The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	75841	117064	4861251	transposase	uncultured_virus(18.18%)	39	NA	NA
AZT53139.1|75841_76771_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	52.2	3.5e-66
AZT53140.1|76813_77716_-	EamA family transporter	NA	NA	NA	NA	NA
AZT53141.1|78224_78920_+	MgtC family protein	NA	G3MA03	Bacillus_virus	42.4	2.8e-15
AZT53142.1|79136_81863_+	magnesium-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	25.0	1.9e-35
AZT53143.1|81884_81977_+	protein MgtR	NA	NA	NA	NA	NA
AZT53144.1|82177_82657_+	hypothetical protein	NA	NA	NA	NA	NA
AZT53145.1|82771_83452_-	isochorismatase family protein	NA	NA	NA	NA	NA
AZT53146.1|84071_84185_+	hypothetical protein	NA	NA	NA	NA	NA
AZT53147.1|84351_85116_+	transcriptional regulator	NA	NA	NA	NA	NA
AZT57440.1|85126_85591_+	hypothetical protein	NA	NA	NA	NA	NA
AZT53148.1|85685_88538_-	intestinal colonization autotransporter adhesin MisL	NA	A0A2L1IV18	Escherichia_phage	44.8	3.8e-95
AZT53149.1|88612_89230_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZT53150.1|90284_91007_-	TIGR02646 family protein	NA	NA	NA	NA	NA
AZT53151.1|91003_91225_-	hypothetical protein	NA	NA	NA	NA	NA
AZT53152.1|93078_93423_+	hypothetical protein	NA	NA	NA	NA	NA
AZT53153.1|93448_93631_-	hypothetical protein	NA	NA	NA	NA	NA
AZT53154.1|93776_94079_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57441.1|94113_94713_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
AZT53155.1|95061_95400_-	toxin	NA	NA	NA	NA	NA
AZT53156.1|95424_95751_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
AZT53157.1|95793_96267_-	DNA repair protein RadC	NA	NA	NA	NA	NA
AZT53158.1|96321_97140_-	DUF945 domain-containing protein	NA	A0A2C9CYF8	Yersinia_phage	37.6	8.8e-45
AZT53159.1|97604_98228_+	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AZT53160.1|98346_98562_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	41.8	5.2e-05
AZT53161.1|99106_100495_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AZT53162.1|100547_101710_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	42.6	4.7e-52
AZT53163.1|101756_102059_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AZT53164.1|103049_104585_+	SAM-dependent methyltransferase	NA	A0A220A2U5	Liberibacter_phage	29.5	2.0e-18
AZT53165.1|104584_106297_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AZT53166.1|106312_107971_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZT53167.1|107967_108810_+	hypothetical protein	NA	NA	NA	NA	NA
AZT53168.1|109231_110343_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	7.6e-07
AZT53169.1|110316_110598_+	hypothetical protein	NA	NA	NA	NA	NA
AZT53170.1|111703_112048_-	hypothetical protein	NA	NA	NA	NA	NA
AZT53171.1|112109_112649_-	hypothetical protein	NA	NA	NA	NA	NA
AZT53172.1|112942_113257_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AZT53173.1|113243_113579_+|transposase	transposase	transposase	NA	NA	NA	NA
AZT53174.1|113606_115157_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	40.1	5.5e-80
AZT53175.1|115513_117064_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	40.1	5.5e-80
>prophage 2
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	1194402	1287153	4861251	portal,transposase,holin,integrase,tail,capsid,terminase,head,tRNA	Cronobacter_phage(52.38%)	80	1188506:1188522	1248454:1248470
1188506:1188522	attL	CCCGGCGTACTGTTCAG	NA	NA	NA	NA
AZT54165.1|1194402_1195514_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	7.6e-07
AZT57472.1|1197081_1198245_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZT54166.1|1198252_1200433_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
AZT54167.1|1200429_1201839_-	type I secretion protein TolC	NA	NA	NA	NA	NA
AZT54168.1|1201903_1213378_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
AZT54169.1|1213996_1214479_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
AZT54170.1|1214628_1215105_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AZT54171.1|1215094_1215385_+	RnfH family protein	NA	NA	NA	NA	NA
AZT54172.1|1215553_1215892_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AZT54173.1|1216040_1217702_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AZT54174.1|1217787_1218666_-	NAD(+) kinase	NA	NA	NA	NA	NA
AZT57473.1|1218789_1219380_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AZT54175.1|1219583_1220189_-	cytoplasmic protein	NA	NA	NA	NA	NA
AZT54176.1|1220316_1221558_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AZT54177.1|1221622_1222414_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AZT57474.1|1222359_1222554_-	hypothetical protein	NA	NA	NA	NA	NA
AZT54178.1|1222579_1223941_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZT54179.1|1224282_1224531_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZT57475.1|1224549_1225098_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZT54180.1|1225142_1225910_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZT54181.1|1225950_1226298_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZT54182.1|1226453_1227674_-	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
