW77257.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZW80513.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZW77258.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77259.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZW77260.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW77261.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77262.1|195455_196406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77263.1|196451_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZW77264.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW77265.1|198428_199529_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZW77266.1|199610_199985_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZW77267.1|200044_202909_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZW77268.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77269.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
AZW77270.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77271.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	216715	268623	4104296	protease,tRNA,transposase	uncultured_Caudovirales_phage(33.33%)	41	NA	NA
AZW77282.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZW77283.1|220104_223047_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZW77284.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZW77285.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZW77286.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZW77287.1|225503_226454_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77288.1|226552_227503_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77289.1|227489_227669_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77290.1|227721_228417_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77291.1|228433_229846_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW77292.1|229958_231389_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZW77293.1|231430_233344_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZW77294.1|233662_234229_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZW77295.1|234319_235321_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZW77296.1|235435_236386_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77297.1|236472_237423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77298.1|237419_238370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77299.1|238468_239266_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW77300.1|240215_240626_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZW77301.1|241647_242391_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77302.1|242434_243478_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77303.1|243648_245751_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77304.1|247161_248118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77305.1|248136_248628_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZW77306.1|248624_249980_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZW77307.1|249980_250679_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZW77308.1|250675_251377_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZW77309.1|251629_252679_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZW77310.1|252784_253726_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZW77311.1|253722_255612_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZW77312.1|255698_256337_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80515.1|256479_257724_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZW77313.1|257795_258332_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZW77314.1|258483_259875_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZW77315.1|259891_260872_-	AEC family transporter	NA	NA	NA	NA	NA
AZW77316.1|261007_261991_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZW77317.1|262055_262955_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77318.1|263061_264816_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW77319.1|264823_265948_-	CoA transferase	NA	NA	NA	NA	NA
AZW77320.1|265961_266942_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77321.1|267672_268623_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	279239	333434	4104296	protease,transposase	Pithovirus(14.29%)	54	NA	NA
AZW77330.1|279239_280190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77331.1|280176_280392_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77332.1|280467_280629_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZW77333.1|280636_280777_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77334.1|281295_281745_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZW77335.1|281754_282366_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW77336.1|282524_283379_-	cytochrome c1	NA	NA	NA	NA	NA
AZW77337.1|283398_284781_-	cytochrome b	NA	NA	NA	NA	NA
AZW77338.1|284845_285487_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZW77339.1|285626_286085_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZW77340.1|286109_286886_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZW80516.1|286939_288076_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZW77341.1|288072_289023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77342.1|289121_289748_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW77343.1|289770_290697_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZW77344.1|290705_292292_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77345.1|292288_293293_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZW77346.1|293492_294353_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW77347.1|294384_295386_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZW77348.1|295456_296266_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW77349.1|296343_298203_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZW77350.1|298331_299534_-	MFS transporter	NA	NA	NA	NA	NA
AZW77351.1|299647_300529_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77352.1|302031_302592_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZW77353.1|302651_303602_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77354.1|303793_304054_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77355.1|304169_305120_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77356.1|305116_306115_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77357.1|306157_306661_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77358.1|306664_307555_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW77359.1|307777_308941_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77360.1|309037_309958_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77361.1|309961_310927_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77362.1|310923_311718_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AZW77363.1|311711_312416_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AZW77364.1|315779_316643_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW77365.1|316645_317815_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW77366.1|317855_319505_+	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AZW77367.1|319506_319941_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW77368.1|319965_320367_+	RidA family protein	NA	NA	NA	NA	NA
AZW77369.1|320460_322086_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AZW77370.1|322325_323609_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AZW77371.1|323625_324279_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
AZW77372.1|324275_325124_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZW80517.1|325240_325405_+	rubredoxin	NA	NA	NA	NA	NA
AZW77373.1|325420_326098_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
AZW77374.1|326090_326492_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZW77375.1|326505_327459_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AZW77376.1|327455_328631_+	dihydroorotase	NA	NA	NA	NA	NA
AZW77377.1|328750_329491_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW77378.1|329527_330361_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AZW77379.1|330357_331626_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZW77380.1|331632_332361_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AZW77381.1|332483_333434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	392956	450465	4104296	transposase	Orpheovirus(14.29%)	50	NA	NA
AZW77440.1|392956_393907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77441.1|394043_394961_+	reductase	NA	NA	NA	NA	NA
AZW77442.1|394957_395206_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZW77443.1|395202_396408_+	CoA transferase	NA	NA	NA	NA	NA
AZW77444.1|396480_397476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77445.1|397498_398719_-	CoA transferase	NA	NA	NA	NA	NA
AZW77446.1|398715_399360_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77447.1|401090_401900_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW80522.1|402117_403158_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZW77448.1|403256_404240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77449.1|404166_404868_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77450.1|404916_405687_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW77451.1|405683_406925_-	CoA transferase	NA	NA	NA	NA	NA
AZW77452.1|407029_408736_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW77453.1|408732_409629_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77454.1|409669_411259_-	sulfurtransferase	NA	NA	NA	NA	NA
AZW77455.1|411308_412301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77456.1|412369_412969_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80523.1|413429_414407_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77457.1|414485_415436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77458.1|415524_416439_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW77459.1|416435_417095_+	LysE family translocator	NA	NA	NA	NA	NA
AZW77460.1|417184_418108_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZW77461.1|418113_418569_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77462.1|418565_419669_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZW80524.1|419588_419897_+	GtrA family protein	NA	NA	NA	NA	NA
AZW77463.1|419856_421476_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZW77464.1|421472_422531_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZW77465.1|422660_423155_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW77466.1|423247_424225_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77467.1|424420_425626_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZW77468.1|425622_427134_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW80525.1|427149_428463_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZW77469.1|428653_428833_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77470.1|429242_429977_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZW77471.1|432421_433372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77472.1|433503_433902_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZW77473.1|434312_434783_-	universal stress protein	NA	NA	NA	NA	NA
AZW77474.1|434871_435216_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZW77475.1|435315_436716_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW77476.1|438504_439023_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZW77477.1|439133_439889_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZW77478.1|440084_441317_+	CoA transferase	NA	NA	NA	NA	NA
AZW77479.1|441309_442095_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW77480.1|442161_443133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77481.1|443143_444121_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77482.1|444246_445419_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW77483.1|445445_446474_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW77484.1|446539_447733_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW77485.1|449514_450465_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	621852	722316	4104296	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZW77636.1|621852_622803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77637.1|623501_623885_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77638.1|623942_624545_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZW80531.1|624562_624964_-	DoxX family protein	NA	NA	NA	NA	NA
AZW80532.1|625097_625991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77639.1|625987_626569_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZW77640.1|627363_628098_+	arginyltransferase	NA	NA	NA	NA	NA
AZW77641.1|628138_629188_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZW77642.1|629335_629914_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZW77643.1|630300_631278_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZW77644.1|631371_635766_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZW77645.1|635966_636815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77646.1|636973_637786_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZW77647.1|637841_638792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77648.1|638890_639691_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77649.1|639752_640136_+	thioredoxin	NA	NA	NA	NA	NA
AZW77650.1|640147_641581_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZW77651.1|641787_642117_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZW80533.1|642119_642788_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77652.1|643051_643972_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZW77653.1|644018_644231_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZW77654.1|644253_644676_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZW77655.1|644692_645793_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW77656.1|645889_647407_-	peptidase	NA	NA	NA	NA	NA
AZW77657.1|647482_648322_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZW77658.1|648343_649225_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZW77659.1|649306_650401_-	porin	NA	NA	NA	NA	NA
AZW77660.1|650694_651645_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80534.1|651719_652661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77661.1|652744_653104_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77662.1|653485_654523_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77663.1|654839_656180_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZW77664.1|656189_656642_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77665.1|656738_657920_+	monooxygenase	NA	NA	NA	NA	NA
