The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	1643512	1659963	4808419	tail,holin,transposase	Salmonella_phage(30.77%)	15	NA	NA
AZR50138.1|1643512_1644304_+|tail	phage tail protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
AZR50139.1|1644600_1644804_+|tail	phage tail protein	tail	NA	NA	NA	NA
AZR50140.1|1645941_1646046_-	copper resistance protein	NA	NA	NA	NA	NA
AZR50141.1|1646022_1646700_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
AZR50142.1|1646699_1647047_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AZR50143.1|1647066_1648638_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.7	9.9e-170
AZR53145.1|1650374_1651364_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
AZR50144.1|1651378_1651747_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
AZR50145.1|1651775_1653107_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
AZR50146.1|1653403_1653733_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
AZR50147.1|1654325_1655567_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
AZR50148.1|1655569_1656097_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
AZR50149.1|1656474_1656918_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
AZR50150.1|1659141_1659432_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
AZR50151.1|1659459_1659963_+	DNA polymerase V	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
>prophage 2
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	1732726	1741897	4808419	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AZR50221.1|1732726_1733674_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
AZR50222.1|1733657_1734389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZR50223.1|1734369_1734477_-	hypothetical protein	NA	NA	NA	NA	NA
AZR50224.1|1734536_1735268_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AZR50225.1|1735490_1737176_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
AZR50226.1|1737172_1737892_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZR50227.1|1737938_1738406_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AZR50228.1|1738462_1738993_-	hypothetical protein	NA	NA	NA	NA	NA
AZR50229.1|1739164_1739623_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AZR50230.1|1739863_1741897_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	1810205	1820711	4808419		Enterobacteria_phage(37.5%)	10	NA	NA
AZR50285.1|1810205_1811609_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
AZR50286.1|1811786_1812680_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AZR50287.1|1813056_1814142_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
AZR50288.1|1814141_1815041_+	NAD(P)-dependent oxidoreductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
AZR53148.1|1815088_1815967_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
AZR50289.1|1815967_1816519_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
AZR50290.1|1816524_1817517_+	protein RfbI	NA	NA	NA	NA	NA
AZR50291.1|1817513_1818287_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AZR50292.1|1818291_1819371_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
AZR50293.1|1819397_1820711_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	1906704	1917307	4808419		Morganella_phage(25.0%)	13	NA	NA
AZR50376.1|1906704_1907178_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
AZR50377.1|1907825_1908116_-	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
AZR50378.1|1908487_1909285_-	protein MtfA	NA	NA	NA	NA	NA
AZR50379.1|1909545_1909788_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50380.1|1909765_1909927_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50381.1|1910053_1910473_+	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AZR50382.1|1910475_1911744_+	protein UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
AZR50383.1|1912198_1912411_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AZR53153.1|1912421_1912610_+	cold-shock protein	NA	NA	NA	NA	NA
AZR50384.1|1912870_1914067_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
AZR50385.1|1914716_1915016_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50386.1|1915107_1915803_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
AZR50387.1|1915876_1917307_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	2021350	2051575	4808419	tail,protease,integrase	Escherichia_phage(18.18%)	40	2025212:2025226	2043698:2043712
AZR50497.1|2021350_2021581_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AZR50498.1|2021718_2022093_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AZR50499.1|2022093_2022969_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50500.1|2022985_2023339_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AZR53158.1|2023396_2023516_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53157.1|2023712_2024567_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
AZR53159.1|2024626_2025121_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
2025212:2025226	attL	CAGACATTTGCCCGC	NA	NA	NA	NA
AZR50501.1|2025310_2025541_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
AZR50502.1|2025594_2026128_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
AZR50503.1|2026384_2026552_-	lytic enzyme	NA	NA	NA	NA	NA
AZR50504.1|2026616_2026805_-	hypothetical protein	NA	NA	NA	NA	NA
