The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	0	59497	4110595	tRNA,integrase	Natrialba_phage(12.5%)	53	6595:6609	62169:62183
AZR98822.1|0_1920_+|tRNA	tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZR98823.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AZR98824.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZR98825.1|3409_4171_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
AZR98826.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZR98827.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AZR98828.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
6595:6609	attL	ATGTGGCTCAGTGGT	NA	NA	NA	NA
AZR98829.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZR98830.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZR98831.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZR98832.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZR98833.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZR98834.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZR98835.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZR98836.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZR98837.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZS02217.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98838.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98839.1|21943_22894_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR98840.1|25401_26508_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZS02218.1|27624_28335_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98841.1|28331_29234_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR98842.1|29363_29663_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98843.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98844.1|30190_31408_-	thiolase	NA	NA	NA	NA	NA
AZR98845.1|31413_31911_-	dehydratase	NA	NA	NA	NA	NA
AZR98846.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02219.1|33263_34055_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZR98847.1|34097_35519_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AZR98848.1|35722_36625_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR98849.1|36621_37812_-	transporter	NA	NA	NA	NA	NA
AZR98850.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZR98851.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZR98852.1|41109_41649_+	D,D-heptose 1,7-bisphosphate phosphatase	NA	NA	NA	NA	NA
AZR98853.1|41652_42381_+	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZR98854.1|42367_43261_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98855.1|43331_43727_+	glyoxalase I	NA	NA	NA	NA	NA
AZR98856.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZR98857.1|44395_44575_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98858.1|44712_45663_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02220.1|46273_46798_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98859.1|46769_47006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZR98860.1|47133_48027_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98861.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZR98862.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZR98863.1|51238_52141_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR98864.1|52183_53440_+	AmpG family muropeptide MFS transporter	NA	NA	NA	NA	NA
AZR98865.1|54671_55406_-	glutamate racemase	NA	NA	NA	NA	NA
AZR98866.1|55411_56002_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZR98867.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZR98868.1|56712_57474_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AZR98869.1|57553_58453_-	ABC transporter	NA	NA	NA	NA	NA
AZR98870.1|58546_59497_-|integrase	integrase	integrase	NA	NA	NA	NA
62169:62183	attR	ATGTGGCTCAGTGGT	NA	NA	NA	NA
>prophage 2
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	70182	123122	4110595	tRNA,integrase,transposase	Planktothrix_phage(20.0%)	53	77908:77923	123514:123529
AZR98880.1|70182_71085_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR98881.1|71178_71493_+|transposase	transposase	transposase	NA	NA	NA	NA
AZR98882.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZR98883.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZR98884.1|75406_75988_-	N-acetyl-anhydromuranmyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZR98885.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98886.1|76329_77172_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98887.1|77277_78687_+	signal recognition particle	NA	NA	NA	NA	NA
77908:77923	attL	GACGAGGCCATGATGC	NA	NA	NA	NA
AZR98888.1|78683_79634_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02222.1|79708_80653_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR98889.1|80649_82524_-	capsular biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZR98890.1|83871_84576_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AZR98891.1|84572_85679_-	glycosyl transferase	NA	NA	NA	NA	NA
AZR98892.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
AZR98893.1|86530_87718_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZR98894.1|87780_89040_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZR98895.1|89063_90152_-	UDP-N-acetyl glucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZR98896.1|90159_91260_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZR98897.1|91263_91839_-	serine acetyltransferase	NA	NA	NA	NA	NA
AZR98898.1|91842_92895_-	oxidoreductase	NA	NA	NA	NA	NA
AZS02223.1|93025_94033_+	heptosyltransferase	NA	NA	NA	NA	NA
AZR98899.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZR98900.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98901.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZR98902.1|96317_97184_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZR98903.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZR98904.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZR98905.1|99381_99849_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98906.1|99938_100160_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98907.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98908.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZS02224.1|101656_102835_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AZR98909.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZR98910.1|103857_104133_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98911.1|104140_104803_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AZR98912.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AZR98913.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZR98914.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZR98915.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZR98916.1|108476_109379_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR98917.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZR98918.1|111601_112231_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AZR98919.1|112292_112976_-	cell division protein	NA	NA	NA	NA	NA
AZR98920.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZS02225.1|114955_115303_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98921.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98922.1|115993_117010_+|transposase	transposase	transposase	NA	NA	NA	NA
AZR98923.1|117085_117886_-	ABC transporter permease	NA	NA	NA	NA	NA
AZR98924.1|117882_118758_-	ABC transporter permease	NA	NA	NA	NA	NA
AZR98925.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR98926.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZR98927.1|121249_122071_-	metallophosphatase	NA	NA	NA	NA	NA
AZR98928.1|122171_123122_-|integrase	integrase	integrase	NA	NA	NA	NA
123514:123529	attR	GCATCATGGCCTCGTC	NA	NA	NA	NA
>prophage 3
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	165944	302554	4110595	tRNA,integrase	Klosneuvirus(10.53%)	118	174244:174262	306632:306649
AZR98965.1|165944_166895_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR98966.1|168338_169241_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98967.1|169218_169848_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98968.1|170130_171561_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AZR98969.1|171594_172224_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZR98970.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZR98971.1|173916_174588_+	hypothetical protein	NA	NA	NA	NA	NA
174244:174262	attL	GCGCGCGAGATCGCCGCCA	NA	NA	NA	NA
AZS02227.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
174244:174262	attL	GCGCGCGAGATCGCCGCCA	NA	NA	NA	NA
AZR98972.1|175400_176303_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR98973.1|177418_177946_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98974.1|178037_178853_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98975.1|178913_179648_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98976.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZR98977.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
AZR98978.1|182387_183473_+	ATP-binding protein	NA	NA	NA	NA	NA
AZR98979.1|183476_185381_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98980.1|185377_189052_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98981.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZR98982.1|189683_190106_-	glyoxalase	NA	NA	NA	NA	NA
AZR98983.1|190133_190553_-	glyoxalase	NA	NA	NA	NA	NA
AZR98984.1|190581_190929_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02228.1|191202_191652_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98985.1|191806_194077_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZR98986.1|194152_195358_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98987.1|195504_196407_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR98988.1|196509_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AZR98989.1|197141_198035_+	divalent cation transporter	NA	NA	NA	NA	NA
AZR98990.1|198429_199530_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AZR98991.1|199611_199986_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZR98992.1|200045_202910_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZR98993.1|203054_203795_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZR98994.1|203864_205076_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AZR98995.1|205104_206073_+	hypothetical protein	NA	NA	NA	NA	NA
AZR98996.1|206734_207637_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR98997.1|207793_208117_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZS02229.1|208221_209262_-	cyclase	NA	NA	NA	NA	NA
AZR98998.1|209267_210047_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZR98999.1|210092_210389_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99000.1|210414_210690_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZR99001.1|210746_211391_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZR99002.1|211390_212077_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZS02230.1|212275_213058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99003.1|213108_213834_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZR99004.1|213865_215215_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZR99005.1|215326_216259_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZR99006.1|216716_219512_-	peptidase S8	NA	NA	NA	NA	NA
AZR99007.1|220105_222949_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZR99008.1|223119_223839_+	7-cyano-7-deazaguanine synthase	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZR99009.1|223877_224426_-	GCN5 family acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZR99010.1|224580_225480_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZR99011.1|225504_226455_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99012.1|226673_227369_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99013.1|227385_228798_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AZR99014.1|228910_230341_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZR99015.1|230382_232296_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AZR99016.1|232614_233181_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZR99017.1|233271_234273_+	restriction endonuclease	NA	NA	NA	NA	NA
AZR99018.1|234387_235338_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99019.1|235424_236375_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99020.1|236371_237322_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99021.1|237420_238218_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZR99022.1|239167_239578_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZR99023.1|239827_240583_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AZR99024.1|240599_241343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99025.1|241386_242430_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99026.1|242600_244703_+	hypothetical protein	NA	NA	NA	NA	NA
242713:242731	attR	TGGCGGCGATCTCGCGCGC	NA	NA	NA	NA
AZR99027.1|246113_247070_+	hypothetical protein	NA	NA	NA	NA	NA
242713:242731	attR	TGGCGGCGATCTCGCGCGC	NA	NA	NA	NA
AZR99028.1|247088_247580_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	NA	NA	NA	NA
AZR99029.1|247576_248932_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZR99030.1|248932_249631_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99031.1|249627_250329_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZR99032.1|250581_251631_+	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZR99033.1|251736_252678_-|tRNA	tRNA dimethylallyltransferase	tRNA	NA	NA	NA	NA
AZR99034.1|252674_254564_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZS02231.1|254668_255289_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99035.1|255431_256817_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AZR99036.1|256747_257284_-|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein TsaE	tRNA	NA	NA	NA	NA
AZR99037.1|257435_258827_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZR99038.1|258843_259824_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99039.1|259959_260943_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99040.1|261007_261907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99041.1|262013_263768_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZR99042.1|263775_264900_-	carnitine dehydratase	NA	NA	NA	NA	NA
AZR99043.1|264913_265894_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99044.1|266672_267575_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99045.1|267589_267961_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99046.1|268134_268680_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99047.1|268805_270383_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AZR99048.1|270398_271553_+	cytochrome d ubiquinol oxidase subunit 2	NA	NA	NA	NA	NA
AZR99049.1|271566_271692_+	cytochrome bd biosynthesis protein	NA	NA	NA	NA	NA
AZR99050.1|271688_273440_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZR99051.1|273436_275116_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZR99052.1|275178_275727_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AZR99053.1|276869_277148_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99054.1|278191_279142_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99055.1|279419_279581_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99056.1|279588_279729_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99057.1|280247_280697_-	stringent starvation protein B	NA	NA	NA	NA	NA
AZR99058.1|280706_281318_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZR99059.1|281476_282325_-	cytochrome C	NA	NA	NA	NA	NA
AZR99060.1|282350_283733_-	cytochrome B	NA	NA	NA	NA	NA
AZR99061.1|283797_284439_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZR99062.1|284578_285037_+	large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
AZR99063.1|285061_285838_-	metal-binding protein	NA	NA	NA	NA	NA
AZS02232.1|285891_287028_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZR99064.1|287024_287975_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99065.1|288073_288700_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99066.1|288722_289649_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZR99067.1|289657_291244_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99068.1|291240_292245_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZR99069.1|292444_293305_+	cupin	NA	NA	NA	NA	NA
