assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	1	46523-46850	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Type III-B,Type III-A,Type III-C,Type III-D	TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC,TATTCGATAACTACCCCGAAGAANAGGGGACGAGAAC,ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC	37,37,36	0	0	NA	NA	NA:NA:NA	3,4,4	4	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|59aa|down_1|AP018562.1_49223_49400_+,NA|53aa|down_2|AP018562.1_49486_49645_+,NA|94aa|down_3|AP018562.1_49831_50113_+,NA|68aa|down_5|AP018562.1_51617_51821_+,NA|210aa|down_9|AP018562.1_55168_55798_+	NA|248aa|up_9|AP018562.1_35831_36575_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	cas1|302aa|up_8|AP018562.1_37856_38762_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_7|AP018562.1_38761_39067_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|762aa|up_6|AP018562.1_39068_41354_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_5|AP018562.1_41356_41782_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|up_4|AP018562.1_41783_42428_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|283aa|up_3|AP018562.1_42498_43347_+	TIGR01903, Hypothetical_protein	csm5gr7|347aa|up_2|AP018562.1_43331_44372_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|435aa|up_1|AP018562.1_44371_45676_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|252aa|up_0|AP018562.1_45635_46391_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	RT|509aa|down_0|AP018562.1_47585_49112_+	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|59aa|down_1|AP018562.1_49223_49400_+	NA	NA|53aa|down_2|AP018562.1_49486_49645_+	NA	NA|94aa|down_3|AP018562.1_49831_50113_+	NA	NA|329aa|down_4|AP018562.1_50323_51310_-	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]	NA|68aa|down_5|AP018562.1_51617_51821_+	NA	NA|110aa|down_6|AP018562.1_51836_52166_+	COG3070, TfoX, Regulator of competence-specific genes [Transcription]	NA|522aa|down_7|AP018562.1_52477_54043_+	pfam01494, FAD_binding_3, FAD binding domain	NA|142aa|down_8|AP018562.1_54205_54631_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|210aa|down_9|AP018562.1_55168_55798_+	NA
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	2	662933-663012	2	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	ACTTTCCGCCAGCTTCTGTGTTGG	24	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|166aa|down_9|AP018562.1_673626_674124_+	NA|248aa|up_9|AP018562.1_653184_653928_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|215aa|up_8|AP018562.1_654049_654694_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|251aa|up_7|AP018562.1_654768_655521_-	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|255aa|up_6|AP018562.1_655757_656522_+	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|265aa|up_5|AP018562.1_656585_657380_-	PRK13546, PRK13546, teichoic acids export ABC transporter ATP-binding subunit TagH	NA|301aa|up_4|AP018562.1_657636_658539_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|335aa|up_3|AP018562.1_658733_659738_+	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]	NA|356aa|up_2|AP018562.1_659734_660802_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|133aa|up_1|AP018562.1_660858_661257_+	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|415aa|up_0|AP018562.1_661340_662585_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|576aa|down_0|AP018562.1_663523_665251_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|410aa|down_1|AP018562.1_665618_666848_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|278aa|down_2|AP018562.1_667391_668225_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|266aa|down_3|AP018562.1_668495_669293_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|317aa|down_4|AP018562.1_669378_670329_+	pfam01032, FecCD, FecCD transport family	NA|339aa|down_5|AP018562.1_670325_671342_+	pfam01032, FecCD, FecCD transport family	NA|322aa|down_6|AP018562.1_671560_672526_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|195aa|down_7|AP018562.1_672570_673155_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|121aa|down_8|AP018562.1_673147_673510_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|166aa|down_9|AP018562.1_673626_674124_+	NA
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	3	695806-695890	3	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	ACAACTGCATAAGAGCCCCTAAT	23	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|230aa|down_2|AP018562.1_697728_698418_-,NA|228aa|down_9|AP018562.1_701769_702453_-	NA|206aa|up_9|AP018562.1_684561_685179_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|AP018562.1_685194_686202_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|AP018562.1_686830_687628_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|189aa|up_6|AP018562.1_688071_688638_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|AP018562.1_689338_691489_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|up_4|AP018562.1_691592_691994_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|AP018562.1_692184_692901_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|160aa|up_2|AP018562.1_692900_693380_+	