The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	0	122072	4106374	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZW66357.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZW66358.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZW66359.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZW66360.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW66361.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZW66362.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZW66363.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZW66364.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZW66365.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZW66366.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZW66367.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZW66368.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZW66369.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZW66370.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZW69743.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZW66371.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66372.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZW66373.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW66374.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66375.1|28313_28649_-	CoA transferase	NA	NA	NA	NA	NA
AZW66376.1|28673_29108_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66377.1|29140_30367_-	thiolase family protein	NA	NA	NA	NA	NA
AZW66378.1|30363_30861_-	dehydratase	NA	NA	NA	NA	NA
AZW69744.1|31068_31977_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66379.1|32162_33005_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW66380.1|33047_34469_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW66381.1|34624_35575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66382.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AZW66383.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZW66384.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW66385.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZW66386.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW66387.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AZW66388.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZW66389.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZW66390.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZW66391.1|43662_44613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66392.1|45112_45748_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66393.1|45719_45956_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW66394.1|46083_46977_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66395.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZW66396.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZW66397.1|50140_51091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66398.1|51133_52390_+	MFS transporter	NA	NA	NA	NA	NA
AZW66399.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZW66400.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZW66401.1|54976_55666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW66402.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW66403.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW66404.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66405.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW66406.1|60473_60893_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW66407.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66408.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66409.1|63472_64054_-|protease	protease	protease	NA	NA	NA	NA
AZW66410.1|64066_64384_-	ferredoxin	NA	NA	NA	NA	NA
AZW66411.1|64487_65546_-	oxidoreductase	NA	NA	NA	NA	NA
AZW66412.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW66413.1|67481_68663_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66414.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66415.1|70128_70443_+|transposase	transposase	transposase	NA	NA	NA	NA
AZW66416.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZW66417.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW66418.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZW66419.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69745.1|75279_76029_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66420.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZW66421.1|77633_78584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69746.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66422.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZW66423.1|82821_83526_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZW66424.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW66425.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
AZW66426.1|85480_86713_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZW66427.1|86730_87990_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZW66428.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZW66429.1|89109_90210_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZW66430.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW66431.1|90792_91845_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZW66432.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZW66433.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZW66434.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66435.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZW66436.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZW66437.1|96202_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW66438.1|97338_98178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZW66439.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66440.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW66441.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZW66442.1|101787_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZW66443.1|102807_103083_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZW66444.1|103090_103753_+	octanoyltransferase	NA	NA	NA	NA	NA
AZW66445.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
AZW66446.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZW66447.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZW66448.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZW66449.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66450.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW66451.1|110551_111181_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZW66452.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW66453.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW69747.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZW66454.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69748.1|114943_115960_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW66455.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW66456.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW66457.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW66458.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZW66459.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
AZW66460.1|121121_122072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	164891	225402	4106374	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZW66492.1|164891_165842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66493.1|167285_168188_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66494.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
AZW66495.1|169125_170508_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZW66496.1|170541_171171_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZW66497.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZW66498.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69753.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
AZW66499.1|174299_175250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66500.1|176365_176893_+	lipoprotein	NA	NA	NA	NA	NA
AZW66501.1|176984_177800_+	lipoprotein	NA	NA	NA	NA	NA
AZW66502.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW66503.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZW66504.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66505.1|181331_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZW66506.1|182423_184328_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZW66507.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZW66508.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZW66509.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
AZW66510.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZW69754.1|189528_189975_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZW66511.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66512.1|190753_193024_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZW66513.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW66514.1|194403_195354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66515.1|195399_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZW66516.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW66517.1|197376_198477_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZW66518.1|198558_198933_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZW66519.1|198992_201857_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZW66520.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66521.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
AZW66522.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66523.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66524.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZW66525.1|207168_208218_-	cyclase	NA	NA	NA	NA	NA
AZW66526.1|208214_209039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZW66527.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
AZW66528.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZW66529.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW66530.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW69755.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66531.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW66532.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZW66533.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW66534.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZW66535.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZW66536.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZW66537.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZW66538.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZW66539.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	233334	286922	4106374	protease,tRNA,transposase	Bacillus_phage(25.0%)	48	NA	NA
AZW66547.1|233334_234285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66548.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66549.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66550.1|236367_237165_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW66551.1|238114_238525_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZW66552.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66553.1|240333_241377_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW66554.1|241547_243650_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66555.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66556.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZW66557.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZW66558.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZW66559.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZW66560.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZW66561.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZW66562.1|251621_253511_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZW66563.1|253597_254236_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69756.1|254378_255623_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZW66564.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZW66565.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZW66566.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
AZW66567.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZW66568.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66569.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW66570.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
AZW66571.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66572.1|265571_266522_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66573.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66574.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW66575.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZW66576.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZW66577.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZW66578.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZW66579.1|274098_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZW66580.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW66581.1|277138_278089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66582.1|278075_278291_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66583.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZW66584.1|278535_278676_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66585.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZW66586.1|279653_280265_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW66587.1|280423_281278_-	cytochrome c1	NA	NA	NA	NA	NA
AZW66588.1|281297_282680_-	cytochrome b	NA	NA	NA	NA	NA
AZW66589.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZW66590.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZW66591.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZW69757.1|284838_285975_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZW66592.1|285971_286922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	390855	448364	4106374	transposase	Orpheovirus(14.29%)	50	NA	NA