AZR99070.1|293336_294338_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99071.1|294408_295218_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZR99072.1|295295_297155_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZR99073.1|297283_298486_-	arabinose transporter permease	NA	NA	NA	NA	NA
AZR99074.1|298599_299481_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99075.1|300983_301544_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZR99076.1|301603_302554_-|integrase	integrase	integrase	NA	NA	NA	NA
306632:306649	attR	CGCGCGCCGCGCCGGCGG	NA	NA	NA	NA
>prophage 4
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	391908	449417	4110595	integrase	Orpheovirus(14.29%)	50	402107:402166	449460:449561
AZR99164.1|391908_392859_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99165.1|392995_393913_+	reductase	NA	NA	NA	NA	NA
AZR99166.1|393909_394158_+	NrdH-redoxin	NA	NA	NA	NA	NA
AZR99167.1|394154_395360_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZR99168.1|395432_396428_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99169.1|396450_397671_-	dehydratase	NA	NA	NA	NA	NA
AZR99170.1|397667_398312_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99171.1|398308_398701_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99172.1|398589_399942_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99173.1|400042_400852_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02237.1|401156_402110_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
402107:402166	attL	CTAGCTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACT	NA	NA	NA	NA
AZR99174.1|402208_403192_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99175.1|403868_404639_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZR99176.1|404635_405814_-	carnitine dehydratase	NA	NA	NA	NA	NA
AZR99177.1|405981_407688_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZR99178.1|407684_408581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99179.1|408621_410211_-	sulfurtransferase	NA	NA	NA	NA	NA
AZR99180.1|410260_411253_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99181.1|411321_411921_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99182.1|412381_413362_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99183.1|413437_414340_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99184.1|414476_415391_+	transporter	NA	NA	NA	NA	NA
AZR99185.1|415387_416047_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99186.1|416136_417060_+	peptidase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZR99187.1|417065_417521_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99188.1|417517_418621_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99189.1|418808_420428_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AZR99190.1|420424_421483_-	glycosyl transferase family 2	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZR99191.1|421612_422107_+	acetyltransferase	NA	NA	NA	NA	NA
AZR99192.1|422199_423177_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99193.1|423372_424578_+	ABC transporter permease	NA	NA	NA	NA	NA
AZR99194.1|424574_426086_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02238.1|426101_427415_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZR99195.1|427605_427785_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99196.1|428194_428929_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZR99197.1|431421_432324_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99198.1|432455_432854_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZR99199.1|433264_433735_-	universal stress protein	NA	NA	NA	NA	NA
AZR99200.1|433823_434168_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99201.1|434267_435668_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99202.1|437456_437975_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZR99203.1|438085_438841_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZR99204.1|439036_440269_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZR99205.1|440261_441047_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZR99206.1|441113_442085_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99207.1|442095_443073_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99208.1|443198_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZR99209.1|444397_445426_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZR99210.1|445491_446685_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZR99211.1|448466_449417_-|integrase	integrase	integrase	NA	NA	NA	NA
449460:449561	attR	AGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGCCGGGCGCGGCGATGGGGTCTTGCCGGGCCCCGCAGATCTCG	NA	NA	NA	NA
>prophage 5
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	620804	721267	4110595	tRNA,terminase,integrase,tail	uncultured_Caudovirales_phage(14.29%)	110	665795:665809	724082:724100
AZR99364.1|620804_621755_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99365.1|622453_622837_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99366.1|622894_623497_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02245.1|623514_623916_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99367.1|624031_624943_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99368.1|624939_625521_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZS02246.1|626324_627050_+|tRNA	arginyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
AZR99369.1|627090_628140_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AZR99370.1|628287_628866_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZR99371.1|629252_630230_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99372.1|630323_634718_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZR99373.1|634918_635767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99374.1|635925_636738_-	damage-inducible protein	NA	NA	NA	NA	NA
AZR99375.1|636792_637743_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99376.1|637841_638642_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99377.1|638703_639087_+	thiol-disulfide isomerase	NA	NA	NA	NA	NA
AZR99378.1|639098_640532_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZR99379.1|640738_641068_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99380.1|641070_641820_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99381.1|642002_642923_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AZR99382.1|642969_643182_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99383.1|643204_643627_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZR99384.1|643643_644744_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZR99385.1|644840_646358_-	peptidase	NA	NA	NA	NA	NA
AZR99386.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZS02247.1|647294_648167_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99387.1|648257_649352_-	porin	NA	NA	NA	NA	NA
AZR99388.1|649645_650548_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02248.1|650670_651612_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99389.1|651695_652055_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99390.1|652436_653474_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99391.1|653790_655131_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AZR99392.1|655140_655593_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99393.1|655698_656871_+	monooxygenase	NA	NA	NA	NA	NA
AZR99394.1|656936_657962_+|tRNA	tRNA-dihydrouridine synthase B	tRNA	NA	NA	NA	NA
AZR99395.1|658002_658242_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZR99396.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZR99397.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZR99398.1|660529_661102_+	Holliday junction ATP-dependent DNA helicase RuvA	NA	NA	NA	NA	NA
AZR99399.1|661120_662032_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AZR99400.1|662105_663074_-	serine dehydratase	NA	NA	NA	NA	NA
AZR99401.1|663196_664270_+	ATP-dependent DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZR99402.1|664274_666095_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
665795:665809	attL	CGACCTCGCGCGCCA	NA	NA	NA	NA
AZR99403.1|666171_667074_-|integrase	integrase	integrase	NA	NA	NA	NA
665795:665809	attL	CGACCTCGCGCGCCA	NA	NA	NA	NA
AZR99404.1|667210_667546_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99405.1|667679_668330_+	carbonate dehydratase	NA	NA	NA	NA	NA
AZR99406.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
AZR99407.1|669839_670595_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02249.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZR99408.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZR99409.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZR99410.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZR99411.1|673908_675651_+	sulfite reductase	NA	NA	NA	NA	NA
AZR99412.1|675643_676168_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99413.1|676207_677002_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99414.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99415.1|678341_679292_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99416.1|679543_679750_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02250.1|679821_680433_-	repressor	NA	NA	NA	NA	NA
AZR99417.1|680912_681233_-	hypothetical protein	NA	NA	NA	NA	NA
681040:681054	attR	TGGCGCGCGAGGTCG	NA	NA	NA	NA
AZR99418.1|681225_681924_-	hypothetical protein	NA	NA	NA	NA	NA
681040:681054	attR	TGGCGCGCGAGGTCG	NA	NA	NA	NA
AZR99419.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99420.1|682177_683128_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99421.1|683767_684253_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AZR99422.1|684239_685517_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZR99423.1|685519_686938_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZR99424.1|686909_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AZR99425.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZR99426.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZR99427.1|689423_690374_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99428.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99429.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZR99430.1|691846_692047_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99431.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZR99432.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZR99433.1|692833_693256_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99434.1|693263_693764_+	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZR99435.1|694018_694537_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZR99436.1|694546_694876_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZR99437.1|694893_695184_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZR99438.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZR99439.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99440.1|698258_698792_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZR99441.1|698788_699178_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZR99442.1|699170_703127_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZR99443.1|703131_703548_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99444.1|703766_704030_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZR99445.1|704029_704842_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99446.1|704846_705089_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99447.1|705067_705619_+	lysozyme	NA	NA	NA	NA	NA
AZR99448.1|705618_706134_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99449.1|706130_706412_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99450.1|706411_706633_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99451.1|706961_707633_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZR99452.1|707560_707929_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99453.1|707988_708675_-	two-component system response regulator	NA	NA	NA	NA	NA
AZR99454.1|708655_709228_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZR99455.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZR99456.1|711076_711505_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZR99457.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
AZR99458.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
AZR99459.1|712682_713657_+	protein TolA	NA	NA	NA	NA	NA
AZR99460.1|713673_714990_+	translocation protein TolB	NA	NA	NA	NA	NA
AZR99461.1|715021_715519_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AZR99462.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZR99463.1|716294_717344_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AZR99464.1|717340_718135_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZR99465.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99466.1|718629_719187_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99467.1|720316_721267_+|integrase	integrase	integrase	NA	NA	NA	NA
724082:724100	attR	GGCCGCCGCGATCGCCGCG	NA	NA	NA	NA
>prophage 6
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	748192	821354	4110595	integrase	Streptococcus_phage(16.67%)	59	752249:752308	821398:821500
AZR99488.1|748192_749143_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99489.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZR99490.1|750928_752194_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
752249:752308	attL	GCTAGGTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAAC	NA	NA	NA	NA
AZR99491.1|752399_753302_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99492.1|753343_753499_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99493.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZS02252.1|754151_756596_-	ligand-gated channel	NA	NA	NA	NA	NA
AZR99494.1|756715_757687_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99495.1|757818_758343_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZR99496.1|758302_759253_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99497.1|759474_761670_-	DNA methylase	NA	NA	NA	NA	NA
AZS02253.1|761742_762090_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZR99498.1|762272_763223_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99499.1|763338_763782_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZR99500.1|763844_764639_+	transcriptional regulator	NA	NA	NA	NA	NA
AZR99501.1|764804_765941_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZR99502.1|766011_767145_-	GTPase ObgE	NA	NA	NA	NA	NA
AZR99503.1|767294_767555_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZR99504.1|767588_767900_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZR99505.1|768324_769473_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZR99506.1|769587_770553_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZR99507.1|770821_771688_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99508.1|771818_773867_+	hydantoinase	NA	NA	NA	NA	NA
AZR99509.1|773884_775882_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZR99510.1|775916_777254_+	amino acid deaminase	NA	NA	NA	NA	NA
AZR99511.1|779424_780906_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZR99512.1|780921_781479_-	lysine acyltransferase	NA	NA	NA	NA	NA
AZS02254.1|781591_781771_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99513.1|781855_787078_+	hemolysin	NA	NA	NA	NA	NA
AZR99514.1|787155_789294_+	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZR99515.1|789290_790613_+	hemolysin D	NA	NA	NA	NA	NA
AZR99516.1|790614_792039_+	CyaE	NA	NA	NA	NA	NA
AZR99517.1|792129_793038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99518.1|793102_794017_+	ABC transporter	NA	NA	NA	NA	NA
AZR99519.1|794423_794657_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99520.1|794854_795538_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZR99521.1|795569_796298_+	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AZR99522.1|796327_797188_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZR99523.1|797195_797762_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99524.1|797850_798807_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99525.1|798851_799604_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZR99526.1|799600_801346_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZR99527.1|801430_802165_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99528.1|802481_803504_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS02255.1|803519_804155_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99529.1|804386_805394_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZR99530.1|805434_806967_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZR99531.1|806963_808082_-	deacylase	NA	NA	NA	NA	NA
