The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	0	122073	4100074	tRNA,transposase,protease	Planktothrix_phage(16.67%)	110	NA	NA
AZW73519.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZW73520.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZW73521.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZW73522.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW73523.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZW73524.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZW73525.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZW73526.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZW73527.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZW73528.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZW73529.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZW73530.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZW73531.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZW73532.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZW76894.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZW73533.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW73534.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZW73535.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW73536.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73537.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZW73538.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73539.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZW73540.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZW76895.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73541.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW73542.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW73543.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73544.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZW73545.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZW73546.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW73547.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZW73548.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW73549.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZW73550.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZW73551.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZW73552.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZW73553.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73554.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW73555.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW73556.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZW73557.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZW73558.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZW73559.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73560.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZW73561.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZW73562.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZW73563.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW73564.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW73565.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW73566.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73567.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW73568.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW73569.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73570.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73571.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZW73572.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZW73573.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZW73574.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW73575.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73576.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73577.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZW73578.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZW73579.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW73580.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZW73581.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76896.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73582.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZW73583.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76897.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73584.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZW73585.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZW73586.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW73587.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZW73588.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZW73589.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZW73590.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZW73591.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZW73592.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW73593.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZW73594.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZW73595.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZW73596.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73597.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZW73598.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZW73599.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW73600.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZW73601.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZW73602.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW73603.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZW73604.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZW73605.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZW73606.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZW73607.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZW73608.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZW73609.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZW73610.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZW73611.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73612.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW73613.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZW73614.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW73615.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW76898.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZW73616.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76899.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW73617.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW73618.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW73619.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW73620.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZW73621.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZW73622.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	164894	225405	4100074	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZW73653.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73654.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73655.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZW73656.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZW73657.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZW73658.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZW73659.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76905.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZW73660.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73661.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZW73662.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZW73663.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW73664.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZW73665.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73666.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZW73667.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZW73668.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZW73669.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZW73670.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZW73671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZW76906.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZW73672.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZW73673.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZW73674.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW73675.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73676.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZW73677.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW73678.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZW73679.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZW73680.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZW73681.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73682.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZW73683.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73684.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73685.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZW73686.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZW73687.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZW73688.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZW73689.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZW73690.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW73691.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW76907.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73692.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW73693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZW73694.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW73695.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZW73696.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZW73697.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZW73698.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZW73699.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZW73700.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	233337	286925	4100074	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
AZW73708.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73709.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73710.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73711.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW73712.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZW73713.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73714.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW73715.1|241550_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AZW73716.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73717.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZW73718.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZW73719.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZW73720.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZW73721.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZW73722.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZW73723.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZW73724.1|253600_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76908.1|254381_255626_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZW73725.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZW73726.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZW73727.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
AZW73728.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZW73729.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73730.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW73731.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
AZW73732.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73733.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73734.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73735.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW73736.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZW73737.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZW73738.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZW73739.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZW73740.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZW73741.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW73742.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73743.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73744.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZW73745.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
AZW73746.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZW73747.1|279656_280268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW73748.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