AZW66691.1|390855_391806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66692.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
AZW66693.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZW66694.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
AZW66695.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66696.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
AZW66697.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66698.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69763.1|400016_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZW66699.1|401155_402139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66700.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66701.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW66702.1|403582_404824_-	CoA transferase	NA	NA	NA	NA	NA
AZW66703.1|404928_406635_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW66704.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66705.1|407568_409158_-	sulfurtransferase	NA	NA	NA	NA	NA
AZW66706.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66707.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69764.1|411328_412306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66708.1|412384_413335_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66709.1|413423_414338_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW66710.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
AZW66711.1|415083_416007_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZW66712.1|416012_416468_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66713.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZW69765.1|417487_417796_+	GtrA family protein	NA	NA	NA	NA	NA
AZW66714.1|417755_419375_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZW66715.1|419371_420430_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZW66716.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW66717.1|421146_422124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66718.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZW66719.1|423521_425033_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW69766.1|425048_426362_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZW66720.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66721.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZW66722.1|430320_431271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66723.1|431402_431801_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZW66724.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
AZW66725.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZW66726.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW66727.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZW66728.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZW66729.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
AZW66730.1|439208_439994_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW66731.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66732.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66733.1|442145_443318_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW66734.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW66735.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW66736.1|447413_448364_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	619751	720215	4106374	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZW66887.1|619751_620702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66888.1|621400_621784_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66889.1|621841_622444_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZW69772.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
AZW66890.1|622996_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66891.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZW66892.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
AZW66893.1|626037_627087_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZW66894.1|627234_627813_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZW66895.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZW66896.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZW66897.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW66898.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZW66899.1|635740_636691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66900.1|636789_637590_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66901.1|637651_638035_+	thioredoxin	NA	NA	NA	NA	NA
AZW66902.1|638046_639480_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZW66903.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZW69773.1|640018_640687_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW66904.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZW66905.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZW66906.1|642152_642575_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZW66907.1|642591_643692_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW66908.1|643788_645306_-	peptidase	NA	NA	NA	NA	NA
AZW66909.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZW66910.1|646242_647124_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZW66911.1|647205_648300_-	porin	NA	NA	NA	NA	NA
AZW66912.1|648593_649544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69774.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66913.1|650643_651003_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66914.1|651384_652422_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66915.1|652738_654079_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZW66916.1|654088_654541_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66917.1|654637_655819_+	monooxygenase	NA	NA	NA	NA	NA
AZW66918.1|655878_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZW66919.1|656950_657190_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW66920.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZW66921.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZW66922.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZW66923.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZW66924.1|661053_662022_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZW66925.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZW66926.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZW66927.1|665119_666070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66928.1|666158_666494_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZW66929.1|666627_667278_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZW66930.1|667299_668718_-	amidase	NA	NA	NA	NA	NA
AZW66931.1|668787_669543_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69775.1|669511_670270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW66932.1|670280_671162_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW66933.1|671178_671886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZW66934.1|671888_672647_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZW66935.1|672856_674599_+	sulfite reductase	NA	NA	NA	NA	NA
AZW66936.1|674591_675116_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZW66937.1|675155_675950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW66938.1|676117_677191_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66939.1|677289_678240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66940.1|678491_678704_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69776.1|678769_679381_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZW66941.1|679860_680181_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66942.1|680173_680872_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66943.1|680886_681108_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66944.1|681125_682076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69777.1|682751_683201_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZW66945.1|683187_684465_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZW66946.1|684467_685886_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZW69778.1|685914_686970_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZW66947.1|686975_687218_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZW66948.1|687340_687943_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZW66949.1|688371_689322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW66950.1|689339_689987_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZW66951.1|689996_690248_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66952.1|690310_690793_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZW66953.1|690794_690995_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66954.1|690994_691390_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZW66955.1|691386_691785_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZW66956.1|691781_692204_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66957.1|692211_692712_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZW66958.1|692966_693485_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZW66959.1|693494_693824_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZW66960.1|693841_694132_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZW66961.1|694157_696770_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZW66962.1|696779_697139_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66963.1|697206_697740_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZW66964.1|697736_698126_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZW66965.1|698118_702075_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZW66966.1|702079_702496_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66967.1|702714_702978_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZW66968.1|702977_703790_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66969.1|703794_704037_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66970.1|704015_704567_+	lysozyme	NA	NA	NA	NA	NA
AZW66971.1|704548_705082_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZW66972.1|705078_705360_-	hypothetical protein	NA	NA	NA	NA	NA
AZW66973.1|705702_705903_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66974.1|705909_706581_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZW66975.1|706936_707623_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW66976.1|707603_708176_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW66977.1|708241_709972_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZW66978.1|710024_710453_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW66979.1|710455_711136_+	protein TolQ	NA	NA	NA	NA	NA
AZW66980.1|711135_711594_+	protein TolR	NA	NA	NA	NA	NA
AZW66981.1|711630_712605_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZW66982.1|712621_713938_+	protein TolB	NA	NA	NA	NA	NA
AZW66983.1|713969_714467_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZW66984.1|714553_715243_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZW66985.1|715242_716292_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW66986.1|716288_717083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZW66987.1|717251_717602_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66988.1|717577_718135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW66989.1|719059_719278_+	hypothetical protein	NA	NA	NA	NA	NA
AZW66990.1|719264_720215_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	747140	820302	4106374	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZW67011.1|747140_748091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67012.1|748745_749843_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZW67013.1|749876_751142_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZW67014.1|751299_752250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67015.1|752493_753084_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZW69780.1|753099_755544_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW67016.1|755663_756635_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67017.1|756766_757291_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZW67018.1|757250_758201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67019.1|758422_760618_-	DNA methylase	NA	NA	NA	NA	NA
AZW67020.1|760690_761098_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW67021.1|761220_762171_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67022.1|762286_762730_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW67023.1|762792_763587_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW67024.1|763752_764889_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZW67025.1|764959_766093_-	GTPase ObgE	NA	NA	NA	NA	NA
AZW67026.1|766242_766503_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZW67027.1|766536_766848_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZW67028.1|767272_768421_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZW67029.1|768535_769501_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZW67030.1|769769_770636_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67031.1|770766_772815_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW67032.1|772832_774830_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW67033.1|774864_776202_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW67034.1|776464_778318_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67035.1|778372_779854_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW67036.1|779869_780457_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZW69781.1|780539_780719_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67037.1|780905_786026_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZW67038.1|786103_788242_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZW67039.1|788238_789561_+	protein CyaD	NA	NA	NA	NA	NA
