assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	1	1268649-1268743	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,PD-DExK	Orphan	GCAGGCAGGCCTGCGCAGCGGGTGCCTGG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA,NA	NA|247aa|up_9|CP024175.1_1257624_1258365_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|up_8|CP024175.1_1258493_1259270_-	PRK06224, PRK06224, citryl-CoA lyase	NA|174aa|up_7|CP024175.1_1259271_1259793_-	cd03446, MaoC_like, MoaC_like    Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain	NA|389aa|up_6|CP024175.1_1259789_1260956_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|251aa|up_5|CP024175.1_1260984_1261737_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|701aa|up_4|CP024175.1_1261991_1264094_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|324aa|up_3|CP024175.1_1264148_1265120_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|350aa|up_2|CP024175.1_1265131_1266181_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|208aa|up_1|CP024175.1_1266181_1266805_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|617aa|up_0|CP024175.1_1266726_1268577_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|290aa|down_0|CP024175.1_1268875_1269745_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|232aa|down_1|CP024175.1_1269815_1270511_+	COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]	NA|170aa|down_2|CP024175.1_1270500_1271010_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|411aa|down_3|CP024175.1_1271006_1272239_+	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters	NA|301aa|down_4|CP024175.1_1272186_1273089_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|324aa|down_5|CP024175.1_1273242_1274214_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|458aa|down_6|CP024175.1_1274252_1275626_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|234aa|down_7|CP024175.1_1275667_1276369_-	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|330aa|down_8|CP024175.1_1276682_1277672_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|154aa|down_9|CP024175.1_1277772_1278234_+	COG1522, Lrp, Transcriptional regulators [Transcription]
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	2	1556780-1556878	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,PD-DExK	Orphan	GCCGGTGCCAGTCCCCCTTGCGGGGACAGGCAC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA,NA	NA|397aa|up_9|CP024175.1_1546742_1547933_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|351aa|up_8|CP024175.1_1547937_1548990_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|341aa|up_7|CP024175.1_1549126_1550149_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|279aa|up_6|CP024175.1_1550240_1551077_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|302aa|up_5|CP024175.1_1551269_1552175_+	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|264aa|up_4|CP024175.1_1552201_1552993_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|231aa|up_3|CP024175.1_1553015_1553708_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|251aa|up_2|CP024175.1_1553729_1554482_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|520aa|up_1|CP024175.1_1554610_1556170_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|182aa|up_0|CP024175.1_1556201_1556747_+	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|419aa|down_0|CP024175.1_1557026_1558283_-	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|565aa|down_1|CP024175.1_1558299_1559994_-	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated	NA|296aa|down_2|CP024175.1_1560151_1561039_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|311aa|down_3|CP024175.1_1561076_1562009_+	PRK00283, xerD, tyrosine recombinase	NA|163aa|down_4|CP024175.1_1562022_1562511_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|193aa|down_5|CP024175.1_1562630_1563209_+	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|134aa|down_6|CP024175.1_1563281_1563683_+	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|371aa|down_7|CP024175.1_1563689_1564802_-	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|401aa|down_8|CP024175.1_1565488_1566691_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|887aa|down_9|CP024175.1_1566894_1569555_+	TIGR03623, TIGR03623, probable DNA repair protein
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	3	4114154-4114235	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,PD-DExK	Orphan	CTGTCCCCGCCGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA|125aa|up_1|CP024175.1_4110598_4110973_-,NA|81aa|down_4|CP024175.1_4118564_4118807_-	NA|327aa|up_9|CP024175.1_4103918_4104899_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|419aa|up_8|CP024175.1_4105097_4106354_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|142aa|up_7|CP024175.1_4106556_4106982_+	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|121aa|up_6|CP024175.1_4107032_4107395_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|118aa|up_5|CP024175.1_4107407_4107761_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|296aa|up_4|CP024175.1_4107921_4108809_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|391aa|up_3|CP024175.1_4108830_4110003_+	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|185aa|up_2|CP024175.1_4110006_4110561_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|125aa|up_1|CP024175.1_4110598_4110973_-	NA	NA|917aa|up_0|CP024175.1_4111306_4114057_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|374aa|down_0|CP024175.1_4114242_4115364_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|down_1|CP024175.1_4115464_4117390_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|127aa|down_2|CP024175.1_4117480_4117861_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|185aa|down_3|CP024175.1_4117868_4118423_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|81aa|down_4|CP024175.1_4118564_4118807_-	NA	NA|363aa|down_5|CP024175.1_4118888_4119977_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|335aa|down_6|CP024175.1_4120034_4121039_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|down_7|CP024175.1_4121153_4122053_+	PRK02155, ppnK, NAD kinase	NA|554aa|down_8|CP024175.1_4122068_4123730_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|140aa|down_9|CP024175.1_4123963_4124383_-	pfam01475, FUR, Ferric uptake regulator family