AZW73749.1|281300_282683_-	cytochrome b	NA	NA	NA	NA	NA
AZW73750.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZW73751.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZW73752.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZW76909.1|284841_285978_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZW73753.1|285974_286925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	390858	448367	4100074	transposase	Orpheovirus(14.29%)	50	NA	NA
AZW73852.1|390858_391809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73853.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
AZW73854.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZW73855.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
AZW73856.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73857.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
AZW73858.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73859.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76915.1|400019_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZW73860.1|401158_402142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73861.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73862.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW73863.1|403585_404827_-	CoA transferase	NA	NA	NA	NA	NA
AZW73864.1|404931_406638_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW73865.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73866.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
AZW73867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73868.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76916.1|411331_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73869.1|412387_413338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73870.1|413426_414341_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW73871.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
AZW73872.1|415086_416010_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZW73873.1|416015_416471_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73874.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZW76917.1|417490_417799_+	GtrA family protein	NA	NA	NA	NA	NA
AZW73875.1|417758_419378_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZW73876.1|419374_420433_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZW73877.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW73878.1|421149_422127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73879.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZW73880.1|423524_425036_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW76918.1|425051_426365_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZW73881.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
AZW73882.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZW73883.1|430323_431274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW73884.1|431405_431804_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZW73885.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
AZW73886.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZW73887.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW73888.1|436406_436925_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZW73889.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZW73890.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
AZW73891.1|439211_439997_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW73892.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW73893.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW73894.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW73895.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW73896.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW73897.1|447416_448367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	620802	721266	4100074	tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZW74049.1|620802_621753_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74050.1|622451_622835_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74051.1|622892_623495_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZW76924.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
AZW76925.1|624047_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74052.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZW74053.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
AZW74054.1|627088_628138_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZW74055.1|628285_628864_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZW74056.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZW74057.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZW74058.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74059.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZW74060.1|636791_637742_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74061.1|637840_638641_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74062.1|638702_639086_+	thioredoxin	NA	NA	NA	NA	NA
AZW74063.1|639097_640531_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZW74064.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZW76926.1|641069_641738_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW74065.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZW74066.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZW74067.1|643203_643626_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZW74068.1|643642_644743_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW74069.1|644839_646357_-	peptidase	NA	NA	NA	NA	NA
AZW74070.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZW74071.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZW74072.1|648256_649351_-	porin	NA	NA	NA	NA	NA
AZW74073.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76927.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74074.1|651694_652054_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74075.1|652435_653473_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74076.1|653789_655130_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZW74077.1|655139_655592_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74078.1|655688_656870_+	monooxygenase	NA	NA	NA	NA	NA
AZW74079.1|656929_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZW74080.1|658001_658241_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW74081.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZW74082.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZW74083.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZW74084.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZW74085.1|662104_663073_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZW74086.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZW74087.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZW74088.1|666170_667121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74089.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZW74090.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZW74091.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
AZW74092.1|669838_670594_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76928.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW74093.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW74094.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZW74095.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZW74096.1|673907_675650_+	sulfite reductase	NA	NA	NA	NA	NA
AZW74097.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZW74098.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW74099.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74100.1|678340_679291_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74101.1|679542_679755_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76929.1|679820_680432_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZW74102.1|680911_681232_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74103.1|681224_681923_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74104.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74105.1|682176_683127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76930.1|683802_684252_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZW74106.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZW74107.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZW76931.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZW74108.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZW74109.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZW74110.1|689422_690373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74111.1|690390_691038_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZW74112.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74113.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZW74114.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74115.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZW74116.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZW74117.1|692832_693255_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74118.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZW74119.1|694017_694536_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZW74120.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZW74121.1|694892_695183_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZW74122.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZW74123.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74124.1|698257_698791_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZW74125.1|698787_699177_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZW74126.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZW74127.1|703130_703547_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74128.1|703765_704029_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZW74129.1|704028_704841_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74130.1|704845_705088_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74131.1|705066_705618_+	lysozyme	NA	NA	NA	NA	NA
AZW74132.1|705599_706133_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZW74133.1|706129_706411_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74134.1|706753_706954_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74135.1|706960_707632_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZW74136.1|707987_708674_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW74137.1|708654_709227_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW74138.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZW74139.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW74140.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
AZW74141.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
AZW74142.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZW74143.1|713672_714989_+	protein TolB	NA	NA	NA	NA	NA
AZW74144.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZW74145.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZW74146.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW74147.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZW74148.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74149.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW74150.1|720110_720329_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74151.1|720315_721266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	748191	821353	4100074	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZW74172.1|748191_749142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74173.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZW74174.1|750927_752193_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZW74175.1|752350_753301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74176.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZW76933.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW74177.1|756714_757686_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74178.1|757817_758342_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZW74179.1|758301_759252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74180.1|759473_761669_-	DNA methylase	NA	NA	NA	NA	NA
AZW74181.1|761741_762149_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW74182.1|762271_763222_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74183.1|763337_763781_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW74184.1|763843_764638_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW74185.1|764803_765940_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZW74186.1|766010_767144_-	GTPase ObgE	NA	NA	NA	NA	NA