AZW67040.1|789562_790987_+	protein CyaE	NA	NA	NA	NA	NA
AZW67041.1|791077_791986_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67042.1|792050_792965_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW67043.1|793802_794486_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW67044.1|794502_795246_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZW67045.1|795275_796136_+	aminotransferase	NA	NA	NA	NA	NA
AZW67046.1|796143_796710_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67047.1|796798_797755_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67048.1|797799_798552_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67049.1|798548_800294_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZW67050.1|800378_801113_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67051.1|801429_802452_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZW67052.1|802467_803190_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67053.1|803334_804342_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZW67054.1|804382_805915_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZW67055.1|805911_807030_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZW67056.1|807026_807809_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW67057.1|807820_808684_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZW69782.1|808702_809800_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67058.1|809868_810795_-	VOC family protein	NA	NA	NA	NA	NA
AZW67059.1|810829_812524_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW67060.1|812723_813659_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZW67061.1|813764_814715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67062.1|814813_815470_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZW67063.1|815617_818326_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZW67064.1|818335_819355_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZW67065.1|819351_820302_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	853049	902313	4106374	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZW67094.1|853049_854000_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69783.1|853972_854572_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67095.1|854573_855008_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW67096.1|855004_855439_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67097.1|855422_856226_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZW67098.1|856242_857058_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZW67099.1|857054_857870_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZW67100.1|858016_858718_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67101.1|858745_860704_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZW67102.1|860786_861737_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67103.1|861957_862626_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW67104.1|862749_863856_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW67105.1|863868_866982_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZW67106.1|866978_868472_+	RND transporter	NA	NA	NA	NA	NA
AZW67107.1|868486_869158_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW67108.1|869201_869696_-	azurin	NA	NA	NA	NA	NA
AZW67109.1|869836_870484_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW69784.1|870587_872636_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW67110.1|872632_874645_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW67111.1|874670_876005_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67112.1|876113_877106_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67113.1|877172_879257_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZW67114.1|879281_880253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67115.1|880381_881383_-	peptidase M14	NA	NA	NA	NA	NA
AZW67116.1|881416_882658_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW67117.1|882738_883662_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZW67118.1|883739_884564_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW69785.1|884760_885777_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW67119.1|885973_886957_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67120.1|888555_889944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW67121.1|889974_890964_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67122.1|891074_892307_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW67123.1|892588_893389_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67124.1|893411_895643_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZW67125.1|896430_896877_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZW67126.1|896898_897645_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZW67127.1|897788_898766_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZW67128.1|899399_900011_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZW67129.1|900004_901222_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZW67130.1|901362_902313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	911925	976865	4106374	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZW67139.1|911925_912876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67140.1|912872_914723_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZW67141.1|915103_915763_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZW67142.1|915850_916003_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67143.1|916111_916279_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67144.1|916290_916971_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZW67145.1|917252_917969_+	flagellar brake protein	NA	NA	NA	NA	NA
AZW67146.1|917983_919285_-	phospholipase	NA	NA	NA	NA	NA
AZW67147.1|921429_924318_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZW67148.1|924541_925894_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW67149.1|925922_926444_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZW67150.1|926440_927895_+	carboxylase	NA	NA	NA	NA	NA
AZW67151.1|927929_928178_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67152.1|928283_929159_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67153.1|929184_930240_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67154.1|930252_931044_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67155.1|931076_932447_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZW67156.1|933623_934574_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67157.1|934626_934848_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67158.1|935007_935220_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67159.1|935339_936458_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW67160.1|936554_936770_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67161.1|936963_937215_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67162.1|937327_938278_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67163.1|938274_938658_-	ferredoxin	NA	NA	NA	NA	NA
AZW67164.1|938712_940530_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZW69787.1|940676_941504_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZW67165.1|941549_942530_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW67166.1|942526_942739_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67167.1|942735_943917_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZW67168.1|944080_944815_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZW67169.1|944816_947429_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZW67170.1|947564_949478_-	S9 family peptidase	NA	NA	NA	NA	NA
AZW67171.1|950093_950504_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW67172.1|950601_951687_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZW67173.1|951785_952736_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67174.1|952732_953707_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67175.1|953831_954743_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZW69788.1|955019_955412_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZW67176.1|955541_956492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67177.1|956521_956704_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZW67178.1|956742_957000_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67179.1|957476_958658_-	MFS transporter	NA	NA	NA	NA	NA
AZW67180.1|958873_959551_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW67181.1|959547_960321_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZW67182.1|960398_960980_-	OmpA family protein	NA	NA	NA	NA	NA
AZW67183.1|961350_964032_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZW67184.1|964031_965165_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZW67185.1|965157_966243_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZW67186.1|966329_967229_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZW67187.1|967225_968554_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZW67188.1|968568_969240_+	cytidylate kinase	NA	NA	NA	NA	NA
AZW67189.1|969412_971143_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZW67190.1|971144_971504_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZW67191.1|971695_972010_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZW67192.1|972052_973273_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZW67193.1|973269_974211_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZW67194.1|974207_975197_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZW67195.1|975231_975816_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZW67196.1|975914_976865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	996265	1059416	4106374	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZW67211.1|996265_997216_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67212.1|997320_998370_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZW69790.1|998507_999524_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW67213.1|1001032_1001605_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZW67214.1|1001664_1002396_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZW69791.1|1002447_1003365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67215.1|1004172_1007352_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW67216.1|1007348_1008731_+	multidrug transporter	NA	NA	NA	NA	NA
AZW67217.1|1008800_1009052_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZW67218.1|1009197_1009848_-	SCO family protein	NA	NA	NA	NA	NA
AZW67219.1|1009998_1012113_-	M3 family peptidase	NA	NA	NA	NA	NA
AZW67220.1|1012188_1013040_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZW67221.1|1013036_1013663_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW67222.1|1013659_1015414_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZW67223.1|1015706_1018412_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZW67224.1|1018424_1020086_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZW67225.1|1020098_1021889_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZW67226.1|1022110_1023286_-	flagellin FliC	NA	NA	NA	NA	NA
AZW67227.1|1023328_1024279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67228.1|1024377_1025118_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZW67229.1|1025312_1027349_+	transketolase	NA	NA	NA	NA	NA
AZW67230.1|1027366_1028377_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZW67231.1|1028494_1029688_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZW67232.1|1029717_1030491_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW67233.1|1030487_1031678_-	acetate kinase	NA	NA	NA	NA	NA
AZW67234.1|1031703_1032642_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZW69792.1|1032638_1034987_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZW67235.1|1035141_1035849_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW67236.1|1035886_1037020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67237.1|1037296_1037845_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZW67238.1|1037863_1038349_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW67239.1|1038526_1039465_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZW67240.1|1039467_1039785_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67241.1|1039830_1040775_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67242.1|1042455_1043106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZW67243.1|1043159_1043495_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67244.1|1043491_1044352_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZW67245.1|1044368_1044650_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67246.1|1044723_1044987_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZW67247.1|1045230_1046181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67248.1|1046479_1047217_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZW67249.1|1047652_1047976_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZW67250.1|1048010_1048571_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZW67251.1|1048691_1049567_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZW67252.1|1049579_1050527_+	motility protein MotB	NA	NA	NA	NA	NA
AZW67253.1|1050628_1050922_+	response regulator	NA	NA	NA	NA	NA
AZW67254.1|1050948_1053006_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZW67255.1|1053020_1053521_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZW67256.1|1053594_1055301_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZW67257.1|1056164_1057217_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZW67258.1|1057269_1057659_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZW67259.1|1057667_1058300_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZW69793.1|1058399_1059416_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	1156527	1218698	4106374	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
