The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	41411	90378	2618380	transposase	Staphylococcus_phage(84.62%)	46	NA	NA
BBD88657.1|41411_42086_-|transposase	transposase for IS431	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	2.9e-126
BBD88658.1|42343_42511_+	putative HMG-CoA synthase	NA	NA	NA	NA	NA
BBD88659.1|43427_44171_+	glycerophosphoryldiester phosphodiesterase homologue	NA	NA	NA	NA	NA
BBD88660.1|44267_44696_+	maoC like domain protein	NA	NA	NA	NA	NA
BBD88661.1|44741_46748_-	penicillin binding protein 2 prime	NA	NA	NA	NA	NA
BBD88662.1|46995_47139_+|transposase	transposase for IS431	transposase	A0A0N9RU54	Staphylococcus_phage	91.5	2.3e-17
BBD88663.1|47418_47670_+|transposase	transposase for IS431	transposase	A0A0N9RU54	Staphylococcus_phage	96.4	4.4e-40
BBD88664.1|47729_48158_-	putative PhnB protein	NA	NA	NA	NA	NA
BBD88665.1|48238_49168_+	HTH domain family	NA	NA	NA	NA	NA
BBD88666.1|49329_49812_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88667.1|49879_50194_+|transposase	transposase for ISSau4	transposase	A0A0N7GFG6	Staphylococcus_phage	100.0	1.1e-51
BBD88668.1|50178_51021_+|transposase	transposase for ISSau4	transposase	A0A0N9SIX5	Staphylococcus_phage	99.3	4.6e-73
BBD88669.1|51027_52593_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88670.1|52787_53897_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88671.1|53889_54258_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88672.1|54257_55874_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88673.1|56098_57778_+	cassette chromosome recombinase C	NA	A0A0S2SXR4	Bacillus_phage	29.2	2.4e-44
BBD88674.1|57866_58205_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88675.1|58298_58610_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88676.1|58624_59128_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88677.1|59141_59363_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88678.1|59437_62557_-	type I restriction-modification system, restriction subunit R	NA	A0A220A398	Liberibacter_phage	27.2	1.3e-72
BBD88679.1|62540_63842_-	type I restriction-modification system, specificity subunit S	NA	NA	NA	NA	NA
BBD88680.1|63831_65346_-	type I restriction-modification system, DNA methylase	NA	A0A2H4PQP4	Staphylococcus_phage	30.2	2.3e-51
BBD88681.1|65495_65624_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88682.1|65754_67851_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88683.1|67852_69601_+	ATP-dependent DNA helicase UvrD/PcrA	NA	NA	NA	NA	NA
BBD88684.1|69819_69993_+	multidrug resistance protein	NA	NA	NA	NA	NA
BBD88685.1|70060_71485_-	hypothetical protein	NA	NA	NA	NA	NA
BBD88686.1|72429_72597_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88687.1|73005_73527_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88688.1|73779_74541_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88689.1|74628_75093_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88690.1|75098_76880_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88691.1|77085_77994_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88692.1|78232_79789_+	type I restriction-modification system, DNA methylase	NA	A0A2H4PQP4	Staphylococcus_phage	70.8	6.7e-211
BBD88693.1|79781_80474_+	type I restriction-modification system, specificity subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.4	1.1e-16
BBD88694.1|80542_81001_+	type I restriction-modification system, specificity subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	44.9	1.0e-05
BBD88695.1|81113_82028_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88696.1|82254_83244_+	beta-hemolysin	NA	A0A1P8L6H7	Staphylococcus_phage	55.1	3.6e-85
BBD88697.1|83714_84419_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88698.1|84475_85147_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88699.1|85641_87492_+	tyrosine decarboxylase	NA	NA	NA	NA	NA
BBD88700.1|87552_88950_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA	NA