AZW77666.1|657979_659011_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZW77667.1|659051_659291_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW77668.1|659360_660950_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZW77669.1|660949_661498_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZW77670.1|661578_662151_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZW77671.1|662169_663081_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZW77672.1|663154_664123_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZW77673.1|664245_665319_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZW77674.1|665323_667144_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZW77675.1|667220_668171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77676.1|668259_668595_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZW77677.1|668728_669379_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZW77678.1|669400_670819_-	amidase	NA	NA	NA	NA	NA
AZW77679.1|670888_671644_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80535.1|671612_672371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77680.1|672381_673263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77681.1|673279_673987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZW77682.1|673989_674748_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZW77683.1|674957_676700_+	sulfite reductase	NA	NA	NA	NA	NA
AZW77684.1|676692_677217_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZW77685.1|677256_678051_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77686.1|678218_679292_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77687.1|679390_680341_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77688.1|680592_680805_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80536.1|680870_681482_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZW77689.1|681961_682282_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77690.1|682274_682973_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77691.1|682987_683209_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77692.1|683226_684177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80537.1|684852_685302_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZW77693.1|685288_686566_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZW77694.1|686568_687987_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZW80538.1|688015_689071_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZW77695.1|689076_689319_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZW77696.1|689441_690044_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZW77697.1|690472_691423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77698.1|691440_692088_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZW77699.1|692097_692349_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77700.1|692411_692894_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZW77701.1|692895_693096_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77702.1|693095_693491_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZW77703.1|693487_693886_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZW77704.1|693882_694305_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77705.1|694312_694813_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZW77706.1|695067_695586_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZW77707.1|695595_695925_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZW77708.1|695942_696233_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZW77709.1|696258_698871_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZW77710.1|698880_699240_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77711.1|699307_699841_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZW77712.1|699837_700227_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZW77713.1|700219_704176_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZW77714.1|704180_704597_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77715.1|704815_705079_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZW77716.1|705078_705891_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77717.1|705895_706138_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77718.1|706116_706668_+	lysozyme	NA	NA	NA	NA	NA
AZW77719.1|706649_707183_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZW77720.1|707179_707461_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77721.1|707803_708004_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77722.1|708010_708682_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZW77723.1|709037_709724_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW77724.1|709704_710277_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW77725.1|710342_712073_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZW77726.1|712125_712554_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW77727.1|712556_713237_+	protein TolQ	NA	NA	NA	NA	NA
AZW77728.1|713236_713695_+	protein TolR	NA	NA	NA	NA	NA
AZW77729.1|713731_714706_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZW77730.1|714722_716039_+	protein TolB	NA	NA	NA	NA	NA
AZW77731.1|716070_716568_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZW77732.1|716654_717344_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZW77733.1|717343_718393_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW77734.1|718389_719184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZW77735.1|719352_719703_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77736.1|719678_720236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77737.1|721160_721379_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77738.1|721365_722316_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	749241	822403	4104296	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZW77759.1|749241_750192_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77760.1|750846_751944_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZW77761.1|751977_753243_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZW77762.1|753400_754351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77763.1|754594_755185_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZW80540.1|755200_757645_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW77764.1|757764_758736_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77765.1|758867_759392_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZW77766.1|759351_760302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZW77767.1|760523_762719_-	DNA methylase	NA	NA	NA	NA	NA
AZW77768.1|762791_763199_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW77769.1|763321_764272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77770.1|764387_764831_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW77771.1|764893_765688_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW77772.1|765853_766990_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZW77773.1|767060_768194_-	GTPase ObgE	NA	NA	NA	NA	NA
AZW77774.1|768343_768604_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZW77775.1|768637_768949_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZW77776.1|769373_770522_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZW77777.1|770636_771602_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZW77778.1|771870_772737_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77779.1|772867_774916_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW77780.1|774933_776931_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW77781.1|776965_778303_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW77782.1|778565_780419_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77783.1|780473_781955_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW77784.1|781970_782558_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZW80541.1|782640_782820_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77785.1|783006_788127_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZW77786.1|788204_790343_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZW77787.1|790339_791662_+	protein CyaD	NA	NA	NA	NA	NA
AZW77788.1|791663_793088_+	protein CyaE	NA	NA	NA	NA	NA
AZW77789.1|793178_794087_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77790.1|794151_795066_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77791.1|795903_796587_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW77792.1|796603_797347_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZW77793.1|797376_798237_+	aminotransferase	NA	NA	NA	NA	NA
AZW77794.1|798244_798811_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77795.1|798899_799856_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77796.1|799900_800653_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW77797.1|800649_802395_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZW77798.1|802479_803214_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77799.1|803530_804553_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZW77800.1|804568_805291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77801.1|805435_806443_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZW77802.1|806483_808016_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZW77803.1|808012_809131_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZW77804.1|809127_809910_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW77805.1|809921_810785_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZW80542.1|810803_811901_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77806.1|811969_812896_-	VOC family protein	NA	NA	NA	NA	NA
AZW77807.1|812930_814625_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW77808.1|814824_815760_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZW77809.1|815865_816816_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77810.1|816914_817571_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZW77811.1|817718_820427_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZW77812.1|820436_821456_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZW77813.1|821452_822403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	855150	904414	4104296	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZW77842.1|855150_856101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80543.1|856073_856673_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77843.1|856674_857109_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW77844.1|857105_857540_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77845.1|857523_858327_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZW77846.1|858343_859159_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZW77847.1|859155_859971_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZW77848.1|860117_860819_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77849.1|860846_862805_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZW77850.1|862887_863838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77851.1|864058_864727_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW77852.1|864850_865957_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW77853.1|865969_869083_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZW77854.1|869079_870573_+	RND transporter	NA	NA	NA	NA	NA
AZW77855.1|870587_871259_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW77856.1|871302_871797_-	azurin	NA	NA	NA	NA	NA
AZW77857.1|871937_872585_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW80544.1|872688_874737_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW77858.1|874733_876746_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW77859.1|876771_878106_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW77860.1|878214_879207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77861.1|879273_881358_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZW77862.1|881382_882354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77863.1|882482_883484_-	peptidase M14	NA	NA	NA	NA	NA
AZW77864.1|883517_884759_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW77865.1|884839_885763_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZW77866.1|885840_886665_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW77867.1|886861_887878_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW77868.1|888074_889058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77869.1|890656_892045_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW77870.1|892075_893065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77871.1|893175_894408_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW77872.1|894689_895490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77873.1|895512_897744_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZW77874.1|898531_898978_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZW77875.1|898999_899746_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZW77876.1|899889_900867_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZW77877.1|901500_902112_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZW77878.1|902105_903323_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZW77879.1|903463_904414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	914026	978966	4104296	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZW77888.1|914026_914977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77889.1|914973_916824_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZW77890.1|917204_917864_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZW77891.1|917951_918104_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77892.1|918212_918380_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77893.1|918391_919072_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZW77894.1|919353_920070_+	flagellar brake protein	NA	NA	NA	NA	NA
AZW77895.1|920084_921386_-	phospholipase	NA	NA	NA	NA	NA
AZW77896.1|923530_926419_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZW77897.1|926642_927995_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW77898.1|928023_928545_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZW77899.1|928541_929996_+	carboxylase	NA	NA	NA	NA	NA
AZW77900.1|930030_930279_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77901.1|930384_931260_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77902.1|931285_932341_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77903.1|932353_933145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77904.1|933177_934548_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZW77905.1|935724_936675_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77906.1|936727_936949_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77907.1|937108_937321_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77908.1|937440_938559_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW77909.1|938655_938871_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77910.1|939064_939316_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77911.1|939428_940379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77912.1|940375_940759_-	ferredoxin	NA	NA	NA	NA	NA