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|219aa|up_1|AP018562.1_694089_694746_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|297aa|up_0|AP018562.1_694832_695723_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|399aa|down_0|AP018562.1_695930_697127_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|AP018562.1_697141_697630_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|AP018562.1_697728_698418_-	NA	NA|148aa|down_3|AP018562.1_698545_698989_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|119aa|down_4|AP018562.1_699079_699436_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|100aa|down_5|AP018562.1_699575_699875_+	pfam12543, DUF3738, Protein of unknown function (DUF3738)	NA|181aa|down_6|AP018562.1_699956_700499_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|AP018562.1_700741_701308_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|AP018562.1_701308_701767_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|AP018562.1_701769_702453_-	NA
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	4	915197-915302	2	PILER-CR	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	AGTAAAAAGAAACAAAAGCATCA	23	0	0	NA	NA	NA	2	2	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|43aa|up_7|AP018562.1_910040_910169_+,NA|37aa|up_6|AP018562.1_910239_910350_+,NA|67aa|up_5|AP018562.1_910336_910537_+,NA|37aa|up_3|AP018562.1_912203_912314_+,NA|105aa|up_2|AP018562.1_912345_912660_-,NA	NA|92aa|up_9|AP018562.1_908197_908473_+	TIGR01592, Uncharacterized_9	NA|424aa|up_8|AP018562.1_908600_909872_+	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|43aa|up_7|AP018562.1_910040_910169_+	NA	NA|37aa|up_6|AP018562.1_910239_910350_+	NA	NA|67aa|up_5|AP018562.1_910336_910537_+	NA	NA|186aa|up_4|AP018562.1_911172_911730_+	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|37aa|up_3|AP018562.1_912203_912314_+	NA	NA|105aa|up_2|AP018562.1_912345_912660_-	NA	NA|347aa|up_1|AP018562.1_912987_914028_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|347aa|up_0|AP018562.1_914068_915109_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|283aa|down_0|AP018562.1_915497_916346_+	COG1801, COG1801, Uncharacterized conserved protein [Function unknown]	NA|276aa|down_1|AP018562.1_916358_917186_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|440aa|down_2|AP018562.1_917212_918532_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|306aa|down_3|AP018562.1_918615_919533_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|131aa|down_4|AP018562.1_919653_920046_+	COG4470, COG4470, Uncharacterized protein conserved in bacteria [Function unknown]	NA|89aa|down_5|AP018562.1_920124_920391_-	pfam11256, DUF3055, Protein of unknown function (DUF3055)	NA|145aa|down_6|AP018562.1_920488_920923_+	COG2445, COG2445, Uncharacterized conserved protein [Function unknown]	NA|260aa|down_7|AP018562.1_920922_921702_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|320aa|down_8|AP018562.1_921735_922695_+	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|51aa|down_9|AP018562.1_923272_923425_+	pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	5	1047937-1048019	4	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGCGGGGCGCCAACACAGA	27	1	1	1047964-1047992	AP018562.1_1047853-1047881	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|39aa|up_7|AP018562.1_1040774_1040891_-,NA	NA|119aa|up_9|AP018562.1_1038946_1039303_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|320aa|up_8|AP018562.1_1039766_1040726_+	COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|39aa|up_7|AP018562.1_1040774_1040891_-	NA	NA|71aa|up_6|AP018562.1_1040971_1041184_-	COG2314, XynA, Predicted membrane protein [Function unknown]	NA|186aa|up_5|AP018562.1_1041342_1041900_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|313aa|up_4|AP018562.1_1041951_1042890_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|457aa|up_3|AP018562.1_1043062_1044433_+	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|558aa|up_2|AP018562.1_1044419_1046093_+	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]	NA|268aa|up_1|AP018562.1_1046079_1046883_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|274aa|up_0|AP018562.1_1046875_1047697_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|110aa|down_0|AP018562.1_1048331_1048661_-	pfam09023, Staphostatin_B, Staphostatin B	NA|377aa|down_1|AP018562.1_1048698_1049829_-	pfam05543, Peptidase_C47, Staphopain peptidase C47	NA|354aa|down_2|AP018562.1_1049968_1051030_-	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|362aa|down_3|AP018562.1_1051563_1052649_-	PRK07683, PRK07683, aminotransferase A; Validated	NA|337aa|down_4|AP018562.1_1053472_1054483_-	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|140aa|down_5|AP018562.1_1054635_1055055_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|1262aa|down_6|AP018562.1_1055484_1059270_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|146aa|down_7|AP018562.1_1059496_1059934_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|163aa|down_8|AP018562.1_1060086_1060575_-	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|402aa|down_9|AP018562.1_1060611_1061817_-	COG1316, LytR, Transcriptional regulator [Transcription]