AZR50505.1|2027277_2028159_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
AZR50506.1|2028255_2028456_-	phage virulence factor	NA	NA	NA	NA	NA
AZR50507.1|2028646_2028763_-|tail	phage tail protein	tail	NA	NA	NA	NA
AZR50508.1|2029025_2029151_+	arsenic transporter	NA	NA	NA	NA	NA
AZR50509.1|2029279_2029546_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50510.1|2030298_2030913_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZR50511.1|2030922_2031081_-	hypothetical protein	NA	NA	NA	NA	NA
AZR50512.1|2031213_2032128_-	protein PagO	NA	NA	NA	NA	NA
AZR53160.1|2032745_2032946_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50513.1|2033236_2033494_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50514.1|2033431_2033800_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
AZR50515.1|2035263_2035404_-	hypothetical protein	NA	NA	NA	NA	NA
AZR50516.1|2035569_2035839_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
AZR50517.1|2035885_2036080_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50518.1|2036208_2036628_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZR50519.1|2037015_2037492_-	hypothetical protein	NA	NA	NA	NA	NA
AZR50520.1|2037821_2038217_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	9.2e-16
AZR50521.1|2038899_2039622_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AZR50522.1|2039906_2040071_+	hypothetical protein	NA	NA	NA	NA	NA
AZR50523.1|2040294_2040945_+	serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
AZR50524.1|2040963_2041155_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AZR50525.1|2041265_2041505_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
AZR53161.1|2041619_2043059_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AZR50526.1|2043136_2045776_-	MCE family protein	NA	NA	NA	NA	NA
2043698:2043712	attR	GCGGGCAAATGTCTG	NA	NA	NA	NA
AZR50527.1|2045738_2047022_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AZR50528.1|2047063_2047648_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AZR50529.1|2047745_2048432_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
AZR50530.1|2048451_2050500_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
AZR50531.1|2050693_2051575_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 6
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	2818643	2909560	4808419	protease,holin,tail,tRNA,lysis,terminase	Salmonella_phage(59.57%)	95	NA	NA
AZR51291.1|2818643_2819324_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
AZR51292.1|2819669_2819879_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51293.1|2819944_2820604_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
AZR51294.1|2820690_2821020_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AZR51295.1|2821016_2821298_-	acylphosphatase	NA	NA	NA	NA	NA
AZR51296.1|2821346_2822126_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZR51297.1|2822151_2822700_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AZR51298.1|2822914_2824126_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
AZR51299.1|2824183_2824501_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
AZR51300.1|2824545_2824962_-	CoA-binding protein	NA	NA	NA	NA	NA
AZR51301.1|2825132_2825795_+	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
AZR51302.1|2825889_2826348_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZR51303.1|2826383_2828438_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
AZR51304.1|2828561_2829008_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AZR51305.1|2829026_2831180_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AZR51306.1|2831166_2831772_-	DNA transformation protein	NA	NA	NA	NA	NA
AZR51307.1|2831988_2832498_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AZR53196.1|2832854_2833907_+	outer membrane protein A	NA	NA	NA	NA	NA
AZR51308.1|2833978_2834431_-	macrodomain Ter protein	NA	NA	NA	NA	NA
AZR51309.1|2834616_2836377_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AZR51310.1|2836445_2836964_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AZR51311.1|2837063_2837231_-	ribosome modulation factor	NA	NA	NA	NA	NA
AZR51312.1|2837486_2838050_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51313.1|2838046_2839687_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
AZR51314.1|2839691_2840945_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AZR51315.1|2840959_2842867_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
AZR51316.1|2842879_2844988_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
AZR51317.1|2845086_2846196_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZR51318.1|2846192_2846735_-	cell division protein ZapC	NA	NA	NA	NA	NA
AZR51319.1|2846900_2847911_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZR51320.1|2848118_2850731_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
AZR51321.1|2851157_2851349_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
AZR51322.1|2851619_2852306_+	virulence protein	NA	NA	NA	NA	NA
AZR51323.1|2852290_2852590_+	hypothetical protein	NA	NA	NA	NA	NA
AZR51324.1|2852658_2853285_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
AZR51325.1|2853932_2854901_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.4	3.0e-193
AZR51326.1|2855376_2855958_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