AZT54183.1|1227666_1228185_-	YfiR family protein	NA	NA	NA	NA	NA
AZT54184.1|1228625_1229696_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	1.4e-90
AZT54185.1|1229705_1230827_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AZT54186.1|1230884_1231793_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
AZT54187.1|1231753_1232914_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
AZT57476.1|1233013_1233061_-	hypothetical protein	NA	NA	NA	NA	NA
AZT54188.1|1233224_1234244_-|integrase	integrase	integrase	A0A0F7LBR0	Escherichia_phage	56.6	4.5e-107
AZT54189.1|1234283_1234583_-	XRE family transcriptional regulator	NA	Q1JS21	Enterobacteria_phage	55.3	7.7e-23
AZT54190.1|1234686_1234974_+	hypothetical protein	NA	NA	NA	NA	NA
AZT54191.1|1235007_1235328_+	hypothetical protein	NA	NA	NA	NA	NA
AZT54192.1|1235343_1235913_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	47.4	1.5e-43
AZT54193.1|1235915_1236134_+	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	45.0	3.6e-06
AZT57477.1|1236173_1238828_+	toprim domain-containing protein	NA	A0A077K8T2	Ralstonia_phage	46.6	7.3e-242
AZT57478.1|1238965_1239925_+	hypothetical protein	NA	NA	NA	NA	NA
AZT54194.1|1239970_1240300_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	58.2	1.1e-27
AZT54195.1|1240299_1241319_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	68.5	1.0e-135
AZT54196.1|1241315_1243100_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	69.7	3.5e-248
AZT54197.1|1243243_1244080_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	48.7	3.1e-45
AZT54198.1|1244114_1245143_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	71.6	1.7e-133
AZT54199.1|1245154_1245853_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	2.7e-63
AZT54200.1|1245951_1246404_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	64.0	3.6e-48
AZT54201.1|1246400_1246883_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	49.4	1.8e-37
AZT54202.1|1246879_1247584_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	59.9	1.8e-70
AZT54203.1|1247580_1248708_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.5	7.3e-175
1248454:1248470	attR	CTGAACAGTACGCCGGG	NA	NA	NA	NA
AZT54204.1|1248704_1249160_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
AZT54205.1|1249169_1249463_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	3.7e-14
AZT54206.1|1249459_1249801_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
AZT54207.1|1249800_1250133_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.0	2.6e-35
AZT54208.1|1250104_1250293_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	79.0	4.1e-22
AZT54209.1|1250279_1250537_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
AZT54210.1|1250724_1252695_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	68.9	7.1e-266
AZT54211.1|1252691_1253021_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
AZT54212.1|1253017_1254202_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
AZT54213.1|1254194_1254782_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	8.4e-90
AZT54214.1|1254791_1256819_+|tail	phage tail protein	tail	F1BUK3	Cronobacter_phage	47.7	4.0e-155
AZT57479.1|1256836_1257364_+|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	52.6	3.1e-51
AZT54215.1|1257353_1258079_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
AZT54216.1|1258050_1258596_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	73.1	1.5e-64
AZT57480.1|1258598_1260299_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	5.8e-224
AZT54217.1|1261404_1262016_+	iron-sulfur cluster assembly scaffold protein SufA	NA	NA	NA	NA	NA
AZT54218.1|1262027_1262408_+	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA	NA
AZT54219.1|1262547_1262886_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
AZT54220.1|1263157_1263895_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZT54221.1|1264026_1265007_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
AZT54222.1|1265003_1265735_+	polyphenol oxidase	NA	NA	NA	NA	NA
AZT54223.1|1265864_1268438_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
AZT54224.1|1274505_1274961_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	1.7e-34
AZT54225.1|1275064_1276366_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.1	2.6e-43
AZT54226.1|1276362_1276686_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
AZT57481.1|1276730_1278086_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZT54227.1|1278200_1280861_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
AZT54228.1|1280897_1281596_-	DTW domain-containing protein	NA	NA	NA	NA	NA
AZT54229.1|1281668_1282088_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