AZR99532.1|808078_808861_-	ABC transporter permease	NA	NA	NA	NA	NA
AZR99533.1|808872_809736_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZS02256.1|809754_810852_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99534.1|810920_811847_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99535.1|811881_813576_-	acetolactate synthase	NA	NA	NA	NA	NA
AZR99536.1|813775_814669_-	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AZR99537.1|814816_815767_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99538.1|815865_816522_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99539.1|816669_819378_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZR99540.1|819387_820407_+	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZR99541.1|820403_821354_-|integrase	integrase	integrase	NA	NA	NA	NA
821398:821500	attR	GTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACACCTAGCCGGCGCGCGCCAGCAGCACCACCACGTTGGCGGCAATCCCTTC	NA	NA	NA	NA
>prophage 7
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	859797	913928	4110595	holin,integrase,transposase	Vibrio_phage(25.0%)	44	868088:868107	917203:917222
AZR99574.1|859797_861756_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZR99575.1|861838_862789_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99576.1|863009_863678_+	transcriptional regulator	NA	NA	NA	NA	NA
AZR99577.1|863801_864908_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZR99578.1|864920_868034_+	acriflavine resistance protein B	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZR99579.1|868030_869524_+	RND transporter	NA	NA	NA	NA	NA
868088:868107	attL	CTGGCGCTGGCCGGCTGCGC	NA	NA	NA	NA
AZR99580.1|869538_870210_+	transcriptional regulator	NA	NA	NA	NA	NA
AZS02260.1|870253_870706_-	azurin	NA	NA	NA	NA	NA
AZR99581.1|870888_871536_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02261.1|871639_873688_+	hydantoinase	NA	NA	NA	NA	NA
AZR99582.1|873684_875697_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZR99583.1|875722_877057_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02262.1|877165_878158_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99584.1|878224_880309_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99585.1|880333_881305_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99586.1|881433_882465_-	peptidase M14	NA	NA	NA	NA	NA
AZR99587.1|882468_883620_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZR99588.1|883823_884714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99589.1|884791_885616_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZR99590.1|885812_886829_-|transposase	transposase	transposase	NA	NA	NA	NA
AZR99591.1|887025_888009_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZR99592.1|888067_889195_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AZR99593.1|889185_889560_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99594.1|889607_890996_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99595.1|891026_892016_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99596.1|892126_893359_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZR99597.1|893640_894441_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99598.1|894463_896695_-|holin	choline transporter	holin	NA	NA	NA	NA
AZR99599.1|897482_897929_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZR99600.1|897950_898697_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZR99601.1|898840_899818_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZR99602.1|900451_901063_+	hypothetical protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZR99603.1|901056_902274_-	threonine dehydratase	NA	NA	NA	NA	NA
AZR99604.1|902414_903365_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99605.1|903361_904081_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99606.1|904201_906361_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZR99607.1|906451_906721_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZS02263.1|907014_907542_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99608.1|907560_908340_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZR99609.1|908507_909524_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZR99610.1|909596_910088_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZR99611.1|910098_911814_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZR99612.1|912284_912896_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99613.1|912977_913928_+|integrase	integrase	integrase	NA	NA	NA	NA
917203:917222	attR	CTGGCGCTGGCCGGCTGCGC	NA	NA	NA	NA
>prophage 8
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	938427	1000576	4110595	integrase,transposase	Bacillus_virus(15.38%)	57	930184:930202	1003953:1003971
930184:930202	attL	CGCCCGCCTGCTGGGCGTG	NA	NA	NA	NA
AZR99634.1|938427_939330_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99635.1|939326_939710_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AZR99636.1|939764_941579_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZS02265.1|941728_942556_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZR99637.1|942601_943582_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZR99638.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99639.1|943787_944969_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99640.1|945132_945867_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZR99641.1|945868_948481_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZR99642.1|948616_950530_-	peptidase	NA	NA	NA	NA	NA
AZR99643.1|951145_951556_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AZR99644.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZR99645.1|952837_953788_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99646.1|953784_954759_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99647.1|954883_955795_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZS02266.1|956071_956464_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZR99648.1|956593_957544_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99649.1|957573_957756_-	hypothetical protein	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZR99650.1|958528_959710_-	MFS transporter	NA	NA	NA	NA	NA
AZR99651.1|959925_960603_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZR99652.1|960599_961325_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AZR99653.1|961450_962032_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99654.1|962402_965084_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZS02267.1|965086_966217_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AZR99655.1|966209_967295_+	chorismate mutase	NA	NA	NA	NA	NA
AZR99656.1|967381_968281_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AZR99657.1|968277_969606_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZR99658.1|969620_970292_+	cytidylate kinase	NA	NA	NA	NA	NA
AZR99659.1|970479_972195_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZR99660.1|972196_972556_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZR99661.1|972747_973062_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99662.1|973104_974325_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99663.1|974321_975263_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZR99664.1|975259_976249_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZS02268.1|976538_976868_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99665.1|976966_977917_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99666.1|977997_978909_+	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZR99667.1|978969_980115_-	murein transglycosylase	NA	NA	NA	NA	NA
AZR99668.1|980134_981049_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZR99669.1|981120_981870_+	electron transporter RnfB	NA	NA	NA	NA	NA
AZR99670.1|981869_982799_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
AZR99671.1|983042_984869_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZR99672.1|984951_985593_+	peroxidase	NA	NA	NA	NA	NA
AZR99673.1|985782_986817_+	sulfate transporter subunit	NA	NA	NA	NA	NA
AZR99674.1|986832_987036_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99675.1|987057_987732_+	sulfate ABC transporter permease	NA	NA	NA	NA	NA
AZR99676.1|987846_988629_+	sulfate ABC transporter permease	NA	NA	NA	NA	NA
AZR99677.1|988653_989718_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZS02269.1|990515_991424_+	sulfate adenylyltransferase	NA	NA	NA	NA	NA
AZR99678.1|992911_994186_+	radical SAM protein	NA	NA	NA	NA	NA
AZR99679.1|994339_994720_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99680.1|994727_995600_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZR99681.1|995905_996286_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZR99682.1|996535_997222_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AZR99683.1|997317_998220_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99684.1|998372_999422_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZR99685.1|999559_1000576_-|transposase	transposase	transposase	NA	NA	NA	NA
1003953:1003971	attR	CACGCCCAGCAGGCGGGCG	NA	NA	NA	NA
>prophage 9
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	1024380	1071932	4110595	tRNA,integrase,transposase	Yellowstone_lake_phycodnavirus(20.0%)	43	1011014:1011043	1049552:1049581
1011014:1011043	attL	GGTGCCAGTCCCCCTGCGGGGACAGGCACC	NA	NA	NA	NA
AZR99699.1|1024380_1025283_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99700.1|1025429_1026332_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99701.1|1026478_1027429_-|integrase	integrase	integrase	NA	NA	NA	NA
AZR99702.1|1027527_1028268_-	16S rRNA methyltransferase	NA	NA	NA	NA	NA
AZR99703.1|1028462_1030499_+	transketolase	NA	NA	NA	NA	NA
AZR99704.1|1030516_1031527_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZR99705.1|1031644_1032838_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZR99706.1|1032867_1033641_-	enoyl-ACP reductase	NA	NA	NA	NA	NA
AZR99707.1|1033637_1034828_-	acetate kinase	NA	NA	NA	NA	NA
AZR99708.1|1034853_1035792_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZS02272.1|1035788_1038137_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AZR99709.1|1038291_1038933_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZR99710.1|1040446_1040995_-	diguanylate cyclase	NA	NA	NA	NA	NA
AZR99711.1|1041013_1041499_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
AZR99712.1|1041676_1042615_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZR99713.1|1042617_1042935_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99714.1|1042980_1043925_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99715.1|1045605_1046256_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZR99716.1|1046309_1046645_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02273.1|1046659_1047502_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZR99717.1|1047518_1047800_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99718.1|1047873_1048137_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZR99719.1|1048380_1049331_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99720.1|1049629_1050367_-	flagellar biosynthesis sigma factor	NA	NA	NA	NA	NA
1049552:1049581	attR	GGTGCCTGTCCCCGCAGGGGGACTGGCACC	NA	NA	NA	NA
AZR99721.1|1050802_1051126_+	transcriptional regulator	NA	NA	NA	NA	NA
AZR99722.1|1051160_1051721_+	transcriptional regulator	NA	NA	NA	NA	NA
AZR99723.1|1051841_1052717_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZR99724.1|1052729_1053677_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AZR99725.1|1053778_1054072_+	two-component system response regulator	NA	NA	NA	NA	NA
AZR99726.1|1054098_1056156_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZR99727.1|1056170_1056671_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZR99728.1|1056744_1058451_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZR99729.1|1059314_1060367_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZR99730.1|1060419_1060809_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZR99731.1|1060817_1061450_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZR99732.1|1061549_1062566_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS02274.1|1063396_1064404_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZR99733.1|1064400_1066044_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZR99734.1|1066040_1066928_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZR99735.1|1067068_1067542_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AZR99736.1|1067531_1068554_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZR99737.1|1068550_1069978_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZR99738.1|1070915_1071932_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 10
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	1382431	1448880	4110595	integrase,transposase	uncultured_Caudovirales_phage(40.0%)	58	1414396:1414455	1448881:1449030
AZR99976.1|1382431_1383382_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99977.1|1383447_1383627_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99978.1|1383743_1384499_-	permease	NA	NA	NA	NA	NA
AZR99979.1|1384485_1385631_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99980.1|1386538_1387489_+|integrase	integrase	integrase	NA	NA	NA	NA
AZR99981.1|1387479_1387680_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99982.1|1387676_1388879_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AZR99983.1|1388875_1389634_-	hypothetical protein	NA	NA	NA	NA	NA
AZR99984.1|1390051_1390660_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99985.1|1391615_1394216_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZR99986.1|1394203_1397623_-	nuclease	NA	NA	NA	NA	NA
AZR99987.1|1397630_1398536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99988.1|1398674_1399253_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AZR99989.1|1399249_1400161_+	malyl-CoA thiolesterase	NA	NA	NA	NA	NA
AZS02301.1|1400174_1400855_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZR99990.1|1401056_1403096_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZR99991.1|1403114_1404101_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99992.1|1404126_1404924_+	citryl-CoA lyase	NA	NA	NA	NA	NA
AZR99993.1|1404920_1406114_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AZR99994.1|1406110_1407073_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99995.1|1407090_1408131_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZR99996.1|1408118_1408727_-	isopropylmalate isomerase	NA	NA	NA	NA	NA
AZR99997.1|1410315_1411311_+	hypothetical protein	NA	NA	NA	NA	NA
AZR99998.1|1411330_1412509_+	mandelate racemase	NA	NA	NA	NA	NA
AZR99999.1|1412519_1413437_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZS00001.1|1413492_1414443_-|integrase	integrase	integrase	NA	NA	NA	NA
1414396:1414455	attL	TTCGAGTCGACGTAGGAAGGTCAATCGGGCATGCTTATGGGTGTTCATCCGGCCGGGCTC	NA	NA	NA	NA
AZS00002.1|1414541_1415312_-	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZS00003.1|1415308_1415989_-	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AZS00004.1|1416055_1416844_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00005.1|1417090_1418107_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS00006.1|1418412_1419567_+	flagellar biosynthetic protein FlhB	NA	NA	NA	NA	NA
AZS00007.1|1424072_1424555_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00008.1|1424572_1424863_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZS02302.1|1424989_1425700_-	flagellar biosynthesis protein FlgA	NA	NA	NA	NA	NA
AZS00009.1|1425883_1426291_+	flagellar biosynthesis protein FlgB	NA	NA	NA	NA	NA
AZS00010.1|1426303_1426723_+	flagellar basal-body rod protein FlgC	NA	NA	NA	NA	NA
AZS00011.1|1426770_1427475_+	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZS00012.1|1427540_1428962_+	flagellar biosynthesis protein FlgE	NA	NA	NA	NA	NA
AZS00013.1|1429000_1429765_+	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AZS00014.1|1429808_1430594_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZS00015.1|1430593_1431283_+	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AZS00016.1|1431285_1432419_+	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZS00017.1|1432436_1433459_+	flagellar biosynthesis protein FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZS00018.1|1433528_1435175_+	flagellar biosynthesis protein FlgK	NA	NA	NA	NA	NA