AZW67325.1|1156527_1157478_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZW67326.1|1157576_1158209_-	fimbrial protein	NA	NA	NA	NA	NA
AZW67327.1|1158373_1160656_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW67328.1|1160810_1163507_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZW67329.1|1163632_1164121_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW67330.1|1166531_1169402_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZW67331.1|1169447_1170662_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZW67332.1|1170891_1172319_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZW67333.1|1172359_1173508_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZW67334.1|1173520_1174279_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67335.1|1174366_1175269_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67336.1|1175265_1176216_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67337.1|1176345_1177329_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67338.1|1177383_1178106_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW67339.1|1179584_1180940_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZW67340.1|1181020_1183396_-	protein tex	NA	NA	NA	NA	NA
AZW67341.1|1183560_1185636_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZW67342.1|1185697_1186498_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZW67343.1|1186599_1187562_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZW67344.1|1187549_1188305_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZW67345.1|1188412_1190050_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZW67346.1|1190117_1190855_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW67347.1|1190957_1191533_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZW67348.1|1191705_1192242_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67349.1|1192244_1192589_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZW67350.1|1192604_1193450_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZW67351.1|1193488_1194868_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZW67352.1|1194945_1195827_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZW67353.1|1195925_1196876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67354.1|1196872_1197283_-	VOC family protein	NA	NA	NA	NA	NA
AZW67355.1|1197390_1198245_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZW67356.1|1198237_1199200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67357.1|1199245_1200370_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZW69801.1|1200481_1201354_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67358.1|1201478_1202258_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW67359.1|1202411_1203833_+	MFS transporter	NA	NA	NA	NA	NA
AZW67360.1|1204267_1205965_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZW67361.1|1205993_1206116_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69802.1|1206191_1207133_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZW67362.1|1207459_1208206_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67363.1|1208213_1209140_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67364.1|1209261_1210179_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67365.1|1210218_1211172_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67366.1|1211196_1211775_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZW67367.1|1213448_1214057_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67368.1|1214134_1214488_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67369.1|1214571_1215561_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW67370.1|1215763_1216714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67371.1|1216800_1217751_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67372.1|1217747_1218698_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	1269626	1326836	4106374	transposase	Klosneuvirus(16.67%)	51	NA	NA
AZW67410.1|1269626_1270577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67411.1|1274323_1274935_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZW67412.1|1275157_1276618_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZW67413.1|1276714_1278307_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZW67414.1|1278293_1278572_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67415.1|1278630_1278918_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW67416.1|1278919_1280260_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW67417.1|1280355_1281045_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67418.1|1281057_1282488_+	MFS transporter	NA	NA	NA	NA	NA
AZW67419.1|1284212_1285034_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67420.1|1285044_1286616_+	amidohydrolase	NA	NA	NA	NA	NA
AZW67421.1|1286644_1287622_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW67422.1|1287648_1288452_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZW67423.1|1288448_1289243_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW67424.1|1289250_1290486_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW67425.1|1290478_1290913_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW67426.1|1291662_1292613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67427.1|1293234_1294962_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZW67428.1|1295073_1296432_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW67429.1|1296552_1296738_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67430.1|1296724_1297675_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67431.1|1297715_1298786_+	FUSC family protein	NA	NA	NA	NA	NA
AZW67432.1|1298808_1299687_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW67433.1|1299858_1300830_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW67434.1|1300992_1301835_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67435.1|1301996_1302677_+	anti-sigma factor	NA	NA	NA	NA	NA
AZW67436.1|1302670_1303840_+	amine oxidase	NA	NA	NA	NA	NA
AZW67437.1|1303836_1304868_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZW67438.1|1304911_1306153_+	MFS transporter	NA	NA	NA	NA	NA
AZW67439.1|1306187_1307720_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW67440.1|1307800_1308424_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW67441.1|1308454_1309066_+	LysE family translocator	NA	NA	NA	NA	NA
AZW67442.1|1309101_1309572_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZW67443.1|1309746_1309995_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67444.1|1310002_1311007_+	peptidase M20	NA	NA	NA	NA	NA
AZW67445.1|1311043_1312558_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW67446.1|1312561_1313521_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW67447.1|1313549_1314353_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW67448.1|1314354_1315989_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZW67449.1|1316072_1317134_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW67450.1|1317332_1317602_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67451.1|1317605_1318130_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZW67452.1|1318545_1319496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67453.1|1319492_1320563_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZW67454.1|1320635_1321274_+	DedA family protein	NA	NA	NA	NA	NA
AZW67455.1|1321568_1321796_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW67456.1|1321918_1322632_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW67457.1|1322876_1323827_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67458.1|1323930_1324212_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67459.1|1324326_1325775_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW67460.1|1325885_1326836_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	1417068	1469221	4106374	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
AZW67541.1|1417068_1418019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67542.1|1418185_1418539_+	cytochrome C	NA	NA	NA	NA	NA
AZW67543.1|1418551_1418914_+	cytochrome	NA	NA	NA	NA	NA
AZW67544.1|1418955_1419381_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZW67545.1|1419583_1420840_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZW67546.1|1421038_1422019_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67547.1|1422168_1423410_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67548.1|1423508_1424459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67549.1|1424467_1425163_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZW67550.1|1427984_1428584_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZW67551.1|1428594_1430760_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZW67552.1|1430783_1432568_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZW67553.1|1432567_1432657_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZW67554.1|1433351_1433624_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZW67555.1|1433623_1435690_+	cation acetate symporter	NA	NA	NA	NA	NA
AZW67556.1|1435686_1436637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67557.1|1436735_1437686_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67558.1|1437801_1438134_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZW67559.1|1438130_1438817_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZW67560.1|1438803_1439763_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZW69811.1|1439804_1442165_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZW67561.1|1442164_1442797_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZW67562.1|1442859_1444239_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZW67563.1|1444285_1445641_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZW67564.1|1445919_1446168_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67565.1|1446355_1446673_-	virulence factor	NA	NA	NA	NA	NA
AZW67566.1|1446945_1447461_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZW67567.1|1447554_1447716_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67568.1|1447731_1448487_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZW67569.1|1448825_1449032_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67570.1|1449039_1449699_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZW67571.1|1449993_1452198_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW67572.1|1452308_1453532_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZW67573.1|1453654_1454629_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW67574.1|1454696_1455890_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZW67575.1|1455904_1456705_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZW67576.1|1456701_1458558_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZW67577.1|1458554_1459160_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW67578.1|1459178_1460564_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZW67579.1|1461289_1462516_+	transporter	NA	NA	NA	NA	NA
AZW67580.1|1462604_1463387_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW67581.1|1463485_1464436_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67582.1|1464462_1465236_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZW67583.1|1465247_1466489_+	MFS transporter	NA	NA	NA	NA	NA
AZW67584.1|1468270_1469221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	1513146	1572008	4106374	protease,transposase,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZW69812.1|1513146_1513635_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZW67632.1|1513752_1514331_+|protease	protease	protease	NA	NA	NA	NA
AZW67633.1|1514403_1514805_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZW67634.1|1514903_1515854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67635.1|1515860_1516973_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZW67636.1|1517659_1518862_+	MFS transporter	NA	NA	NA	NA	NA
AZW67637.1|1519065_1521726_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67638.1|1521738_1525143_+	nuclease	NA	NA	NA	NA	NA
AZW67639.1|1525810_1528036_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZW67640.1|1528082_1528409_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZW67641.1|1528459_1529068_+	recombination protein RecR	NA	NA	NA	NA	NA
AZW67642.1|1529166_1530117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67643.1|1530186_1530951_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZW67644.1|1530947_1531547_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69813.1|1531650_1532496_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZW67645.1|1532561_1533188_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZW67646.1|1533184_1534135_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67647.1|1534121_1534310_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67648.1|1534233_1535355_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZW67649.1|1535335_1536337_-	aminopeptidase	NA	NA	NA	NA	NA
AZW67650.1|1536442_1537954_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZW67651.1|1537950_1539255_-	peptidase	NA	NA	NA	NA	NA
AZW67652.1|1539366_1539927_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW67653.1|1540194_1540749_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZW67654.1|1541204_1541420_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZW69814.1|1541674_1544272_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZW67655.1|1544268_1545456_+	cupin	NA	NA	NA	NA	NA
AZW67656.1|1546113_1546728_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZW67657.1|1546816_1547944_-	lipoprotein	NA	NA	NA	NA	NA
