assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003994635.1_ASM399463v1	CP034717	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE09 chromosome, complete genome	2	997537-998725	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACC,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG	28,29,29	1	1	998665-998696	CP034717.1_831759-831728	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|57aa|down_2|CP034717.1_1000000_1000171_+	NA|447aa|up_9|CP034717.1_981930_983271_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|CP034717.1_983291_984632_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|CP034717.1_984709_985852_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|CP034717.1_985924_988681_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|CP034717.1_988738_990034_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|CP034717.1_990085_992320_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|CP034717.1_992394_993186_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP034717.1_993413_995051_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP034717.1_995133_996432_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP034717.1_996568_997240_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP034717.1_998822_999620_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP034717.1_999709_1000072_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP034717.1_1000000_1000171_+	NA	NA|600aa|down_3|CP034717.1_1000499_1002299_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP034717.1_1002298_1004011_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP034717.1_1004026_1004761_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP034717.1_1004848_1005802_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|898aa|down_7|CP034717.1_1006186_1008880_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|down_8|CP034717.1_1009047_1009347_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_9|CP034717.1_1009356_1009698_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003994635.1_ASM399463v1	CP034717	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE09 chromosome, complete genome	3	1016028-1018130	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	34,34	34	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	cas3|898aa|up_9|CP034717.1_1006186_1008880_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|CP034717.1_1009047_1009347_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|CP034717.1_1009356_1009698_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|CP034717.1_1010055_1011591_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP034717.1_1011607_1012210_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP034717.1_1012226_1013291_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP034717.1_1013300_1014026_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP034717.1_1014025_1014730_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP034717.1_1014729_1015647_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034717.1_1015649_1015943_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034717.1_1018144_1019191_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034717.1_1019442_1020351_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034717.1_1020360_1021800_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP034717.1_1021786_1022392_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP034717.1_1022409_1022766_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP034717.1_1022956_1023268_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP034717.1_1023286_1023997_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP034717.1_1023996_1024476_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP034717.1_1024472_1025522_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP034717.1_1025502_1026264_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003994635.1_ASM399463v1	CP034717	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE09 chromosome, complete genome	4	2178511-2180430	2,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACC,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	30,31,31	31	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|62aa|up_5|CP034717.1_2169386_2169572_+,NA|91aa|down_9|CP034717.1_2192026_2192299_-	NA|118aa|up_9|CP034717.1_2164926_2165280_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|461aa|up_8|CP034717.1_2165498_2166881_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_7|CP034717.1_2166881_2167532_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_6|CP034717.1_2167524_2169321_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|62aa|up_5|CP034717.1_2169386_2169572_+	NA	NA|466aa|up_4|CP034717.1_2169659_2171057_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|CP034717.1_2171442_2175186_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|CP034717.1_2175182_2176718_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|CP034717.1_2176714_2177425_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|CP034717.1_2177424_2178102_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|CP034717.1_2181170_2182013_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|CP034717.1_2182063_2182522_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|302aa|down_2|CP034717.1_2182632_2183538_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|CP034717.1_2183628_2184642_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_4|CP034717.1_2184844_2185753_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_5|CP034717.1_2185886_2186300_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|CP034717.1_2186962_2187580_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|CP034717.1_2187775_2190454_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|CP034717.1_2190930_2191578_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|91aa|down_9|CP034717.1_2192026_2192299_-	NA