AZS00019.1|1435208_1436741_+	flagellar biosynthesis protein FlgL	NA	NA	NA	NA	NA
AZS00020.1|1436819_1438640_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZS00021.1|1438760_1440380_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZS00022.1|1440558_1442001_+	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZS00023.1|1442217_1443234_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS00024.1|1443280_1444069_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZS00025.1|1444091_1444361_-	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZS00026.1|1444377_1445166_-	flagellar biosynthesis protein flip	NA	NA	NA	NA	NA
AZS00027.1|1445177_1445519_-	flagellar assembly protein FliO	NA	NA	NA	NA	NA
AZS00028.1|1445529_1446030_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZS00029.1|1446022_1447033_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZS00030.1|1447035_1447608_-	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AZS00031.1|1447749_1447962_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00032.1|1447977_1448880_-|integrase	integrase	integrase	NA	NA	NA	NA
1448881:1449030	attR	TTCGAGTCGACGTAGGAAGGTCAATCGGGCATGCTTATGGGTGTTCATCCGGCCGGGCTCCTTGAGTGAACTGGGGGGGTGGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACACCTAG	NA	NA	NA	NA
>prophage 11
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	1477099	1515689	4110595	protease,integrase	Emiliania_huxleyi_virus(14.29%)	35	1485392:1485409	1518373:1518390
AZS00058.1|1477099_1478434_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZS00059.1|1478486_1480823_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZS02305.1|1480948_1481512_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZS00060.1|1481520_1482612_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZS00061.1|1482683_1483139_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA	NA
AZS00062.1|1483139_1483934_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZS00063.1|1483930_1485112_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZS00064.1|1485098_1485704_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
1485392:1485409	attL	CGCCGTGGCCGGCCTGGC	NA	NA	NA	NA
AZS00065.1|1485700_1486474_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZS00066.1|1486485_1487313_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZS00067.1|1487474_1489838_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZS00068.1|1489905_1490625_-	glutamine amidotransferase	NA	NA	NA	NA	NA
AZS00069.1|1490748_1491174_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZS00070.1|1491208_1492111_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00071.1|1492276_1493203_+	stomatin 2	NA	NA	NA	NA	NA
AZS00072.1|1493268_1494426_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZS00073.1|1494406_1494874_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZS00074.1|1495021_1495972_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00075.1|1495988_1496423_+	cyclase	NA	NA	NA	NA	NA
AZS00076.1|1496412_1496763_+	electron transporter	NA	NA	NA	NA	NA
AZS00077.1|1496959_1498114_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS00078.1|1498110_1499283_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS00079.1|1499330_1500224_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZS00080.1|1500269_1500707_+	thioesterase	NA	NA	NA	NA	NA
AZS00081.1|1500766_1501456_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00082.1|1501465_1502368_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00083.1|1502514_1503465_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00084.1|1503563_1504526_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AZS00085.1|1504752_1505907_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AZS00086.1|1505917_1509160_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AZS00087.1|1510181_1510826_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
AZS00088.1|1510836_1511736_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00089.1|1511783_1512869_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZS00090.1|1512865_1514560_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS00091.1|1514738_1515689_+|integrase	integrase	integrase	NA	NA	NA	NA
1518373:1518390	attR	CGCCGTGGCCGGCCTGGC	NA	NA	NA	NA
>prophage 13
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	1657124	1728230	4110595	integrase	Ectocarpus_siliculosus_virus(11.11%)	55	1679221:1679239	1732801:1732819
AZS00217.1|1657124_1658075_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00218.1|1658096_1659317_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AZS00219.1|1659502_1660915_+	glutamine synthetase	NA	NA	NA	NA	NA
AZS00220.1|1660978_1662046_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZS00221.1|1662045_1663533_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZS02313.1|1663542_1664487_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00222.1|1664646_1665345_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AZS00223.1|1665422_1666328_+	pirin	NA	NA	NA	NA	NA
AZS00224.1|1666347_1667250_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00225.1|1667396_1668191_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZS00226.1|1668195_1669866_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZS00227.1|1669989_1671039_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00228.1|1671360_1672137_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AZS00229.1|1672201_1673104_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00230.1|1674397_1675201_+	2,5-diketo-D-gluconic acid reductase	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZS00231.1|1677894_1678281_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZS00232.1|1678296_1680387_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
1679221:1679239	attL	GCCATCGCCGCCGCGCAGG	NA	NA	NA	NA
AZS00233.1|1680438_1681392_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZS02314.1|1681406_1682294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00234.1|1682431_1683958_+	methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZS02315.1|1684056_1684557_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZS00235.1|1684880_1686836_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZS00236.1|1687003_1689088_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02316.1|1689114_1689540_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00237.1|1690755_1691526_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZS00238.1|1691525_1692266_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZS00239.1|1692307_1693477_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZS00240.1|1693508_1695593_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZS00241.1|1695589_1696480_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZS00242.1|1696476_1697574_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZS00243.1|1697596_1698886_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AZS00244.1|1698897_1699923_+	Vi polysaccharide biosynthesis protein VipB/TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZS00245.1|1699919_1701977_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZS00246.1|1701990_1703166_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZS00247.1|1703247_1704198_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00248.1|1704256_1705030_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS00249.1|1705022_1706579_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZS00250.1|1706575_1707526_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00251.1|1708852_1709455_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00252.1|1709694_1710396_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZS00253.1|1710389_1711172_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZS00254.1|1711356_1712307_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00255.1|1712405_1713143_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZS00256.1|1713332_1714091_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS00257.1|1714137_1715127_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00258.1|1715304_1716273_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AZS00259.1|1717812_1718781_+	AAA family ATPase	NA	NA	NA	NA	NA
AZS00260.1|1718789_1719731_+	MoxR protein	NA	NA	NA	NA	NA
AZS02317.1|1720204_1721215_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02319.1|1721205_1722720_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00261.1|1722716_1724063_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02318.1|1724065_1725100_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZS00262.1|1725149_1726775_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZS00263.1|1726868_1727348_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00264.1|1727327_1728230_-|integrase	integrase	integrase	NA	NA	NA	NA
1732801:1732819	attR	CCTGCGCGGCGGCGATGGC	NA	NA	NA	NA
>prophage 14
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	1749069	1810417	4110595	tRNA,integrase	uncultured_Caudovirales_phage(12.5%)	54	1787920:1787979	1811527:1811926
AZS00280.1|1749069_1750020_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00281.1|1750128_1750317_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02323.1|1750313_1751036_-	NADPH-dependent FMN reductase	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZS00282.1|1751474_1752662_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02324.1|1752665_1753016_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00283.1|1753249_1754662_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00284.1|1754765_1755737_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00285.1|1755750_1756464_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS00286.1|1756468_1757386_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00287.1|1757492_1757789_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00288.1|1757887_1758838_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00289.1|1759996_1762930_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZS00290.1|1762929_1763274_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZS00291.1|1763270_1764899_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZS00292.1|1764898_1765375_+	pesticidal protein Cry1Ia	NA	NA	NA	NA	NA
AZS00293.1|1765374_1765656_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZS00294.1|1765652_1765979_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZS00295.1|1766134_1767085_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00296.1|1767128_1767671_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00297.1|1767768_1768617_+	hydrolase	NA	NA	NA	NA	NA
AZS02325.1|1768666_1769116_+	cytidine deaminase	NA	S4VYT2	Pandoravirus	38.2	2.0e-06
AZS00298.1|1769112_1770114_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZS00299.1|1770126_1770921_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS00300.1|1770969_1772871_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS00301.1|1772867_1773491_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00302.1|1773617_1774742_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS00303.1|1775122_1776727_+	ABC transporter ATP-binding protein	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AZS00304.1|1776882_1777659_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZS00305.1|1777743_1778742_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00306.1|1778738_1779512_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS00307.1|1780496_1781447_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00308.1|1781470_1781935_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZS00309.1|1782081_1783290_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AZS00310.1|1783333_1783771_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AZS00311.1|1783889_1785179_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZS00312.1|1787919_1788822_-|integrase	integrase	integrase	NA	NA	NA	NA
1787920:1787979	attL	CTAGCTGTGAACTGTCAATAGGTTGTATTCGTCCAGGTTGAGTCTGGAGATGGGTACAGC	NA	NA	NA	NA
AZS00313.1|1788968_1789985_-	glycine cleavage system protein T	NA	NA	NA	NA	NA
AZS00314.1|1790163_1791198_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AZS00315.1|1791194_1791821_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZS00316.1|1791817_1792870_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZS00317.1|1792919_1793690_+	DNAase	NA	NA	NA	NA	NA
AZS00318.1|1793740_1794577_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00319.1|1794772_1795513_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00320.1|1795587_1796331_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00321.1|1796992_1797766_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZS02326.1|1798903_1800193_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AZS00322.1|1801803_1803051_-	allantoate amidohydrolase	NA	NA	NA	NA	NA
AZS00323.1|1803060_1804770_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZS00324.1|1804766_1805705_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
AZS00325.1|1805701_1806985_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZS00326.1|1806988_1807471_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS00327.1|1807471_1808458_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00328.1|1808630_1809350_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00329.1|1809466_1810417_-|integrase	integrase	integrase	NA	NA	NA	NA
1811527:1811926	attR	GCTGTACCCATCTCCAGACTCAACCTGGACGAATACAACCTATTGACAGTTCACAGCTAGGCGTGCTGGGCCTGATCCTCGATCCGCTTTTCTCGATGCTGCCGCTGACGCGCGCCATCGGCGAGGTGACCTGGAGCGCCAACAACGAATTCCTGCTGGTCGCCATCCCGCTGTTCATCATGCTGGGCGAGGTGCTGCTGCGCGCCGGTTTTGCCGAACGCATGTATGCCGCCATGAGCCTGTAGCTGTCCTGGCTGCCGGGCGGGCTGATGCACGCCAACATCGGCGCCTCCACGCTGTTCTCCGCCACATCCGGCTCCAGCGTGGCCACCGCCGCCACGGTGGGCACGGTAGCGATCCCGCAGATCAAGAAGTACGGCTACAACGAGCCGCTGTTCCT	NA	NA	NA	NA
>prophage 15
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	1991602	2061254	4110595	tRNA,integrase	Staphylococcus_phage(16.67%)	58	2039578:2039603	2066401:2066426
AZS00459.1|1991602_1994260_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZS02337.1|1994337_1995495_-	transporter	NA	NA	NA	NA	NA
AZS00460.1|1995536_1996049_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00461.1|1996171_1996609_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS00462.1|1996933_1997836_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00463.1|1997982_1998885_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00464.1|1999138_2000944_+	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AZS00465.1|2001057_2001225_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZS00466.1|2001288_2001525_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZS02338.1|2001893_2003045_-	transporter	NA	NA	NA	NA	NA
AZS00467.1|2004656_2005559_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00468.1|2006010_2007012_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00469.1|2007184_2008042_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS00470.1|2008038_2009301_+	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZS00471.1|2009401_2009776_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZS00472.1|2009848_2011036_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZS00473.1|2011120_2011891_+	spermidine synthase	NA	NA	NA	NA	NA
AZS00474.1|2012004_2012769_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00475.1|2012719_2014021_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZS00476.1|2014017_2014824_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS00477.1|2016568_2017540_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00478.1|2017696_2018209_+	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZS00479.1|2018367_2019342_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00480.1|2020342_2021137_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZS02339.1|2021162_2021969_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZS00481.1|2022079_2022670_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00482.1|2022680_2023859_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00483.1|2023961_2024336_+	DNA-binding protein	NA	NA	NA	NA	NA
AZS00484.1|2024588_2025920_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZS00485.1|2025986_2029217_+	acriflavine resistance protein B	NA	NA	NA	NA	NA
AZS00486.1|2030707_2031454_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZS00487.1|2031538_2032000_+	ACP synthase	NA	NA	NA	NA	NA