AZW77913.1|940813_942631_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZW80546.1|942777_943605_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZW77914.1|943650_944631_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW77915.1|944627_944840_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77916.1|944836_946018_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZW77917.1|946181_946916_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZW77918.1|946917_949530_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZW77919.1|949665_951579_-	S9 family peptidase	NA	NA	NA	NA	NA
AZW77920.1|952194_952605_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW77921.1|952702_953788_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZW77922.1|953886_954837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77923.1|954833_955808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW77924.1|955932_956844_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZW80547.1|957120_957513_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZW77925.1|957642_958593_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77926.1|958622_958805_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZW77927.1|958843_959101_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77928.1|959577_960759_-	MFS transporter	NA	NA	NA	NA	NA
AZW77929.1|960974_961652_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW77930.1|961648_962422_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZW77931.1|962499_963081_-	OmpA family protein	NA	NA	NA	NA	NA
AZW77932.1|963451_966133_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZW77933.1|966132_967266_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZW77934.1|967258_968344_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZW77935.1|968430_969330_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZW77936.1|969326_970655_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZW77937.1|970669_971341_+	cytidylate kinase	NA	NA	NA	NA	NA
AZW77938.1|971513_973244_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZW77939.1|973245_973605_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZW77940.1|973796_974111_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZW77941.1|974153_975374_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZW77942.1|975370_976312_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZW77943.1|976308_977298_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZW77944.1|977332_977917_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZW77945.1|978015_978966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	998366	1061517	4104296	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZW77960.1|998366_999317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77961.1|999421_1000471_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZW77962.1|1000608_1001625_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW77963.1|1003133_1003706_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZW77964.1|1003765_1004497_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZW80549.1|1004548_1005466_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77965.1|1006273_1009453_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW77966.1|1009449_1010832_+	multidrug transporter	NA	NA	NA	NA	NA
AZW77967.1|1010901_1011153_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZW77968.1|1011298_1011949_-	SCO family protein	NA	NA	NA	NA	NA
AZW77969.1|1012099_1014214_-	M3 family peptidase	NA	NA	NA	NA	NA
AZW77970.1|1014289_1015141_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZW77971.1|1015137_1015764_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW77972.1|1015760_1017515_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZW77973.1|1017807_1020513_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZW77974.1|1020525_1022187_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZW77975.1|1022199_1023990_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZW77976.1|1024211_1025387_-	flagellin FliC	NA	NA	NA	NA	NA
AZW77977.1|1025429_1026380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77978.1|1026478_1027219_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZW77979.1|1027413_1029450_+	transketolase	NA	NA	NA	NA	NA
AZW77980.1|1029467_1030478_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZW77981.1|1030595_1031789_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZW77982.1|1031818_1032592_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW77983.1|1032588_1033779_-	acetate kinase	NA	NA	NA	NA	NA
AZW77984.1|1033804_1034743_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZW80550.1|1034739_1037088_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZW77985.1|1037242_1037950_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW77986.1|1037987_1039121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77987.1|1039397_1039946_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZW77988.1|1039964_1040450_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW77989.1|1040627_1041566_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZW77990.1|1041568_1041886_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77991.1|1041931_1042876_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77992.1|1044556_1045207_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZW77993.1|1045260_1045596_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77994.1|1045592_1046453_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZW77995.1|1046469_1046751_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77996.1|1046824_1047088_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZW77997.1|1047331_1048282_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77998.1|1048580_1049318_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZW77999.1|1049753_1050077_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZW78000.1|1050111_1050672_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZW78001.1|1050792_1051668_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZW78002.1|1051680_1052628_+	motility protein MotB	NA	NA	NA	NA	NA
AZW78003.1|1052729_1053023_+	response regulator	NA	NA	NA	NA	NA
AZW78004.1|1053049_1055107_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZW78005.1|1055121_1055622_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZW78006.1|1055695_1057402_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZW78007.1|1058265_1059318_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZW78008.1|1059370_1059760_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZW78009.1|1059768_1060401_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZW78010.1|1060500_1061517_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	1067501	1135663	4104296	tRNA,holin,transposase	uncultured_Mediterranean_phage(25.0%)	55	NA	NA
AZW78015.1|1067501_1068929_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZW78016.1|1069866_1070883_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW78017.1|1071215_1072151_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZW78018.1|1072200_1074081_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZW78019.1|1074147_1074492_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZW78020.1|1074636_1075773_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZW78021.1|1075769_1076843_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZW78022.1|1077000_1078437_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZW80552.1|1078527_1079169_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW78023.1|1079504_1080521_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW78024.1|1080853_1083601_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZW80553.1|1083667_1085089_-	siroheme synthase	NA	NA	NA	NA	NA
AZW78025.1|1085352_1086069_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78026.1|1086153_1086471_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZW78027.1|1086511_1086925_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW78028.1|1086926_1087286_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78029.1|1087328_1088873_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZW78030.1|1088956_1089787_+	transglycosylase	NA	NA	NA	NA	NA
AZW78031.1|1089821_1090976_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZW78032.1|1091018_1091891_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78033.1|1092007_1094296_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW78034.1|1095502_1095967_+	barstar family protein 2	NA	NA	NA	NA	NA
AZW78035.1|1095993_1096944_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80554.1|1097311_1098088_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZW78036.1|1098132_1098990_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZW78037.1|1099011_1100028_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZW78038.1|1100162_1101203_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZW78039.1|1101397_1103479_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZW78040.1|1103714_1105208_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZW78041.1|1105438_1106233_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW78042.1|1106453_1107812_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZW78043.1|1107808_1108651_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZW78044.1|1108669_1110556_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZW78045.1|1110793_1111426_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZW78046.1|1111444_1112047_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78047.1|1112198_1113149_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78048.1|1113951_1114752_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78049.1|1114795_1115782_-	homoserine kinase	NA	NA	NA	NA	NA
AZW78050.1|1115921_1116935_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZW78051.1|1116931_1117882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78052.1|1117994_1118453_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZW78053.1|1118489_1119803_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78054.1|1119820_1120192_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZW78055.1|1120188_1121652_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZW78056.1|1121744_1122521_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW78057.1|1122502_1125382_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZW78058.1|1125564_1126515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78059.1|1126682_1127507_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZW78060.1|1127506_1128385_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW78061.1|1129289_1130405_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78062.1|1130412_1131228_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZW78063.1|1131224_1133090_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZW78064.1|1133168_1133801_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78065.1|1133797_1134100_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78066.1|1134142_1135663_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	1316904	1382333	4104296	transposase	Planktothrix_phage(33.33%)	55	NA	NA
AZW78207.1|1316904_1317855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78208.1|1318623_1319262_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW80565.1|1320151_1320598_+	glutamate racemase	NA	NA	NA	NA	NA
AZW78209.1|1320679_1321381_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZW78210.1|1321381_1322149_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZW78211.1|1322145_1323384_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZW78212.1|1323383_1324310_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZW78213.1|1324412_1325528_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78214.1|1325543_1326494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78215.1|1326847_1327429_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZW78216.1|1327425_1328259_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZW80566.1|1328469_1329783_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZW78217.1|1329959_1330841_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZW78218.1|1330860_1331712_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZW78219.1|1331764_1332853_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZW78220.1|1332963_1334091_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW80567.1|1334325_1334937_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW78221.1|1335035_1335986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78222.1|1336207_1336585_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZW80568.1|1336732_1337230_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZW78223.1|1337226_1337754_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZW78224.1|1337887_1338703_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78225.1|1338715_1339897_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW78226.1|1339944_1340838_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZW80569.1|1340964_1341435_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78227.1|1341560_1342388_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZW78228.1|1342416_1343193_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZW78229.1|1343189_1343483_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZW78230.1|1343479_1343944_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW78231.1|1343955_1344741_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZW78232.1|1344766_1345267_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZW78233.1|1345349_1346528_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZW78234.1|1348155_1348491_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZW78235.1|1348678_1350127_+	CoA transferase	NA	NA	NA	NA	NA
AZW78236.1|1350184_1350529_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZW78237.1|1350635_1351175_-	peroxiredoxin	NA	NA	NA	NA	NA
AZW78238.1|1351267_1352218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78239.1|1352316_1353267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78240.1|1353253_1353736_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78241.1|1354005_1354437_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78242.1|1354618_1355023_-	DoxX family protein	NA	NA	NA	NA	NA
AZW78243.1|1356259_1356583_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78244.1|1356585_1357473_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZW78245.1|1357505_1357931_-	universal stress protein	NA	NA	NA	NA	NA