AZR51327.1|2855957_2858396_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.8	7.5e-92
AZR51328.1|2858449_2858692_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51329.1|2858730_2862081_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
AZR51330.1|2862152_2862857_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
AZR51331.1|2862754_2863492_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
AZR51332.1|2863501_2864197_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
AZR51333.1|2864286_2864820_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
AZR51334.1|2864936_2865434_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
AZR51335.1|2865533_2865866_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
AZR51336.1|2866986_2867532_-|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
AZR51337.1|2867545_2867761_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53197.1|2868000_2868447_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	90.4	1.2e-64
AZR51338.1|2868464_2868917_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	7.9e-80
AZR53198.1|2868900_2869230_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.9e-55
AZR51339.1|2869505_2870192_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
AZR51340.1|2870552_2871002_+	hypothetical protein	NA	NA	NA	NA	NA
AZR51341.1|2871137_2871263_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51342.1|2871457_2872147_-	antiterminator	NA	I6PDF8	Cronobacter_phage	50.2	2.4e-59
AZR51343.1|2872143_2872284_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
AZR51344.1|2872280_2872892_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.0	2.7e-91
AZR51345.1|2872894_2873101_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.0e-34
AZR51346.1|2873100_2873703_-	DUF1367 domain-containing protein	NA	A0A0M4QX23	Salmonella_phage	99.0	7.5e-110
AZR51347.1|2873787_2874009_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51348.1|2874118_2874352_-	DNA damage-inducible protein I	NA	A0A0M4REN2	Salmonella_phage	87.0	1.2e-31
AZR51349.1|2874943_2875540_+	hypothetical protein	NA	NA	NA	NA	NA
AZR51350.1|2875551_2876529_+	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
AZR53199.1|2876583_2876841_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51351.1|2876840_2877485_-	hypothetical protein	NA	H6WRY2	Salmonella_phage	40.7	1.8e-29
AZR51352.1|2877488_2877797_-	hypothetical protein	NA	A0A1P8DTP0	Salmonella_phage	69.3	1.8e-30
AZR51353.1|2877800_2878259_-	hypothetical protein	NA	S4TNP2	Salmonella_phage	77.4	7.1e-44
AZR51354.1|2878255_2878603_-	DUF977 domain-containing protein	NA	H6WRX9	Salmonella_phage	90.4	1.8e-52
AZR51355.1|2878613_2879363_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
AZR51356.1|2879365_2880349_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.3	2.1e-162
AZR51357.1|2880433_2880754_-	hypothetical protein	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
AZR51358.1|2880788_2881016_-	transcriptional regulator	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
AZR51359.1|2881121_2881556_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
AZR51360.1|2881852_2881984_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	97.7	1.2e-17
AZR51361.1|2882032_2882383_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	94.0	3.5e-59
AZR51362.1|2882509_2885710_+	DNA breaking-rejoining protein	NA	S4TNL0	Salmonella_phage	78.8	0.0e+00
AZR51363.1|2885672_2886830_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
AZR51364.1|2886872_2887112_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AZR51365.1|2887152_2887401_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AZR51366.1|2887445_2888738_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	4.5e-253
AZR51367.1|2888932_2890135_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AZR51368.1|2890212_2891649_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZR51369.1|2891893_2893108_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA	NA
AZR51370.1|2893194_2893428_+	hypothetical protein	NA	NA	NA	NA	NA
AZR51371.1|2893424_2893886_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZR51372.1|2894086_2895487_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
AZR51373.1|2896093_2897185_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
AZR51374.1|2897369_2898560_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AZR51375.1|2898621_2899269_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZR51376.1|2899296_2899845_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
AZR51377.1|2900104_2901946_-	L,D-transpeptidase	NA	NA	NA	NA	NA
AZR51378.1|2902290_2906757_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
AZR51379.1|2906756_2907461_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
AZR51380.1|2907441_2908764_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
AZR51381.1|2908756_2909560_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
>prophage 7
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	2959623	2968355	4808419	transposase,protease	Enterobacteria_phage(16.67%)	8	NA	NA
AZR51421.1|2959623_2960878_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
AZR51422.1|2961341_2961800_-|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
AZR51423.1|2961756_2961939_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51424.1|2961991_2964268_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