AZS00488.1|2032037_2033096_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZS00489.1|2033058_2034888_+	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AZS00490.1|2034927_2035500_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZS00491.1|2035669_2036638_+	MFS transporter	NA	NA	NA	NA	NA
AZS00492.1|2036647_2036989_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00493.1|2036924_2037746_-	preQ(1) synthase	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AZS00494.1|2038064_2039387_+	isocitrate lyase	NA	NA	NA	NA	NA
2039578:2039603	attL	GTGCCTGTCCCCGCCGGGACAGGCAC	NA	NA	NA	NA
AZS00495.1|2039746_2040382_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00496.1|2040341_2041244_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00497.1|2042162_2043035_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS00498.1|2043112_2044252_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00499.1|2044610_2045867_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZS00500.1|2045872_2046400_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZS00501.1|2046404_2047223_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS00502.1|2047222_2047945_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS00503.1|2047966_2048281_+	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AZS00504.1|2048298_2049447_+	carnitine dehydratase	NA	NA	NA	NA	NA
AZS00505.1|2049477_2050353_-	esterase	NA	NA	NA	NA	NA
AZS00506.1|2050349_2051669_-	acyl--CoA ligase	NA	NA	NA	NA	NA
AZS00507.1|2051741_2052938_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZS00508.1|2052948_2054436_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00509.1|2054676_2056503_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00510.1|2057030_2057930_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00511.1|2058067_2059033_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00512.1|2059131_2060082_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00513.1|2060303_2061254_+|integrase	integrase	integrase	NA	NA	NA	NA
2066401:2066426	attR	GTGCCTGTCCCGGCGGGGACAGGCAC	NA	NA	NA	NA
>prophage 16
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2072750	2115177	4110595	integrase,transposase	Erysipelothrix_phage(20.0%)	41	2106877:2106894	2116507:2116524
AZS00527.1|2072750_2073701_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00528.1|2073687_2074692_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00529.1|2074838_2075135_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00530.1|2075309_2076662_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZS00531.1|2076804_2077821_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS02340.1|2079800_2080814_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZS00532.1|2080900_2081806_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00533.1|2081962_2082307_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00534.1|2082464_2082923_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZS00535.1|2082936_2085153_+	aldehyde oxidase	NA	NA	NA	NA	NA
AZS00536.1|2085149_2086211_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00537.1|2086239_2087214_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS00538.1|2087165_2087984_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZS00539.1|2087996_2088605_-	peptidase S16	NA	NA	NA	NA	NA
AZS00540.1|2088779_2089175_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00541.1|2089193_2090633_+	disulfide bond formation protein DsbA	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZS00542.1|2090661_2091009_+	aldehyde-activating protein	NA	NA	NA	NA	NA
AZS00543.1|2091027_2091930_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02341.1|2092052_2092532_+	acetyltransferase	NA	NA	NA	NA	NA
AZS00544.1|2092630_2093581_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00545.1|2093664_2095482_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZS00546.1|2095555_2096203_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00547.1|2096215_2097145_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00548.1|2097314_2097779_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00549.1|2098026_2098707_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00550.1|2098755_2100447_+	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZS00551.1|2100462_2101014_-	ATPase	NA	NA	NA	NA	NA
AZS00552.1|2101010_2101382_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00553.1|2101494_2102331_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZS00554.1|2102341_2102821_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00555.1|2102963_2103143_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00556.1|2103272_2104247_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS00557.1|2104377_2104734_+	RNA signal recognition particle	NA	NA	NA	NA	NA
AZS02342.1|2104723_2105599_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZS00558.1|2105697_2106582_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00559.1|2106603_2107899_-	hypothetical protein	NA	NA	NA	NA	NA
2106877:2106894	attL	GCCCAGCGCCTGCAGGGC	NA	NA	NA	NA
AZS00560.1|2108847_2109498_+	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AZS02343.1|2109585_2111106_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZS00561.1|2111363_2113229_+	AAA family ATPase	NA	NA	NA	NA	NA
AZS00562.1|2113312_2114176_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00563.1|2114274_2115177_-|integrase	integrase	integrase	NA	NA	NA	NA
2116507:2116524	attR	GCCCAGCGCCTGCAGGGC	NA	NA	NA	NA
>prophage 17
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2121195	2174041	4110595	tRNA,protease,integrase	Klosneuvirus(22.22%)	50	2140473:2140490	2168224:2168241
AZS00570.1|2121195_2122098_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00571.1|2122312_2123287_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02344.1|2123283_2123427_+	cbb3-type cytochrome oxidase maturation protein	NA	NA	NA	NA	NA
AZS00572.1|2125048_2125711_+	peptidase S41	NA	NA	NA	NA	NA
AZS00573.1|2125713_2125890_+	cytochrome oxidase	NA	NA	NA	NA	NA
AZS00574.1|2125886_2126825_+	cytochrome oxidase subunit III	NA	NA	NA	NA	NA
AZS00575.1|2126916_2128407_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZS00576.1|2128492_2128645_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00577.1|2128658_2128898_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00578.1|2128993_2129737_+	permease	NA	NA	NA	NA	NA
AZS02345.1|2129769_2130270_+	GCN5 family acetyltransferase	NA	NA	NA	NA	NA
AZS00579.1|2130368_2131292_+	multidrug ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZS00580.1|2131288_2132050_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZS02346.1|2132065_2133148_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00581.1|2133350_2134301_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00582.1|2134399_2135350_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00583.1|2135309_2135723_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZS00584.1|2136007_2136307_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00585.1|2136716_2138999_-	RNA polymerase sigma factor 70	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AZS00586.1|2139684_2141715_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
2140473:2140490	attL	GGCGCGCCAGCTCGCGTT	NA	NA	NA	NA
AZS00587.1|2141734_2141947_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZS00588.1|2142224_2142764_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AZS00589.1|2142877_2144173_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZS00590.1|2144249_2145407_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZS00591.1|2145590_2146490_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZS00592.1|2146508_2147813_-	HflK protein	NA	NA	NA	NA	NA
AZS00593.1|2147778_2148885_-	GTPase HflX	NA	NA	NA	NA	NA
AZS00594.1|2148972_2149209_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
AZS00595.1|2149347_2150418_-	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZS00596.1|2150421_2151777_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZS02347.1|2151803_2152961_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZS00597.1|2152966_2153605_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02348.1|2153606_2154902_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZS00598.1|2154951_2156238_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AZS00599.1|2156253_2156760_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00600.1|2156756_2157905_-	23S rRNA (adenine(2503)-C2)-methyltransferase	NA	NA	NA	NA	NA
AZS00601.1|2157932_2158358_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZS00602.1|2158680_2161563_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZS00603.1|2161655_2162411_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00604.1|2163176_2164526_+	histidine kinase	NA	NA	NA	NA	NA
AZS00605.1|2164672_2165575_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00606.1|2165673_2166624_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00607.1|2166697_2167171_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00608.1|2167196_2168405_+	class V aminotransferase	NA	NA	NA	NA	NA
2168224:2168241	attR	AACGCGAGCTGGCGCGCC	NA	NA	NA	NA
AZS00609.1|2168401_2169175_-|tRNA	tRNA (guanine-N1)-methyltransferase	tRNA	NA	NA	NA	NA
AZS00610.1|2169174_2169798_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZS00611.1|2169963_2170224_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZS00612.1|2170527_2171109_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00613.1|2171175_2171430_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00614.1|2171416_2174041_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2201824	2257060	4110595	protease,integrase	Lake_Baikal_phage(25.0%)	52	2219005:2219064	2257061:2257157
AZS00635.1|2201824_2202727_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00636.1|2202975_2203785_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS00637.1|2203957_2204860_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00638.1|2204856_2205750_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZS00639.1|2205874_2206069_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZS00640.1|2206068_2206410_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AZS00641.1|2206419_2208282_-	molecular chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZS00642.1|2208411_2208924_-	co-chaperone HscB	NA	NA	NA	NA	NA
AZS00643.1|2208926_2209250_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZS00644.1|2209251_2209662_-	scaffolding protein	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZS00645.1|2209699_2210911_-	cysteine desulfurase IscS	NA	NA	NA	NA	NA
AZS00646.1|2210928_2211441_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS00647.1|2211656_2212148_-	protein tyrosine phosphatase	NA	NA	NA	NA	NA
AZS00648.1|2212400_2214437_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AZS00649.1|2214514_2215717_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AZS00650.1|2215845_2216496_+	LexA family transcriptional regulator	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
AZS00651.1|2216722_2217652_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS00652.1|2217697_2218057_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00653.1|2218053_2218956_-|integrase	integrase	integrase	NA	NA	NA	NA
2219005:2219064	attL	CCGGCCGGGCTCCTTGAGTGAACTGGGGGGGTGGCGATTTCCAGTTTCTCAAATCCGGTT	NA	NA	NA	NA
AZS00654.1|2219574_2219787_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00655.1|2219804_2220536_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00656.1|2220570_2221212_-	succinyl-CoA--3-ketoacid-CoA transferase	NA	NA	NA	NA	NA
AZS00657.1|2221204_2221873_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZS00658.1|2224085_2224862_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS00659.1|2224883_2226041_-	thiolase	NA	NA	NA	NA	NA
AZS00660.1|2226037_2226469_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00661.1|2226465_2227263_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS00662.1|2227282_2227738_-	oxidoreductase	NA	NA	NA	NA	NA
AZS00663.1|2227750_2228722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00664.1|2228787_2230011_-	CoA-transferase	NA	NA	NA	NA	NA
AZS00665.1|2230238_2231189_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00666.1|2231312_2233766_-	DNA-binding protein	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZS00667.1|2233954_2235259_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZS00668.1|2235363_2236017_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZS00669.1|2236019_2237330_-	trigger factor	NA	NA	NA	NA	NA
AZS00670.1|2237526_2238087_+	hypothetical protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZS00671.1|2238198_2238399_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZS00672.1|2238744_2239311_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00673.1|2239394_2239598_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZS00674.1|2239904_2240225_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00675.1|2240266_2240548_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00676.1|2240622_2241879_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS00677.1|2242261_2242591_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00678.1|2244161_2244983_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZS00679.1|2244982_2246122_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZS00680.1|2246128_2247025_+	ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZS00681.1|2247039_2248947_+	ABC transporter	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZS00682.1|2249306_2251919_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZS00683.1|2251971_2254272_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZS00684.1|2254268_2255477_-	aminotransferase	NA	NA	NA	NA	NA
AZS00685.1|2255738_2256113_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00686.1|2256109_2257060_-|integrase	integrase	integrase	NA	NA	NA	NA
2257061:2257157	attR	CCGGCCGGGCTCCTTGAGTGAACTGGGGGGGTGGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACA	NA	NA	NA	NA
>prophage 19
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2260167	2314437	4110595	tRNA,integrase,transposase	Klosneuvirus(15.38%)	47	2257709:2257728	2324010:2324029
2257709:2257728	attL	GCGCGCGCCAGCCGCGCCGC	NA	NA	NA	NA
AZS00688.1|2260167_2263029_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZS00689.1|2263031_2263538_+	signal peptidase II	NA	NA	NA	NA	NA
AZS00690.1|2263642_2264851_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZS00691.1|2264852_2265791_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00692.1|2265952_2266426_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZS00693.1|2266422_2267373_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00694.1|2267483_2267924_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00695.1|2268052_2269282_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZS00696.1|2269320_2270142_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00697.1|2270195_2271347_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00698.1|2271438_2271909_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00699.1|2274477_2277027_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZS00700.1|2277097_2279671_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZS00701.1|2279936_2280137_+	general stress protein CsbD	NA	NA	NA	NA	NA
AZS00702.1|2280168_2280330_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00703.1|2280387_2280726_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZS00704.1|2280874_2281777_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00705.1|2281923_2282826_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00706.1|2283648_2284317_+	arylesterase	NA	NA	NA	NA	NA
AZS02351.1|2284298_2286254_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZS00707.1|2286496_2287246_+	glycerophosphoryl diester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZS00708.1|2287258_2288122_+	competence protein ComJ	NA	NA	NA	NA	NA
AZS00709.1|2288125_2289541_-	dihydrolipoamide dehydrogenase	NA	NA	NA	NA	NA
AZS00710.1|2289674_2290403_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZS00711.1|2290541_2290742_-	heavy metal transporter	NA	NA	NA	NA	NA