AZW74187.1|767293_767554_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZW74188.1|767587_767899_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZW74189.1|768323_769472_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZW74190.1|769586_770552_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZW74191.1|770820_771687_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74192.1|771817_773866_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW74193.1|773883_775881_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW74194.1|775915_777253_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW74195.1|777515_779369_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74196.1|779423_780905_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW74197.1|780920_781508_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZW76934.1|781590_781770_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74198.1|781956_787077_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZW74199.1|787154_789293_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZW74200.1|789289_790612_+	protein CyaD	NA	NA	NA	NA	NA
AZW74201.1|790613_792038_+	protein CyaE	NA	NA	NA	NA	NA
AZW74202.1|792128_793037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74203.1|793101_794016_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW74204.1|794853_795537_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW74205.1|795553_796297_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZW74206.1|796326_797187_+	aminotransferase	NA	NA	NA	NA	NA
AZW74207.1|797194_797761_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74208.1|797849_798806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW74209.1|798850_799603_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW74210.1|799599_801345_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZW74211.1|801429_802164_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74212.1|802480_803503_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZW74213.1|803518_804241_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74214.1|804385_805393_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZW74215.1|805433_806966_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZW74216.1|806962_808081_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZW74217.1|808077_808860_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW74218.1|808871_809735_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZW76935.1|809753_810851_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74219.1|810919_811846_-	VOC family protein	NA	NA	NA	NA	NA
AZW74220.1|811880_813575_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW74221.1|813774_814710_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZW74222.1|814815_815766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74223.1|815864_816521_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZW74224.1|816668_819377_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZW74225.1|819386_820406_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZW74226.1|820402_821353_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	854100	903342	4100074	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZW74255.1|854100_855051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76936.1|855023_855623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74256.1|855624_856059_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW74257.1|856055_856490_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74258.1|856473_857277_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZW74259.1|857293_858109_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZW74260.1|858105_858921_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZW74261.1|859067_859769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74262.1|859796_861755_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZW74263.1|861837_862788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74264.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW74265.1|863800_864907_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW74266.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZW74267.1|868029_869523_+	RND transporter	NA	NA	NA	NA	NA
AZW74268.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW74269.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
AZW74270.1|870887_871535_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW76937.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW74271.1|873683_875696_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW74272.1|875721_877056_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW74273.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW74274.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZW74275.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW74276.1|881432_882434_-	peptidase M14	NA	NA	NA	NA	NA
AZW74277.1|882467_883709_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW74278.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZW74279.1|884790_885615_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW76938.1|885811_886828_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW74280.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW74281.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW74282.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW74283.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW74284.1|893617_894418_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74285.1|894440_896672_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZW74286.1|897459_897906_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZW74287.1|897927_898674_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZW74288.1|898817_899795_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZW74289.1|900428_901040_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZW74290.1|901033_902251_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZW74291.1|902391_903342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	912954	977894	4100074	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZW74300.1|912954_913905_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74301.1|913901_915752_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZW74302.1|916132_916792_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZW74303.1|916879_917032_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74304.1|917140_917308_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74305.1|917319_918000_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZW74306.1|918281_918998_+	flagellar brake protein	NA	NA	NA	NA	NA
AZW74307.1|919012_920314_-	phospholipase	NA	NA	NA	NA	NA
AZW74308.1|922458_925347_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZW74309.1|925570_926923_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW74310.1|926951_927473_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZW74311.1|927469_928924_+	carboxylase	NA	NA	NA	NA	NA
AZW74312.1|928958_929207_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74313.1|929312_930188_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74314.1|930213_931269_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74315.1|931281_932073_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74316.1|932105_933476_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZW74317.1|934652_935603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74318.1|935655_935877_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74319.1|936036_936249_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74320.1|936368_937487_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW74321.1|937583_937799_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74322.1|937992_938244_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74323.1|938356_939307_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74324.1|939303_939687_-	ferredoxin	NA	NA	NA	NA	NA
AZW74325.1|939741_941559_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZW76940.1|941705_942533_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZW74326.1|942578_943559_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW74327.1|943555_943768_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74328.1|943764_944946_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZW74329.1|945109_945844_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZW74330.1|945845_948458_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZW74331.1|948593_950507_-	S9 family peptidase	NA	NA	NA	NA	NA
AZW74332.1|951122_951533_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW74333.1|951630_952716_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZW74334.1|952814_953765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74335.1|953761_954736_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW74336.1|954860_955772_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZW76941.1|956048_956441_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZW74337.1|956570_957521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74338.1|957550_957733_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZW74339.1|957771_958029_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74340.1|958505_959687_-	MFS transporter	NA	NA	NA	NA	NA
AZW74341.1|959902_960580_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW74342.1|960576_961350_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZW74343.1|961427_962009_-	OmpA family protein	NA	NA	NA	NA	NA
AZW74344.1|962379_965061_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZW74345.1|965060_966194_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZW74346.1|966186_967272_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZW74347.1|967358_968258_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZW74348.1|968254_969583_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZW74349.1|969597_970269_+	cytidylate kinase	NA	NA	NA	NA	NA
AZW74350.1|970441_972172_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZW74351.1|972173_972533_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZW74352.1|972724_973039_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZW74353.1|973081_974302_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZW74354.1|974298_975240_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZW74355.1|975236_976226_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZW74356.1|976260_976845_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZW74357.1|976943_977894_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	997294	1048259	4100074	transposase	Enterococcus_phage(25.0%)	40	NA	NA
AZW74372.1|997294_998245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74373.1|998349_999399_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZW76943.1|999536_1000553_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW74374.1|1002061_1002634_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZW74375.1|1002693_1003425_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZW76944.1|1003476_1004394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74376.1|1005201_1008381_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW74377.1|1009829_1010081_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZW74378.1|1010226_1010877_-	SCO family protein	NA	NA	NA	NA	NA
AZW74379.1|1011027_1013142_-	M3 family peptidase	NA	NA	NA	NA	NA
AZW74380.1|1013217_1014069_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZW74381.1|1014065_1014692_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW74382.1|1014688_1016443_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZW74383.1|1016735_1019441_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZW74384.1|1019453_1021115_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZW74385.1|1021127_1022918_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZW74386.1|1023139_1024315_-	flagellin FliC	NA	NA	NA	NA	NA
AZW74387.1|1024357_1025308_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74388.1|1025406_1026147_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZW74389.1|1026341_1028378_+	transketolase	NA	NA	NA	NA	NA
AZW74390.1|1028395_1029406_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZW74391.1|1029523_1030717_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZW74392.1|1030746_1031520_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW74393.1|1031516_1032707_-	acetate kinase	NA	NA	NA	NA	NA