AZR51425.1|2964298_2964619_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AZR51426.1|2964942_2965164_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AZR51427.1|2965118_2965313_-	hypothetical protein	NA	NA	NA	NA	NA
AZR51428.1|2967236_2968355_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 8
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	3580976	3626629	4808419	protease,tail,lysis,integrase,transposase,portal,terminase,coat	Salmonella_phage(42.65%)	69	3567660:3567676	3635844:3635860
3567660:3567676	attL	ACGCGAATTTCAATATC	NA	NA	NA	NA
AZR51980.1|3580976_3581267_-	phage antirepressor protein	NA	H6WRU9	Salmonella_phage	43.8	4.7e-09
AZR51981.1|3581339_3581825_+	hypothetical protein	NA	NA	NA	NA	NA
AZR51982.1|3581915_3583913_-	DNA transfer protein	NA	Q716G2	Shigella_phage	94.9	0.0e+00
AZR51983.1|3583912_3585217_-	acyltransferase	NA	E7C9U5	Salmonella_phage	95.4	1.6e-210
AZR51984.1|3585227_3585917_-	DNA transfer protein	NA	E7C9U4	Salmonella_phage	99.6	1.2e-108
AZR51985.1|3585919_3586375_-	hypothetical protein	NA	B8K1I4	Salmonella_phage	100.0	1.4e-87
AZR51986.1|3586374_3587076_-|tail	phage tail protein	tail	A0A0M4QWW6	Salmonella_phage	97.4	4.8e-76
AZR51987.1|3587079_3588498_-	hypothetical protein	NA	E7C9U1	Salmonella_phage	99.4	2.1e-275
AZR51988.1|3588457_3588958_-	hypothetical protein	NA	Q76H19	Enterobacteria_phage	100.0	4.2e-90
AZR51989.1|3588941_3589502_-	hypothetical protein	NA	C6ZR11	Salmonella_phage	100.0	9.8e-104
AZR51990.1|3589542_3590835_-|coat	coat protein	coat	C6ZR10	Salmonella_phage	99.3	3.2e-243
AZR51991.1|3590834_3591746_-	scaffolding protein	NA	A0A192Y6T4	Salmonella_phage	99.7	2.4e-160
AZR51992.1|3591759_3593937_-|portal	portal protein	portal	Q76H23	Enterobacteria_phage	100.0	0.0e+00
AZR51993.1|3593936_3595436_-|terminase	terminase	terminase	Q76H24	Enterobacteria_phage	100.0	2.8e-307
AZR51994.1|3595413_3595902_-	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
AZR51995.1|3595905_3596310_-	Decoration protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
AZR51996.1|3596309_3596699_-	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
AZR51997.1|3596702_3596945_-	DUF2560 domain-containing protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
AZR51998.1|3597167_3597698_-	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	100.0	1.3e-94
AZR51999.1|3597651_3597876_-	hypothetical protein	NA	A0A1V0E5I0	Salmonella_phage	88.7	3.6e-25
AZR52000.1|3597910_3598378_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	100.0	1.7e-77
AZR52001.1|3598648_3600262_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	62.6	5.0e-177
AZR52002.1|3600292_3600643_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	63.8	4.7e-40
AZR52003.1|3600639_3601059_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	95.9	2.2e-47
AZR52004.1|3601383_3601587_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
AZR52005.1|3601671_3601905_-	hypothetical protein	NA	M1E3N9	Enterobacteria_phage	87.0	1.1e-21
AZR52006.1|3602017_3602791_-	antitermination protein	NA	Q76H66	Enterobacteria_phage	100.0	8.1e-133
AZR52007.1|3602787_3602967_-	hypothetical protein	NA	Q76H67	Enterobacteria_phage	100.0	1.9e-24
AZR52008.1|3602947_3603151_-	protein ninH	NA	I6RSQ6	Salmonella_phage	100.0	7.2e-33
AZR52009.1|3603147_3603372_-	protein ninY	NA	Q76H69	Enterobacteria_phage	100.0	6.3e-38
AZR52010.1|3603368_3603974_-	recombination protein NinG	NA	E7C9S3	Salmonella_phage	100.0	7.1e-100
AZR52011.1|3603966_3604143_-	protein ninF	NA	I6S668	Salmonella_phage	98.3	4.3e-26
AZR52012.1|3604135_3604474_-	DUF2591 domain-containing protein	NA	A0A075B8G3	Enterobacteria_phage	100.0	3.3e-62
AZR52013.1|3604470_3604647_-	NinE family protein	NA	I6RSQ2	Salmonella_phage	100.0	4.6e-28
AZR52014.1|3604613_3604787_-	protein ninD	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
AZR52015.1|3604783_3605239_-	recombination protein NinB	NA	A8CGE3	Salmonella_phage	99.3	1.5e-78
AZR52016.1|3605294_3606671_-	replicative DNA helicase	NA	A0A075B8G2	Enterobacteria_phage	100.0	3.3e-254
AZR52017.1|3606667_3607483_-	DNA replication protein	NA	A0A075B8J2	Enterobacteria_phage	100.0	9.4e-148
AZR52018.1|3607475_3607622_-	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
AZR52019.1|3607656_3607935_-	hypothetical protein	NA	Q5G8T2	Enterobacteria_phage	100.0	2.5e-44
AZR52020.1|3608070_3608298_-	DNA-binding protein	NA	G9L677	Escherichia_phage	89.3	2.1e-33
AZR52021.1|3608375_3609086_+	phage repressor protein C	NA	G9L676	Escherichia_phage	87.7	4.0e-118
AZR52022.1|3609171_3610095_+	hypothetical protein	NA	A0A1R3Y6Z6	Salmonella_virus	99.7	4.3e-181
AZR52023.1|3610130_3610334_-	hypothetical protein	NA	A0A2H5BFH9	Salmonella_phage	98.5	7.7e-27
AZR53230.1|3610701_3611064_+	antitermination protein	NA	C6ZR44	Salmonella_phage	88.3	1.1e-52
AZR52024.1|3611080_3611524_+	hypothetical protein	NA	E5AGE5	Erwinia_phage	62.6	3.0e-47
AZR52025.1|3612146_3612425_+	hypothetical protein	NA	C6ZR42	Salmonella_phage	98.9	2.3e-45
AZR52026.1|3612700_3613015_+	superinfection exclusion protein	NA	Q76H37	Enterobacteria_phage	100.0	1.5e-56
AZR52027.1|3613099_3613258_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.4e-23
AZR52028.1|3613238_3613427_+	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