AZT54230.1|1282291_1283329_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
AZT54231.1|1283443_1284133_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	2.1e-55
AZT54232.1|1284451_1284835_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
AZT54233.1|1284951_1286286_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
AZT54234.1|1286415_1287153_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 3
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	1744653	1753220	4861251	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
AZT54639.1|1744653_1745601_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.9e-23
AZT54640.1|1745584_1746316_+	ABC transporter permease	NA	NA	NA	NA	NA
AZT54641.1|1746296_1746404_-	protein YohO	NA	NA	NA	NA	NA
AZT54642.1|1746463_1747195_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AZT54643.1|1747417_1749103_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.6	2.9e-276
AZT54644.1|1749099_1749819_+	two-component system response regulator YehT	NA	NA	NA	NA	NA
AZT54645.1|1749865_1750336_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.4	8.0e-75
AZT54646.1|1750487_1750946_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	74.5	8.9e-55
AZT54647.1|1751186_1753220_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.8e-55
>prophage 4
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	1816679	1825398	4861251		Enterobacteria_phage(42.86%)	8	NA	NA
AZT54696.1|1816679_1818083_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	1.7e-19
AZT54697.1|1818259_1819153_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	41.6	7.4e-45
AZT54698.1|1819531_1820617_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.4	3.0e-101
AZT54699.1|1820616_1821516_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	6.7e-30
AZT54700.1|1821563_1822442_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	1.9e-106
AZT54701.1|1822446_1822980_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.2	1.8e-51
AZT54702.1|1823003_1824263_+	flippase	NA	NA	NA	NA	NA
AZT54703.1|1824264_1825398_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.0	1.3e-30
>prophage 5
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	2910150	2937612	4861251	tail,protease,transposase	Escherichia_phage(27.27%)	31	NA	NA
AZT55718.1|2910150_2910756_+|tail	tail fiber assembly protein	tail	A0A1C9IHT8	Salmonella_phage	50.0	1.4e-26
AZT55719.1|2910870_2912079_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.3	2.1e-50
AZT55720.1|2912193_2912523_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55721.1|2912697_2912913_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57537.1|2913018_2913198_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55722.1|2913176_2913392_+	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	48.0	8.0e-06
AZT55723.1|2913447_2913747_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55724.1|2913925_2914237_+	cytoplasmic protein	NA	NA	NA	NA	NA
AZT55725.1|2914233_2914653_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZT55726.1|2914813_2915326_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55727.1|2915461_2915842_-	hypothetical protein	NA	A0A0P0IE45	Acinetobacter_phage	41.7	1.3e-14
AZT55728.1|2915841_2916225_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55729.1|2916492_2917654_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	42.6	4.7e-52
AZT55730.1|2918769_2921367_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55731.1|2921545_2923000_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZT57538.1|2923109_2923436_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZT55732.1|2923474_2923702_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55733.1|2923747_2924859_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	7.6e-07
AZT55734.1|2925879_2926461_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AZT55735.1|2926573_2927452_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZT55736.1|2927974_2928682_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZT55737.1|2928681_2929071_-	amino acid-binding protein	NA	NA	NA	NA	NA
AZT55738.1|2929534_2930697_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	42.6	4.7e-52
AZT57539.1|2931418_2932627_+	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	67.2	1.5e-154
AZT55739.1|2932638_2933703_+	enterohemolysin	NA	A0A0U2S5Y9	Escherichia_phage	52.7	1.3e-93
AZT55740.1|2933742_2934072_+	transcriptional regulator	NA	NA	NA	NA	NA
AZT55741.1|2934068_2934449_+	DUF2591 domain-containing protein	NA	NA	NA	NA	NA
AZT55742.1|2934436_2934622_+	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	65.5	3.6e-15
AZT55743.1|2934635_2935052_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55744.1|2935128_2935383_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZT55745.1|2936952_2937612_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	1.6e-44
>prophage 6