AZW67658.1|1547955_1548861_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZW67659.1|1549753_1550704_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67660.1|1550885_1551638_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZW67661.1|1551706_1552366_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZW67662.1|1552362_1553091_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZW67663.1|1553103_1555383_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZW67664.1|1555407_1555611_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZW67665.1|1555652_1556300_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZW67666.1|1556420_1557338_-	cytochrome C	NA	NA	NA	NA	NA
AZW67667.1|1557334_1558048_-	cytochrome C	NA	NA	NA	NA	NA
AZW67668.1|1558285_1559056_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67669.1|1559060_1559660_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZW67670.1|1559904_1561395_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZW67671.1|1561453_1561738_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW67672.1|1561734_1561863_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67673.1|1561875_1562031_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67674.1|1562303_1563230_-	YicC family protein	NA	NA	NA	NA	NA
AZW67675.1|1563366_1564107_+	ribonuclease PH	NA	NA	NA	NA	NA
AZW67676.1|1564273_1565650_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW67677.1|1565831_1566737_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW67678.1|1566771_1568511_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZW67679.1|1568388_1570191_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZW67680.1|1570308_1570959_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZW67681.1|1571057_1572008_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	1617180	1672771	4106374	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZW67712.1|1617180_1618131_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67713.1|1618189_1618963_+	oxidoreductase	NA	NA	NA	NA	NA
AZW67714.1|1618955_1620512_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZW67715.1|1620508_1621459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67716.1|1622785_1623388_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67717.1|1623627_1624329_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW67718.1|1624322_1625105_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZW67719.1|1625289_1626240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67720.1|1626338_1627076_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZW67721.1|1627265_1628024_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67722.1|1628070_1629060_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67723.1|1629237_1630206_-	transporter	NA	NA	NA	NA	NA
AZW67724.1|1631745_1632714_+	AAA family ATPase	NA	NA	NA	NA	NA
AZW67725.1|1632722_1633664_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZW67726.1|1634137_1635148_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69818.1|1635138_1636653_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZW67727.1|1636649_1637996_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69819.1|1637998_1639033_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZW67728.1|1639082_1640708_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZW67729.1|1641260_1642211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67730.1|1642315_1643263_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69820.1|1643316_1645131_-	histidine kinase	NA	NA	NA	NA	NA
AZW67731.1|1645123_1645798_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW67732.1|1645927_1649002_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZW67733.1|1649015_1649315_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW69821.1|1649629_1650253_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW67734.1|1650496_1651366_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZW67735.1|1651343_1652288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69822.1|1652373_1653345_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW69823.1|1653412_1654186_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67736.1|1654182_1655379_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW67737.1|1655409_1656360_-	hydrolase	NA	NA	NA	NA	NA
AZW67738.1|1656581_1657271_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW67739.1|1657335_1658091_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67740.1|1658142_1659135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67741.1|1659144_1660098_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67742.1|1660213_1661176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67743.1|1662577_1663006_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67744.1|1663002_1663953_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69824.1|1664246_1664969_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZW67745.1|1665407_1666595_-	MFS transporter	NA	NA	NA	NA	NA
AZW67746.1|1666598_1666979_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67747.1|1668698_1669670_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW67748.1|1669683_1670397_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW67749.1|1670401_1671319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67750.1|1671425_1671722_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67751.1|1671820_1672771_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	1830538	1889808	4106374	protease,tRNA,transposase	Klosneuvirus(40.0%)	49	NA	NA
AZW67870.1|1830538_1831489_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67871.1|1831613_1832423_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW67872.1|1832623_1833574_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67873.1|1834847_1836065_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZW67874.1|1837121_1838024_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67875.1|1838100_1838973_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZW67876.1|1839103_1839472_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZW67877.1|1839529_1840576_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZW67878.1|1840771_1842028_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW67879.1|1842032_1843370_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW67880.1|1843519_1844476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67881.1|1845948_1846299_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67882.1|1846346_1847921_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW67883.1|1847973_1848918_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW67884.1|1848935_1849766_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW67885.1|1849758_1851393_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZW67886.1|1851389_1852745_+	amidase	NA	NA	NA	NA	NA
AZW67887.1|1853651_1855229_+	lipoprotein	NA	NA	NA	NA	NA
AZW67888.1|1855232_1856507_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69831.1|1856604_1856979_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67889.1|1858694_1859828_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZW67890.1|1859865_1860471_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZW67891.1|1860467_1861286_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67892.1|1861357_1863982_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZW67893.1|1863968_1864223_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZW67894.1|1864289_1864871_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67895.1|1865174_1865435_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZW67896.1|1865600_1866224_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZW67897.1|1866223_1866997_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZW67898.1|1866993_1868202_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZW67899.1|1868227_1868701_-	RidA family protein	NA	NA	NA	NA	NA
AZW67900.1|1868774_1869725_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67901.1|1869823_1870774_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67902.1|1870872_1872222_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZW67903.1|1872987_1873743_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZW67904.1|1873835_1876718_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZW67905.1|1877040_1877466_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZW67906.1|1877493_1878642_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZW67907.1|1878638_1879145_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZW67908.1|1879151_1880447_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZW67909.1|1880487_1881792_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW67910.1|1881793_1882432_+	hypothetical protein	NA	NA	NA	NA	NA
AZW67911.1|1882434_1883595_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZW67912.1|1883621_1884977_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZW67913.1|1884980_1886051_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZW67914.1|1886189_1886426_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZW67915.1|1886513_1887620_+	GTPase HflX	NA	NA	NA	NA	NA
AZW67916.1|1887585_1888890_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZW67917.1|1888908_1889808_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	1900048	1957545	4106374	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
AZW67925.1|1900048_1900999_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67926.1|1901097_1902048_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67927.1|1902034_1902235_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67928.1|1902247_1903333_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZW67929.1|1903348_1904110_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW67930.1|1904106_1905030_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZW67931.1|1905128_1905653_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW67932.1|1905661_1906405_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZW67933.1|1906500_1906740_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67934.1|1906753_1906906_-	lipoprotein	NA	NA	NA	NA	NA
AZW67935.1|1906991_1908482_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZW67936.1|1908573_1909512_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZW67937.1|1909508_1909685_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZW67938.1|1909687_1910350_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZW69833.1|1911971_1912115_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZW67939.1|1912111_1913086_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67940.1|1913252_1914203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67941.1|1914199_1915474_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZW67942.1|1915571_1916771_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZW67943.1|1916767_1917421_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW67944.1|1917417_1918854_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZW67945.1|1918841_1919201_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZW67946.1|1921120_1922986_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW69834.1|1923243_1924764_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW67947.1|1924851_1925502_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZW67948.1|1926450_1927746_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZW67949.1|1927767_1928652_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69835.1|1928750_1929626_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZW67950.1|1929615_1929972_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZW67951.1|1930045_1931077_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW67952.1|1931206_1931386_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZW67953.1|1931483_1932008_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZW67954.1|1932018_1932855_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW67955.1|1932967_1933339_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW67956.1|1933335_1933887_+	ATPase	NA	NA	NA	NA	NA
AZW67957.1|1933902_1935594_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZW67958.1|1935642_1936323_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW67959.1|1936570_1937035_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67960.1|1937204_1938134_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW67961.1|1938146_1938794_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67962.1|1938867_1940685_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZW67963.1|1940768_1941719_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67964.1|1942371_1943322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW67965.1|1943340_1943688_-	GFA family protein	NA	NA	NA	NA	NA
AZW67966.1|1943716_1945156_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZW67967.1|1945174_1945570_-	VOC family protein	NA	NA	NA	NA	NA
AZW67968.1|1945744_1946353_+	peptidase S16	NA	NA	NA	NA	NA
AZW67969.1|1946365_1947184_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZW67970.1|1947135_1948110_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW67971.1|1948138_1949200_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67972.1|1949196_1951413_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZW67973.1|1951426_1951885_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZW67974.1|1952042_1952387_-	hypothetical protein	NA	NA	NA	NA	NA
AZW67975.1|1952543_1953449_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69836.1|1953535_1954549_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZW69837.1|1956528_1957545_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	2130627	2194716	4106374	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
AZW68113.1|2130627_2131896_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68114.1|2132466_2132679_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68115.1|2132696_2133428_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68116.1|2133462_2134104_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW68117.1|2134096_2134813_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW68118.1|2136977_2137754_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW68119.1|2137775_2138933_-	thiolase	NA	NA	NA	NA	NA
