assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003994675.1_ASM399467v1	CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	2	1002242-1003431	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG	29,29,29	1	1	1003371-1003402	CP034697.1_836458-836427	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|57aa|down_2|CP034697.1_1004706_1004877_+	NA|447aa|up_9|CP034697.1_986635_987976_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|CP034697.1_987996_989337_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|CP034697.1_989414_990557_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|CP034697.1_990629_993386_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|CP034697.1_993443_994739_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|CP034697.1_994790_997025_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|CP034697.1_997099_997891_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP034697.1_998118_999756_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP034697.1_999838_1001137_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP034697.1_1001273_1001945_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP034697.1_1003528_1004326_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP034697.1_1004415_1004778_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP034697.1_1004706_1004877_+	NA	NA|600aa|down_3|CP034697.1_1005205_1007005_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP034697.1_1007004_1008717_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP034697.1_1008732_1009467_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP034697.1_1009554_1010508_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|898aa|down_7|CP034697.1_1010892_1013586_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|down_8|CP034697.1_1013753_1014053_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_9|CP034697.1_1014062_1014404_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003994675.1_ASM399467v1	CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	3	1020734-1022409	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	27,27,27	27	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	cas3|898aa|up_9|CP034697.1_1010892_1013586_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|CP034697.1_1013753_1014053_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|CP034697.1_1014062_1014404_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|CP034697.1_1014761_1016297_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP034697.1_1016313_1016916_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP034697.1_1016932_1017997_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP034697.1_1018006_1018732_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP034697.1_1018731_1019436_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP034697.1_1019435_1020353_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034697.1_1020355_1020649_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034697.1_1022423_1023470_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034697.1_1023721_1024630_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034697.1_1024639_1026079_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP034697.1_1026065_1026671_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP034697.1_1026688_1027045_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP034697.1_1027235_1027547_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP034697.1_1027565_1028276_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP034697.1_1028275_1028755_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP034697.1_1028751_1029801_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP034697.1_1029781_1030543_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003994675.1_ASM399467v1	CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4	2179034-2181075	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACC,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	32,33,33	33	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|62aa|up_5|CP034697.1_2169909_2170095_+,NA|91aa|down_9|CP034697.1_2192671_2192944_-	NA|118aa|up_9|CP034697.1_2165449_2165803_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|461aa|up_8|CP034697.1_2166021_2167404_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_7|CP034697.1_2167404_2168055_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_6|CP034697.1_2168047_2169844_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|62aa|up_5|CP034697.1_2169909_2170095_+	NA	NA|466aa|up_4|CP034697.1_2170182_2171580_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|CP034697.1_2171965_2175709_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|CP034697.1_2175705_2177241_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|CP034697.1_2177237_2177948_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|CP034697.1_2177947_2178625_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|CP034697.1_2181815_2182658_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|CP034697.1_2182708_2183167_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|302aa|down_2|CP034697.1_2183277_2184183_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|CP034697.1_2184273_2185287_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_4|CP034697.1_2185489_2186398_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_5|CP034697.1_2186531_2186945_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|CP034697.1_2187607_2188225_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|CP034697.1_2188420_2191099_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|CP034697.1_2191575_2192223_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|91aa|down_9|CP034697.1_2192671_2192944_-	NA