AZW78246.1|1358002_1358356_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78247.1|1358595_1359102_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78248.1|1359140_1360472_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZW78249.1|1360531_1361347_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZW78250.1|1361343_1362198_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZW80570.1|1365260_1367804_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZW78251.1|1369170_1370925_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZW78252.1|1370921_1373042_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZW78253.1|1373046_1375242_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZW80571.1|1375238_1378580_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZW78254.1|1381382_1382333_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	1446931	1502419	4104296	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZW78306.1|1446931_1447882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78307.1|1449083_1449530_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZW78308.1|1449522_1450998_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZW78309.1|1450994_1451750_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZW78310.1|1451742_1452753_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZW78311.1|1452742_1454419_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZW78312.1|1454731_1455064_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZW78313.1|1455077_1455473_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78314.1|1455482_1455809_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZW78315.1|1455805_1456132_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW78316.1|1456058_1457081_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW78317.1|1457077_1457458_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZW78318.1|1457475_1457904_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZW78319.1|1457911_1459285_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZW80575.1|1459425_1459803_-	flagellar protein	NA	NA	NA	NA	NA
AZW78320.1|1460065_1461373_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZW78321.1|1461433_1462264_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW78322.1|1462260_1462749_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZW78323.1|1462790_1464311_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZW80576.1|1464354_1464831_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW78324.1|1465634_1468232_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZW78325.1|1468261_1469083_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZW78326.1|1469809_1470559_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZW78327.1|1470691_1471621_+	elongation factor Ts	NA	NA	NA	NA	NA
AZW78328.1|1471718_1472435_+	UMP kinase	NA	NA	NA	NA	NA
AZW78329.1|1472449_1473010_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZW78330.1|1473047_1473941_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZW78331.1|1473960_1474818_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZW78332.1|1474814_1476014_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZW78333.1|1476053_1477388_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZW78334.1|1477440_1479777_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZW80577.1|1479902_1480466_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZW78335.1|1480474_1481566_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZW78336.1|1481637_1482093_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZW78337.1|1482093_1482888_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZW78338.1|1482884_1484066_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZW78339.1|1484052_1484658_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZW78340.1|1484654_1485428_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZW78341.1|1485439_1486267_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZW78342.1|1486428_1488792_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZW78343.1|1488859_1489579_-	GMP synthase	NA	NA	NA	NA	NA
AZW78344.1|1489702_1490128_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZW78345.1|1490162_1491113_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78346.1|1491230_1492157_+	paraslipin	NA	NA	NA	NA	NA
AZW78347.1|1492222_1493380_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZW78348.1|1493360_1493828_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZW78349.1|1493975_1494926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78350.1|1494942_1495377_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZW78351.1|1495366_1495717_+	RnfH family protein	NA	NA	NA	NA	NA
AZW78352.1|1495913_1497068_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW78353.1|1497064_1498237_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW78354.1|1498284_1499178_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW78355.1|1499223_1499661_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW78356.1|1499720_1500410_+	VIT family protein	NA	NA	NA	NA	NA
AZW78357.1|1500419_1501370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78358.1|1501468_1502419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	1541742	1599824	4104296	tRNA,protease,transposase	Planktothrix_phage(15.38%)	60	NA	NA
AZW78391.1|1541742_1542555_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZW78392.1|1542699_1543794_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78393.1|1544005_1544635_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78394.1|1544637_1546305_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW78395.1|1546319_1546976_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZW78396.1|1547455_1548406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78397.1|1548432_1549206_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZW78398.1|1549217_1550459_+	MFS transporter	NA	NA	NA	NA	NA
AZW78399.1|1552240_1553191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78400.1|1553222_1554320_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZW78401.1|1554316_1555267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78402.1|1555688_1556081_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78403.1|1556086_1556863_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW78404.1|1557250_1559200_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZW78405.1|1559220_1559766_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZW78406.1|1559902_1560859_+	glutathione synthetase	NA	NA	NA	NA	NA
AZW78407.1|1560869_1561268_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZW78408.1|1561383_1561653_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZW78409.1|1561774_1563469_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZW78410.1|1563633_1563858_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78411.1|1564456_1565407_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZW78412.1|1565448_1566609_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78413.1|1566769_1567690_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZW78414.1|1567702_1568344_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZW78415.1|1568340_1569012_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZW78416.1|1569008_1569779_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZW78417.1|1569877_1570828_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78418.1|1571044_1571449_-	GFA family protein	NA	NA	NA	NA	NA
AZW78419.1|1571522_1572713_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZW78420.1|1572746_1573073_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZW78421.1|1573095_1573611_-	transporter	NA	NA	NA	NA	NA
AZW78422.1|1573669_1574896_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZW78423.1|1575073_1576204_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW78424.1|1576438_1577020_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZW78425.1|1577156_1578221_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZW78426.1|1578305_1578752_-	GFA family protein	NA	NA	NA	NA	NA
AZW78427.1|1578976_1579858_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZW78428.1|1579912_1580164_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZW78429.1|1580166_1580568_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZW78430.1|1580587_1580824_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78431.1|1580831_1581311_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW78432.1|1581496_1581976_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZW78433.1|1581978_1583169_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZW78434.1|1583173_1584226_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZW78435.1|1584362_1585385_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZW78436.1|1585476_1586313_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78437.1|1586505_1587411_+	agmatinase	NA	NA	NA	NA	NA
AZW78438.1|1587437_1588229_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78439.1|1588251_1588944_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW78440.1|1588965_1589718_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZW78441.1|1589846_1591406_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZW78442.1|1591437_1591983_+	acyl dehydratase	NA	NA	NA	NA	NA
AZW78443.1|1592120_1593377_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW78444.1|1593393_1595088_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZW78445.1|1595245_1596133_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZW78446.1|1596170_1597103_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZW80579.1|1597116_1597605_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZW78447.1|1597722_1598301_+|protease	protease	protease	NA	NA	NA	NA
AZW78448.1|1598373_1598775_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZW78449.1|1598873_1599824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	1655027	1726181	4104296	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZW78496.1|1655027_1655978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78497.1|1655999_1657220_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZW78498.1|1657405_1658818_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZW78499.1|1658881_1659949_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZW78500.1|1659945_1661436_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZW80582.1|1661445_1662390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78501.1|1662549_1663248_+	pirin family protein	NA	NA	NA	NA	NA
AZW78502.1|1663325_1664231_+	pirin family protein	NA	NA	NA	NA	NA
AZW78503.1|1664250_1665201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78504.1|1665299_1666094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZW78505.1|1666098_1667769_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW78506.1|1667892_1668942_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78507.1|1669263_1670040_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZW78508.1|1670104_1671007_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78509.1|1672300_1673104_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZW78510.1|1675797_1676184_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZW78511.1|1676199_1678290_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZW78512.1|1678341_1679295_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZW80583.1|1679309_1680197_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78513.1|1680334_1681861_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZW80584.1|1681959_1682460_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZW78514.1|1682783_1684739_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW78515.1|1684906_1686991_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78516.1|1687017_1687803_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZW78517.1|1688658_1689429_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZW78518.1|1689428_1690169_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW78519.1|1690210_1691380_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZW78520.1|1691411_1693496_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZW78521.1|1693492_1694383_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW78522.1|1694379_1695477_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW78523.1|1695499_1696789_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZW78524.1|1696800_1697826_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZW78525.1|1697822_1699880_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW78526.1|1699893_1701069_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZW78527.1|1701150_1702101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78528.1|1702159_1702933_+	oxidoreductase	NA	NA	NA	NA	NA
AZW78529.1|1702925_1704482_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZW78530.1|1704478_1705429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78531.1|1706755_1707358_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78532.1|1707597_1708299_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW78533.1|1708292_1709075_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZW78534.1|1709259_1710210_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78535.1|1710308_1711046_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZW78536.1|1711235_1711994_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW78537.1|1712040_1713030_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW78538.1|1713207_1714176_-	transporter	NA	NA	NA	NA	NA
AZW78539.1|1715715_1716684_+	AAA family ATPase	NA	NA	NA	NA	NA
AZW78540.1|1716692_1717634_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZW78541.1|1718107_1719118_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80585.1|1719108_1720623_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZW78542.1|1720619_1721966_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80586.1|1721968_1723003_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZW78543.1|1723052_1724678_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZW78544.1|1725230_1726181_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	1746972	1808320	4104296	tRNA,transposase	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZW78558.1|1746972_1747923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80592.1|1748216_1748939_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZW78559.1|1749377_1750565_-	MFS transporter	NA	NA	NA	NA	NA
AZW78560.1|1750568_1750949_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78561.1|1752668_1753640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW78562.1|1753653_1754367_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW78563.1|1754371_1755289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78564.1|1755395_1755692_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78565.1|1755790_1756741_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78566.1|1757899_1760833_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZW78567.1|1760832_1761177_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZW78568.1|1761173_1762802_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZW78569.1|1762798_1763278_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZW78570.1|1763274_1763559_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZW78571.1|1763555_1763882_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZW78572.1|1764037_1764988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78573.1|1765031_1765574_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78574.1|1765671_1766520_+	hydrolase	NA	NA	NA	NA	NA
