assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003994735.1_ASM399473v1	CP034707	Salmonella enterica subsp. enterica serovar Waycross strain RSE24 chromosome, complete genome	1	595491-595882	1	PILER-CR	no		PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	CAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATC	50	0	0	NA	NA	NA	3	3	Orphan	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|55aa|down_7|CP034707.1_608349_608514_-	NA|348aa|up_9|CP034707.1_584248_585292_-	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase	NA|458aa|up_8|CP034707.1_585335_586709_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|95aa|up_7|CP034707.1_586712_586997_-	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|155aa|up_6|CP034707.1_587027_587492_-	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|424aa|up_5|CP034707.1_587506_588778_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|285aa|up_4|CP034707.1_588897_589752_-	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|524aa|up_3|CP034707.1_590008_591580_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|CP034707.1_592109_592880_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP034707.1_592905_593796_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP034707.1_593893_595039_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|CP034707.1_596839_597778_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|CP034707.1_597875_598865_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|CP034707.1_598885_600217_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|CP034707.1_600283_601492_+	PRK12379, PRK12379, propionate kinase	NA|455aa|down_4|CP034707.1_603889_605254_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_5|CP034707.1_605569_606901_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_6|CP034707.1_606926_608237_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_7|CP034707.1_608349_608514_-	NA	NA|234aa|down_8|CP034707.1_608537_609239_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_9|CP034707.1_609343_610240_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold
GCA_003994735.1_ASM399473v1	CP034707	Salmonella enterica subsp. enterica serovar Waycross strain RSE24 chromosome, complete genome	2	938475-939297	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,13,13	13	TypeI-E	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|447aa|up_9|CP034707.1_922898_924239_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|CP034707.1_924259_925600_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|CP034707.1_925677_926820_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_6|CP034707.1_926863_929620_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|CP034707.1_929677_930973_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|CP034707.1_931024_933259_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|CP034707.1_933333_934125_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP034707.1_934352_935990_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP034707.1_936072_937371_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP034707.1_937506_938178_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP034707.1_939394_940192_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP034707.1_940282_940645_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|CP034707.1_941079_942879_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|CP034707.1_942878_944591_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|318aa|down_4|CP034707.1_945487_946441_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|887aa|down_5|CP034707.1_946884_949545_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_6|CP034707.1_950039_951596_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|down_7|CP034707.1_951592_952141_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_8|CP034707.1_952154_953213_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|CP034707.1_953223_953970_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCA_003994735.1_ASM399473v1	CP034707	Salmonella enterica subsp. enterica serovar Waycross strain RSE24 chromosome, complete genome	3	955909-957030	3,2,2,4,3,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGAN,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,31,30,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	11,16,18,11,16,11	18	TypeI-E	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|571aa|up_9|CP034707.1_942878_944591_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|318aa|up_8|CP034707.1_945487_946441_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|887aa|up_7|CP034707.1_946884_949545_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP034707.1_950039_951596_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|up_5|CP034707.1_951592_952141_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP034707.1_952154_953213_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP034707.1_953223_953970_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP034707.1_953951_954602_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP034707.1_954598_955519_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034707.1_955518_955812_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034707.1_957044_958091_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034707.1_958341_959250_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034707.1_959259_960699_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|119aa|down_3|CP034707.1_961307_961664_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_4|CP034707.1_961854_962166_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|CP034707.1_962184_962895_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|CP034707.1_962894_963374_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|CP034707.1_963370_964420_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|CP034707.1_964400_965162_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|CP034707.1_965155_965782_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