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	4	4322783-4322992	4,1	CRISPRCasFinder,PILER-CR	no		csa3,DEDDh,DinG,cas3,PD-DExK	Orphan	GTGCCTGTCCCCGCTGGGACAGGCAC,GTGCCTGTCCCCGCTGGGACAGGCAC	26,26	3	5	4322809-4322825|4322852-4322884|4322852-4322892|4322852-4322892|4322852-4322892	CP024175.1_3027692-3027708|CP024175.1_916551-916583|CP024175.1_916543-916583|CP024175.1_4740117-4740157|CP024175.1_4032045-4032005	NA:NA	3,2	3	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA,NA	NA|137aa|up_9|CP024175.1_4313919_4314330_-	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase	NA|276aa|up_8|CP024175.1_4314457_4315285_+	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain	NA|266aa|up_7|CP024175.1_4315281_4316079_+	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs	NA|305aa|up_6|CP024175.1_4316131_4317046_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|267aa|up_5|CP024175.1_4317042_4317843_+	cd05233, SDR_c, classical (c) SDRs	NA|329aa|up_4|CP024175.1_4317877_4318864_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|305aa|up_3|CP024175.1_4318897_4319812_-	cd01945, ribokinase_group_B, Ribokinase-like subgroup B	NA|280aa|up_2|CP024175.1_4319815_4320655_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|399aa|up_1|CP024175.1_4320651_4321848_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|277aa|up_0|CP024175.1_4321844_4322675_-	COG3777, COG3777, Uncharacterized conserved protein [Function unknown]	NA|508aa|down_0|CP024175.1_4323020_4324544_-	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|256aa|down_1|CP024175.1_4324612_4325380_-	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein	NA|322aa|down_2|CP024175.1_4325562_4326528_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|260aa|down_3|CP024175.1_4326549_4327329_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|421aa|down_4|CP024175.1_4327351_4328614_+	PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed	NA|172aa|down_5|CP024175.1_4328610_4329126_+	PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed	NA|288aa|down_6|CP024175.1_4329125_4329989_+	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]	NA|397aa|down_7|CP024175.1_4329985_4331176_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|325aa|down_8|CP024175.1_4331352_4332327_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|713aa|down_9|CP024175.1_4332328_4334467_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	5	4511711-4511804	5	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,cas3,PD-DExK	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA,NA	NA|398aa|up_9|CP024175.1_4500134_4501328_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|CP024175.1_4501394_4502423_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|387aa|up_7|CP024175.1_4502449_4503610_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|CP024175.1_4503747_4504725_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|CP024175.1_4504735_4505707_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|CP024175.1_4505773_4506559_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|CP024175.1_4506551_4507784_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|CP024175.1_4507980_4508736_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|CP024175.1_4508846_4509365_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|CP024175.1_4509361_4511485_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|CP024175.1_4511876_4512347_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|CP024175.1_4512435_4512780_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|CP024175.1_4512879_4514280_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|CP024175.1_4514468_4515383_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|CP024175.1_4515379_4516039_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|CP024175.1_4516128_4517052_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|CP024175.1_4517057_4517513_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_7|CP024175.1_4517509_4518613_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|103aa|down_8|CP024175.1_4518532_4518841_+	pfam04138, GtrA, GtrA-like protein	NA|540aa|down_9|CP024175.1_4518800_4520420_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	6	4559675-4559823	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,PD-DExK	Orphan	CGTACGCCATGAACGCTGGCCGGCCAAGACGGCATCTATCCCGCACGG	48	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA,NA	NA|305aa|up_9|CP024175.1_4549644_4550559_-	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily	NA|269aa|up_8|CP024175.1_4550681_4551488_+	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|435aa|up_7|CP024175.1_4551484_4552789_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|315aa|up_6|CP024175.1_4552785_4553730_+	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|245aa|up_5|CP024175.1_4553843_4554578_+	PRK00241, nudC, NAD(+) diphosphatase	