AZR52029.1|3613556_3614264_+	recombinase	NA	Q76H40	Enterobacteria_phage	100.0	3.1e-139
AZR52030.1|3614263_3614548_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
AZR52031.1|3614594_3614888_+	RecBCD nuclease inhibitor	NA	Q76H42	Enterobacteria_phage	93.8	4.8e-46
AZR52032.1|3614898_3615069_+	DUF2737 domain-containing protein	NA	Q76H43	Enterobacteria_phage	100.0	1.6e-25
AZR52033.1|3615065_3615656_+	Eae-like protein	NA	E7C9P6	Salmonella_phage	73.9	1.7e-74
AZR52034.1|3615822_3616473_+	hypothetical protein	NA	A0A0M5M1J9	Salmonella_phage	68.4	4.5e-52
AZR52035.1|3616474_3616693_+	sugar acetyltransferase inhibitor	NA	C6ZR28	Salmonella_phage	97.2	7.0e-34
AZR52036.1|3616696_3617089_+	hypothetical protein	NA	A0A1V0E5L6	Salmonella_phage	59.5	1.0e-38
AZR52037.1|3617175_3617853_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
AZR52038.1|3617852_3618200_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AZR52039.1|3618219_3619791_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.7	1.3e-169
AZR52040.1|3619828_3620353_+	DUF551 domain-containing protein	NA	A0A220NQT9	Salmonella_phage	97.0	8.6e-94
AZR52041.1|3620345_3620630_+	ASCH domain-containing protein	NA	A0A2D1GLL3	Escherichia_phage	97.9	1.7e-48
AZR52042.1|3620700_3621330_+	Eac protein	NA	A0A220NQT7	Salmonella_phage	94.3	4.0e-114
AZR52043.1|3621332_3621683_+	DNA-binding protein	NA	Q76H29	Enterobacteria_phage	100.0	3.7e-61
AZR53231.1|3622054_3622723_+|integrase	site-specific integrase	integrase	A0A2H5BFK7	Salmonella_phage	100.0	8.0e-129
AZR52044.1|3622928_3624179_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
AZR52045.1|3624190_3625294_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
AZR52046.1|3625576_3626629_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
3635844:3635860	attR	ACGCGAATTTCAATATC	NA	NA	NA	NA
>prophage 9
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	4808419	4384774	4431818	4808419	tail,tRNA,plate	Burkholderia_phage(40.91%)	50	NA	NA
AZR52701.1|4384774_4385773_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZR52702.1|4385860_4387171_-	conjugal transfer protein	NA	NA	NA	NA	NA
AZR52703.1|4387417_4387933_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
AZR52704.1|4388031_4388241_-	CsbD family protein	NA	NA	NA	NA	NA
AZR53267.1|4388262_4388376_-	hypothetical protein	NA	NA	NA	NA	NA
AZR52705.1|4388372_4389698_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AZR52706.1|4389876_4390485_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
AZR52707.1|4390593_4390962_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZR52708.1|4391132_4393553_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
AZR52709.1|4393651_4394524_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AZR52710.1|4394537_4395035_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZR52711.1|4395215_4396133_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AZR52712.1|4396296_4397655_-	maltoporin	NA	NA	NA	NA	NA
AZR52713.1|4397743_4398853_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
AZR52714.1|4399214_4400405_+	maltose-binding periplasmic protein	NA	NA	NA	NA	NA
AZR52715.1|4400536_4402081_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
AZR52716.1|4402095_4402986_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AZR52717.1|4403151_4403562_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
AZR52718.1|4403704_4405801_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AZR52719.1|4405800_4406538_-	hypothetical protein	NA	NA	NA	NA	NA
AZR52720.1|4406534_4407173_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
AZR52721.1|4407236_4407479_-	outer membrane protein	NA	NA	NA	NA	NA
AZR52722.1|4407922_4409572_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZR52723.1|4409916_4411266_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
AZR52724.1|4411398_4411746_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
AZR52725.1|4412321_4412609_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
AZR52726.1|4412611_4413217_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
AZR52727.1|4413229_4413544_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AZR52728.1|4413703_4414159_+	hypothetical protein	NA	NA	NA	NA	NA
AZR52729.1|4414155_4414353_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AZR52730.1|4414342_4415770_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	3.1e-194
AZR52731.1|4415769_4416294_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AZR52732.1|4416345_4416663_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AZR52733.1|4416622_4416751_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AZR52734.1|4416847_4419202_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
AZR52735.1|4419201_4420155_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
AZR52736.1|4420154_4420364_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AZR52737.1|4420351_4421395_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
AZR52738.1|4421404_4422127_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
AZR52739.1|4422454_4422817_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
AZR52740.1|4422813_4423743_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
AZR52741.1|4423742_4425290_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
AZR52742.1|4425453_4425813_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AZR52743.1|4425803_4426919_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
AZR52744.1|4426911_4427544_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
AZR52745.1|4427546_4429292_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
AZR52746.1|4429296_4429902_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
AZR52747.1|4429898_4430354_+	hypothetical protein	NA	NA	NA	NA	NA
AZR52748.1|4430602_4430893_+	hypothetical protein	NA	NA	NA	NA	NA
AZR52749.1|4431089_4431818_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
>prophage 1
CP028315	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-1, complete sequence	98989	10948	57627	98989	integrase,transposase	Escherichia_phage(20.0%)	60	16514:16528	26832:26846
AZR53296.1|10948_12211_+|transposase	IS1380 family transposase ISEc9	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
AZR53297.1|12534_13680_+	class C beta-lactamase CMY-2	NA	NA	NA	NA	NA
AZR53298.1|13773_14307_+	hypothetical protein	NA	A0A1W6JNX6	Morganella_phage	54.1	6.1e-47
AZR53299.1|14303_14621_-	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA	NA
AZR53300.1|15421_17302_+	colicin 1B	NA	NA	NA	NA	NA
16514:16528	attL	ATTTATAATGCTGAA	NA	NA	NA	NA
AZR53301.1|17319_17667_-	colicin 1B immunity protein	NA	NA	NA	NA	NA
AZR53302.1|17785_18133_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53303.1|18150_18741_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53304.1|18740_18995_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53305.1|19346_20348_+	DUF4238 domain-containing protein	NA	NA	NA	NA	NA
AZR53306.1|20523_20868_-	abortive infection protein	NA	NA	NA	NA	NA
AZR53307.1|21366_21621_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53308.1|21665_22592_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53399.1|22869_23148_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53309.1|23149_23368_+	antitoxin CcdA	NA	NA	NA	NA	NA
AZR53310.1|23369_23675_+	toxin CcdB	NA	NA	NA	NA	NA
AZR53311.1|23675_24482_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	94.7	5.4e-55
AZR53312.1|24661_25306_+	ParA family protein	NA	NA	NA	NA	NA
AZR53313.1|25392_25701_+	molecular chaperone GroEL	NA	NA	NA	NA	NA
AZR53314.1|26114_27095_+	recombinase	NA	A0A0A7NPX4	Enterobacteria_phage	51.4	1.7e-79
26832:26846	attR	ATTTATAATGCTGAA	NA	NA	NA	NA
AZR53315.1|27087_27504_+	recombinase	NA	NA	NA	NA	NA
AZR53316.1|27505_28780_-	protein ImpB	NA	F1C5A5	Cronobacter_phage	60.4	4.4e-144
AZR53317.1|28779_29217_-	peptidase	NA	A0A1W6JNS2	Morganella_phage	48.4	8.3e-26
AZR53318.1|29213_29462_-	protein ImpC	NA	Q2A098	Sodalis_phage	48.0	1.9e-14
AZR53400.1|29572_29842_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53319.1|29810_30782_+	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
AZR53320.1|31166_31850_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	37.4	1.0e-30
AZR53321.1|31850_32072_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53322.1|32083_32518_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AZR53323.1|33211_33784_+	DUF1472 domain-containing protein	NA	NA	NA	NA	NA
AZR53324.1|33756_34182_+	antirestriction protein	NA	NA	NA	NA	NA
AZR53325.1|34228_34651_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AZR53326.1|34647_34839_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53327.1|35405_35612_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53328.1|35608_36136_+	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	74.4	9.3e-48
AZR53329.1|36187_36427_+	DUF905 domain-containing protein	NA	NA	NA	NA	NA
AZR53330.1|36395_38444_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	28.9	4.9e-20
AZR53331.1|38498_38933_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
AZR53332.1|38929_39649_+	plasmid SOS inhibition protein A	NA	NA	NA	NA	NA
AZR53333.1|39778_40954_+|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	81.6	7.1e-173
AZR53334.1|41010_41901_+	DUF1472 domain-containing protein	NA	G9FHQ1	Rhodococcus_virus	27.3	4.3e-05
AZR53335.1|42040_42340_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53336.1|42361_42607_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53337.1|42629_43064_+	post-segregation killing protein PndC	NA	NA	NA	NA	NA
AZR53338.1|43157_43424_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53339.1|43488_44391_+|transposase	transposase	transposase	Q2A0A7	Sodalis_phage	53.4	5.8e-66
AZR53340.1|44390_44672_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53341.1|44702_44954_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZR53342.1|45194_45410_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53343.1|45534_46383_+	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
AZR53344.1|46468_46804_-	molybdopterin-guanine dinucleotide biosynthesis protein MobC	NA	NA	NA	NA	NA
AZR53345.1|47037_47370_+	nikA protein	NA	NA	NA	NA	NA
AZR53346.1|47380_50080_+	relaxase NikB	NA	NA	NA	NA	NA
AZR53347.1|50116_52408_-	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
AZR53348.1|52400_53471_-	DsbC family protein	NA	NA	NA	NA	NA
AZR53349.1|53489_54698_-	conjugal transfer protein TrbA	NA	NA	NA	NA	NA
AZR53401.1|54989_55142_+	Hok/Gef family protein	NA	NA	NA	NA	NA
AZR53350.1|55213_55465_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53351.1|55825_56608_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	100.0	2.0e-139