AZW68120.1|2138929_2139361_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68121.1|2139357_2140161_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW68122.1|2140174_2140630_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW68123.1|2140642_2141614_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW68124.1|2141679_2142903_-	CoA transferase	NA	NA	NA	NA	NA
AZW68125.1|2143130_2144081_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68126.1|2144204_2146658_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZW68127.1|2146846_2148151_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZW68128.1|2148255_2148909_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZW68129.1|2148911_2150222_-	trigger factor	NA	NA	NA	NA	NA
AZW68130.1|2150400_2150979_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZW68131.1|2151090_2151291_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZW68132.1|2151636_2152203_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZW68133.1|2152286_2152490_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZW68134.1|2152796_2153117_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68135.1|2153158_2153440_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68136.1|2153514_2154771_-	autotransporter Phg	NA	NA	NA	NA	NA
AZW68137.1|2155153_2155483_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW68138.1|2157052_2157874_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZW68139.1|2157873_2159013_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZW68140.1|2159019_2159916_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZW68141.1|2159912_2161838_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZW68142.1|2162197_2164810_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW68143.1|2164862_2167163_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZW68144.1|2167159_2168368_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZW68145.1|2168629_2169004_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68146.1|2169000_2169951_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68147.1|2170049_2172044_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZW68148.1|2172103_2173069_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZW68149.1|2173058_2175920_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZW68150.1|2175922_2176429_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZW68151.1|2176533_2177742_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZW68152.1|2177743_2178682_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68153.1|2178843_2179317_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW68154.1|2179313_2180264_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68155.1|2180250_2180430_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68156.1|2180374_2180815_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZW68157.1|2180943_2182173_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZW68158.1|2182211_2183033_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZW68159.1|2183086_2184238_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW68160.1|2184329_2184818_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZW68161.1|2187344_2189918_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW68162.1|2189988_2192562_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW68163.1|2192827_2193028_+	CsbD family protein	NA	NA	NA	NA	NA
AZW68164.1|2193059_2193221_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZW68165.1|2193278_2193617_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZW68166.1|2193765_2194716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	2210686	2268441	4106374	tRNA,transposase	Moraxella_phage(40.0%)	58	NA	NA
AZW69848.1|2210686_2211703_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW68181.1|2211800_2212841_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZW68182.1|2212975_2214268_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZW68183.1|2215627_2216011_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZW68184.1|2216028_2216616_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZW68185.1|2216653_2217604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68186.1|2217702_2218653_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68187.1|2218751_2219312_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZW68188.1|2219308_2219854_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68189.1|2220049_2221078_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68190.1|2221118_2222459_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZW68191.1|2222567_2223572_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW68192.1|2223678_2226279_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZW68193.1|2226377_2227328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68194.1|2227426_2228377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68195.1|2228373_2228646_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69849.1|2228904_2231616_-	autotransporter BapA	NA	NA	NA	NA	NA
AZW68196.1|2232183_2233728_+	cardiolipin synthase	NA	NA	NA	NA	NA
AZW68197.1|2233724_2234075_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AZW68198.1|2234218_2234647_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
AZW68199.1|2234730_2235894_+	alanine racemase	NA	NA	NA	NA	NA
AZW68200.1|2235890_2238332_-	MFS transporter	NA	NA	NA	NA	NA
AZW68201.1|2238416_2240438_+	regulator	NA	NA	NA	NA	NA
AZW68202.1|2240434_2241622_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68203.1|2242948_2243149_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69850.1|2243185_2243884_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68204.1|2244058_2244661_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZW68205.1|2244681_2246484_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AZW68206.1|2246474_2246873_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68207.1|2246869_2247919_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AZW68208.1|2247915_2248716_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZW68209.1|2248727_2249003_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZW68210.1|2248999_2249671_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZW69851.1|2249667_2250747_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZW68211.1|2250743_2251292_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68212.1|2251288_2251798_-	type III secretion protein	NA	NA	NA	NA	NA
AZW68213.1|2251797_2253132_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AZW68214.1|2253136_2253775_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZW68215.1|2253744_2254407_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68216.1|2254399_2255224_-	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AZW68217.1|2255220_2255628_-	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA	NA
AZW68218.1|2255624_2256146_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68219.1|2256150_2256612_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZW68220.1|2256635_2257838_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68221.1|2257867_2258809_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68222.1|2258856_2259342_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZW68223.1|2259357_2259633_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68224.1|2259654_2260272_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68225.1|2260435_2261533_+	TyeA family type III secretion system gatekeeper subunit	NA	NA	NA	NA	NA
AZW68226.1|2261529_2261907_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
AZW68227.1|2261911_2262322_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68228.1|2262318_2262687_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69852.1|2262683_2264783_+	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZW68229.1|2264779_2266060_+	EscD/YscD/HrpQ family type III secretion system inner membrane ring protein	NA	NA	NA	NA	NA
AZW68230.1|2266100_2266400_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68231.1|2266389_2266656_+	type III secretion protein	NA	NA	NA	NA	NA
AZW68232.1|2266691_2267147_-	Tir chaperone family protein	NA	NA	NA	NA	NA
AZW68233.1|2267490_2268441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	2575480	2641980	4106374	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZW68488.1|2575480_2576431_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68489.1|2576800_2577373_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZW68490.1|2577375_2578386_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZW68491.1|2578378_2578879_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZW68492.1|2578889_2579231_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZW68493.1|2579242_2580034_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZW68494.1|2580050_2580320_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZW68495.1|2580342_2581131_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZW69864.1|2581177_2582194_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW68496.1|2582410_2583853_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZW68497.1|2584031_2585651_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZW68498.1|2585771_2587592_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZW68499.1|2587670_2589203_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZW68500.1|2589236_2590883_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZW68501.1|2590952_2591975_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZW68502.1|2591992_2593126_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZW68503.1|2593128_2593818_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZW68504.1|2593817_2594603_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZW68505.1|2594646_2595411_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZW68506.1|2595449_2596871_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZW68507.1|2596936_2597641_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZW68508.1|2597688_2598108_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZW68509.1|2598120_2598528_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZW69865.1|2598711_2599422_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZW68510.1|2599548_2599839_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZW68511.1|2599856_2600339_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZW68512.1|2604844_2605999_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZW69866.1|2606304_2607321_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW68513.1|2607567_2608356_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW68514.1|2608422_2609103_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW68515.1|2609099_2609870_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZW68516.1|2609968_2610919_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68517.1|2610974_2611892_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZW68518.1|2611902_2613081_-	mandelate racemase	NA	NA	NA	NA	NA
AZW68519.1|2613100_2614096_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW68520.1|2615684_2616293_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZW68521.1|2616280_2617321_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW68522.1|2617338_2618301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW68523.1|2618297_2619491_-	CoA transferase	NA	NA	NA	NA	NA
AZW68524.1|2619487_2620285_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZW68525.1|2620310_2621297_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW68526.1|2621315_2623355_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZW69867.1|2623556_2624237_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68527.1|2624250_2625162_-	CoA ester lyase	NA	NA	NA	NA	NA
AZW68528.1|2625158_2625737_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW68529.1|2625875_2626781_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68530.1|2626788_2630208_+	nuclease	NA	NA	NA	NA	NA
AZW68531.1|2630195_2632796_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZW68532.1|2633751_2634384_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68533.1|2634777_2635536_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68534.1|2635532_2636735_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW68535.1|2636922_2637873_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68536.1|2638780_2639926_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZW69868.1|2639945_2640668_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW68537.1|2640784_2640964_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68538.1|2641029_2641980_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	2805585	2925961	4106374	protease,transposase	Agrobacterium_phage(16.67%)	96	NA	NA
AZW68670.1|2805585_2806536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68671.1|2806522_2806717_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68672.1|2806864_2807470_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZW68673.1|2807523_2808837_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZW68674.1|2808911_2809382_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZW68675.1|2809381_2810170_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZW68676.1|2810180_2811833_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZW69880.1|2814031_2814538_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZW68677.1|2814534_2815299_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZW68678.1|2815314_2815599_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZW68679.1|2815663_2816653_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZW68680.1|2816824_2817754_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZW68681.1|2817725_2818412_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZW68682.1|2818445_2818991_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZW68683.1|2819035_2820301_+	peptidase M48	NA	NA	NA	NA	NA
AZW68684.1|2820297_2821200_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZW68685.1|2822381_2823326_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW68686.1|2823420_2824938_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW68687.1|2824979_2826608_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW68688.1|2826715_2827597_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68689.1|2830709_2831084_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZW68690.1|2831108_2831447_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZW68691.1|2831490_2833125_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZW68692.1|2833163_2834510_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZW69881.1|2834617_2836039_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZW68693.1|2836108_2836693_-	nitroreductase	NA	NA	NA	NA	NA
AZW68694.1|2836795_2837746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68695.1|2837880_2838987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68696.1|2838997_2840095_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZW68697.1|2840239_2841445_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZW68698.1|2841451_2841973_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZW68699.1|2841969_2842461_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZW68700.1|2842457_2842709_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZW68701.1|2842689_2843175_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZW68702.1|2843310_2846772_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68703.1|2846768_2847674_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZW68704.1|2847683_2848115_-	lipoprotein	NA	NA	NA	NA	NA
AZW69882.1|2848361_2848865_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZW68705.1|2848876_2850343_+	MFS transporter	NA	NA	NA	NA	NA
AZW68706.1|2850417_2851293_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69883.1|2851289_2852297_-	biotin synthase	NA	NA	NA	NA	NA
AZW68707.1|2852764_2853070_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW68708.1|2853160_2853751_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69884.1|2853941_2854958_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW68709.1|2855149_2857486_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZW68710.1|2857568_2858003_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZW68711.1|2858101_2859052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68712.1|2859150_2860101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68713.1|2860097_2860892_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZW68714.1|2860923_2861628_-	oxidoreductase	NA	NA	NA	NA	NA
AZW68715.1|2861702_2862503_-	SURF1 family protein	NA	NA	NA	NA	NA
AZW68716.1|2862499_2862907_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZW68717.1|2862903_2863545_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZW68718.1|2863537_2865559_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW68719.1|2866798_2868130_+	MFS transporter	NA	NA	NA	NA	NA
AZW68720.1|2868126_2869077_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68721.1|2869175_2870126_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68722.1|2871832_2872138_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68723.1|2872806_2873145_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW68724.1|2877698_2878301_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68725.1|2878397_2879687_+	MFS transporter	NA	NA	NA	NA	NA
AZW68726.1|2879744_2880476_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZW68727.1|2880472_2881276_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZW68728.1|2881272_2882361_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW68729.1|2882357_2883287_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW68730.1|2883435_2884581_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW68731.1|2884602_2885553_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68732.1|2885883_2889705_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW68733.1|2889861_2890530_-	lipoprotein	NA	NA	NA	NA	NA
AZW68734.1|2890534_2892208_-	MCE family protein	NA	NA	NA	NA	NA
AZW68735.1|2892226_2893546_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZW68736.1|2893550_2895902_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZW69885.1|2895921_2898090_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZW68737.1|2898086_2903276_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZW68738.1|2903365_2903680_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZW68739.1|2903907_2904153_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZW68740.1|2904247_2904766_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZW68741.1|2904865_2906071_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZW68742.1|2906186_2907584_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZW68743.1|2907700_2908279_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZW68744.1|2908351_2909743_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZW68745.1|2909910_2910861_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68746.1|2911141_2911762_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZW68747.1|2911758_2912172_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZW68748.1|2912168_2913212_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZW68749.1|2913267_2913456_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68750.1|2913465_2914230_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZW68751.1|2914320_2914977_+	adenylate kinase	NA	NA	NA	NA	NA
AZW68752.1|2915068_2915827_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW68753.1|2915852_2917454_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZW68754.1|2917654_2918659_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZW68755.1|2918759_2919023_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZW68756.1|2919140_2919917_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZW68757.1|2920507_2921458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68758.1|2923841_2924954_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZW68759.1|2925010_2925961_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	2956347	3010577	4106374	transposase	Planktothrix_phage(16.67%)	50	NA	NA
AZW68788.1|2956347_2957298_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68789.1|2957284_2957530_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68790.1|2957418_2958315_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZW68791.1|2960592_2962818_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZW68792.1|2962982_2964071_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZW68793.1|2964027_2964681_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW68794.1|2964728_2965526_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW68795.1|2966057_2967008_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68796.1|2967088_2968237_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW68797.1|2968293_2969244_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68798.1|2969341_2969647_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW68799.1|2969675_2970110_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW68800.1|2970111_2971356_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW68801.1|2971352_2972063_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69887.1|2972077_2972989_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW68802.1|2973351_2973756_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68803.1|2973752_2974211_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68804.1|2974217_2975126_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69888.1|2975122_2975989_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW68805.1|2975975_2976803_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW68806.1|2976813_2977941_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZW68807.1|2979018_2980257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68808.1|2980298_2981561_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW68809.1|2981567_2982320_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW68810.1|2982371_2982557_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68811.1|2982832_2983297_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZW68812.1|2983328_2983988_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZW68813.1|2984132_2986241_+	AsmA family protein	NA	NA	NA	NA	NA
AZW68814.1|2986237_2987188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68815.1|2987291_2987912_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69889.1|2988015_2988756_+	oxidoreductase	NA	NA	NA	NA	NA
AZW68816.1|2989890_2991015_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68817.1|2991060_2991429_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68818.1|2991670_2992621_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68819.1|2993656_2994199_-	hypothetical protein	NA	NA	NA	NA	NA
AZW68820.1|2994403_2994598_+	hypothetical protein	NA	NA	NA	NA	NA
AZW68821.1|2994584_2995535_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68822.1|2995531_2996497_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68823.1|2996566_2997403_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZW68824.1|2997879_2999025_+	porin	NA	NA	NA	NA	NA
AZW68825.1|2999086_3000037_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW68826.1|3000229_3001012_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW69890.1|3001025_3001775_-	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZW69891.1|3001802_3003149_-	MFS transporter	NA	NA	NA	NA	NA
AZW68827.1|3003174_3004104_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW68828.1|3004219_3005125_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW68829.1|3005142_3006342_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW68830.1|3006414_3007107_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZW69892.1|3007155_3009645_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZW68831.1|3009626_3010577_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	3235948	3281167	4106374	holin,transposase	Erwinia_phage(10.0%)	43	NA	NA
AZW69010.1|3235948_3236899_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69011.1|3237188_3237653_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZW69012.1|3237667_3239173_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZW69013.1|3239426_3241034_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW69014.1|3241089_3241995_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW69015.1|3242435_3243386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69016.1|3243484_3244435_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69017.1|3244516_3245098_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZW69907.1|3245522_3245828_+	RND transporter	NA	NA	NA	NA	NA
AZW69018.1|3245841_3247176_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZW69019.1|3247197_3247737_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZW69020.1|3247884_3248349_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZW69021.1|3248491_3249607_-	GTP-binding protein	NA	NA	NA	NA	NA
AZW69022.1|3249883_3250387_-	transcriptional repressor	NA	NA	NA	NA	NA
AZW69023.1|3250524_3250725_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69024.1|3250715_3251438_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZW69025.1|3251434_3252331_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZW69026.1|3252327_3253263_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW69908.1|3253268_3253892_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZW69027.1|3253882_3254851_+	nickel transporter	NA	NA	NA	NA	NA
AZW69028.1|3254899_3257041_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW69029.1|3257053_3258034_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZW69030.1|3258048_3258741_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZW69031.1|3258767_3259679_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZW69032.1|3259721_3260612_-	acyltransferase	NA	NA	NA	NA	NA
AZW69033.1|3260608_3261463_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZW69034.1|3261611_3262910_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZW69035.1|3263020_3263272_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZW69036.1|3263351_3264392_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZW69037.1|3264671_3266090_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZW69038.1|3266160_3266496_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW69039.1|3266495_3267338_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZW69040.1|3267436_3268387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69041.1|3268451_3269423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69042.1|3269486_3270506_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZW69909.1|3270507_3271881_-	MFS transporter	NA	NA	NA	NA	NA
AZW69043.1|3272158_3272839_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZW69044.1|3272851_3274978_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZW69045.1|3274974_3276069_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZW69046.1|3276083_3277343_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW69047.1|3277362_3279087_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZW69048.1|3279325_3280078_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZW69049.1|3280216_3281167_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	3291094	3331094	4106374	protease,tRNA,integrase,transposase	Mycobacterium_phage(50.0%)	28	3313891:3313909	3333778:3333796