NA|223aa|up_4|CP024175.1_4554605_4555274_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|398aa|up_3|CP024175.1_4555600_4556794_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|335aa|up_2|CP024175.1_4556790_4557795_+	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|322aa|up_1|CP024175.1_4557847_4558813_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|258aa|up_0|CP024175.1_4558814_4559588_+	PRK06494, PRK06494, enoyl-CoA hydratase; Provisional	NA|300aa|down_0|CP024175.1_4560004_4560904_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|351aa|down_1|CP024175.1_4560930_4561983_+	cd13561, PBP2_SsuA_like_4, Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold	NA|266aa|down_2|CP024175.1_4561979_4562777_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|264aa|down_3|CP024175.1_4562838_4563630_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|350aa|down_4|CP024175.1_4563682_4564732_+	cd13561, PBP2_SsuA_like_4, Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold	NA|330aa|down_5|CP024175.1_4564810_4565800_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|277aa|down_6|CP024175.1_4565812_4566643_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|354aa|down_7|CP024175.1_4566696_4567758_-	cd09323, TDT_SLAC1_like, Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes SLAC1 (Slow Anion Channel-Associated 1)	NA|486aa|down_8|CP024175.1_4567754_4569212_-	cd16037, sulfatase_like, uncharacterized sulfatase subfamily	NA|534aa|down_9|CP024175.1_4569352_4570954_-	PRK02106, PRK02106, choline dehydrogenase; Validated
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	7	4785847-4785931	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,PD-DExK	Orphan	GGGTGCCTGTCCCCGCGGGGACAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA,NA	NA|429aa|up_9|CP024175.1_4777854_4779141_-	pfam00034, Cytochrom_C, Cytochrome c	NA|251aa|up_8|CP024175.1_4779151_4779904_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|CP024175.1_4780075_4780948_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|CP024175.1_4780944_4781895_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|CP024175.1_4781891_4782464_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|CP024175.1_4782460_4783399_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|CP024175.1_4783465_4783999_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|201aa|up_2|CP024175.1_4783998_4784601_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|CP024175.1_4784597_4785341_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|CP024175.1_4785337_4785829_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|CP024175.1_4786030_4786819_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|CP024175.1_4787080_4787983_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|CP024175.1_4787982_4788729_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|CP024175.1_4788778_4789354_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|CP024175.1_4789566_4791060_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|CP024175.1_4791070_4792126_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|CP024175.1_4792151_4793288_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|CP024175.1_4793284_4795237_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|CP024175.1_4795250_4795814_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|CP024175.1_4795800_4796685_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
GCA_004006815.1_ASM400681v1	CP024175	Bordetella bronchiseptica strain A345 chromosome, complete genome	8	4801359-4801433	8	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,PD-DExK	Orphan	CGGGAGCCAGTCCCCGCGGGGAC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,PD-DExK	NA,NA	NA|498aa|up_9|CP024175.1_4789566_4791060_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|up_8|CP024175.1_4791070_4792126_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|up_7|CP024175.1_4792151_4793288_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|up_6|CP024175.1_4793284_4795237_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|up_5|CP024175.1_4795250_4795814_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|up_4|CP024175.1_4795800_4796685_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|348aa|up_3|CP024175.1_4796773_4797817_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|103aa|up_2|CP024175.1_4798046_4798355_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|up_1|CP024175.1_4798357_4799896_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|485aa|up_0|CP024175.1_4799898_4801353_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|236aa|down_0|CP024175.1_4801450_4802158_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|263aa|down_1|CP024175.1_4802262_4803051_+	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|465aa|down_2|CP024175.1_4803423_4804818_+	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|213aa|down_3|CP024175.1_4804854_4805493_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|289aa|down_4|CP024175.1_4805680_4806547_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|305aa|down_5|CP024175.1_4806705_4807620_-	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|364aa|down_6|CP024175.1_4807716_4808808_+	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase	NA|464aa|down_7|CP024175.1_4808850_4810242_-	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|149aa|down_8|CP024175.1_4810314_4810761_-	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|224aa|down_9|CP024175.1_4810937_4811609_+	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator