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	6	1242261-1242349	5	CRISPRCasFinder	no	cas3	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	CAGTAATCAATAAAATTGATAACTG	25	0	0	NA	NA	NA	1	1	Unclear	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|AP018562.1_1231907_1232552_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|215aa|up_8|AP018562.1_1232558_1233203_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|AP018562.1_1233452_1233641_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|AP018562.1_1234084_1234459_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|AP018562.1_1234473_1236120_+	TIGR03599, YloV, DAK2 domain fusion protein YloV	cas3|687aa|up_4|AP018562.1_1236293_1238354_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|AP018562.1_1238758_1239331_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|AP018562.1_1239335_1240322_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|AP018562.1_1240314_1241241_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|247aa|up_0|AP018562.1_1241227_1241968_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|AP018562.1_1242437_1242671_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|AP018562.1_1242786_1243518_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1190aa|down_2|AP018562.1_1243649_1247219_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|AP018562.1_1247215_1248466_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|AP018562.1_1248452_1248785_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|AP018562.1_1248809_1250177_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|AP018562.1_1250505_1250781_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|AP018562.1_1250967_1251471_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|AP018562.1_1251470_1252208_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|AP018562.1_1252310_1252661_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	7	1379400-1379484	6	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TTCTCTGTGTTGGGGCCCACCCAAACTTG	29	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|44aa|down_6|AP018562.1_1389467_1389599_+	NA|663aa|up_9|AP018562.1_1365086_1367075_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|81aa|up_8|AP018562.1_1367370_1367613_+	pfam03672, UPF0154, Uncharacterized protein family (UPF0154)	NA|134aa|up_7|AP018562.1_1367857_1368259_+	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|374aa|up_6|AP018562.1_1368383_1369505_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1010aa|up_5|AP018562.1_1369508_1372538_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|121aa|up_4|AP018562.1_1372601_1372964_-	PRK13954, mscL, large conductance mechanosensitive channel protein MscL	NA|549aa|up_3|AP018562.1_1373166_1374813_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|902aa|up_2|AP018562.1_1375392_1378098_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|156aa|up_1|AP018562.1_1378270_1378738_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|99aa|up_0|AP018562.1_1378972_1379269_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_0|AP018562.1_1379755_1380364_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|672aa|down_1|AP018562.1_1380545_1382561_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|801aa|down_2|AP018562.1_1382560_1384963_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|438aa|down_3|AP018562.1_1385360_1386674_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|284aa|down_4|AP018562.1_1387231_1388083_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|383aa|down_5|AP018562.1_1388277_1389426_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|44aa|down_6|AP018562.1_1389467_1389599_+	NA	NA|841aa|down_7|AP018562.1_1389908_1392431_+	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|176aa|down_8|AP018562.1_1392640_1393168_-	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|328aa|down_9|AP018562.1_1393295_1394279_+	COG1316, LytR, Transcriptional regulator [Transcription]
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	8	2017123-2017207	7	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	AGCTGACATTCCGTCAACTTCTGTGT	26	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|59aa|up_4|AP018562.1_2011689_2011866_-,NA|134aa|down_5|AP018562.1_2024406_2024808_-,NA|36aa|down_6|AP018562.1_2024788_2024896_+	NA|247aa|up_9|AP018562.1_2007869_2008610_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|291aa|up_8|AP018562.1_2008609_2009482_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|143aa|up_7|AP018562.1_2009502_2009931_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|299aa|up_6|AP018562.1_2010159_2011056_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_5|AP018562.1_2011052_2011433_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_4|AP018562.1_2011689_2011866_-	NA	NA|429aa|up_3|AP018562.1_2012405_2013692_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|67aa|up_2|AP018562.1_2013976_2014177_-	