AZR53352.1|56604_57627_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	1.2e-200
>prophage 1
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	0	3891	187594	transposase	Lactococcus_phage(33.33%)	6	NA	NA
AZR53403.1|409_1195_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	26.4	1.0e-10
AZR53404.1|1368_1680_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53405.1|1986_2802_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
AZR53406.1|2888_3191_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZR53407.1|3084_3336_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53408.1|3753_3891_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	97.8	1.6e-20
>prophage 2
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	10755	12423	187594		Erysipelothrix_phage(100.0%)	1	NA	NA
AZR53415.1|10755_12423_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.2	3.6e-37
>prophage 3
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	15488	22916	187594		Brevibacillus_phage(25.0%)	10	NA	NA
AZR53587.1|15488_17393_+	AAA family ATPase	NA	A0A0K2FLP8	Brevibacillus_phage	26.1	1.8e-40
AZR53420.1|17668_17875_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53421.1|17878_18667_+	hypothetical protein	NA	I6PD67	Cronobacter_phage	32.0	8.5e-21
AZR53422.1|19253_19685_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53423.1|19698_20946_-	site-specific DNA-methyltransferase	NA	H8ZMF1	Synechococcus_phage	20.9	1.2e-05
AZR53424.1|20935_21298_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53425.1|21300_21543_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53426.1|21542_21794_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53427.1|21780_21978_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53428.1|21977_22916_-	chromosome partitioning protein ParB	NA	A0A2P9HXK7	Yersinia_phage	50.2	1.2e-69
>prophage 4
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	27376	33903	187594	transposase	Stx2-converting_phage(40.0%)	8	NA	NA
AZR53437.1|27376_28840_-	ATPase	NA	U5XGM6	Phormidium_phage	38.2	2.4e-45
AZR53438.1|28913_29846_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53439.1|30040_30304_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53440.1|30407_30629_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53441.1|30645_31065_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	95.9	2.2e-47
AZR53442.1|31061_31412_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	63.8	4.7e-40
AZR53443.1|31442_33056_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	62.6	5.0e-177
AZR53444.1|33441_33903_-	DUF1643 domain-containing protein	NA	B5WZV8	Pseudomonas_phage	60.5	1.5e-46
>prophage 5
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	37546	43401	187594		Sodalis_phage(25.0%)	11	NA	NA
AZR53453.1|37546_37819_-	HU family DNA-binding protein	NA	A3E2K9	Sodalis_phage	60.7	1.9e-20
AZR53454.1|37876_38404_-	nuclease	NA	O64020	Bacillus_phage	37.0	1.3e-09
AZR53455.1|38420_38609_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53456.1|38634_39492_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53457.1|39478_39709_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53458.1|39708_40227_-	nitrite reductase	NA	NA	NA	NA	NA
AZR53459.1|40223_40670_-	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AZR53460.1|40669_41029_-	hypothetical protein	NA	A0A076G835	Escherichia_phage	49.4	5.6e-20
AZR53461.1|41085_41514_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53462.1|41547_42408_-	protein-disulfide isomerase	NA	NA	NA	NA	NA
AZR53463.1|42423_43401_-	S49 family peptidase	NA	Q9JMP1	Wolbachia_phage	31.5	7.1e-17
>prophage 6
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	47042	48158	187594		unidentified_phage(100.0%)	1	NA	NA
AZR53468.1|47042_48158_+	phosphohydrolase	NA	H7BVI4	unidentified_phage	29.1	2.2e-46
>prophage 7
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	52076	55823	187594		Bacillus_phage(50.0%)	7	NA	NA
AZR53473.1|52076_53060_+	plasmid stability protein StbA	NA	A7KUY1	Bacillus_phage	24.4	2.1e-08
AZR53474.1|53076_53370_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53475.1|53371_53791_+	DNA-binding protein	NA	NA	NA	NA	NA
AZR53593.1|53850_54402_-	regulator	NA	NA	NA	NA	NA
AZR53476.1|54398_55007_-	transcriptional regulator	NA	NA	NA	NA	NA
AZR53477.1|55017_55551_-	transglycosylase	NA	NA	NA	NA	NA
AZR53478.1|55550_55823_-	nucleotide excision repair protein	NA	A0A2H4J3B6	uncultured_Caudovirales_phage	41.0	1.3e-08
>prophage 8
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	63151	64663	187594		Pseudoalteromonas_phage(100.0%)	1	NA	NA
AZR53483.1|63151_64663_-	ATP-dependent helicase	NA	A0A2D1GN12	Pseudoalteromonas_phage	30.7	3.6e-44
>prophage 9
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	67832	135103	187594	integrase,transposase	Stx2-converting_phage(17.65%)	43	56553:56569	84335:84351
56553:56569	attL	CAATATTCTTCTGCTGG	NA	NA	NA	NA
AZR53488.1|67832_68702_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	35.1	3.5e-23
AZR53489.1|68706_69717_-|integrase	integrase	integrase	A0A0K0N6I5	Gordonia_phage	31.9	3.1e-07
AZR53490.1|69719_70256_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53491.1|70248_70536_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53492.1|70554_70875_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53493.1|71224_71599_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53494.1|71770_72631_-	alpha/beta hydrolase	NA	A2RQC8	Archaeal_BJ1_virus	21.8	5.9e-07