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	2975215	2991092	4861251	transposase,tRNA	Salmonella_phage(47.06%)	20	NA	NA
AZT55778.1|2975215_2976327_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	7.6e-07
AZT55779.1|2976928_2977624_-	phage replication protein	NA	G8C7U6	Escherichia_phage	45.9	3.2e-56
AZT55780.1|2977620_2978457_-	replication protein	NA	K7PGT1	Enterobacteria_phage	48.5	9.3e-50
AZT55781.1|2978548_2978923_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	3.3e-63
AZT55782.1|2978888_2979116_-	Rha family transcriptional regulator	NA	K7PKS2	Enterobacteria_phage	95.9	1.5e-34
AZT55783.1|2979129_2979597_+	helix-turn-helix domain-containing protein	NA	K7PHG0	Enterobacteria_phage	83.9	3.9e-66
AZT55784.1|2980400_2981562_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	42.6	4.7e-52
AZT55785.1|2981754_2982582_+	DUF3037 domain-containing protein	NA	NA	NA	NA	NA
AZT55786.1|2982617_2982824_-	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	69.1	1.9e-17
AZT55787.1|2983115_2983340_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55788.1|2983332_2983533_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AZT55789.1|2983623_2983920_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	100.0	1.1e-48
AZT55790.1|2983925_2984711_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	98.9	8.2e-149
AZT55791.1|2984707_2985388_+	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	97.3	4.3e-130
AZT55792.1|2985384_2986254_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	94.8	1.3e-158
AZT57540.1|2986259_2986499_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
AZT55793.1|2986539_2986788_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AZT55794.1|2986832_2988125_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	7.7e-253
AZT55795.1|2988319_2989522_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AZT55796.1|2989691_2991092_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.9	2.6e-81
>prophage 7
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	3017794	3129948	4861251	portal,transposase,protease,holin,tail,capsid,terminase,head,tRNA	Enterobacteria_phage(27.94%)	108	NA	NA
AZT55817.1|3017794_3018556_-|protease	metalloprotease	protease	NA	NA	NA	NA
AZT55818.1|3018699_3019983_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZT55819.1|3020053_3021142_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.5	2.8e-78
AZT55820.1|3021327_3022020_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AZT55821.1|3022155_3023916_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AZT55822.1|3024320_3025178_+	formate transporter FocA	NA	NA	NA	NA	NA
AZT55823.1|3025235_3027518_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.9	4.2e-161
AZT55824.1|3027593_3028553_-	type III secretion system effector SopD2	NA	NA	NA	NA	NA
AZT55825.1|3029137_3029935_+	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	2.7e-22
AZT55826.1|3030120_3033324_-	invasin/intimin	NA	NA	NA	NA	NA
AZT55827.1|3034084_3035506_-	amino acid permease	NA	NA	NA	NA	NA
AZT55828.1|3035723_3036872_-	MFS transporter	NA	NA	NA	NA	NA
AZT55829.1|3037183_3037810_+	hydrolase	NA	NA	NA	NA	NA
AZT55830.1|3037864_3038728_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
AZT55831.1|3038729_3039347_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
AZT55832.1|3039357_3041802_-	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.7	1.2e-222
AZT55833.1|3042038_3043331_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
AZT55834.1|3043590_3044934_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.9	3.6e-80
AZT55835.1|3044943_3045555_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZT55836.1|3045697_3049720_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.9e-88
AZT55837.1|3049854_3050349_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
AZT55838.1|3050896_3051865_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	45.2	1.1e-62
AZT55839.1|3051979_3053746_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.8	2.3e-21
AZT55840.1|3053746_3055468_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	23.3	4.9e-13
AZT55841.1|3055512_3056217_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AZT55842.1|3056217_3056601_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55843.1|3056528_3056747_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZT55844.1|3056837_3057749_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZT55845.1|3057857_3058718_+	pirin family protein	NA	NA	NA	NA	NA
AZT55846.1|3058737_3059415_+	hydrolase	NA	NA	NA	NA	NA
AZT55847.1|3059839_3062116_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.1	8.1e-165
AZT55848.1|3062146_3062467_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AZT55849.1|3062790_3063012_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AZT55850.1|3063100_3065047_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.9	1.2e-39