AZW78575.1|1766512_1767019_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZW78576.1|1767015_1768017_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZW78577.1|1768029_1768824_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW78578.1|1768872_1770774_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW78579.1|1770770_1771394_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78580.1|1771520_1772645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78581.1|1772962_1774630_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZW78582.1|1774785_1775562_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZW78583.1|1775646_1776645_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78584.1|1776641_1777415_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW78585.1|1778399_1779350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78586.1|1779373_1779838_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZW78587.1|1779984_1781193_+	flavohemoprotein	NA	NA	NA	NA	NA
AZW78588.1|1781203_1781674_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW78589.1|1781792_1783082_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW78590.1|1785822_1786773_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78591.1|1786871_1787888_-	folate-binding protein	NA	NA	NA	NA	NA
AZW78592.1|1788054_1789101_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZW78593.1|1789097_1789724_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZW78594.1|1789720_1790773_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZW78595.1|1790822_1791593_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZW78596.1|1791643_1792480_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78597.1|1792675_1793416_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78598.1|1793490_1794234_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78599.1|1794895_1795669_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZW78600.1|1796806_1798096_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZW78601.1|1799706_1800954_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW78602.1|1800963_1802673_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZW78603.1|1802669_1803608_-	CoA ester lyase	NA	NA	NA	NA	NA
AZW78604.1|1803604_1804888_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW78605.1|1804891_1805374_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW78606.1|1805374_1806361_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78607.1|1806533_1807253_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78608.1|1807369_1808320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	1989505	2059157	4104296	tRNA,transposase	Staphylococcus_phage(16.67%)	56	NA	NA
AZW78741.1|1989505_1992163_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZW78742.1|1992240_1993443_-	MFS transporter	NA	NA	NA	NA	NA
AZW78743.1|1993439_1993952_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW80600.1|1994074_1994413_-	DNA-binding protein	NA	NA	NA	NA	NA
AZW78744.1|1994788_1995739_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78745.1|1995837_1996788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78746.1|1996951_1998847_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZW78747.1|1998960_1999128_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZW78748.1|1999191_1999428_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZW78749.1|1999796_2000996_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZW78750.1|2002511_2003462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78751.1|2003913_2004915_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78752.1|2005087_2005945_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW78753.1|2005941_2007204_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZW78754.1|2007304_2007679_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZW78755.1|2007727_2008939_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW78756.1|2009023_2009794_+	spermidine synthase	NA	NA	NA	NA	NA
AZW78757.1|2009907_2010672_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW80601.1|2010787_2011924_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZW78758.1|2011920_2012727_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW78759.1|2014471_2015443_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW78760.1|2015599_2016112_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZW78761.1|2016270_2017245_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78762.1|2018245_2019040_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZW80602.1|2019065_2019872_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZW78763.1|2019982_2020573_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZW78764.1|2020583_2021762_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78765.1|2021864_2022239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZW78766.1|2022491_2023823_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW78767.1|2023889_2027120_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW78768.1|2028610_2029357_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZW78769.1|2029441_2029903_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZW78770.1|2029940_2030999_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZW78771.1|2030961_2032791_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZW78772.1|2032830_2033403_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZW78773.1|2034827_2035739_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZW78774.1|2035967_2037290_+	isocitrate lyase	NA	NA	NA	NA	NA
AZW78775.1|2037649_2038285_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78776.1|2038244_2039195_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78777.1|2040065_2040938_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW78778.1|2041015_2042155_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW78779.1|2042504_2043770_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZW78780.1|2043775_2044303_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZW78781.1|2044307_2045126_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW78782.1|2045125_2045848_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW78783.1|2045869_2046184_+	ferredoxin	NA	NA	NA	NA	NA
AZW78784.1|2046180_2047350_+	CoA transferase	NA	NA	NA	NA	NA
AZW78785.1|2047380_2048256_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW78786.1|2048252_2049572_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZW78787.1|2049644_2050841_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZW78788.1|2050851_2052339_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78789.1|2054933_2055833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78790.1|2055970_2056936_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW78791.1|2057034_2057985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78792.1|2058028_2058220_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78793.1|2058206_2059157_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2070653	2120049	4104296	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZW78805.1|2070653_2071604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78806.1|2072741_2073038_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78807.1|2073212_2074565_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZW78808.1|2074707_2075724_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW80604.1|2077703_2078717_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZW78809.1|2078803_2079709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78810.1|2079865_2080210_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78811.1|2080367_2080826_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZW78812.1|2080839_2083056_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZW78813.1|2083052_2084114_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78814.1|2084142_2085117_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW78815.1|2085068_2085887_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZW78816.1|2085899_2086508_-	peptidase S16	NA	NA	NA	NA	NA
AZW78817.1|2086682_2087078_+	VOC family protein	NA	NA	NA	NA	NA
AZW78818.1|2087096_2088536_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZW78819.1|2088564_2088912_+	GFA family protein	NA	NA	NA	NA	NA
AZW78820.1|2088930_2089881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78821.1|2090533_2091484_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78822.1|2091567_2093385_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZW78823.1|2093458_2094106_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78824.1|2094118_2095048_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW78825.1|2095217_2095682_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78826.1|2095929_2096610_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78827.1|2096658_2098350_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZW78828.1|2098365_2098917_-	ATPase	NA	NA	NA	NA	NA
AZW78829.1|2098913_2099285_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW78830.1|2099397_2100234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW78831.1|2100244_2100769_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZW78832.1|2100866_2101046_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZW78833.1|2101175_2102207_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW78834.1|2102280_2102637_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZW80605.1|2102626_2103502_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZW78835.1|2103600_2104485_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78836.1|2104506_2105802_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZW78837.1|2106750_2107401_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZW80606.1|2107488_2109009_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW78838.1|2109266_2111132_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW78839.1|2112177_2113128_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78840.1|2114100_2114460_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZW78841.1|2114447_2115884_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZW78842.1|2115880_2116534_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW78843.1|2116530_2117730_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZW78844.1|2117827_2119102_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZW78845.1|2119098_2120049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2131253	2171944	4104296	protease,tRNA,transposase	Klosneuvirus(25.0%)	36	NA	NA
AZW78859.1|2131253_2132204_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78860.1|2132302_2133253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78861.1|2133212_2133626_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZW78862.1|2133910_2134210_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80608.1|2134619_2136788_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZW78863.1|2137587_2139618_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZW78864.1|2139637_2139850_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZW78865.1|2140127_2140667_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW78866.1|2140780_2142088_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZW78867.1|2142152_2143310_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZW78868.1|2143493_2144393_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZW78869.1|2144411_2145716_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZW78870.1|2145681_2146788_-	GTPase HflX	NA	NA	NA	NA	NA
AZW78871.1|2146875_2147112_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZW78872.1|2147250_2148321_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZW78873.1|2148324_2149680_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZW78874.1|2149706_2150867_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZW78875.1|2150869_2151508_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78876.1|2151509_2152814_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW78877.1|2152854_2154150_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZW78878.1|2154156_2154663_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZW78879.1|2154659_2155808_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZW78880.1|2155835_2156261_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZW78881.1|2156583_2159466_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZW78882.1|2159558_2160314_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZW78883.1|2161079_2162429_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZW78884.1|2162527_2163478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78885.1|2163576_2164527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78886.1|2164600_2165074_+	RidA family protein	NA	NA	NA	NA	NA
AZW78887.1|2165099_2166308_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZW78888.1|2166304_2167078_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZW78889.1|2167077_2167701_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZW78890.1|2167866_2168127_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZW78891.1|2168430_2169012_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78892.1|2169078_2169333_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZW78893.1|2169319_2171944_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2199727	2260933	4104296	protease,tRNA,transposase	Lake_Baikal_phage(21.43%)	53	NA	NA
AZW78913.1|2199727_2200678_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78914.1|2200878_2201688_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW78915.1|2201812_2202763_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78916.1|2202759_2203653_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZW78917.1|2203777_2203972_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZW78918.1|2203971_2204313_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZW78919.1|2204322_2206185_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZW78920.1|2206314_2206827_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZW78921.1|2206829_2207153_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZW78922.1|2207154_2207565_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZW78923.1|2207602_2208814_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZW78924.1|2208831_2209344_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZW78925.1|2209559_2210051_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZW78926.1|2210303_2212340_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZW78927.1|2212417_2213620_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW78928.1|2213670_2214399_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZW78929.1|2215956_2216907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78930.1|2217477_2217690_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78931.1|2217707_2218439_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78932.1|2218473_2219115_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW78933.1|2219107_2219824_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW78934.1|2221988_2222765_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW78935.1|2222786_2223944_-	thiolase	NA	NA	NA	NA	NA