AZW74394.1|1032732_1033671_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZW76945.1|1033667_1036016_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZW74395.1|1036170_1036878_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW74396.1|1036915_1038049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74397.1|1038325_1038874_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZW74398.1|1038892_1039378_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW74399.1|1039555_1040494_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZW74400.1|1040496_1040814_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW74401.1|1040859_1041804_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74402.1|1043484_1044135_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZW74403.1|1044188_1044524_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74404.1|1044520_1045381_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZW74405.1|1045397_1045679_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74406.1|1045752_1046016_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZW74407.1|1046259_1047210_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74408.1|1047308_1048259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	1060477	1126492	4100074	tRNA,transposase,holin	uncultured_Mediterranean_phage(33.33%)	53	NA	NA
AZW76946.1|1060477_1061494_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW76947.1|1062324_1063332_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW74421.1|1063328_1064972_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZW74422.1|1064968_1065871_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZW74423.1|1065996_1066470_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZW74424.1|1066459_1067482_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZW74425.1|1067478_1068906_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZW76948.1|1069843_1070860_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW74426.1|1071192_1072128_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZW74427.1|1072177_1074058_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZW74428.1|1074124_1074469_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZW74429.1|1074613_1075750_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZW74430.1|1075746_1076820_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZW74431.1|1076977_1078414_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZW76949.1|1078504_1079146_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW76950.1|1079481_1080498_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW74432.1|1080830_1083578_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZW76951.1|1083644_1085066_-	siroheme synthase	NA	NA	NA	NA	NA
AZW74433.1|1085329_1086046_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74434.1|1086130_1086448_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZW74435.1|1086488_1086902_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW74436.1|1086903_1087263_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74437.1|1087305_1088850_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZW74438.1|1088933_1089764_+	transglycosylase	NA	NA	NA	NA	NA
AZW74439.1|1089798_1090953_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZW74440.1|1090995_1091868_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74441.1|1091984_1094273_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW74442.1|1095479_1095944_+	barstar family protein 2	NA	NA	NA	NA	NA
AZW74443.1|1095970_1096921_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76952.1|1097288_1098065_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZW74444.1|1098109_1098967_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZW74445.1|1098988_1100005_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZW74446.1|1100139_1101180_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZW74447.1|1101374_1103456_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZW74448.1|1103691_1105185_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZW74449.1|1105415_1106210_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW74450.1|1106430_1107789_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZW74451.1|1107785_1108628_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZW74452.1|1108646_1110533_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZW74453.1|1110770_1111403_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZW74454.1|1111421_1112024_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74455.1|1112175_1113126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74456.1|1113928_1114729_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74457.1|1114772_1115759_-	homoserine kinase	NA	NA	NA	NA	NA
AZW74458.1|1115898_1116912_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZW74459.1|1116908_1117859_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74460.1|1117971_1118430_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZW74461.1|1118466_1119780_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74462.1|1119797_1120169_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZW74463.1|1120165_1121629_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZW74464.1|1121721_1122498_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW74465.1|1122479_1125359_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZW74466.1|1125541_1126492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	1316881	1385368	4100074	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZW74615.1|1316881_1317832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74616.1|1318600_1319239_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW76963.1|1320128_1320575_+	glutamate racemase	NA	NA	NA	NA	NA
AZW74617.1|1320656_1321358_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZW74618.1|1321358_1322126_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZW74619.1|1322122_1323361_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZW74620.1|1323360_1324287_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZW74621.1|1324389_1325505_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW74622.1|1325520_1326471_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74623.1|1326824_1327406_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZW74624.1|1327402_1328236_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZW76964.1|1328446_1329760_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZW74625.1|1329936_1330818_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZW74626.1|1330837_1331689_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZW74627.1|1331741_1332830_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZW74628.1|1332940_1334068_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW76965.1|1334302_1334914_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW74629.1|1335012_1335963_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74630.1|1336184_1336562_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZW76966.1|1336709_1337207_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZW74631.1|1337203_1337731_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZW74632.1|1337864_1338680_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW74633.1|1338692_1339874_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW74634.1|1339921_1340815_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZW76967.1|1340941_1341412_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74635.1|1341537_1342365_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZW74636.1|1342393_1343170_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZW74637.1|1343166_1343460_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZW74638.1|1343456_1343921_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW74639.1|1343932_1344718_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZW74640.1|1344743_1345244_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZW74641.1|1345326_1346505_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZW74642.1|1348132_1348468_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZW74643.1|1348655_1350104_+	CoA transferase	NA	NA	NA	NA	NA
AZW74644.1|1350161_1350506_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZW74645.1|1350612_1351152_-	peroxiredoxin	NA	NA	NA	NA	NA
AZW74646.1|1351244_1352195_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74647.1|1352181_1352664_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74648.1|1352933_1353365_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74649.1|1353546_1353951_-	DoxX family protein	NA	NA	NA	NA	NA
AZW74650.1|1355187_1355511_+	hypothetical protein	NA	NA	NA	NA	NA
AZW74651.1|1355513_1356401_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZW74652.1|1356433_1356859_-	universal stress protein	NA	NA	NA	NA	NA
AZW74653.1|1356930_1357284_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74654.1|1357523_1358030_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74655.1|1358068_1359400_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZW74656.1|1359459_1360275_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZW74657.1|1360271_1361126_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZW76968.1|1364188_1366732_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZW74658.1|1368098_1369853_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZW74659.1|1369849_1371970_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZW74660.1|1371974_1374170_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZW76969.1|1374166_1377508_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZW74661.1|1380310_1381261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74662.1|1381326_1381506_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76970.1|1381622_1382345_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW74663.1|1382364_1383510_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZW74664.1|1384417_1385368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	1445859	1501347	4100074	transposase,protease	Mollivirus(16.67%)	56	NA	NA
AZW74710.1|1445859_1446810_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74711.1|1448011_1448458_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZW74712.1|1448450_1449926_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZW74713.1|1449922_1450678_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZW74714.1|1450670_1451681_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZW74715.1|1451670_1453347_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZW74716.1|1453659_1453992_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZW74717.1|1454005_1454401_-	hypothetical protein	NA	NA	NA	NA	NA
AZW74718.1|1454410_1454737_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZW74719.1|1454733_1455060_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW74720.1|1454986_1456009_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZW74721.1|1456005_1456386_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZW74722.1|1456403_1456832_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZW74723.1|1456839_1458213_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZW76976.1|1458353_1458731_-	flagellar protein	NA	NA	NA	NA	NA
AZW74724.1|1458993_1460301_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZW74725.1|1460361_1461192_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW74726.1|1461188_1461677_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZW74727.1|1461718_1463239_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZW76977.1|1463282_1463759_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW74728.1|1464562_1467160_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZW74729.1|1467189_1468011_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZW74730.1|1468737_1469487_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZW74731.1|1469619_1470549_+	elongation factor Ts	NA	NA	NA	NA	NA
AZW74732.1|1470646_1471363_+	UMP kinase	NA	NA	NA	NA	NA
AZW74733.1|1471377_1471938_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZW74734.1|1471975_1472869_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZW74735.1|1472888_1473746_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZW74736.1|1473742_1474942_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZW74737.1|1474981_1476316_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZW74738.1|1476368_1478705_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZW76978.1|1478830_1479394_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZW74739.1|1479402_1480494_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZW74740.1|1480565_1481021_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZW74741.1|1481021_1481816_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZW74742.1|1481812_1482994_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZW74743.1|1482980_1483586_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZW74744.1|1483582_1484356_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZW74745.1|1484367_1485195_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZW74746.1|1485356_1487720_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZW74747.1|1487787_1488507_-	GMP synthase	NA	NA	NA	NA	NA