pfam03642, MAP, MAP domain	NA|365aa|up_1|AP018562.1_2014297_2015392_-	pfam03642, MAP, MAP domain	NA|331aa|up_0|AP018562.1_2015777_2016770_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|down_0|AP018562.1_2017344_2018361_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|351aa|down_1|AP018562.1_2018382_2019435_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|411aa|down_2|AP018562.1_2019851_2021084_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_3|AP018562.1_2021688_2022996_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|151aa|down_4|AP018562.1_2023857_2024310_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|134aa|down_5|AP018562.1_2024406_2024808_-	NA	NA|36aa|down_6|AP018562.1_2024788_2024896_+	NA	NA|121aa|down_7|AP018562.1_2025160_2025523_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|39aa|down_8|AP018562.1_2025634_2025751_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|539aa|down_9|AP018562.1_2026605_2028222_-	PRK00013, groEL, chaperonin GroEL; Reviewed
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	9	2229686-2229829	8	CRISPRCasFinder	no	WYL	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	CTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTT	55	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|250aa|up_8|AP018562.1_2217697_2218447_-,NA	NA|203aa|up_9|AP018562.1_2217075_2217684_-	pfam13021, DUF3885, Domain of unknown function (DUF3885)	NA|250aa|up_8|AP018562.1_2217697_2218447_-	NA	NA|283aa|up_7|AP018562.1_2218871_2219720_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|139aa|up_6|AP018562.1_2219789_2220206_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|805aa|up_5|AP018562.1_2220604_2223019_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	WYL|310aa|up_4|AP018562.1_2223193_2224123_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|210aa|up_3|AP018562.1_2224213_2224843_+	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|142aa|up_2|AP018562.1_2225037_2225463_+	pfam03642, MAP, MAP domain	NA|235aa|up_1|AP018562.1_2225851_2226556_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_0|AP018562.1_2226592_2228257_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|479aa|down_0|AP018562.1_2229867_2231304_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|AP018562.1_2231652_2232051_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|AP018562.1_2232064_2232502_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_3|AP018562.1_2232741_2233545_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|222aa|down_4|AP018562.1_2233549_2234215_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|AP018562.1_2234345_2235206_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|AP018562.1_2235202_2236012_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_7|AP018562.1_2236503_2236872_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_8|AP018562.1_2236888_2237833_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|AP018562.1_2237906_2238296_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCA_003967115.1_ASM396711v1	AP018562	Staphylococcus argenteus 58113 DNA, complete genome	10	2581258-2581352	9	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TCATTATTTTCCAAATAATAAGTG	24	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|48aa|up_4|AP018562.1_2575384_2575528_-,NA|67aa|up_1|AP018562.1_2578219_2578420_+,NA|121aa|down_9|AP018562.1_2592518_2592881_+	NA|60aa|up_9|AP018562.1_2569486_2569666_-	pfam12669, P12, Virus attachment protein p12 family	NA|661aa|up_8|AP018562.1_2569669_2571652_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|up_7|AP018562.1_2571663_2571891_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|820aa|up_6|AP018562.1_2572137_2574597_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_5|AP018562.1_2574760_2575309_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|48aa|up_4|AP018562.1_2575384_2575528_-	NA	NA|515aa|up_3|AP018562.1_2575663_2577208_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|203aa|up_2|AP018562.1_2577402_2578011_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|67aa|up_1|AP018562.1_2578219_2578420_+	NA	NA|803aa|up_0|AP018562.1_2578657_2581066_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|72aa|down_0|AP018562.1_2581365_2581581_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|AP018562.1_2581670_2582669_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|388aa|down_2|AP018562.1_2582691_2583855_-	PRK08068, PRK08068, transaminase; Reviewed	NA|265aa|down_3|AP018562.1_2584510_2585305_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|606aa|down_4|AP018562.1_2585664_2587482_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|148aa|down_5|AP018562.1_2587999_2588443_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|272aa|down_6|AP018562.1_2588753_2589569_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|down_7|AP018562.1_2590089_2591145_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|190aa|down_8|AP018562.1_2591539_2592109_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|121aa|down_9|AP018562.1_2592518_2592881_+	NA