AZW78936.1|2223940_2224372_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78937.1|2224368_2225172_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW78938.1|2225185_2225641_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW78939.1|2225653_2226625_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW78940.1|2226690_2227914_-	CoA transferase	NA	NA	NA	NA	NA
AZW78941.1|2228141_2229092_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW78942.1|2229215_2231669_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZW78943.1|2231857_2233162_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZW78944.1|2233266_2233920_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZW78945.1|2233922_2235233_-	trigger factor	NA	NA	NA	NA	NA
AZW78946.1|2235411_2235990_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZW78947.1|2236101_2236302_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZW78948.1|2236647_2237214_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZW78949.1|2237297_2237501_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZW78950.1|2237807_2238128_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78951.1|2238169_2238451_-	hypothetical protein	NA	NA	NA	NA	NA
AZW78952.1|2238525_2239782_-	autotransporter Phg	NA	NA	NA	NA	NA
AZW78953.1|2240164_2240494_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW78954.1|2242065_2242887_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZW78955.1|2242886_2244026_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZW78956.1|2244032_2244929_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZW78957.1|2244925_2246851_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZW78958.1|2247210_2249823_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW78959.1|2249875_2252176_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZW78960.1|2252172_2253381_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZW78961.1|2253642_2254017_+	hypothetical protein	NA	NA	NA	NA	NA
AZW78962.1|2254013_2254964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW78963.1|2255062_2257057_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZW78964.1|2257116_2258082_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZW78965.1|2258071_2260933_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
>prophage 21
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2541027	2605243	4104296	protease,tRNA,transposase	Salmonella_phage(16.67%)	60	NA	NA
AZW79199.1|2541027_2542515_-|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
AZW79200.1|2542552_2543614_-	siderophore-interacting protein	NA	NA	NA	NA	NA
AZW79201.1|2543610_2544111_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79202.1|2544123_2544723_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AZW79203.1|2544719_2545220_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79204.1|2545221_2546451_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AZW80622.1|2546640_2546880_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AZW79205.1|2547062_2547815_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AZW79206.1|2547816_2548752_-	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AZW79207.1|2548833_2549820_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AZW79208.1|2549819_2550878_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AZW79209.1|2550934_2551117_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AZW80623.1|2551168_2551762_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AZW79210.1|2551870_2552470_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZW79211.1|2552466_2553177_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW79212.1|2553178_2554006_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AZW79213.1|2555822_2557064_-	MFS transporter	NA	NA	NA	NA	NA
AZW79214.1|2557075_2557849_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZW79215.1|2557875_2558826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79216.1|2558924_2559707_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW79217.1|2559795_2561022_-	transporter	NA	NA	NA	NA	NA
AZW79218.1|2561747_2563133_+	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZW79219.1|2563151_2563757_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW79220.1|2563753_2565610_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZW79221.1|2565606_2566407_+	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZW79222.1|2566421_2567615_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZW79223.1|2567682_2568657_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW79224.1|2568779_2570003_+	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZW79225.1|2570113_2572318_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW79226.1|2572612_2573272_+	antibiotic resistance protein	NA	NA	NA	NA	NA
AZW79227.1|2573279_2573486_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79228.1|2573824_2574580_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZW79229.1|2574595_2574757_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79230.1|2574850_2575366_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZW79231.1|2575638_2575956_+	virulence factor	NA	NA	NA	NA	NA
AZW79232.1|2576143_2576392_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79233.1|2576670_2578026_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZW79234.1|2578072_2579452_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZW79235.1|2579514_2580147_-	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZW80624.1|2580146_2582507_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZW79236.1|2582548_2583508_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZW79237.1|2583494_2584181_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZW79238.1|2584177_2584510_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZW79239.1|2584625_2585576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79240.1|2585674_2586625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79241.1|2586621_2588688_-	cation acetate symporter	NA	NA	NA	NA	NA
AZW79242.1|2588687_2588960_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZW79243.1|2589654_2589744_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZW79244.1|2589743_2591528_+	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZW79245.1|2591551_2593717_+	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZW79246.1|2593727_2594327_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZW79247.1|2597148_2597844_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZW79248.1|2597852_2598803_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79249.1|2598901_2600143_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79250.1|2600292_2601273_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79251.1|2601471_2602728_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZW79252.1|2602930_2603356_+	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZW79253.1|2603397_2603760_-	cytochrome	NA	NA	NA	NA	NA
AZW79254.1|2603772_2604126_-	cytochrome C	NA	NA	NA	NA	NA
AZW79255.1|2604292_2605243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2684920	2725589	4104296	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
AZW79323.1|2684920_2685871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79324.1|2685981_2686164_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79325.1|2686263_2686860_-	lipoprotein	NA	NA	NA	NA	NA
AZW79326.1|2687043_2688135_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79327.1|2688634_2689045_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79328.1|2689103_2689445_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZW79329.1|2689450_2691868_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW79330.1|2691880_2692903_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZW79331.1|2692977_2693337_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZW79332.1|2693352_2693550_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZW79333.1|2693885_2694836_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79334.1|2694822_2695011_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79335.1|2695030_2695480_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZW79336.1|2695476_2696427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79337.1|2696537_2697986_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW79338.1|2698100_2698382_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79339.1|2698485_2699436_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79340.1|2699680_2700394_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW79341.1|2700516_2700744_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW79342.1|2701038_2701677_-	DedA family protein	NA	NA	NA	NA	NA
AZW79343.1|2701749_2702820_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZW79344.1|2702816_2703767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79345.1|2704182_2704707_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZW79346.1|2704710_2704980_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79347.1|2705178_2706240_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW79348.1|2706323_2707958_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZW79349.1|2707959_2708763_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW79350.1|2708791_2709751_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW79351.1|2709754_2711269_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79352.1|2711305_2712310_-	peptidase M20	NA	NA	NA	NA	NA
AZW79353.1|2712741_2713212_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZW79354.1|2713247_2713859_-	LysE family translocator	NA	NA	NA	NA	NA
AZW79355.1|2713889_2714513_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW79356.1|2714593_2716126_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW79357.1|2716160_2717402_-	MFS transporter	NA	NA	NA	NA	NA
AZW79358.1|2717445_2718477_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZW79359.1|2718473_2719643_-	amine oxidase	NA	NA	NA	NA	NA
AZW79360.1|2719636_2720317_-	anti-sigma factor	NA	NA	NA	NA	NA
AZW79361.1|2720478_2721321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79362.1|2721483_2722455_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW79363.1|2722626_2723505_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW79364.1|2723527_2724598_-	FUSC family protein	NA	NA	NA	NA	NA
AZW79365.1|2724638_2725589_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2781054	2853924	4104296	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZW79409.1|2781054_2781471_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZW79410.1|2781581_2782214_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZW79411.1|2782242_2782686_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZW79412.1|2782707_2783799_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79413.1|2783853_2784654_-	aldolase	NA	NA	NA	NA	NA
AZW79414.1|2784789_2785410_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW79415.1|2785549_2786023_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79416.1|2787162_2788113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79417.1|2788109_2795771_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZW79418.1|2796011_2800058_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZW79419.1|2800370_2800952_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW79420.1|2800948_2802247_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW79421.1|2802326_2803355_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW79422.1|2803278_2803629_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79423.1|2803615_2804566_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79424.1|2804562_2805513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79425.1|2805829_2806435_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZW79426.1|2806488_2807802_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZW79427.1|2807876_2808347_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZW79428.1|2808346_2809135_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZW79429.1|2809145_2810798_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZW79430.1|2810885_2811836_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80634.1|2812997_2813504_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZW79431.1|2813500_2814265_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZW79432.1|2814280_2814565_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZW79433.1|2814629_2815619_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZW79434.1|2815790_2816720_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZW79435.1|2816691_2817378_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZW79436.1|2817411_2817957_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZW79437.1|2818001_2819267_+	peptidase M48	NA	NA	NA	NA	NA
AZW79438.1|2819263_2820166_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZW79439.1|2821347_2822292_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW79440.1|2822386_2823904_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79441.1|2823945_2825574_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW79442.1|2825681_2826563_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79443.1|2829675_2830050_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZW79444.1|2830074_2830413_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZW79445.1|2830456_2832091_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZW79446.1|2832129_2833476_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZW80635.1|2833583_2835005_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZW79447.1|2835074_2835659_-	nitroreductase	NA	NA	NA	NA	NA
AZW79448.1|2835761_2836712_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79449.1|2836846_2837953_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79450.1|2837963_2839061_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZW79451.1|2839205_2840411_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZW79452.1|2840417_2840939_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZW79453.1|2840935_2841427_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZW79454.1|2841423_2841675_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZW79455.1|2841655_2842141_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZW79456.1|2842276_2845738_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79457.1|2845734_2846640_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZW79458.1|2846649_2847081_-	lipoprotein	NA	NA	NA	NA	NA
