assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003994555.1_ASM399455v1	CP034702	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE36 chromosome, complete genome	2	1001122-1002313	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACC,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG	28,29,29	1	1	1002253-1002284	CP034702.1_835469-835438	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|57aa|down_2|CP034702.1_1003588_1003759_+	NA|453aa|up_9|CP034702.1_984159_985518_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|447aa|up_8|CP034702.1_985514_986855_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_7|CP034702.1_986875_988216_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_6|CP034702.1_988293_989436_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_5|CP034702.1_989508_992265_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_4|CP034702.1_992322_993618_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_3|CP034702.1_993669_995904_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|546aa|up_2|CP034702.1_996998_998636_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP034702.1_998718_1000017_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP034702.1_1000153_1000825_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP034702.1_1002410_1003208_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP034702.1_1003297_1003660_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP034702.1_1003588_1003759_+	NA	NA|600aa|down_3|CP034702.1_1004087_1005887_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP034702.1_1005886_1007599_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP034702.1_1007614_1008349_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP034702.1_1008436_1009390_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|898aa|down_7|CP034702.1_1009775_1012469_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|down_8|CP034702.1_1012636_1012936_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_9|CP034702.1_1012945_1013287_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003994555.1_ASM399455v1	CP034702	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE36 chromosome, complete genome	3	1019617-1021288	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	27,29,29	0	0	NA	NA	I-E:I-E:I-E	27,27,27	27	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	cas3|898aa|up_9|CP034702.1_1009775_1012469_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|CP034702.1_1012636_1012936_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|CP034702.1_1012945_1013287_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|CP034702.1_1013644_1015180_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP034702.1_1015196_1015799_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP034702.1_1015815_1016880_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP034702.1_1016889_1017615_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP034702.1_1017614_1018319_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP034702.1_1018318_1019236_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034702.1_1019238_1019532_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034702.1_1021302_1022349_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034702.1_1022600_1023509_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034702.1_1023518_1024958_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP034702.1_1024944_1025550_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|104aa|down_4|CP034702.1_1026115_1026427_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|CP034702.1_1026445_1027156_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|CP034702.1_1027155_1027635_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|CP034702.1_1027631_1028681_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|CP034702.1_1028661_1029423_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|CP034702.1_1029416_1030043_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCA_003994555.1_ASM399455v1	CP034702	Salmonella enterica subsp. salamae serovar 42:r:- strain RSE36 chromosome, complete genome	4	2176554-2178563	4,3,5,6,7,8	CRISPRCasFinder,CRT,CRISPRCasFinder,CRISPRCasFinder,CRISPRCasFinder,CRISPRCasFinder	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTNCCCGCGAGAGCGGGGANAAN,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	29,26,29,29,29,29	0	0	NA	NA	I-E:NA:I-E:I-E:I-E:I-E	24,33,24,24,24,24	33	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|62aa|up_5|CP034702.1_2167430_2167616_+,NA|91aa|down_7|CP034702.1_2190333_2190606_-	NA|118aa|up_9|CP034702.1_2162970_2163324_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|461aa|up_8|CP034702.1_2163542_2164925_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_7|CP034702.1_2164925_2165576_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_6|CP034702.1_2165568_2167365_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|62aa|up_5|CP034702.1_2167430_2167616_+	NA	NA|466aa|up_4|CP034702.1_2167703_2169101_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|CP034702.1_2169486_2173230_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|CP034702.1_2173226_2174762_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|CP034702.1_2174758_2175469_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|CP034702.1_2175468_2176146_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|CP034702.1_2179475_2180318_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|302aa|down_1|CP034702.1_2180938_2181844_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_2|CP034702.1_2181934_2182948_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_3|CP034702.1_2183150_2184059_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_4|CP034702.1_2184193_2184607_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_5|CP034702.1_2185269_2185887_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|216aa|down_6|CP034702.1_2189237_2189885_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|91aa|down_7|CP034702.1_2190333_2190606_-	NA	NA|544aa|down_8|CP034702.1_2190649_2192281_+	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional	NA|307aa|down_9|CP034702.1_2192403_2193324_+	PRK09471, oppB, oligopeptide ABC transporter permease OppB