AZT55851.1|3065043_3066162_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.8e-08
AZT55852.1|3066289_3067258_+	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AZT55853.1|3067254_3068913_-	ATP-dependent endonuclease	NA	NA	NA	NA	NA
AZT55854.1|3069113_3070013_+	lysine exporter LysO family protein	NA	NA	NA	NA	NA
AZT55855.1|3070156_3071809_+	hydroxylamine reductase	NA	NA	NA	NA	NA
AZT57541.1|3071820_3072789_+	NADH oxidoreductase	NA	NA	NA	NA	NA
AZT55856.1|3072948_3074667_+	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.2	6.4e-29
AZT55857.1|3074705_3075707_+	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
AZT55858.1|3075717_3077151_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZT55859.1|3077246_3078260_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZT55860.1|3078256_3079087_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.1	1.1e-07
AZT55861.1|3079083_3079407_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
AZT55862.1|3079725_3079950_+	DinI family protein	NA	K7PKR6	Enterobacteria_phage	87.1	3.2e-26
AZT55863.1|3080670_3081489_+	cytolethal distending toxin subunit B family protein	NA	A5LH53	Enterobacteria_phage	50.5	5.5e-63
AZT55864.1|3081678_3082056_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	1.3e-14
AZT55865.1|3082966_3083695_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.9	1.6e-61
AZT55866.1|3084723_3085296_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	84.0	1.3e-87
AZT55867.1|3085285_3086110_-|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	93.4	1.1e-146
AZT55868.1|3086106_3088227_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	54.1	2.9e-84
AZT55869.1|3088292_3089651_-	SGNH/GDSL hydrolase family protein	NA	A0A223LJ40	Erwinia_phage	54.6	2.5e-129
AZT55870.1|3089653_3089956_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55871.1|3089952_3090531_-|tail	phage tail protein	tail	Q687E6	Enterobacteria_phage	62.6	2.8e-29
AZT55872.1|3090560_3093956_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	74.6	0.0e+00
AZT55873.1|3094018_3094666_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	80.0	9.9e-92
AZT55874.1|3094563_3095301_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.4	8.8e-129
AZT55875.1|3096014_3096344_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	72.2	2.5e-43
AZT55876.1|3096346_3099499_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	52.6	8.4e-261
AZT55877.1|3099470_3099788_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	64.2	7.3e-32
AZT55878.1|3099805_3100201_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.2	8.6e-30
AZT55879.1|3100246_3100990_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	72.5	1.1e-94
AZT55880.1|3101000_3101402_-|tail	phage tail protein	tail	A0A291AWY2	Escherichia_phage	70.5	3.1e-51
AZT55881.1|3101398_3101983_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	78.1	2.4e-76
AZT55882.1|3101986_3102346_-|tail	phage tail protein	tail	K7P6U9	Enterobacteria_phage	69.2	1.3e-40
AZT55883.1|3102356_3102716_-	DNA packaging protein	NA	NA	NA	NA	NA
AZT55884.1|3102773_3103802_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	2.3e-114
AZT55885.1|3103856_3104204_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	7.1e-20
AZT55886.1|3104216_3105713_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.8	2.1e-97
AZT55887.1|3105702_3107283_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.6	8.1e-188
AZT55888.1|3107279_3107483_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
AZT55889.1|3107466_3109398_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	1.3e-259
AZT55890.1|3109369_3109915_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	79.9	2.5e-56
AZT55891.1|3110173_3110677_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55892.1|3110779_3111322_-	DUF2514 family protein	NA	NA	NA	NA	NA
AZT55893.1|3111318_3111933_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	83.8	3.7e-96
AZT55894.1|3111932_3112214_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	81.7	5.1e-37
AZT55895.1|3112200_3112590_-	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	71.0	6.9e-40
AZT55896.1|3112878_3113304_-	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA	NA
AZT57542.1|3113230_3113785_-	hypothetical protein	NA	A0A0U2KD26	Escherichia_phage	65.2	6.1e-50
AZT55897.1|3114040_3115234_+|transposase	IS4 family transposase	transposase	S5FM71	Shigella_phage	64.7	4.1e-144
AZT55898.1|3115389_3116205_-	antitermination protein	NA	A0A1B5FPA5	Escherichia_phage	73.8	1.0e-114
AZT55899.1|3116201_3116510_-	hypothetical protein	NA	NA	NA	NA	NA
AZT55900.1|3116520_3117876_-	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	68.8	1.1e-174
AZT55901.1|3117872_3118754_-	AAA family ATPase	NA	Q8W641	Enterobacteria_phage	58.5	2.3e-75
AZT55902.1|3118769_3119678_-	helix-turn-helix domain-containing protein	NA	Q8W642	Enterobacteria_phage	73.5	1.1e-117