AZW80636.1|2847327_2847831_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZW79459.1|2847842_2849309_+	MFS transporter	NA	NA	NA	NA	NA
AZW79460.1|2849383_2850259_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80637.1|2850255_2851263_-	biotin synthase	NA	NA	NA	NA	NA
AZW79461.1|2851730_2852036_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW79462.1|2852126_2852717_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79463.1|2852907_2853924_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2857067	2923877	4104296	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZW79466.1|2857067_2858018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79467.1|2858116_2859067_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79468.1|2859063_2859858_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZW79469.1|2859889_2860594_-	oxidoreductase	NA	NA	NA	NA	NA
AZW79470.1|2860668_2861469_-	SURF1 family protein	NA	NA	NA	NA	NA
AZW79471.1|2861465_2861873_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZW79472.1|2861869_2862511_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZW79473.1|2862503_2864525_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW79474.1|2865764_2867096_+	MFS transporter	NA	NA	NA	NA	NA
AZW79475.1|2867092_2868043_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79476.1|2869749_2870055_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79477.1|2870723_2871062_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW79478.1|2875614_2876217_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79479.1|2876313_2877603_+	MFS transporter	NA	NA	NA	NA	NA
AZW79480.1|2877660_2878392_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZW79481.1|2878388_2879192_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZW79482.1|2879188_2880277_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW79483.1|2880273_2881203_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW79484.1|2881351_2882497_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79485.1|2882518_2883469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79486.1|2883799_2887621_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW79487.1|2887777_2888446_-	lipoprotein	NA	NA	NA	NA	NA
AZW79488.1|2888450_2890124_-	MCE family protein	NA	NA	NA	NA	NA
AZW79489.1|2890142_2891462_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZW79490.1|2891466_2893818_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZW80638.1|2893837_2896006_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZW79491.1|2896002_2901192_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZW79492.1|2901281_2901596_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZW79493.1|2901823_2902069_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZW79494.1|2902163_2902682_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZW79495.1|2902781_2903987_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZW79496.1|2904102_2905500_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZW79497.1|2905616_2906195_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZW79498.1|2906267_2907659_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZW79499.1|2907826_2908777_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79500.1|2909057_2909678_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZW79501.1|2909674_2910088_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZW79502.1|2910084_2911128_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZW79503.1|2911183_2911372_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79504.1|2911381_2912146_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZW79505.1|2912236_2912893_+	adenylate kinase	NA	NA	NA	NA	NA
AZW79506.1|2912984_2913743_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW79507.1|2913768_2915370_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZW79508.1|2915570_2916575_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZW79509.1|2916675_2916939_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZW79510.1|2917056_2917833_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZW79511.1|2918423_2919374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79512.1|2921757_2922870_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZW79513.1|2922926_2923877_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	2954263	2993452	4104296	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZW79542.1|2954263_2955214_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79543.1|2955200_2955446_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79544.1|2955334_2956231_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZW79545.1|2958508_2960734_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZW79546.1|2960898_2961987_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZW79547.1|2961943_2962597_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW79548.1|2962644_2963442_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79549.1|2963973_2964924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79550.1|2965004_2966153_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW79551.1|2966209_2967160_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79552.1|2967146_2967365_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79553.1|2967258_2967564_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW79554.1|2967592_2968027_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW79555.1|2968028_2969273_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW79556.1|2969269_2969980_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW80640.1|2969994_2970906_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW79557.1|2971268_2971673_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79558.1|2971669_2972128_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79559.1|2972134_2973043_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80641.1|2973039_2973906_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW79560.1|2973892_2974720_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW79561.1|2974730_2975858_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZW79562.1|2976935_2978174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79563.1|2978215_2979478_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79564.1|2979484_2980237_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW79565.1|2980288_2980474_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80642.1|2980749_2981214_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZW79566.1|2981245_2981905_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZW79567.1|2982049_2984158_+	AsmA family protein	NA	NA	NA	NA	NA
AZW79568.1|2984154_2985105_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79569.1|2985208_2985829_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW80643.1|2985932_2986673_+	oxidoreductase	NA	NA	NA	NA	NA
AZW79570.1|2987807_2988932_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79571.1|2988977_2989346_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79572.1|2989587_2990538_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79573.1|2991573_2992116_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79574.1|2992320_2992515_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79575.1|2992501_2993452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	3182371	3243400	4104296	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZW79726.1|3182371_3183322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79727.1|3183330_3183879_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZW79728.1|3183875_3184484_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW79729.1|3184666_3185137_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW79730.1|3185143_3186403_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW79731.1|3186455_3187268_-	oxidoreductase	NA	NA	NA	NA	NA
AZW79732.1|3187382_3187937_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW79733.1|3187946_3188936_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW79734.1|3189115_3189835_-	VOC family protein	NA	NA	NA	NA	NA
AZW79735.1|3189851_3192587_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZW79736.1|3192766_3193753_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZW79737.1|3193794_3194289_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZW79738.1|3194400_3195324_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZW79739.1|3195552_3196737_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZW79740.1|3196925_3198152_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZW79741.1|3198156_3198978_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZW79742.1|3198990_3199941_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZW79743.1|3199937_3201344_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZW79744.1|3201340_3202414_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZW79745.1|3202410_3203604_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZW79746.1|3203600_3205133_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZW79747.1|3205129_3206299_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZW79748.1|3206288_3209126_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
AZW80659.1|3209122_3210823_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZW79749.1|3210849_3211128_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZW79750.1|3211127_3212222_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZW79751.1|3212230_3212722_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZW79752.1|3213461_3215270_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZW79753.1|3215309_3216389_-	dihydroorotase	NA	NA	NA	NA	NA
AZW79754.1|3216385_3217579_-	amidohydrolase	NA	NA	NA	NA	NA
AZW79755.1|3217728_3218007_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZW79756.1|3218335_3218728_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80660.1|3225452_3225929_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW79757.1|3226081_3227194_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZW79758.1|3227261_3227822_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZW79759.1|3227845_3228178_-	cytochrome C	NA	NA	NA	NA	NA
AZW79760.1|3228161_3229850_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZW79761.1|3229969_3230758_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZW79762.1|3231465_3232416_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79763.1|3232860_3233172_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZW79764.1|3233171_3233702_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79765.1|3233864_3234815_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79766.1|3234913_3235864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79767.1|3236153_3236618_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZW79768.1|3236632_3238138_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZW79769.1|3238391_3239999_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW79770.1|3240054_3240960_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW79771.1|3241400_3242351_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79772.1|3242449_3243400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	3265125	3303540	4104296	transposase,holin	Tupanvirus(16.67%)	36	NA	NA
AZW79794.1|3265125_3265461_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW79795.1|3265460_3266303_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZW79796.1|3266401_3267352_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79797.1|3267416_3268388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79798.1|3268451_3269471_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZW80663.1|3269472_3270846_-	MFS transporter	NA	NA	NA	NA	NA
AZW79799.1|3271123_3271804_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZW79800.1|3271816_3273943_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZW79801.1|3273939_3275034_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZW79802.1|3275048_3276308_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW79803.1|3276327_3278052_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZW79804.1|3278290_3279043_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZW79805.1|3279181_3280132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80664.1|3280444_3281923_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZW79806.1|3281929_3283039_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZW79807.1|3283050_3283731_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW79808.1|3283752_3284508_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW80665.1|3284643_3285528_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW79809.1|3285615_3286197_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79810.1|3286289_3286412_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79811.1|3286457_3286757_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW80666.1|3286908_3287334_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79812.1|3289540_3290044_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW79813.1|3290059_3291010_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79814.1|3290996_3291194_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79815.1|3291537_3292311_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79816.1|3292443_3293454_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW79817.1|3293605_3295261_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW79818.1|3295315_3295657_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW79819.1|3295670_3297110_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW79820.1|3297242_3298058_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79821.1|3298076_3298265_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79822.1|3298251_3299202_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79823.1|3300589_3301537_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79824.1|3301763_3302504_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79825.1|3302589_3303540_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	3378947	3432688	4104296	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZW79877.1|3378947_3379898_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79878.1|3380302_3380947_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZW79879.1|3380971_3381556_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZW79880.1|3381656_3382274_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZW79881.1|3382276_3383992_-	urease subunit alpha	NA	NA	NA	NA	NA
AZW79882.1|3383988_3384297_-	urease subunit beta	NA	NA	NA	NA	NA
AZW79883.1|3384313_3384949_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZW79884.1|3384975_3385278_-	urease subunit gamma	NA	NA	NA	NA	NA
AZW79885.1|3385378_3386233_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZW79886.1|3386814_3387087_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW79887.1|3387504_3387912_-	GFA family protein	NA	NA	NA	NA	NA