AZW74748.1|1488630_1489056_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZW74749.1|1489090_1490041_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74750.1|1490158_1491085_+	paraslipin	NA	NA	NA	NA	NA
AZW74751.1|1491150_1492308_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZW74752.1|1492288_1492756_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZW74753.1|1492903_1493854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74754.1|1493870_1494305_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZW74755.1|1494294_1494645_+	RnfH family protein	NA	NA	NA	NA	NA
AZW74756.1|1494841_1495996_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW74757.1|1495992_1497165_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW74758.1|1497212_1498106_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW74759.1|1498151_1498589_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW74760.1|1498648_1499338_+	VIT family protein	NA	NA	NA	NA	NA
AZW74761.1|1499347_1500298_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW74762.1|1500396_1501347_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	1914635	1969871	4100074	transposase,protease	Lake_Baikal_phage(25.0%)	50	NA	NA
AZW75101.1|1914635_1915586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75102.1|1915786_1916596_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW75103.1|1916720_1917671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75104.1|1917667_1918561_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZW75105.1|1918685_1918880_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZW75106.1|1918879_1919221_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZW75107.1|1919230_1921093_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZW75108.1|1921222_1921735_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZW75109.1|1921737_1922061_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZW75110.1|1922062_1922473_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZW75111.1|1922510_1923722_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZW75112.1|1923739_1924252_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZW75113.1|1924467_1924959_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZW75114.1|1925211_1927248_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZW75115.1|1927325_1928528_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW75116.1|1928578_1929307_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZW75117.1|1930864_1931815_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75118.1|1932385_1932598_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75119.1|1932615_1933347_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75120.1|1933381_1934023_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW75121.1|1934015_1934732_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW75122.1|1936896_1937673_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW75123.1|1937694_1938852_-	thiolase	NA	NA	NA	NA	NA
AZW75124.1|1938848_1939280_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75125.1|1939276_1940080_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW75126.1|1940093_1940549_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW75127.1|1940561_1941533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW75128.1|1941598_1942822_-	CoA transferase	NA	NA	NA	NA	NA
AZW75129.1|1943049_1944000_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75130.1|1944123_1946577_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZW75131.1|1946765_1948070_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZW75132.1|1948174_1948828_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZW75133.1|1948830_1950141_-	trigger factor	NA	NA	NA	NA	NA
AZW75134.1|1950319_1950898_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZW75135.1|1951009_1951210_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZW75136.1|1951555_1952122_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZW75137.1|1952205_1952409_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZW75138.1|1952715_1953036_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75139.1|1953077_1953359_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75140.1|1953433_1954690_-	autotransporter Phg	NA	NA	NA	NA	NA
AZW75141.1|1955072_1955402_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW75142.1|1956972_1957794_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZW75143.1|1957793_1958933_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZW75144.1|1958939_1959836_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZW75145.1|1959832_1961758_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZW75146.1|1962117_1964730_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW75147.1|1964782_1967083_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZW75148.1|1967079_1968288_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZW75149.1|1968549_1968924_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75150.1|1968920_1969871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	2294788	2356136	4100074	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZW75402.1|2294788_2295739_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75403.1|2295855_2296575_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75404.1|2296747_2297734_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75405.1|2297734_2298217_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW75406.1|2298220_2299504_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW75407.1|2299500_2300439_+	CoA ester lyase	NA	NA	NA	NA	NA
AZW75408.1|2300435_2302145_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZW75409.1|2302154_2303402_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW77012.1|2305012_2306302_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZW75410.1|2307439_2308213_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZW75411.1|2308874_2309618_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75412.1|2309692_2310433_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75413.1|2310628_2311465_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75414.1|2311515_2312286_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZW75415.1|2312335_2313388_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZW75416.1|2313384_2314011_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZW75417.1|2314007_2315054_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZW75418.1|2315220_2316237_+	folate-binding protein	NA	NA	NA	NA	NA
AZW77013.1|2316335_2317286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75419.1|2320026_2321316_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW75420.1|2321434_2321905_-	DNA-binding protein	NA	NA	NA	NA	NA
AZW75421.1|2321915_2323124_-	flavohemoprotein	NA	NA	NA	NA	NA
AZW75422.1|2323270_2323735_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZW75423.1|2323758_2324709_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75424.1|2325693_2326467_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW75425.1|2326463_2327462_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75426.1|2327546_2328323_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZW75427.1|2328478_2330146_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZW75428.1|2330463_2331588_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75429.1|2331714_2332338_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75430.1|2332334_2334236_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW75431.1|2334284_2335079_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW75432.1|2335091_2336093_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZW75433.1|2336089_2336596_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZW75434.1|2336588_2337437_-	hydrolase	NA	NA	NA	NA	NA
AZW75435.1|2337534_2338077_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75436.1|2338120_2339071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75437.1|2339226_2339553_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZW75438.1|2339549_2339834_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZW75439.1|2339830_2340310_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZW75440.1|2340306_2341935_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZW75441.1|2341931_2342276_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZW75442.1|2342275_2345209_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZW75443.1|2346367_2347318_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75444.1|2347416_2347713_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75445.1|2347819_2348737_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75446.1|2348741_2349455_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW75447.1|2349468_2350440_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW75448.1|2352159_2352540_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75449.1|2352543_2353731_+	MFS transporter	NA	NA	NA	NA	NA
AZW77014.1|2354169_2354892_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZW75450.1|2355185_2356136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	2376927	2448081	4100074	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZW75465.1|2376927_2377878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75466.1|2378430_2380056_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZW77019.1|2380105_2381140_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZW75467.1|2381142_2382489_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77020.1|2382485_2384000_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZW75468.1|2383990_2385001_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75469.1|2385474_2386416_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZW75470.1|2386424_2387393_-	AAA family ATPase	NA	NA	NA	NA	NA
AZW75471.1|2388932_2389901_+	transporter	NA	NA	NA	NA	NA
AZW75472.1|2390078_2391068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW75473.1|2391114_2391873_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW75474.1|2392062_2392800_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZW75475.1|2392898_2393849_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75476.1|2394033_2394816_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZW75477.1|2394809_2395511_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW75478.1|2395750_2396353_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75479.1|2397679_2398630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75480.1|2398626_2400183_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZW75481.1|2400175_2400949_-	oxidoreductase	NA	NA	NA	NA	NA
AZW75482.1|2401007_2401958_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75483.1|2402039_2403215_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZW75484.1|2403228_2405286_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW75485.1|2405282_2406308_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZW75486.1|2406319_2407609_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZW75487.1|2407631_2408729_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW75488.1|2408725_2409616_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW75489.1|2409612_2411697_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZW75490.1|2411728_2412898_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZW75491.1|2412939_2413680_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW75492.1|2413679_2414450_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZW75493.1|2415305_2416091_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZW75494.1|2416117_2418202_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75495.1|2418369_2420325_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW77021.1|2420648_2421149_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZW75496.1|2421247_2422774_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZW77022.1|2422911_2423799_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75497.1|2423813_2424767_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZW75498.1|2424818_2426909_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZW75499.1|2426924_2427311_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZW75500.1|2430004_2430808_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZW75501.1|2432101_2433004_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75502.1|2433068_2433845_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZW75503.1|2434166_2435216_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75504.1|2435339_2437010_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW75505.1|2437014_2437809_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZW75506.1|2437907_2438858_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75507.1|2438877_2439783_-	pirin family protein	NA	NA	NA	NA	NA