AZT55903.1|3119801_3120128_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55904.1|3120252_3120510_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	45.1	1.6e-13
AZT55905.1|3120593_3121043_+	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	32.1	1.1e-09
AZT55906.1|3121185_3121602_+	helix-turn-helix domain-containing protein	NA	Q8W649	Enterobacteria_phage	44.6	1.3e-07
AZT55907.1|3122040_3122226_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55908.1|3122413_3122623_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55909.1|3122585_3122963_+	hypothetical protein	NA	A0A1B5FPB3	Escherichia_phage	54.8	5.0e-27
AZT55910.1|3122962_3123199_+	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	72.6	4.2e-24
AZT55911.1|3123188_3123584_+	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	73.9	4.4e-50
AZT55912.1|3123538_3124444_+	ORF6N domain-containing protein	NA	F1C5A3	Cronobacter_phage	81.4	3.9e-134
AZT55913.1|3124443_3124698_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55914.1|3124694_3125261_+	hypothetical protein	NA	A0A088C4R7	Shewanella_sp._phage	39.0	1.3e-26
AZT55915.1|3125257_3125482_+	hypothetical protein	NA	A0A1B5FPG2	Escherichia_phage	67.6	3.8e-19
AZT55916.1|3125582_3125795_+	hypothetical protein	NA	A0A286S2B6	Klebsiella_phage	74.3	4.2e-23
AZT55917.1|3125791_3126421_+	hypothetical protein	NA	A0A1B5FPC7	Escherichia_phage	89.5	1.7e-104
AZT55918.1|3126420_3126636_+	hypothetical protein	NA	NA	NA	NA	NA
AZT55919.1|3126788_3127028_+	excisionase	NA	S4TND0	Salmonella_phage	65.4	1.1e-24
AZT55920.1|3127053_3128379_+	DUF3596 domain-containing protein	NA	Q20GI2	Phage_258-320	64.0	1.2e-165
AZT55921.1|3128474_3128990_+	lipoprotein	NA	NA	NA	NA	NA
AZT55922.1|3129219_3129948_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.8	5.1e-28
>prophage 8
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	3811322	3877834	4861251	bacteriocin,protease,tRNA	uncultured_Mediterranean_phage(10.0%)	59	NA	NA
AZT56504.1|3811322_3812750_-|protease	serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	4.2e-26
AZT56505.1|3812879_3814397_-	dGTPase	NA	NA	NA	NA	NA
AZT56506.1|3814481_3815180_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AZT56507.1|3815172_3815973_+	vitamin B12 ABC transporter substrate-binding protein BtuF	NA	NA	NA	NA	NA
AZT56508.1|3816009_3816627_+	TRIC cation channel family protein	NA	NA	NA	NA	NA
AZT56509.1|3816749_3817094_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	50.5	1.0e-26
AZT56510.1|3817175_3818597_-	H(+)/Cl(-) exchange transporter ClcA	NA	NA	NA	NA	NA
AZT56511.1|3818766_3820047_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AZT56512.1|3820104_3822087_-	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA	NA
AZT56513.1|3822083_3822974_-	Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	NA	NA	NA	NA	NA
AZT56514.1|3822973_3823771_-	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC	NA	G9BWD6	Planktothrix_phage	28.3	5.4e-15
AZT56515.1|3823818_3826008_-	ferrichrome porin FhuA	NA	NA	NA	NA	NA
AZT56516.1|3826300_3828820_-	bifunctional glycosyl transferase/transpeptidase	NA	NA	NA	NA	NA
AZT56517.1|3828959_3831434_-	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	28.6	3.3e-34
AZT56518.1|3831461_3831992_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
AZT56519.1|3832008_3832713_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
AZT56520.1|3832889_3833345_+	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA	NA
AZT56521.1|3833413_3834310_+|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
AZT56522.1|3834450_3835869_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	37.4	4.2e-26
AZT56523.1|3835865_3836345_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZT56524.1|3836764_3837361_+	fimbrial protein	NA	NA	NA	NA	NA
AZT56525.1|3837500_3838238_+	fimbrial chaperone	NA	NA	NA	NA	NA
AZT56526.1|3838257_3840903_+	outer membrane usher protein	NA	NA	NA	NA	NA
AZT56527.1|3840889_3841456_+	fimbrial protein	NA	NA	NA	NA	NA
AZT56528.1|3841470_3842085_+	fimbrial protein	NA	NA	NA	NA	NA
AZT57567.1|3842097_3842679_+	fimbrial protein	NA	NA	NA	NA	NA
AZT56529.1|3842708_3843923_+	fimbrial-like adhesin	NA	NA	NA	NA	NA
AZT56530.1|3844041_3844836_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
AZT56531.1|3844847_3845702_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZT56532.1|3845796_3846177_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZT56533.1|3846182_3847412_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AZT56534.1|3847473_3847914_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZT56535.1|3848018_3848789_-	ABC transporter permease	NA	NA	NA	NA	NA
AZT56536.1|3848785_3849712_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	32.7	5.9e-21
AZT56537.1|3849820_3850483_+	carbonate dehydratase	NA	NA	NA	NA	NA
AZT56538.1|3850540_3851077_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	33.1	7.8e-18