AZW69057.1|3291094_3292045_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69058.1|3292031_3292229_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69059.1|3292572_3293346_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW69060.1|3293478_3294489_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW69061.1|3294640_3296296_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW69062.1|3296350_3296692_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW69063.1|3296705_3298145_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW69064.1|3298277_3299093_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69065.1|3299111_3299300_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69066.1|3299286_3300237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69067.1|3301624_3302572_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69068.1|3302798_3303539_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69069.1|3303624_3304575_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69070.1|3306016_3307588_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZW69071.1|3307920_3309774_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69072.1|3309818_3312383_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZW69073.1|3312801_3313752_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3313891:3313909	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZW69074.1|3316617_3317112_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZW69075.1|3318064_3318265_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69076.1|3318261_3319473_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZW69077.1|3319488_3322440_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZW69078.1|3322441_3325561_-	restriction endonuclease	NA	NA	NA	NA	NA
AZW69913.1|3325557_3325698_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZW69079.1|3325708_3326755_-	Fic family protein	NA	NA	NA	NA	NA
AZW69080.1|3327096_3328224_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZW69081.1|3328503_3329595_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZW69082.1|3329667_3330450_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZW69083.1|3330446_3331094_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3333778:3333796	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 24
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	3379981	3500224	4106374	tRNA,transposase	Acinetobacter_phage(20.0%)	100	NA	NA
AZW69120.1|3379981_3380932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69121.1|3381336_3381981_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZW69122.1|3382005_3382590_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZW69123.1|3382690_3383308_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZW69124.1|3383310_3385026_-	urease subunit alpha	NA	NA	NA	NA	NA
AZW69125.1|3385022_3385331_-	urease subunit beta	NA	NA	NA	NA	NA
AZW69126.1|3385347_3385983_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZW69127.1|3386009_3386312_-	urease subunit gamma	NA	NA	NA	NA	NA
AZW69128.1|3386412_3387267_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZW69129.1|3387848_3388121_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW69130.1|3388538_3388946_-	GFA family protein	NA	NA	NA	NA	NA
AZW69131.1|3389315_3390110_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69132.1|3390210_3391446_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW69133.1|3391514_3392531_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW69134.1|3392527_3393919_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW69135.1|3393915_3395112_+	MFS transporter	NA	NA	NA	NA	NA
AZW69136.1|3395108_3396647_-	SpoVR family protein	NA	NA	NA	NA	NA
AZW69137.1|3396643_3397903_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69138.1|3399843_3400794_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69139.1|3401560_3402655_-	CoA transferase	NA	NA	NA	NA	NA
AZW69140.1|3402647_3403982_-	CoA ligase	NA	NA	NA	NA	NA
AZW69141.1|3403935_3404619_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69142.1|3404644_3405808_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW69143.1|3405804_3406806_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW69144.1|3406805_3407678_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW69145.1|3407674_3408424_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZW69146.1|3408420_3409212_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZW69147.1|3409208_3410348_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW69148.1|3410656_3411409_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW69149.1|3411442_3412225_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW69150.1|3412228_3412618_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW69151.1|3413757_3414621_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW69152.1|3414656_3415745_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69153.1|3415741_3416692_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69154.1|3416678_3417047_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69155.1|3417045_3420024_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69156.1|3420950_3421829_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZW69157.1|3422895_3423846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69158.1|3424826_3425777_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69159.1|3425773_3426241_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZW69160.1|3426283_3427054_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW69161.1|3427074_3427875_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZW69162.1|3427885_3429295_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZW69163.1|3429389_3430175_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW69916.1|3430414_3431431_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW69164.1|3431538_3431931_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW69165.1|3432068_3432749_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZW69166.1|3432753_3433752_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW69167.1|3433820_3434771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69168.1|3436275_3436977_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZW69169.1|3436976_3438401_+	ATP-binding protein	NA	NA	NA	NA	NA
AZW69170.1|3439470_3440811_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW69171.1|3440926_3442690_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZW69172.1|3442801_3443680_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZW69173.1|3443792_3444608_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZW69174.1|3444611_3444863_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZW69917.1|3444947_3445964_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW69175.1|3446294_3446516_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69176.1|3448876_3449794_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW69177.1|3450291_3451500_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW69178.1|3451579_3453151_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW69179.1|3453268_3454204_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZW69180.1|3454392_3455337_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZW69181.1|3455405_3455621_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69182.1|3455904_3461622_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZW69183.1|3461627_3462755_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZW69184.1|3462810_3463437_+	aminotransferase	NA	NA	NA	NA	NA
AZW69918.1|3463708_3464725_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW69185.1|3464820_3465531_-	oxidoreductase	NA	NA	NA	NA	NA
AZW69919.1|3465527_3466517_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW69186.1|3466648_3468244_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZW69187.1|3468246_3468984_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69188.1|3469139_3470012_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZW69189.1|3470280_3471501_+	MFS transporter	NA	NA	NA	NA	NA
AZW69190.1|3471497_3472157_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW69191.1|3472228_3472861_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZW69192.1|3472890_3473409_+	flavin reductase	NA	NA	NA	NA	NA
AZW69193.1|3473419_3474529_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW69194.1|3474575_3475430_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZW69195.1|3475431_3476334_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69196.1|3477556_3478507_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69197.1|3480261_3481251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69198.1|3481426_3482215_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZW69199.1|3482211_3483243_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZW69200.1|3483261_3483825_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZW69201.1|3483880_3485401_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZW69202.1|3485664_3486369_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW69203.1|3486376_3487114_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZW69204.1|3487219_3487594_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZW69205.1|3487636_3488926_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69206.1|3488922_3490092_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZW69207.1|3490088_3490928_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZW69208.1|3490987_3491923_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZW69209.1|3491935_3492886_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69210.1|3492984_3493947_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZW69211.1|3493978_3494338_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZW69212.1|3494462_3495365_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZW69213.1|3495366_3497139_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZW69214.1|3497173_3497950_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW69215.1|3499273_3500224_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025343	Bordetella pertussis strain J185 chromosome, complete genome	4106374	3515162	3573234	4106374	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZW69227.1|3515162_3516113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69228.1|3516241_3517375_-	peptidase	NA	NA	NA	NA	NA
AZW69229.1|3517418_3518324_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW69230.1|3518326_3520027_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZW69231.1|3520023_3520944_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW69232.1|3520951_3521929_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW69233.1|3521987_3523022_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW69234.1|3524996_3525233_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69235.1|3525359_3526223_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZW69236.1|3526311_3527133_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW69237.1|3527212_3527950_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW69238.1|3527946_3528939_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZW69239.1|3529052_3529715_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69240.1|3529759_3530908_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW69241.1|3533231_3534182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69242.1|3534522_3535473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69243.1|3535570_3536521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69244.1|3536817_3537315_+	hypothetical protein	NA	NA	NA	NA	NA
AZW69245.1|3537357_3539133_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZW69922.1|3539179_3540007_+	copper resistance protein B	NA	NA	NA	NA	NA
AZW69246.1|3540013_3540748_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW69247.1|3541917_3542712_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW69248.1|3543001_3543592_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW69249.1|3543625_3544954_-	amidase	NA	NA	NA	NA	NA
AZW69250.1|3545028_3546174_-	transporter	NA	NA	NA	NA	NA
AZW69251.1|3546285_3547284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69252.1|3547246_3547681_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZW69253.1|3549197_3550082_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW69254.1|3550078_3551284_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW69255.1|3551280_3552141_-	endonuclease	NA	NA	NA	NA	NA
AZW69256.1|3552253_3554044_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZW69257.1|3554084_3554750_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZW69258.1|3554750_3555059_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZW69923.1|3555224_3556511_-	hypothetical protein	NA	NA	NA	NA	NA
AZW69259.1|3557944_3558895_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW69260.1|3560846_3562061_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZW69261.1|3562166_3563156_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZW69262.1|3563152_3563761_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZW69263.1|3563773_3564403_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZW69264.1|3564399_3565020_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZW69265.1|3565051_3565843_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZW69266.1|3566685_3567150_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZW69267.1|3567168_3568095_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZW69268.1|3568148_3569435_-	cytochrome c	NA	NA	NA	NA	NA
AZW69269.1|3570365_3571238_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZW69270.1|3571234_3572185_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZW69271.1|3572283_3573234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