AZW75508.1|2439860_2440559_-	pirin family protein	NA	NA	NA	NA	NA
AZW75509.1|2440718_2441663_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75510.1|2441672_2443163_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZW75511.1|2443159_2444227_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZW75512.1|2444290_2445703_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZW75513.1|2445888_2447109_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZW75514.1|2447130_2448081_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	2489022	2550869	4100074	tRNA,transposase,protease	Planktothrix_phage(14.29%)	60	NA	NA
AZW75553.1|2489022_2489973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75554.1|2490071_2490680_-	recombination protein RecR	NA	NA	NA	NA	NA
AZW75555.1|2490730_2491057_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZW75556.1|2491103_2493329_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZW75557.1|2493996_2497401_-	nuclease	NA	NA	NA	NA	NA
AZW75558.1|2497413_2500074_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75559.1|2500277_2501480_-	MFS transporter	NA	NA	NA	NA	NA
AZW75560.1|2502166_2503279_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZW75561.1|2503285_2504236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75562.1|2504334_2504736_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZW75563.1|2504808_2505387_-|protease	protease	protease	NA	NA	NA	NA
AZW77025.1|2505504_2505993_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZW75564.1|2506006_2506939_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZW75565.1|2506976_2507864_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZW75566.1|2508021_2509716_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZW75567.1|2509732_2510989_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW75568.1|2511126_2511672_-	acyl dehydratase	NA	NA	NA	NA	NA
AZW75569.1|2511703_2513263_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZW75570.1|2513391_2514144_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZW75571.1|2514165_2514858_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW75572.1|2514880_2515672_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75573.1|2515698_2516604_-	agmatinase	NA	NA	NA	NA	NA
AZW75574.1|2516796_2517633_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75575.1|2517724_2518747_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZW75576.1|2518883_2519936_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZW75577.1|2519940_2521131_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZW75578.1|2521133_2521613_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZW75579.1|2521798_2522278_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZW75580.1|2522285_2522522_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75581.1|2522541_2522943_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZW75582.1|2522945_2523197_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZW75583.1|2523251_2524133_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZW75584.1|2524357_2524804_+	GFA family protein	NA	NA	NA	NA	NA
AZW75585.1|2524888_2525953_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZW75586.1|2526089_2526671_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZW75587.1|2526905_2528036_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW75588.1|2528213_2529440_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZW75589.1|2529498_2530014_+	transporter	NA	NA	NA	NA	NA
AZW75590.1|2530036_2530363_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZW75591.1|2530396_2531587_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZW75592.1|2531660_2532065_+	GFA family protein	NA	NA	NA	NA	NA
AZW75593.1|2532281_2533232_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75594.1|2533330_2534101_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZW75595.1|2534097_2534769_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZW75596.1|2534765_2535407_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZW75597.1|2535419_2536340_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZW75598.1|2536500_2537661_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75599.1|2537702_2538653_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZW75600.1|2539251_2539476_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75601.1|2539640_2541335_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZW75602.1|2541456_2541726_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZW75603.1|2541841_2542240_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZW75604.1|2542250_2543207_-	glutathione synthetase	NA	NA	NA	NA	NA
AZW75605.1|2543343_2543889_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZW75606.1|2543909_2545859_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZW75607.1|2546246_2547023_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW75608.1|2547028_2547421_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75609.1|2547842_2548793_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75610.1|2548789_2549887_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZW75611.1|2549918_2550869_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	2681748	2722417	4100074	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
AZW75722.1|2681748_2682699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75723.1|2682809_2682992_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75724.1|2683091_2683688_-	lipoprotein	NA	NA	NA	NA	NA
AZW75725.1|2683871_2684963_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75726.1|2685462_2685873_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75727.1|2685931_2686273_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZW75728.1|2686278_2688696_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW75729.1|2688708_2689731_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZW75730.1|2689805_2690165_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZW75731.1|2690180_2690378_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZW75732.1|2690713_2691664_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75733.1|2691650_2691839_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75734.1|2691858_2692308_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZW75735.1|2692304_2693255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75736.1|2693365_2694814_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW75737.1|2694928_2695210_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75738.1|2695313_2696264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75739.1|2696508_2697222_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW75740.1|2697344_2697572_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW75741.1|2697866_2698505_-	DedA family protein	NA	NA	NA	NA	NA
AZW75742.1|2698577_2699648_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZW75743.1|2699644_2700595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75744.1|2701010_2701535_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZW75745.1|2701538_2701808_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75746.1|2702006_2703068_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW75747.1|2703151_2704786_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZW75748.1|2704787_2705591_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW75749.1|2705619_2706579_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW75750.1|2706582_2708097_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75751.1|2708133_2709138_-	peptidase M20	NA	NA	NA	NA	NA
AZW75752.1|2709569_2710040_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZW75753.1|2710075_2710687_-	LysE family translocator	NA	NA	NA	NA	NA
AZW75754.1|2710717_2711341_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW75755.1|2711421_2712954_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW75756.1|2712988_2714230_-	MFS transporter	NA	NA	NA	NA	NA
AZW75757.1|2714273_2715305_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZW75758.1|2715301_2716471_-	amine oxidase	NA	NA	NA	NA	NA
AZW75759.1|2716464_2717145_-	anti-sigma factor	NA	NA	NA	NA	NA
AZW75760.1|2717306_2718149_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75761.1|2718311_2719283_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW75762.1|2719454_2720333_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW75763.1|2720355_2721426_-	FUSC family protein	NA	NA	NA	NA	NA
AZW75764.1|2721466_2722417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	2777882	2850752	4100074	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZW75808.1|2777882_2778299_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZW75809.1|2778409_2779042_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZW75810.1|2779070_2779514_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZW75811.1|2779535_2780627_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75812.1|2780681_2781482_-	aldolase	NA	NA	NA	NA	NA
AZW75813.1|2781617_2782238_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW75814.1|2782377_2782851_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75815.1|2783990_2784941_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75816.1|2784937_2792599_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZW75817.1|2792839_2796886_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZW75818.1|2797198_2797780_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW75819.1|2797776_2799075_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW75820.1|2799154_2800183_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW75821.1|2800106_2800457_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75822.1|2800443_2801394_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75823.1|2801390_2802341_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75824.1|2802657_2803263_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZW75825.1|2803316_2804630_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZW75826.1|2804704_2805175_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZW75827.1|2805174_2805963_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZW75828.1|2805973_2807626_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZW75829.1|2807713_2808664_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW77036.1|2809825_2810332_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZW75830.1|2810328_2811093_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZW75831.1|2811108_2811393_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZW75832.1|2811457_2812447_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZW75833.1|2812618_2813548_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZW75834.1|2813519_2814206_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZW75835.1|2814239_2814785_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZW75836.1|2814829_2816095_+	peptidase M48	NA	NA	NA	NA	NA
AZW75837.1|2816091_2816994_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZW75838.1|2818175_2819120_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW75839.1|2819214_2820732_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75840.1|2820773_2822402_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW75841.1|2822509_2823391_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75842.1|2826503_2826878_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZW75843.1|2826902_2827241_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZW75844.1|2827284_2828919_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZW75845.1|2828957_2830304_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZW77037.1|2830411_2831833_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZW75846.1|2831902_2832487_-	nitroreductase	NA	NA	NA	NA	NA