AZT56539.1|3851282_3853673_+	pyrroloquinoline quinone-dependent dehydrogenase	NA	NA	NA	NA	NA
AZT56540.1|3853750_3855361_-	multicopper oxidase CueO	NA	A0A0C6DWA2	Mamastrovirus	59.8	3.0e-20
AZT56541.1|3855562_3855910_+	hypothetical protein	NA	NA	NA	NA	NA
AZT56542.1|3856016_3856877_+	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
AZT56543.1|3856897_3857692_+	adenosylmethionine decarboxylase	NA	NA	NA	NA	NA
AZT56544.1|3857721_3858489_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	35.3	2.6e-30
AZT56545.1|3858498_3859482_-	D-threonate 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZT56546.1|3859471_3860743_-	D-threonate kinase	NA	NA	NA	NA	NA
AZT56547.1|3860739_3861693_-	2-keto-3-deoxygluconate permease 1	NA	NA	NA	NA	NA
AZT56548.1|3861927_3862290_-	UPF0231 family protein	NA	NA	NA	NA	NA
AZT56549.1|3862477_3865075_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
AZT56550.1|3865467_3867066_+	DUF3300 domain-containing protein	NA	NA	NA	NA	NA
AZT56551.1|3867078_3867870_+	DUF2950 family protein	NA	NA	NA	NA	NA
AZT56552.1|3867907_3868192_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57568.1|3868528_3869953_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.1	1.2e-41
AZT56553.1|3870154_3872044_-	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZT56554.1|3872058_3874722_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZT56555.1|3874881_3875646_-	pyruvate dehydrogenase complex transcriptional repressor PdhR	NA	NA	NA	NA	NA
AZT57569.1|3876097_3876388_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AZT56556.1|3876457_3876748_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AZT57570.1|3876817_3877108_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AZT57571.1|3877177_3877468_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AZT56557.1|3877537_3877834_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 9
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	4428819	4474595	4861251	portal,plate,protease,holin,tail,integrase,capsid,terminase,head,tRNA	Salmonella_phage(69.23%)	61	4427063:4427078	4442607:4442622
4427063:4427078	attL	GCGTCGTCATACCAGG	NA	NA	NA	NA
AZT57054.1|4428819_4430235_-	replicative DNA helicase DnaB	NA	A0A1B0VG30	Salmonella_phage	78.4	7.0e-199
AZT57055.1|4430299_4431283_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AZT57056.1|4431456_4431699_-	envelope stress response protein PspG	NA	NA	NA	NA	NA
AZT57057.1|4431865_4432903_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZT57058.1|4432990_4434088_+|integrase	site-specific integrase	integrase	S5MDN5	Escherichia_phage	89.3	1.9e-191
AZT57059.1|4434228_4434798_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	87.8	3.2e-86
AZT57060.1|4434826_4435816_+|tail	phage tail protein	tail	A0A1S6KZZ0	Salmonella_phage	89.1	5.4e-174
AZT57061.1|4435785_4436403_+|tail	tail fiber assembly protein	tail	A0A1S6KZY8	Salmonella_phage	85.6	3.7e-96
AZT57062.1|4436924_4437458_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	83.7	8.5e-81
AZT57063.1|4437460_4438864_-	hypothetical protein	NA	A0A192Y7M1	Salmonella_phage	59.6	4.1e-135
AZT57064.1|4438850_4439438_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
AZT57065.1|4439440_4440520_-|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	99.7	2.5e-204
AZT57066.1|4440512_4440926_-	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	100.0	3.1e-75
AZT57067.1|4440930_4441464_-|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	98.3	3.5e-95
AZT57068.1|4441463_4442522_-|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	99.7	6.6e-202
AZT57069.1|4442518_4443859_-	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	98.4	2.0e-248
4442607:4442622	attR	GCGTCGTCATACCAGG	NA	NA	NA	NA
AZT57070.1|4443892_4445821_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	98.4	0.0e+00
AZT57071.1|4445905_4446232_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
AZT57072.1|4446228_4446585_-|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
AZT57073.1|4446584_4448081_-|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.4	3.0e-277
AZT57074.1|4448070_4448235_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
AZT57075.1|4448238_4448799_-	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	99.5	3.0e-105
AZT57076.1|4448795_4449308_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
AZT57077.1|4449279_4449684_-|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	98.5	2.7e-71
AZT57078.1|4449680_4450004_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	72.0	3.4e-40
AZT57079.1|4450083_4451313_-|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	90.9	7.9e-207
AZT57080.1|4451322_4451925_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	91.0	3.5e-99
AZT57595.1|4451917_4453012_-|portal	phage portal protein	portal	A0A1W6JP33	Morganella_phage	82.4	1.8e-178