AZS00712.1|2290917_2291316_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00713.1|2291339_2292740_-	23S rRNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZS00714.1|2292858_2293611_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00715.1|2293899_2294499_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00716.1|2294603_2295383_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZS00717.1|2295379_2296264_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZS00718.1|2296281_2297061_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AZS00719.1|2297045_2297804_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZS02352.1|2297941_2298577_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZS00720.1|2298844_2299861_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS00721.1|2299958_2300999_-|tRNA	tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZS00722.1|2301133_2302426_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZS00723.1|2303785_2304169_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZS00724.1|2304186_2304774_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZS00725.1|2304811_2305762_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00726.1|2305860_2306421_-	L-2,4-diaminobutyric acid acetyltransferase	NA	NA	NA	NA	NA
AZS00727.1|2306417_2306963_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00728.1|2307158_2308187_+	silent information regulator protein Sir2	NA	NA	NA	NA	NA
AZS00729.1|2308227_2309568_+	hypothetical protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZS00730.1|2309676_2310681_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00731.1|2310787_2313388_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS00732.1|2313534_2314437_+|integrase	integrase	integrase	NA	NA	NA	NA
2324010:2324029	attR	GCGCGCGCCAGCCGCGCCGC	NA	NA	NA	NA
>prophage 20
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2353598	2417128	4110595	protease,integrase	uncultured_Caudovirales_phage(11.11%)	50	2380137:2380153	2418915:2418931
AZS00769.1|2353598_2354501_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00770.1|2354802_2355279_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZS00771.1|2355902_2357540_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZS00772.1|2357570_2358884_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZS02359.1|2359044_2359335_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00773.1|2359435_2360758_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00774.1|2360754_2361657_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00775.1|2361803_2362706_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00776.1|2362835_2363219_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00777.1|2363283_2364306_-	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00778.1|2364334_2365156_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZS02360.1|2365181_2366879_-	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
AZS00779.1|2366943_2368020_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZS00780.1|2368179_2369043_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00781.1|2369073_2369643_+	phosphohydrolase	NA	NA	NA	NA	NA
AZS00782.1|2369659_2370511_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
AZS00783.1|2371568_2372450_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AZS00784.1|2372524_2373514_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZS00785.1|2373576_2374527_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZS00786.1|2374589_2375447_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00787.1|2375506_2375995_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZS00788.1|2377567_2378758_+	hemolysin D	NA	NA	NA	NA	NA
AZS00789.1|2378754_2380341_+	multidrug resistance protein B	NA	NA	NA	NA	NA
2380137:2380153	attL	CGGCGCCGGCATGTCGC	NA	NA	NA	NA
AZS00790.1|2380359_2381427_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZS02361.1|2381531_2383061_-	DNA-binding protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.0e-14
AZS00791.1|2383495_2385070_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS00792.1|2385177_2386194_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS00793.1|2386190_2387030_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS02362.1|2387040_2388672_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.7e-21
AZS00794.1|2388668_2389571_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00795.1|2389761_2391036_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZS00796.1|2391065_2391356_+	cupin	NA	NA	NA	NA	NA
AZS02363.1|2391428_2392442_+	acetylpolyamine aminohydrolase	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZS00797.1|2392461_2393724_+	allantoate amidohydrolase	NA	NA	NA	NA	NA
AZS00798.1|2393726_2394650_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00799.1|2394646_2396140_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZS00800.1|2396150_2397083_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZS00801.1|2397300_2398590_+	aminotransferase	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZS02364.1|2398624_2399968_-	sodium:alanine symporter	NA	NA	NA	NA	NA
AZS00802.1|2400040_2401561_-	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
AZS00803.1|2401715_2402447_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00804.1|2402544_2403855_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZS00805.1|2403870_2404782_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZS02365.1|2404778_2405366_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZS00806.1|2405427_2405814_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZS00807.1|2405825_2406296_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZS00808.1|2406307_2406931_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZS00809.1|2406951_2409699_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS00810.1|2415975_2416191_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00811.1|2416177_2417128_+|integrase	integrase	integrase	NA	NA	NA	NA
2418915:2418931	attR	CGGCGCCGGCATGTCGC	NA	NA	NA	NA
>prophage 21
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2562069	2615652	4110595	tRNA,protease,integrase	Salmonella_phage(22.22%)	47	2599258:2599276	2623919:2623937
AZS00931.1|2562069_2562972_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00932.1|2563118_2563901_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZS00933.1|2563989_2565216_-	transporter	NA	NA	NA	NA	NA
AZS00934.1|2565941_2567327_+	alcaligin biosynthesis protein	NA	NA	NA	NA	NA
AZS00935.1|2567345_2567951_+	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZS00936.1|2567947_2569804_+	IucA/IucC family protein	NA	NA	NA	NA	NA
AZS00937.1|2569800_2570601_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00938.1|2570615_2571809_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AZS00939.1|2571876_2572851_+	transcriptional regulator	NA	NA	NA	NA	NA
AZS00940.1|2572973_2574197_+	multidrug transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZS00941.1|2574307_2576512_+	porin	NA	NA	NA	NA	NA
AZS00942.1|2576806_2577466_+	antibiotic resistance protein	NA	NA	NA	NA	NA
AZS00943.1|2577473_2577680_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00944.1|2578018_2578774_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00945.1|2578789_2578951_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00946.1|2579044_2579560_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZS00947.1|2579832_2580150_+	virulence factor	NA	NA	NA	NA	NA
AZS00948.1|2580337_2580574_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00949.1|2580864_2582220_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZS00950.1|2582266_2583607_-	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZS00951.1|2583708_2584341_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZS00952.1|2584340_2586710_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZS00953.1|2586742_2587702_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZS00954.1|2587688_2588375_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZS00955.1|2588371_2588704_+	multidrug transporter	NA	NA	NA	NA	NA
AZS00956.1|2588867_2589770_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00957.1|2589916_2590819_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS00958.1|2590815_2592882_-	cation acetate symporter	NA	NA	NA	NA	NA
AZS00959.1|2592881_2593154_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00960.1|2593937_2595722_+	ATPase	NA	NA	NA	NA	NA
AZS00961.1|2595745_2597911_+	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZS00962.1|2597921_2598521_+	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AZS00963.1|2598586_2601301_+	histidine kinase	NA	NA	NA	NA	NA
2599258:2599276	attL	CGAACTGGCGCTGCGCCGC	NA	NA	NA	NA
AZS00964.1|2601342_2602038_+	two-component system response regulator	NA	NA	NA	NA	NA
AZS00965.1|2602046_2602949_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS00966.1|2603095_2604337_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00967.1|2604486_2605467_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00968.1|2605665_2606922_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZS00969.1|2607124_2607550_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00970.1|2607591_2607954_-	cytochrome	NA	NA	NA	NA	NA
AZS00971.1|2607966_2608320_-	cytochrome C	NA	NA	NA	NA	NA
AZS00972.1|2608486_2609437_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02376.1|2609529_2610417_+	ATP-binding protein	NA	NA	NA	NA	NA
AZS00973.1|2610438_2611611_+	hypothetical protein	NA	NA	NA	NA	NA
AZS00974.1|2611614_2612157_-	acetyltransferase	NA	NA	NA	NA	NA
AZS00975.1|2612194_2612569_-	hypothetical protein	NA	NA	NA	NA	NA
AZS00976.1|2612901_2615652_+|protease	zinc protease	protease	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
2623919:2623937	attR	CGAACTGGCGCTGCGCCGC	NA	NA	NA	NA
>prophage 22
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2689114	2729735	4110595	tRNA,integrase	Salmonella_phage(33.33%)	41	2685047:2685065	2730323:2730341
2685047:2685065	attL	GCGCCGTCGAGCAGCTTGC	NA	NA	NA	NA
AZS01041.1|2689114_2690017_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01042.1|2690175_2690358_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01043.1|2690457_2691051_-	twin-arginine translocation pathway signal	NA	NA	NA	NA	NA
AZS01044.1|2691237_2692329_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01045.1|2692828_2693239_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS01046.1|2693297_2693627_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
AZS01047.1|2693644_2696062_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZS01048.1|2696074_2697097_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZS01049.1|2697171_2697531_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZS01050.1|2697546_2697744_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZS01051.1|2698079_2698982_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01052.1|2699224_2699674_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZS01053.1|2699670_2700621_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01054.1|2700731_2702180_+	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AZS01055.1|2702294_2702540_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01056.1|2702727_2703630_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01057.1|2703874_2704588_-	methyltransferase type 11	NA	NA	NA	NA	NA
AZS01058.1|2704710_2704938_-	GCN5 family acetyltransferase	NA	NA	NA	NA	NA
AZS01059.1|2705232_2705871_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01060.1|2705979_2707014_+	hydrolase	NA	NA	NA	NA	NA
AZS01061.1|2707010_2707913_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01062.1|2708376_2708901_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZS01063.1|2709372_2710434_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZS01064.1|2710517_2712152_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZS01065.1|2712153_2712957_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AZS01066.1|2712985_2713945_-	ABC transporter	NA	NA	NA	NA	NA
AZS01067.1|2713948_2715463_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01068.1|2715499_2716504_-	peptidase M20	NA	NA	NA	NA	NA
AZS01069.1|2716935_2717406_-	histidine kinase	NA	NA	NA	NA	NA
AZS01070.1|2717441_2718053_-	RhtB family transporter	NA	NA	NA	NA	NA
AZS01071.1|2718083_2718707_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS01072.1|2718787_2720320_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01073.1|2720354_2721572_-	MFS transporter	NA	NA	NA	NA	NA
AZS01074.1|2721639_2722671_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZS01075.1|2722667_2723837_-	amine oxidase	NA	NA	NA	NA	NA
AZS01076.1|2723830_2724511_-	anti-sigma factor	NA	NA	NA	NA	NA
AZS01077.1|2724672_2725515_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01078.1|2725677_2726649_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS01079.1|2726820_2727699_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01080.1|2727721_2728792_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01081.1|2728832_2729735_-|integrase	integrase	integrase	NA	NA	NA	NA
2730323:2730341	attR	GCGCCGTCGAGCAGCTTGC	NA	NA	NA	NA
>prophage 23
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2785248	2858118	4110595	tRNA,integrase,transposase	Moraxella_phage(16.67%)	59	2791260:2791319	2840944:2841040
AZS01126.1|2785248_2785665_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZS01127.1|2785775_2786408_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZS01128.1|2786436_2786880_+	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	NA	NA	NA	NA
AZS01129.1|2786901_2787993_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02388.1|2788047_2788836_-	class II aldolase	NA	NA	NA	NA	NA
AZS01130.1|2788983_2789604_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZS01131.1|2789743_2790217_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
2791260:2791319	attL	TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAA	NA	NA	NA	NA
AZS01132.1|2791356_2792307_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01133.1|2792303_2799965_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZS01134.1|2800205_2804252_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZS01135.1|2804609_2805146_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS01136.1|2805142_2806441_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS01137.1|2806520_2807549_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS01138.1|2807857_2808760_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01139.1|2808756_2809707_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01140.1|2810023_2810629_+	fimbrial protein	NA	NA	NA	NA	NA
AZS01141.1|2810682_2811996_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZS01142.1|2812070_2812541_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AZS01143.1|2812540_2813329_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01144.1|2813339_2814992_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZS01145.1|2815079_2815982_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02389.1|2817191_2817698_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZS01146.1|2817694_2818459_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AZS01147.1|2818474_2818759_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA	NA
AZS01148.1|2818823_2819813_-	phenylacetate-CoA oxygenase	NA	NA	NA	NA	NA
AZS01149.1|2819984_2820914_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AZS01150.1|2820885_2821572_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZS01151.1|2821605_2822151_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZS01152.1|2822195_2823461_+	peptidase M48	NA	NA	NA	NA	NA
AZS01153.1|2823457_2824360_+	GTPase RsgA	NA	NA	NA	NA	NA
AZS01154.1|2825541_2826486_-	peptide ABC transporter	NA	NA	NA	NA	NA
AZS01155.1|2826580_2828098_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01156.1|2828139_2829768_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZS01157.1|2829875_2830757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01158.1|2831017_2831245_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01159.1|2833869_2834244_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZS01160.1|2834268_2834607_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS01161.1|2834650_2836285_-	NAD synthetase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZS01162.1|2836323_2837670_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZS02390.1|2837777_2839199_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZS01163.1|2839268_2839853_-	nitroreductase	NA	NA	NA	NA	NA