AZW75847.1|2832589_2833540_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75848.1|2833674_2834781_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75849.1|2834791_2835889_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZW75850.1|2836033_2837239_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZW75851.1|2837245_2837767_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZW75852.1|2837763_2838255_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZW75853.1|2838251_2838503_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZW75854.1|2838483_2838969_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZW75855.1|2839104_2842566_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75856.1|2842562_2843468_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZW75857.1|2843477_2843909_-	lipoprotein	NA	NA	NA	NA	NA
AZW77038.1|2844155_2844659_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZW75858.1|2844670_2846137_+	MFS transporter	NA	NA	NA	NA	NA
AZW75859.1|2846211_2847087_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77039.1|2847083_2848091_-	biotin synthase	NA	NA	NA	NA	NA
AZW75860.1|2848558_2848864_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW75861.1|2848954_2849545_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77040.1|2849735_2850752_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	2853895	2920707	4100074	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZW75864.1|2853895_2854846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75865.1|2854944_2855895_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75866.1|2855891_2856686_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZW75867.1|2856717_2857422_-	oxidoreductase	NA	NA	NA	NA	NA
AZW75868.1|2857496_2858297_-	SURF1 family protein	NA	NA	NA	NA	NA
AZW75869.1|2858293_2858701_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZW75870.1|2858697_2859339_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZW75871.1|2859331_2861353_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW75872.1|2862592_2863924_+	MFS transporter	NA	NA	NA	NA	NA
AZW75873.1|2863920_2864871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75874.1|2866577_2866883_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75875.1|2867551_2867890_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW75876.1|2872444_2873047_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW75877.1|2873143_2874433_+	MFS transporter	NA	NA	NA	NA	NA
AZW75878.1|2874490_2875222_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZW75879.1|2875218_2876022_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZW75880.1|2876018_2877107_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW75881.1|2877103_2878033_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW75882.1|2878181_2879327_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75883.1|2879348_2880299_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75884.1|2880629_2884451_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW75885.1|2884607_2885276_-	lipoprotein	NA	NA	NA	NA	NA
AZW75886.1|2885280_2886954_-	MCE family protein	NA	NA	NA	NA	NA
AZW75887.1|2886972_2888292_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZW75888.1|2888296_2890648_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZW77041.1|2890667_2892836_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZW75889.1|2892832_2898022_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZW75890.1|2898111_2898426_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZW75891.1|2898653_2898899_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZW75892.1|2898993_2899512_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZW75893.1|2899611_2900817_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZW75894.1|2900932_2902330_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZW75895.1|2902446_2903025_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZW75896.1|2903097_2904489_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZW75897.1|2904656_2905607_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75898.1|2905887_2906508_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZW75899.1|2906504_2906918_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZW75900.1|2906914_2907958_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZW75901.1|2908013_2908202_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75902.1|2908211_2908976_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZW75903.1|2909066_2909723_+	adenylate kinase	NA	NA	NA	NA	NA
AZW75904.1|2909814_2910573_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW75905.1|2910598_2912200_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZW75906.1|2912400_2913405_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZW75907.1|2913505_2913769_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZW75908.1|2913886_2914663_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZW75909.1|2915253_2916204_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75910.1|2918587_2919700_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZW75911.1|2919756_2920707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	2951093	2990282	4100074	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZW75940.1|2951093_2952044_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75941.1|2952030_2952276_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75942.1|2952164_2953061_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZW75943.1|2955338_2957564_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZW75944.1|2957728_2958817_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZW75945.1|2958773_2959427_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW75946.1|2959474_2960272_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75947.1|2960803_2961754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75948.1|2961834_2962983_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW75949.1|2963039_2963990_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75950.1|2963976_2964195_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75951.1|2964088_2964394_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW75952.1|2964422_2964857_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW75953.1|2964858_2966103_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW75954.1|2966099_2966810_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77043.1|2966824_2967736_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW75955.1|2968098_2968503_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75956.1|2968499_2968958_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75957.1|2968964_2969873_+	hypothetical protein	NA	NA	NA	NA	NA
AZW77044.1|2969869_2970736_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW75958.1|2970722_2971550_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW75959.1|2971560_2972688_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZW75960.1|2973765_2975004_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75961.1|2975045_2976308_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW75962.1|2976314_2977067_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW75963.1|2977118_2977304_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77045.1|2977579_2978044_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZW75964.1|2978075_2978735_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZW75965.1|2978879_2980988_+	AsmA family protein	NA	NA	NA	NA	NA
AZW75966.1|2980984_2981935_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75967.1|2982038_2982659_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW77046.1|2982762_2983503_+	oxidoreductase	NA	NA	NA	NA	NA
AZW75968.1|2984637_2985762_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75969.1|2985807_2986176_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75970.1|2986417_2987368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW75971.1|2988403_2988946_-	hypothetical protein	NA	NA	NA	NA	NA
AZW75972.1|2989150_2989345_+	hypothetical protein	NA	NA	NA	NA	NA
AZW75973.1|2989331_2990282_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	3228294	3272961	4100074	transposase,holin	Erwinia_phage(16.67%)	46	NA	NA
AZW76159.1|3228294_3229245_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76160.1|3229689_3230001_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZW76161.1|3230000_3230531_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76162.1|3230693_3231644_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76163.1|3231933_3232398_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZW76164.1|3232412_3233918_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZW76165.1|3234171_3235779_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW76166.1|3235834_3236740_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW76167.1|3237180_3238131_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76168.1|3238212_3238794_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZW77064.1|3239218_3239524_+	RND transporter	NA	NA	NA	NA	NA
AZW76169.1|3239537_3240872_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZW76170.1|3240893_3241433_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZW76171.1|3241580_3242045_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZW76172.1|3242187_3243303_-	GTP-binding protein	NA	NA	NA	NA	NA
AZW76173.1|3243579_3244083_-	transcriptional repressor	NA	NA	NA	NA	NA
AZW76174.1|3244220_3244421_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76175.1|3244411_3245134_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZW76176.1|3245130_3246027_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZW76177.1|3246023_3246959_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW77065.1|3246964_3247588_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZW76178.1|3247578_3248547_+	nickel transporter	NA	NA	NA	NA	NA
AZW76179.1|3248595_3250737_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW76180.1|3250749_3251730_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZW76181.1|3251744_3252437_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZW76182.1|3252463_3253375_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZW76183.1|3253417_3254308_-	acyltransferase	NA	NA	NA	NA	NA
AZW76184.1|3254304_3255159_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZW76185.1|3255307_3256606_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZW76186.1|3256716_3256968_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZW76187.1|3257047_3258088_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZW76188.1|3258367_3259786_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZW76189.1|3259856_3260192_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW76190.1|3260191_3261034_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZW76191.1|3261132_3262083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76192.1|3262098_3262602_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW77066.1|3264808_3265234_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76193.1|3265385_3265685_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW76194.1|3265730_3265853_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76195.1|3265945_3266527_-	hypothetical protein	NA	NA	NA	NA	NA
AZW77067.1|3266614_3267499_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW76196.1|3267634_3268390_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW76197.1|3268411_3269092_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW76198.1|3269103_3270213_+	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZW77068.1|3270219_3271698_-	phospholipase D family protein	NA	NA	NA	NA	NA
AZW76199.1|3272010_3272961_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	3284790	3324791	4100074	tRNA,integrase,transposase,protease	Mycobacterium_phage(50.0%)	29	3307587:3307605	3327475:3327493
AZW76208.1|3284790_3285741_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76209.1|3285727_3285925_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76210.1|3286268_3287042_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW76211.1|3287174_3288185_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW76212.1|3288336_3289992_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW76213.1|3290046_3290388_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW76214.1|3290401_3291841_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW76215.1|3291973_3292789_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76216.1|3292807_3292996_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76217.1|3292982_3293933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76218.1|3295320_3296268_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76219.1|3296494_3297235_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76220.1|3297320_3298271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76221.1|3299712_3301284_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZW76222.1|3301616_3303470_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76223.1|3303514_3306079_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZW76224.1|3306497_3307448_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3307587:3307605	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZW76225.1|3310313_3310808_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZW76226.1|3310824_3311775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76227.1|3311761_3311962_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76228.1|3311958_3313170_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZW76229.1|3313185_3316137_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZW76230.1|3316138_3319258_-	restriction endonuclease	NA	NA	NA	NA	NA