AZR53495.1|72715_74203_-	PhoPQ-regulated protein	NA	NA	NA	NA	NA
AZR53496.1|74437_74737_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53497.1|75394_76726_-	yersiniabactin biosynthesis salicylate synthase YbtS	NA	NA	NA	NA	NA
AZR53498.1|76753_78034_-	yersiniabactin-associated zinc MFS transporter YbtX	NA	NA	NA	NA	NA
AZR53499.1|78026_79829_-	yersiniabactin ABC transporter ATP-binding/permease protein YbtQ	NA	W8CYL7	Bacillus_phage	26.1	2.7e-22
AZR53500.1|79815_81618_-	yersiniabactin ABC transporter ATP-binding/permease protein YbtP	NA	W8CYL7	Bacillus_phage	28.0	1.7e-32
AZR53501.1|81738_81987_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53502.1|81985_82945_+	yersiniabactin transcriptional regulator YbtA	NA	NA	NA	NA	NA
AZR53503.1|83135_89243_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	28.2	3.4e-40
84335:84351	attR	CAATATTCTTCTGCTGG	NA	NA	NA	NA
AZR53504.1|89330_98828_+	yersiniabactin polyketide synthase HMWP1	NA	D0R7J2	Paenibacillus_phage	36.8	1.6e-49
AZR53505.1|98824_99925_+	yersiniabactin biosynthesis oxidoreductase YbtU	NA	NA	NA	NA	NA
AZR53506.1|99921_100725_+	yersiniabactin biosynthesis thioesterase YbtT	NA	NA	NA	NA	NA
AZR53507.1|100728_102306_+	yersiniabactin biosynthesis salycil-AMP ligase YbtE	NA	A0A2K9KZV5	Tupanvirus	22.8	2.0e-08
AZR53508.1|102436_104458_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZR53509.1|104793_105582_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	31.2	2.8e-08
AZR53510.1|106080_106338_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53511.1|107222_108419_+	methionine gamma-lyase	NA	A0A0B5JD48	Pandoravirus	28.4	9.3e-27
AZR53512.1|108532_109831_+	transporter	NA	NA	NA	NA	NA
AZR53513.1|109859_111074_-	transcriptional regulator	NA	NA	NA	NA	NA
AZR53514.1|111369_111585_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53515.1|112631_113459_+	APH(6) family putative aminoglycoside O-phosphotransferase	NA	NA	NA	NA	NA
AZR53516.1|115430_115892_+|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	30.5	4.1e-07
AZR53594.1|115857_116184_+|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	39.4	5.8e-16
AZR53517.1|117738_118854_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53518.1|119468_119771_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53519.1|119859_120537_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
AZR53520.1|120536_120884_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AZR53521.1|120903_122475_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.7	9.9e-170
AZR53522.1|122478_123518_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.5	2.0e-41
AZR53523.1|123831_124590_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AZR53524.1|124706_128501_-	outer membrane autotransporter barrel domain-containing protein	NA	NA	NA	NA	NA
AZR53525.1|128953_129208_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53526.1|129501_129900_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53527.1|130478_130916_-	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA	NA
AZR53528.1|131044_131407_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53529.1|134398_135103_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	3.1e-139
>prophage 10
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	143095	146696	187594		Escherichia_phage(50.0%)	3	NA	NA
AZR53595.1|143095_144823_-	DNA primase	NA	A0A0P0ZFY3	Escherichia_phage	32.6	9.9e-14
AZR53534.1|145000_145387_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53535.1|145844_146696_-	NgrC	NA	A0A219UQS0	Bacillus_phage	29.4	1.1e-08
>prophage 11
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	165454	167865	187594	transposase	Stx2-converting_phage(66.67%)	3	NA	NA
AZR53558.1|165454_165874_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	95.9	2.2e-47
AZR53559.1|165870_166221_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	63.8	4.7e-40
AZR53560.1|166251_167865_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	62.6	5.0e-177
>prophage 12
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	187594	176565	185248	187594	tail,head	Streptococcus_phage(25.0%)	13	NA	NA
AZR53570.1|176565_178758_+	DNA topoisomerase 3	NA	A0A1X9I6W8	Streptococcus_phage	29.4	9.9e-43
AZR53571.1|178772_179261_+	hypothetical protein	NA	NA	NA	NA	NA
AZR53572.1|179351_179651_-	RNA-binding protein	NA	A0A0K1LLW2	Caulobacter_phage	55.4	3.6e-20
AZR53573.1|179655_179862_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53574.1|179862_180480_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
AZR53575.1|180535_181192_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53576.1|181191_182619_-	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
AZR53577.1|182622_183123_-	hypothetical protein	NA	I3UMJ0	Colwellia_phage	38.4	9.5e-18
AZR53578.1|183131_183464_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53598.1|183448_183880_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53579.1|183947_184622_-	thymidylate kinase	NA	NA	NA	NA	NA
AZR53580.1|184596_184878_-	hypothetical protein	NA	NA	NA	NA	NA
AZR53581.1|184870_185248_-	hypothetical protein	NA	A0A2H4P7P5	Pseudomonas_phage	48.7	4.8e-22