AZS01164.1|2839955_2840906_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01165.1|2841040_2842147_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
2840944:2841040	attR	TTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACATCTAGTCGTCTATCTTGTTGGGTTCAATAAGAAATAA	NA	NA	NA	NA
AZS01166.1|2842157_2843255_+	cyclic pyranopterin phosphate synthase MoaA	NA	NA	NA	NA	NA
AZS01167.1|2843399_2844605_-	molybdopterin biosynthesis protein MoeA	NA	NA	NA	NA	NA
AZS01168.1|2844611_2845133_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA	NA
AZS02391.1|2845129_2845612_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZS01169.1|2845617_2845869_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AZS01170.1|2845849_2846335_-	cyclic pyranopterin monophosphate synthase accessory protein	NA	NA	NA	NA	NA
AZS01171.1|2846470_2849932_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01172.1|2849949_2850834_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AZS01173.1|2850843_2851275_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02392.1|2851521_2852025_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZS01174.1|2852102_2853503_+	MFS transporter	NA	NA	NA	NA	NA
AZS01175.1|2853577_2854453_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02393.1|2854449_2855457_-	biotin synthase	NA	NA	NA	NA	NA
AZS01176.1|2855924_2856230_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01177.1|2856320_2856911_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01178.1|2857101_2858118_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 24
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2861309	2928072	4110595	protease,integrase	uncultured_Mediterranean_phage(28.57%)	50	2872238:2872297	2928073:2928175
AZS01181.1|2861309_2862212_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01182.1|2862310_2863261_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01183.1|2863257_2864052_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZS01184.1|2864083_2864788_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS01185.1|2864862_2865663_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01186.1|2865659_2866067_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZS01187.1|2866063_2866705_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZS02394.1|2866697_2868698_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZS01188.1|2869958_2871290_+	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AZS01189.1|2871286_2872189_-|integrase	integrase	integrase	NA	NA	NA	NA
2872238:2872297	attL	CCGGCCGGGCTCCTTGAGTGAACTGGGGGGGTGGCGATTTCCAGTTTCTCAAATCCGGTT	NA	NA	NA	NA
AZS01190.1|2873943_2874210_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01191.1|2874917_2875256_+	transcriptional regulator	NA	NA	NA	NA	NA
AZS01192.1|2876584_2878864_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS01193.1|2879809_2880412_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01194.1|2880508_2881798_+	MFS transporter	NA	NA	NA	NA	NA
AZS01195.1|2881855_2882587_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZS01196.1|2882583_2883387_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZS01197.1|2883383_2884472_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZS01198.1|2884468_2885398_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS01199.1|2885546_2886692_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01200.1|2886713_2887616_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01201.1|2887994_2891816_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZS01202.1|2891972_2892641_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01203.1|2892645_2894319_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AZS01204.1|2894337_2895657_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AZS01205.1|2895661_2897977_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AZS02395.1|2898032_2900201_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZS02396.1|2900197_2904763_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AZS01206.1|2905476_2905791_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZS01207.1|2906018_2906264_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZS01208.1|2906385_2906877_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AZS01209.1|2906976_2908182_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
AZS01210.1|2908297_2909695_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZS01211.1|2909811_2910390_-	superoxide dismutase	NA	NA	NA	NA	NA
AZS01212.1|2910462_2911854_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZS01213.1|2912021_2912972_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01214.1|2913252_2913873_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AZS01215.1|2913869_2914283_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZS01216.1|2914279_2915323_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZS01217.1|2915378_2915567_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01218.1|2915576_2916341_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZS01219.1|2916431_2917088_+	adenylate kinase	NA	NA	NA	NA	NA
AZS01220.1|2917179_2917938_+	3-hydroxy-2-methylbutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS01221.1|2917963_2919565_+	murein biosynthesis protein MurJ	NA	NA	NA	NA	NA
AZS01222.1|2919765_2920770_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AZS01223.1|2920870_2921134_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZS01224.1|2921251_2922028_-	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
AZS01225.1|2922618_2923569_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01226.1|2925952_2927065_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZS01227.1|2927121_2928072_-|integrase	integrase	integrase	NA	NA	NA	NA
2928073:2928175	attR	CCGGCCGGGCTCCTTGAGTGAACTGGGGGGGTGGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGG	NA	NA	NA	NA
>prophage 25
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	2950451	3002101	4110595	integrase	Staphylococcus_phage(25.0%)	45	2996595:2996654	3012732:3013770
AZS01250.1|2950451_2951315_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01251.1|2951510_2952983_-	magnesium transporter	NA	NA	NA	NA	NA
AZS01252.1|2952993_2953404_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZS01253.1|2953467_2954514_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01254.1|2954620_2955499_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01255.1|2955512_2956709_-	amidohydrolase	NA	NA	NA	NA	NA
AZS01256.1|2956770_2958462_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AZS01257.1|2958458_2959361_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01258.1|2959529_2960426_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZS01259.1|2962703_2964929_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZS01260.1|2965093_2966182_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZS01261.1|2966138_2966792_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AZS01262.1|2966839_2967637_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01263.1|2968216_2969119_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01264.1|2969199_2970348_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZS01265.1|2970404_2971355_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01266.1|2971453_2971759_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZS01267.1|2971787_2972222_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01268.1|2972223_2973468_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01269.1|2973464_2974175_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02398.1|2974189_2975101_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01270.1|2975463_2975868_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01271.1|2975864_2976323_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01272.1|2976329_2977238_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02399.1|2977234_2978101_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS01273.1|2978087_2978915_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZS01274.1|2978925_2980053_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZS01275.1|2982410_2983673_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01276.1|2983679_2984432_+	DNA-binding protein	NA	NA	NA	NA	NA
AZS01277.1|2984483_2984669_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01278.1|2984944_2985409_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01279.1|2985488_2986100_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AZS01280.1|2986244_2988353_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01281.1|2988349_2989252_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01282.1|2989403_2990024_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02400.1|2990127_2990868_+	oxidoreductase	NA	NA	NA	NA	NA
AZS01283.1|2992002_2993127_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01284.1|2993172_2993541_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01285.1|2993782_2994685_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01286.1|2995768_2996311_-	hypothetical protein	NA	NA	NA	NA	NA
2996595:2996654	attL	CTAGCTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACT	NA	NA	NA	NA
AZS01287.1|2996696_2997647_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01288.1|2997643_2998552_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01289.1|2998678_2999515_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZS01290.1|3000027_3001137_+	porin	NA	NA	NA	NA	NA
AZS01291.1|3001198_3002101_-|integrase	integrase	integrase	NA	NA	NA	NA
3012732:3013770	attR	AGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGGGAACTGGCATTCATCATGGCTCCTTCAAACAATGGGATTCGACAGCATGACTCCACTGTAGACCTTGCCATGATTGGAAGGTCAAGCGTCCGCGGCGCGCGGCGCCGTGCGCCCTACGCCAGATGCGTGACGAAATAGATCTTCTTGACGTGGCGGTCCACTTCCCAGCGGCCGGTATAGCCTTCGGGCATGATGAAGGCGTCGCCCGCCTTGACCGCGTGGACCGTGCCGTCCGGGTCCACCAGGCGCGCCTCGCCCTCGATGATGTGGCAGTACTCGATGTAGCCGGTGGTGTTGGACTGGAAGCTGCCGCTGGTGCTCTCCCACACGCCGGACTCGACCTTCCCCTGCCCGCCCTCGAAGGCGGTCACCGTGCGAAACGACGCGTCGCCGGCTATGGGCCGGCTGGGCTTGCCCGCCACCGGGTTGATCATGGGGCCCGTATCGATGCGGACCAGGCGCGATTTGTCGTGTTGCGGCATGGGTTCCCTTTGCAAGTTCACTGGAAGGCCAGCGCCGCCACTGCGGCGCCCGGAATCGGACTATAGCCAATCACGGCTCCGACAGGCGCGGCGCGCCCGCCGCGGGCCTCTATATGCCTAAAGCGTATAAACACCAGCCTAAAATTTCATGGAAAACCCTAGTTTTAGTATGCGAAACTCAGGTCAAACTCCGTTCTGGAAAAAAAAAACTACTTTTCCGGGATTTCGCAGTTTTCATGAGCACGTTATTTCGCCGCGCGCCGCGTACCATCATTGCTGCCCGCGATTGACCTCGCACTCTACCGACCACGACACCATCGGCATGCCCAACCTGAACCTCAGCCTCGACCATACCGGATTGATCGTCTTCAAGCTGGAAGACGCGCGCCAGGCCTTCGAACGCCTGGGCTTCACCCTCACGCCGCGCAGCATGCACGCCGGCGCGCTGACCCCGGGCGGCCCGGTGGTGCCCTGGGGATCGGGCAACCATTGCGCC	NA	NA	NA	NA
>prophage 27
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	3383193	3503342	4110595	tRNA,integrase,transposase	Acinetobacter_phage(18.75%)	104	3395477:3395502	3503343:3503391
AZS01593.1|3383193_3384096_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01594.1|3384500_3385145_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZS01595.1|3385169_3385754_-	Urease accessory protein UreF	NA	NA	NA	NA	NA
AZS01596.1|3385854_3386472_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZS01597.1|3386474_3388190_-	urease subunit alpha	NA	NA	NA	NA	NA
AZS01598.1|3388186_3388495_-	urease subunit beta	NA	NA	NA	NA	NA
AZS02421.1|3388511_3389129_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZS01599.1|3389173_3389476_-	urease subunit gamma	NA	NA	NA	NA	NA
AZS01600.1|3389576_3390431_-	urease accessory protein ureD	NA	NA	NA	NA	NA
AZS01601.1|3391702_3392110_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AZS01602.1|3392479_3393274_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01603.1|3393374_3394610_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZS01604.1|3394678_3395695_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
3395477:3395502	attL	GGCCTGCTGGCGCCGGCCGGCACGCC	NA	NA	NA	NA
AZS01605.1|3395706_3397083_+	hypothetical protein	NA	NA	NA	NA	NA
3395477:3395502	attL	GGCCTGCTGGCGCCGGCCGGCACGCC	NA	NA	NA	NA
AZS01606.1|3397079_3398276_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01607.1|3398272_3399811_-	SpoVR family protein	NA	NA	NA	NA	NA
AZS01608.1|3399807_3401067_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01609.1|3403007_3403910_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01610.1|3404724_3405819_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01611.1|3405811_3407146_-	CoA ligase	NA	NA	NA	NA	NA
AZS01612.1|3407099_3407783_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01613.1|3407808_3408972_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS01614.1|3408968_3409970_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS01615.1|3409969_3410842_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS01616.1|3410838_3411588_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZS01617.1|3411584_3412376_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZS01618.1|3412372_3413512_-	ABC transporter	NA	NA	NA	NA	NA
AZS01619.1|3413787_3414573_+	3-hydroxy-2-methylbutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS01620.1|3414606_3415389_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01621.1|3415392_3415782_+	DNA-binding protein	NA	NA	NA	NA	NA
AZS01622.1|3416921_3417785_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01623.1|3417820_3418909_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01624.1|3418905_3419808_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01625.1|3420209_3423188_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01626.1|3424114_3424993_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZS01627.1|3425028_3425361_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01628.1|3425339_3425978_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01629.1|3425957_3426860_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01630.1|3427170_3427413_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01631.1|3427571_3427892_+	hypothetical protein	NA	A0A1V0S9J5	Catovirus	45.3	2.4e-14
AZS01632.1|3427990_3428941_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01633.1|3428937_3429405_-	ribonuclease H	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZS01634.1|3429447_3430218_-	methyltransferase type 11	NA	NA	NA	NA	NA
AZS01635.1|3430238_3431039_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZS01636.1|3431049_3432459_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZS01637.1|3432553_3433339_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
AZS01638.1|3433578_3434595_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS01639.1|3434702_3435095_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AZS01640.1|3435232_3435913_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02422.1|3435917_3436889_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
3436108:3436133	attR	GGCGTGCCGGCCGGCGCCAGCAGGCC	NA	NA	NA	NA
AZS01641.1|3436984_3437887_-|integrase	integrase	integrase	NA	NA	NA	NA
3436108:3436133	attR	GGCGTGCCGGCCGGCGCCAGCAGGCC	NA	NA	NA	NA
AZS01642.1|3439439_3440141_+	two-component system response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZS01643.1|3440140_3441565_+	ATPase	NA	NA	NA	NA	NA
AZS01644.1|3442634_3443975_-	transmembrane cytochrome oxidase	NA	NA	NA	NA	NA
AZS01645.1|3444090_3445854_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZS01646.1|3445965_3446844_+	septum formation inhibitor	NA	NA	NA	NA	NA
AZS01647.1|3446956_3447772_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZS01648.1|3447775_3448027_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AZS01649.1|3448111_3449128_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS01650.1|3449458_3449680_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AZS02423.1|3452040_3452907_-	multidrug DMT transporter	NA	NA	NA	NA	NA
AZS01651.1|3453455_3454664_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS01652.1|3454743_3456315_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01653.1|3456432_3457368_-	glycosyl transferase	NA	NA	NA	NA	NA
AZS01654.1|3457556_3458501_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZS01655.1|3458569_3458740_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01656.1|3459068_3464786_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZS01657.1|3464791_3465919_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZS01658.1|3465974_3466601_+	aminobenzoate synthetase	NA	NA	NA	NA	NA