AZW77070.1|3319254_3319395_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZW76231.1|3319405_3320452_-	Fic family protein	NA	NA	NA	NA	NA
AZW76232.1|3320793_3321921_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZW76233.1|3322200_3323292_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZW76234.1|3323364_3324147_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZW76235.1|3324143_3324791_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3327475:3327493	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 24
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	3373678	3427419	4100074	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZW76272.1|3373678_3374629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76273.1|3375033_3375678_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZW76274.1|3375702_3376287_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZW76275.1|3376387_3377005_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZW76276.1|3377007_3378723_-	urease subunit alpha	NA	NA	NA	NA	NA
AZW76277.1|3378719_3379028_-	urease subunit beta	NA	NA	NA	NA	NA
AZW76278.1|3379044_3379680_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZW76279.1|3379706_3380009_-	urease subunit gamma	NA	NA	NA	NA	NA
AZW76280.1|3380109_3380964_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZW76281.1|3381545_3381818_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW76282.1|3382235_3382643_-	GFA family protein	NA	NA	NA	NA	NA
AZW76283.1|3383012_3383807_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76284.1|3383907_3385143_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW76285.1|3385211_3386228_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW76286.1|3386224_3387616_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW76287.1|3387612_3388809_+	MFS transporter	NA	NA	NA	NA	NA
AZW76288.1|3388805_3390344_-	SpoVR family protein	NA	NA	NA	NA	NA
AZW76289.1|3390340_3391600_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76290.1|3393540_3394491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76291.1|3395257_3396352_-	CoA transferase	NA	NA	NA	NA	NA
AZW76292.1|3396344_3397679_-	CoA ligase	NA	NA	NA	NA	NA
AZW76293.1|3397632_3398316_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76294.1|3398341_3399505_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW76295.1|3399501_3400503_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW76296.1|3400502_3401375_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW76297.1|3401371_3402121_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZW76298.1|3402117_3402909_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZW76299.1|3402905_3404045_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW76300.1|3404353_3405106_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW76301.1|3405139_3405922_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW76302.1|3405925_3406315_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW76303.1|3407454_3408318_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW76304.1|3408353_3409442_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76305.1|3409438_3410389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76306.1|3410375_3410744_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76307.1|3410742_3413721_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76308.1|3414647_3415526_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZW76309.1|3417474_3418425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76310.1|3418421_3418889_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZW76311.1|3418931_3419702_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW76312.1|3419722_3420523_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZW76313.1|3420533_3421943_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZW76314.1|3422037_3422823_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW77073.1|3423062_3424079_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW76315.1|3424186_3424579_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW76316.1|3424716_3425397_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZW76317.1|3425401_3426400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW76318.1|3426468_3427419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	3433574	3492874	4100074	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZW76322.1|3433574_3435338_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZW76323.1|3435449_3436328_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZW76324.1|3436440_3437256_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZW76325.1|3437259_3437511_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZW77074.1|3437595_3438612_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW76326.1|3438942_3439164_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76327.1|3441524_3442442_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW76328.1|3442939_3444148_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW76329.1|3444227_3445799_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW76330.1|3445916_3446852_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZW76331.1|3447040_3447985_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZW76332.1|3448053_3448269_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76333.1|3448552_3454270_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZW76334.1|3454275_3455403_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZW76335.1|3455458_3456085_+	aminotransferase	NA	NA	NA	NA	NA
AZW77075.1|3456356_3457373_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW76336.1|3457468_3458179_-	oxidoreductase	NA	NA	NA	NA	NA
AZW77076.1|3458175_3459165_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW76337.1|3459296_3460892_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZW76338.1|3460894_3461632_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76339.1|3461787_3462660_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZW76340.1|3462928_3464149_+	MFS transporter	NA	NA	NA	NA	NA
AZW76341.1|3464145_3464805_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW76342.1|3464876_3465509_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZW76343.1|3465538_3466057_+	flavin reductase	NA	NA	NA	NA	NA
AZW76344.1|3466067_3467177_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW76345.1|3467223_3468078_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZW76346.1|3468079_3468982_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76347.1|3470204_3471155_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76348.1|3472911_3473901_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76349.1|3474076_3474865_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZW76350.1|3474861_3475893_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZW76351.1|3475911_3476475_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZW76352.1|3476530_3478051_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZW76353.1|3478314_3479019_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW76354.1|3479026_3479764_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZW76355.1|3479869_3480244_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZW76356.1|3480286_3481576_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76357.1|3481572_3482742_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZW76358.1|3482738_3483578_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZW76359.1|3483637_3484573_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZW76360.1|3484585_3485536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76361.1|3485634_3486597_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZW76362.1|3486628_3486988_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZW76363.1|3487112_3488015_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZW76364.1|3488016_3489789_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZW76365.1|3489823_3490600_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW76366.1|3491923_3492874_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025345	Bordetella pertussis strain C871 chromosome, complete genome	4100074	3507812	3565885	4100074	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZW76378.1|3507812_3508763_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76379.1|3508891_3510025_-	peptidase	NA	NA	NA	NA	NA
AZW76380.1|3510068_3510974_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW76381.1|3510976_3512677_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZW76382.1|3512673_3513594_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW76383.1|3513601_3514579_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW76384.1|3514637_3515672_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW76385.1|3517646_3517883_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76386.1|3518009_3518873_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZW76387.1|3518961_3519783_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW76388.1|3519862_3520600_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW76389.1|3520596_3521589_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZW76390.1|3521702_3522365_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76391.1|3522409_3523558_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW76392.1|3525881_3526832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76393.1|3527172_3528123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76394.1|3528221_3529172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76395.1|3529468_3529966_+	hypothetical protein	NA	NA	NA	NA	NA
AZW76396.1|3530008_3531784_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZW77079.1|3531830_3532658_+	copper resistance protein B	NA	NA	NA	NA	NA
AZW76397.1|3532664_3533399_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW76398.1|3534568_3535363_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW76399.1|3535652_3536243_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW76400.1|3536276_3537605_-	amidase	NA	NA	NA	NA	NA
AZW76401.1|3537679_3538825_-	transporter	NA	NA	NA	NA	NA
AZW76402.1|3538936_3539935_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76403.1|3539897_3540332_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZW76404.1|3541848_3542733_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW76405.1|3542729_3543935_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW76406.1|3543931_3544792_-	endonuclease	NA	NA	NA	NA	NA
AZW76407.1|3544904_3546695_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZW76408.1|3546735_3547401_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZW76409.1|3547401_3547710_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZW77080.1|3547875_3549162_-	hypothetical protein	NA	NA	NA	NA	NA
AZW76410.1|3550595_3551546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW76411.1|3553497_3554712_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZW76412.1|3554817_3555807_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZW76413.1|3555803_3556412_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZW76414.1|3556424_3557054_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZW76415.1|3557050_3557671_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZW76416.1|3557702_3558494_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZW76417.1|3559336_3559801_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZW76418.1|3559819_3560746_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZW76419.1|3560799_3562086_-	cytochrome c	NA	NA	NA	NA	NA
AZW76420.1|3563016_3563889_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZW76421.1|3563885_3564836_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZW76422.1|3564934_3565885_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