AZW79888.1|3388281_3389076_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79889.1|3389176_3390412_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW79890.1|3390480_3391497_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW79891.1|3391493_3392885_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW79892.1|3392881_3394078_+	MFS transporter	NA	NA	NA	NA	NA
AZW79893.1|3394074_3395613_-	SpoVR family protein	NA	NA	NA	NA	NA
AZW79894.1|3395609_3396869_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79895.1|3398809_3399760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79896.1|3400526_3401621_-	CoA transferase	NA	NA	NA	NA	NA
AZW79897.1|3401613_3402948_-	CoA ligase	NA	NA	NA	NA	NA
AZW79898.1|3402901_3403585_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79899.1|3403610_3404774_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW79900.1|3404770_3405772_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW79901.1|3405771_3406644_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW79902.1|3406640_3407390_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZW79903.1|3407386_3408178_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZW79904.1|3408174_3409314_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79905.1|3409622_3410375_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW79906.1|3410408_3411191_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW79907.1|3411194_3411584_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW79908.1|3412723_3413587_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW79909.1|3413622_3414711_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79910.1|3414707_3415658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79911.1|3415644_3416013_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79912.1|3416011_3418990_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79913.1|3419916_3420795_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZW79914.1|3422743_3423694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79915.1|3423690_3424158_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZW79916.1|3424200_3424971_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW79917.1|3424991_3425792_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZW79918.1|3425802_3427212_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZW79919.1|3427306_3428092_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW79920.1|3428331_3429348_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW79921.1|3429455_3429848_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW79922.1|3429985_3430666_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZW79923.1|3430670_3431669_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW79924.1|3431737_3432688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	3438843	3498144	4104296	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZW79928.1|3438843_3440607_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZW79929.1|3440718_3441597_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZW79930.1|3441709_3442525_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZW79931.1|3442528_3442780_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZW79932.1|3442864_3443881_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW79933.1|3444211_3444433_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79934.1|3446793_3447711_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW79935.1|3448208_3449417_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW79936.1|3449496_3451068_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW79937.1|3451185_3452121_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZW79938.1|3452309_3453254_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZW79939.1|3453322_3453538_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79940.1|3453821_3459539_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZW79941.1|3459544_3460672_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZW79942.1|3460727_3461354_+	aminotransferase	NA	NA	NA	NA	NA
AZW79943.1|3461625_3462642_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW79944.1|3462737_3463448_-	oxidoreductase	NA	NA	NA	NA	NA
AZW80670.1|3463444_3464434_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW79945.1|3464565_3466161_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZW79946.1|3466163_3466901_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79947.1|3467056_3467929_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZW79948.1|3468197_3469418_+	MFS transporter	NA	NA	NA	NA	NA
AZW79949.1|3469414_3470074_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW79950.1|3470145_3470778_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZW79951.1|3470807_3471326_+	flavin reductase	NA	NA	NA	NA	NA
AZW79952.1|3471336_3472446_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW79953.1|3472492_3473347_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZW79954.1|3473348_3474251_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79955.1|3475473_3476424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79956.1|3478181_3479171_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79957.1|3479346_3480135_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZW79958.1|3480131_3481163_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZW79959.1|3481181_3481745_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZW79960.1|3481800_3483321_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZW79961.1|3483584_3484289_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW79962.1|3484296_3485034_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZW79963.1|3485139_3485514_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZW79964.1|3485556_3486846_+	hypothetical protein	NA	NA	NA	NA	NA
AZW79965.1|3486842_3488012_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZW79966.1|3488008_3488848_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZW79967.1|3488907_3489843_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZW79968.1|3489855_3490806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79969.1|3490904_3491867_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZW79970.1|3491898_3492258_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZW79971.1|3492382_3493285_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZW79972.1|3493286_3495059_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZW79973.1|3495093_3495870_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW79974.1|3497193_3498144_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	3513082	3571155	4104296	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZW79986.1|3513082_3514033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW79987.1|3514161_3515295_-	peptidase	NA	NA	NA	NA	NA
AZW79988.1|3515338_3516244_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW79989.1|3516246_3517947_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZW79990.1|3517943_3518864_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW79991.1|3518871_3519849_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW79992.1|3519907_3520942_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW79993.1|3522916_3523153_-	hypothetical protein	NA	NA	NA	NA	NA
AZW79994.1|3523279_3524143_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZW79995.1|3524231_3525053_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW79996.1|3525132_3525870_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW79997.1|3525866_3526859_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZW79998.1|3526972_3527635_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW79999.1|3527679_3528828_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW80000.1|3531151_3532102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80001.1|3532442_3533393_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80002.1|3533491_3534442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80003.1|3534738_3535236_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80004.1|3535278_3537054_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZW80673.1|3537100_3537928_+	copper resistance protein B	NA	NA	NA	NA	NA
AZW80005.1|3537934_3538669_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW80006.1|3539838_3540633_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW80007.1|3540922_3541513_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW80008.1|3541546_3542875_-	amidase	NA	NA	NA	NA	NA
AZW80009.1|3542949_3544095_-	transporter	NA	NA	NA	NA	NA
AZW80010.1|3544206_3545205_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80011.1|3545167_3545602_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZW80012.1|3547118_3548003_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW80013.1|3547999_3549205_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW80014.1|3549201_3550062_-	endonuclease	NA	NA	NA	NA	NA
AZW80015.1|3550174_3551965_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZW80016.1|3552005_3552671_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZW80017.1|3552671_3552980_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZW80674.1|3553145_3554432_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80018.1|3555865_3556816_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80019.1|3558767_3559982_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZW80020.1|3560087_3561077_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZW80021.1|3561073_3561682_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZW80022.1|3561694_3562324_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZW80023.1|3562320_3562941_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZW80024.1|3562972_3563764_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZW80025.1|3564606_3565071_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZW80026.1|3565089_3566016_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZW80027.1|3566069_3567356_-	cytochrome c	NA	NA	NA	NA	NA
AZW80028.1|3568286_3569159_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZW80029.1|3569155_3570106_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZW80030.1|3570204_3571155_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP025346	Bordetella pertussis strain H742 chromosome, complete genome	4104296	4003364	4068276	4104296	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZW80416.1|4003364_4003850_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80417.1|4004068_4005049_+	protein BugT	NA	NA	NA	NA	NA
AZW80418.1|4005315_4006125_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZW80419.1|4006164_4006845_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZW80420.1|4006838_4007297_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZW80421.1|4007308_4007671_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZW80422.1|4007753_4008437_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZW80423.1|4008492_4008801_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZW80424.1|4008819_4009134_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZW80425.1|4009130_4011605_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZW80426.1|4011612_4013004_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZW80427.1|4013000_4013186_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZW80428.1|4013164_4013866_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZW80429.1|4013862_4014684_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZW80696.1|4014664_4015789_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZW80430.1|4015781_4016801_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZW80431.1|4017006_4018041_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW80697.1|4018141_4018933_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW80432.1|4019015_4019390_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZW80433.1|4019367_4020777_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZW80434.1|4020769_4022152_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZW80435.1|4022486_4024091_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW80436.1|4024126_4025140_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW80437.1|4025150_4026077_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW80438.1|4026467_4027418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80439.1|4027587_4028814_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZW80440.1|4029013_4029880_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZW80441.1|4029872_4030835_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZW80442.1|4030935_4031886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80443.1|4031984_4032935_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80444.1|4033033_4033984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW80445.1|4033980_4035474_-	RND transporter	NA	NA	NA	NA	NA
AZW80446.1|4035470_4038578_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZW80447.1|4038574_4041643_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZW80448.1|4041639_4042890_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZW80449.1|4043070_4043832_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZW80450.1|4043864_4044515_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZW80451.1|4044517_4045357_-	prepilin peptidase	NA	NA	NA	NA	NA
AZW80452.1|4045597_4046341_+	hypothetical protein	NA	NA	NA	NA	NA
AZW80453.1|4046423_4046771_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZW80454.1|4046868_4047711_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZW80455.1|4047755_4048643_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZW80456.1|4048669_4048858_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZW80457.1|4048955_4050413_+	MFS transporter	NA	NA	NA	NA	NA
AZW80458.1|4050399_4051926_+	glycerol kinase	NA	NA	NA	NA	NA
AZW80459.1|4051944_4052412_-	hypothetical protein	NA	NA	NA	NA	NA
AZW80460.1|4052411_4053434_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW80461.1|4053554_4054295_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZW80462.1|4054349_4055450_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW80463.1|4055451_4056642_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW80464.1|4056761_4057778_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZW80465.1|4058096_4058768_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZW80466.1|4058764_4059673_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW80467.1|4059884_4060532_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZW80468.1|4064383_4065460_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZW80469.1|4065470_4066280_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW80470.1|4066369_4067143_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW80471.1|4067325_4068276_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