AZT57081.1|4453283_4455014_-|terminase	terminase large subunit	terminase	Q8W631	Enterobacteria_phage	58.9	6.5e-199
AZT57082.1|4455013_4455451_-|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	62.8	3.5e-32
AZT57083.1|4455602_4455953_-	HNH endonuclease	NA	Q8HA82	Salmonella_phage	94.0	9.8e-62
AZT57084.1|4456013_4456316_-	hypothetical protein	NA	Q8HA83	Salmonella_phage	97.0	5.1e-51
AZT57085.1|4456400_4456904_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57086.1|4457235_4457499_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57087.1|4457568_4458102_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	46.6	1.1e-06
AZT57088.1|4458098_4458713_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	89.7	4.8e-104
AZT57089.1|4458712_4458994_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	88.2	2.5e-39
AZT57090.1|4458980_4459376_-	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	81.7	2.6e-50
AZT57091.1|4459464_4459800_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57092.1|4459928_4460507_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	56.1	7.8e-48
AZT57093.1|4460521_4461511_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.9	2.2e-191
AZT57596.1|4461518_4462379_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.0	7.8e-161
AZT57094.1|4462395_4462785_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	87.6	3.2e-61
AZT57095.1|4462781_4463102_-	LexA family transcriptional regulator	NA	S5FXP5	Shigella_phage	56.6	1.7e-23
AZT57096.1|4463098_4464829_-	DNA cytosine methyltransferase	NA	H9C171	Pectobacterium_phage	58.4	7.9e-221
AZT57097.1|4464821_4465700_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	87.4	1.3e-147
AZT57098.1|4465699_4466182_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	98.1	6.0e-86
AZT57099.1|4466183_4467128_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	85.7	1.7e-129
AZT57100.1|4467124_4467349_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
AZT57101.1|4467345_4468488_-	peptidase	NA	A0A1C9IHV9	Salmonella_phage	97.4	1.6e-206
AZT57102.1|4468484_4469039_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	99.5	1.2e-101
AZT57103.1|4469067_4469292_-	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
AZT57104.1|4469230_4469416_-	amino acid permease	NA	NA	NA	NA	NA
AZT57105.1|4469389_4470085_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	2.7e-127
AZT57106.1|4470615_4470801_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57107.1|4470898_4471270_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
AZT57108.1|4471327_4472155_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	98.9	1.1e-151
AZT57109.1|4472291_4472831_+	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	98.9	2.5e-96
AZT57110.1|4473278_4473551_+	pyocin activator protein PrtN	NA	S5MQM5	Escherichia_phage	89.8	6.9e-39
AZT57111.1|4473585_4474047_-	hypothetical protein	NA	NA	NA	NA	NA
AZT57112.1|4474052_4474595_-	DUF4065 domain-containing protein	NA	A0A139ZPG5	Marinitoga_camini_virus	26.8	5.3e-06
>prophage 10
CP034697	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE42 chromosome, complete genome	4861251	4502288	4516716	4861251	tail,plate	Burkholderia_phage(50.0%)	19	NA	NA
AZT57135.1|4502288_4502636_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
AZT57136.1|4503211_4503499_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	2.3e-16
AZT57137.1|4503501_4504107_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.8	7.4e-57
AZT57138.1|4504119_4504434_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	4.9e-20
AZT57139.1|4504593_4505049_+	hypothetical protein	NA	NA	NA	NA	NA
AZT57140.1|4505045_4505243_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	1.1e-06
AZT57141.1|4505232_4506648_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	69.5	2.9e-184
AZT57142.1|4506647_4507172_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	68.4	1.2e-66
AZT57143.1|4507223_4507541_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AZT57144.1|4507500_4507629_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AZT57145.1|4507722_4510008_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	29.4	1.2e-67
AZT57146.1|4510007_4510961_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	53.1	4.2e-38
AZT57147.1|4510960_4511170_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AZT57148.1|4511157_4512198_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	3.9e-74
AZT57149.1|4512207_4512930_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	43.0	1.7e-12
AZT57150.1|4513027_4513387_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	1.8e-34
AZT57151.1|4513377_4514493_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.4	2.2e-99
AZT57152.1|4514485_4515118_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	54.9	2.1e-22
AZT57153.1|4515120_4516716_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.5	8.5e-52