AZS01659.1|3466872_3467889_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS01660.1|3467984_3468695_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS02424.1|3468691_3469681_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01661.1|3469776_3471408_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZS01662.1|3471410_3472148_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01663.1|3472303_3473176_-	heme biosynthesis protein HemY	NA	NA	NA	NA	NA
AZS01664.1|3473525_3474665_+	MFS transporter	NA	NA	NA	NA	NA
AZS01665.1|3474661_3475321_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZS01666.1|3475392_3476025_+	pyridoxine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZS01667.1|3476054_3476573_+	flavin reductase	NA	NA	NA	NA	NA
AZS01668.1|3476583_3477693_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZS01669.1|3477739_3478594_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZS01670.1|3478595_3479498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01671.1|3480720_3481671_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01672.1|3481769_3482903_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01673.1|3482939_3483188_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01674.1|3483427_3484417_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01675.1|3484592_3485381_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZS01676.1|3485377_3486409_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZS01677.1|3486427_3486991_-	anthranilate synthase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZS01678.1|3487046_3488567_-	anthranilate synthase	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZS01679.1|3488830_3489535_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZS01680.1|3489542_3490271_-	ribulose phosphate epimerase	NA	NA	NA	NA	NA
AZS01681.1|3490385_3490760_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZS01682.1|3490802_3492092_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01683.1|3492088_3493258_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZS01684.1|3493284_3494094_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AZS01685.1|3494153_3495089_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZS01686.1|3495101_3496052_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01687.1|3496150_3497113_-|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZS01688.1|3497144_3497504_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZS01689.1|3497628_3498531_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZS02425.1|3498532_3500299_-	peptidase M61	NA	NA	NA	NA	NA
AZS01690.1|3500339_3501116_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01691.1|3502439_3503342_-|integrase	integrase	integrase	NA	NA	NA	NA
3503343:3503391	attR	TTCGAGTCGACGTAGGAAGGTCAATCGGGCATGCTTATGGGTGTTCATC	NA	NA	NA	NA
>prophage 28
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	3518328	3562062	4110595	tRNA,holin,integrase	Catovirus(33.33%)	37	3520602:3520622	3565737:3565757
AZS01704.1|3518328_3519279_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01705.1|3519407_3520541_-	peptidase	NA	NA	NA	NA	NA
AZS01706.1|3520584_3521490_-	hydrolase	NA	NA	NA	NA	NA
3520602:3520622	attL	CGGCCAGGCGGGCCAGTTCGG	NA	NA	NA	NA
AZS01707.1|3523189_3524110_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AZS01708.1|3524117_3525095_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS01709.1|3525153_3526113_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZS01710.1|3528162_3528399_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01711.1|3528525_3529389_-	ADP-dependent (S)-NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZS01712.1|3529477_3530299_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01713.1|3530378_3531116_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01714.1|3531112_3532105_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AZS02428.1|3532257_3532881_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01715.1|3532925_3534074_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS01716.1|3536445_3537348_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01717.1|3537688_3538639_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01718.1|3538785_3539688_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01719.1|3539984_3540482_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01720.1|3540524_3542300_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01721.1|3542307_3543174_+	copper resistance protein	NA	NA	NA	NA	NA
AZS01722.1|3543180_3543906_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01723.1|3544075_3544306_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01724.1|3544343_3544565_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01725.1|3545084_3545855_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01726.1|3546168_3546759_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZS01727.1|3546792_3548121_-	amidase	NA	NA	NA	NA	NA
AZS01728.1|3548195_3549341_-	transporter	NA	NA	NA	NA	NA
AZS01729.1|3549452_3550451_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01730.1|3550413_3550848_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZS01731.1|3552364_3553249_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01732.1|3553245_3554451_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AZS01733.1|3554447_3555308_-	endonuclease	NA	NA	NA	NA	NA
AZS01734.1|3555420_3557211_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZS02429.1|3557251_3557896_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AZS01735.1|3557917_3558226_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZS02430.1|3558391_3559678_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01736.1|3559804_3561064_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AZS01737.1|3561111_3562062_-|integrase	integrase	integrase	NA	NA	NA	NA
3565737:3565757	attR	CCGAACTGGCCCGCCTGGCCG	NA	NA	NA	NA
>prophage 29
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	3708573	3751744	4110595	tRNA,integrase	Streptococcus_phage(11.11%)	41	3746583:3746601	3752367:3752385
AZS01858.1|3708573_3709476_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01859.1|3709623_3710526_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01860.1|3710522_3711158_-	lysine transporter LysE	NA	NA	NA	NA	NA
AZS01861.1|3711287_3712187_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01862.1|3712282_3712774_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01863.1|3712820_3713786_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01864.1|3714919_3716161_+	2-aminoadipate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZS01865.1|3716274_3717291_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZS01866.1|3717325_3717802_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01867.1|3717944_3718853_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZS01868.1|3718966_3720079_-	DNA processing protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZS02440.1|3720179_3720665_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZS01869.1|3720801_3722052_+	kynureninase	NA	NA	NA	NA	NA
AZS01870.1|3722153_3722666_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZS01871.1|3722812_3723715_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01872.1|3723780_3724719_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZS01873.1|3724741_3725368_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZS01874.1|3725364_3726021_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZS01875.1|3726017_3726620_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01876.1|3726626_3727214_-	LOG family protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
AZS01877.1|3727394_3727964_+	bacterioferritin	NA	NA	NA	NA	NA
AZS01878.1|3728034_3729354_-	ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZS01879.1|3729460_3729652_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZS01880.1|3729903_3731193_+	glycine/D-amino acid oxidase	NA	NA	NA	NA	NA
AZS01881.1|3731347_3732343_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01882.1|3732427_3733102_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01883.1|3733098_3734001_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS01884.1|3734210_3735452_+	ornithine--oxo-acid aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZS01885.1|3735448_3736393_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZS01886.1|3736559_3737462_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01887.1|3737421_3738351_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01888.1|3738404_3738740_-	alkylhydroperoxidase	NA	NA	NA	NA	NA
AZS01889.1|3738784_3739549_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS01890.1|3739572_3740313_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01891.1|3740320_3741874_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AZS01892.1|3741908_3742886_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01893.1|3743158_3743740_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZS01894.1|3743791_3750925_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3746583:3746601	attL	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
AZS01895.1|3751140_3751272_-	entericidin	NA	NA	NA	NA	NA
AZS02441.1|3751303_3751429_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01896.1|3751537_3751744_-|integrase	integrase	integrase	NA	NA	NA	NA
3752367:3752385	attR	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
>prophage 30
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	3757679	3794355	4110595	integrase	Burkholderia_phage(11.11%)	38	3790316:3790375	3794445:3794593
AZS01903.1|3757679_3758582_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01904.1|3758592_3759234_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01905.1|3759400_3759643_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01906.1|3759789_3760692_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01907.1|3760727_3761195_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZS01908.1|3761428_3761806_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01909.1|3761802_3761985_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01910.1|3761988_3762975_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZS01911.1|3762971_3763619_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZS01912.1|3763676_3764204_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01913.1|3764240_3765425_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZS01914.1|3765435_3765777_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AZS01915.1|3765769_3765889_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01916.1|3765889_3766090_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01917.1|3766086_3767076_-|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZS01918.1|3768562_3770533_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01919.1|3770774_3771173_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01920.1|3771181_3772105_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01921.1|3772610_3773513_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01922.1|3773743_3775435_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZS01923.1|3775483_3775756_-	membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZS01924.1|3775752_3776124_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZS01925.1|3776219_3776354_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZS01926.1|3776759_3778169_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AZS01927.1|3778171_3779281_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AZS01928.1|3779375_3781829_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZS01929.1|3781947_3782739_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01930.1|3782858_3784286_+	amidase	NA	NA	NA	NA	NA
AZS02442.1|3784324_3785296_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS01931.1|3785380_3785584_+	hypothetical protein	NA	NA	NA	NA	NA
AZS01932.1|3785714_3786878_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AZS01933.1|3786965_3787811_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS01934.1|3789415_3790318_+|integrase	integrase	integrase	NA	NA	NA	NA
3790316:3790375	attL	TAGCTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTG	NA	NA	NA	NA
AZS01935.1|3790464_3791367_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS01936.1|3791363_3791708_-	hypothetical protein	NA	NA	NA	NA	NA
AZS01937.1|3791921_3792296_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZS01938.1|3792370_3793429_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZS01939.1|3793452_3794355_-|integrase	integrase	integrase	NA	NA	NA	NA
3794445:3794593	attR	CAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTACCTGCCCAAGCTGGTCAGCGGCGAACACGTGGGCGCGCTGGCCATGAGCGAGCCGGGCGCGGGGTCCGATGTGGTCAGCATGCGCCTGC	NA	NA	NA	NA
>prophage 31
CP014212	Bordetella pertussis strain J358 chromosome, complete genome	4110595	4032766	4086150	4110595	integrase	Planktothrix_phage(40.0%)	45	4032660:4032677	4093603:4093620
4032660:4032677	attL	ATGATCTTCCAGGATCCG	NA	NA	NA	NA
AZS02158.1|4032766_4033717_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02159.1|4033886_4035113_+	ornithine acetyltransferase	NA	NA	NA	NA	NA
AZS02160.1|4035312_4036179_+	AAA family ATPase	NA	NA	NA	NA	NA
AZS02161.1|4036171_4037134_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZS02162.1|4037234_4038185_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02163.1|4038331_4039234_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02164.1|4039380_4040283_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02165.1|4040279_4041773_-	RND transporter	NA	NA	NA	NA	NA
AZS02166.1|4041769_4044877_-	multidrug transporter	NA	NA	NA	NA	NA
AZS02167.1|4044873_4047942_-	multidrug transporter	NA	NA	NA	NA	NA
AZS02168.1|4047938_4049189_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZS02456.1|4049369_4050122_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZS02457.1|4050163_4050808_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZS02169.1|4050816_4051656_-	peptidase A24	NA	NA	NA	NA	NA
AZS02170.1|4051896_4052640_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02171.1|4052722_4053070_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZS02172.1|4053167_4054010_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZS02173.1|4054054_4054942_-	segregation and condensation protein A	NA	NA	NA	NA	NA
AZS02174.1|4054968_4055157_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02175.1|4055254_4056712_+	MFS transporter	NA	NA	NA	NA	NA
AZS02176.1|4056698_4058225_+	glycerol kinase	NA	NA	NA	NA	NA
AZS02177.1|4058243_4058711_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02178.1|4058710_4059733_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02179.1|4059853_4060594_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZS02180.1|4060648_4061749_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS02181.1|4061750_4062941_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS02182.1|4063060_4064077_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZS02183.1|4064395_4065067_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZS02184.1|4065063_4065972_+	permease	NA	NA	NA	NA	NA
AZS02185.1|4066183_4066831_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AZS02458.1|4070691_4071759_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZS02186.1|4071769_4072579_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS02187.1|4072668_4073442_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZS02188.1|4073672_4074575_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02189.1|4074586_4075486_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02190.1|4075475_4076630_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AZS02191.1|4076669_4078082_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02192.1|4078104_4079073_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02193.1|4079074_4079899_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS02194.1|4079895_4080657_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AZS02195.1|4080737_4081424_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02196.1|4081621_4082605_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZS02197.1|4082601_4083381_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS02459.1|4083468_4084701_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AZS02198.1|4085247_4086150_-|integrase	integrase	integrase	NA	NA	NA	NA
4093603:4093620	attR	CGGATCCTGGAAGATCAT	NA	NA	NA	NA