BBD88701.1|89073_89499_+	hypothetical protein	NA	NA	NA	NA	NA
BBD88702.1|89535_90378_-|transposase	transposase for ISSau4	transposase	A0A0N9SIX5	Staphylococcus_phage	99.3	4.6e-73
>prophage 2
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	585740	602020	2618380	protease,holin	Bacillus_phage(33.33%)	16	NA	NA
BBD89148.1|585740_586523_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
BBD89149.1|586542_587334_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
BBD89150.1|587479_588142_+	putative ABC transport system ATP-binding protein	NA	W8CYL7	Bacillus_phage	37.1	2.5e-18
BBD89151.1|588134_588911_+	putative ABC transport system permease protein	NA	NA	NA	NA	NA
BBD89152.1|588979_590449_-	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein	NA	NA	NA	NA	NA
BBD89153.1|590441_591113_-	response regulator	NA	NA	NA	NA	NA
BBD89154.1|591260_591494_+	hypothetical protein	NA	NA	NA	NA	NA
BBD89155.1|591629_592796_+	hypothetical protein	NA	NA	NA	NA	NA
BBD89156.1|592838_594197_-	putative para-nitrobenzyl esterase	NA	NA	NA	NA	NA
BBD89157.1|594282_595962_-	putative Amino acid transporter	NA	NA	NA	NA	NA
BBD89158.1|596146_596746_+	hypothetical protein	NA	NA	NA	NA	NA
BBD89159.1|596896_597949_-	zinc-dependent dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	21.2	1.4e-10
BBD89160.1|598461_599733_+|holin	choline transport ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	51.6	8.9e-20
BBD89161.1|599732_600368_+|holin	probable glycine betaine/carnitine/choline ABC transporter	holin	NA	NA	NA	NA
BBD89162.1|600389_601334_+|holin	glycine betaine/carnitine/choline ABC transporter	holin	NA	NA	NA	NA
BBD89163.1|601333_602020_+|holin	probable glycine betaine/carnitine/choline ABC transporter	holin	NA	NA	NA	NA
>prophage 3
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	1134128	1175157	2618380	tRNA	Staphylococcus_phage(96.3%)	33	NA	NA
BBD89686.1|1134128_1135538_+	2-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.0	7.7e-174
BBD89687.1|1135527_1136529_+	O-succinylbenzoic acid synthetase	NA	A0A2H4PQM0	Staphylococcus_phage	53.3	3.1e-100
BBD89688.1|1136525_1136777_-	membrane protein	NA	A0A2H4PQM5	Staphylococcus_phage	88.0	2.7e-37
BBD89689.1|1136845_1137319_+	MutT/nudix family protein	NA	A0A2H4PQM4	Staphylococcus_phage	57.1	1.6e-46
BBD89690.1|1137299_1138082_+	hypothetical protein	NA	A0A2H4PQM6	Staphylococcus_phage	74.1	4.5e-107
BBD89691.1|1138160_1139753_-	phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	88.1	1.5e-279
BBD89692.1|1139933_1140062_+	hypothetical protein	NA	NA	NA	NA	NA
BBD89693.1|1140128_1141325_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	87.2	7.2e-197
BBD89694.1|1141431_1142340_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.5	6.9e-107
BBD89695.1|1142495_1143332_+	plant metabolite dehydrogenase homolog	NA	A0A2H4PQR8	Staphylococcus_phage	71.1	4.5e-113
BBD89696.1|1143608_1143962_-	CrcB-like protein	NA	A0A2H4PQQ7	Staphylococcus_phage	35.0	9.7e-09
BBD89697.1|1143958_1144324_-	putative camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	66.1	9.3e-39
BBD89698.1|1144421_1144730_-	hypothetical protein	NA	NA	NA	NA	NA
BBD89699.1|1145023_1145737_+	putative transaldolase	NA	H8ZNI7	Synechococcus_phage	38.2	6.5e-20
BBD89700.1|1145895_1146339_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	51.0	8.7e-23
BBD89701.1|1146325_1146769_-	hypothetical protein	NA	NA	NA	NA	NA
BBD89702.1|1146782_1147259_-	RNA polymerase sigma factor, sigma-70 family	NA	A0A2H4PQT5	Staphylococcus_phage	46.8	2.2e-32
BBD89703.1|1147467_1147686_+	hypothetical protein	NA	NA	NA	NA	NA
BBD89704.1|1148000_1148852_+	putative N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JNR1	Staphylococcus_phage	46.4	4.9e-30
BBD89705.1|1149169_1150660_+	hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	91.1	4.7e-20
BBD89706.1|1151084_1152128_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	65.9	5.8e-134
BBD89707.1|1152134_1152767_+	riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	79.5	1.5e-89
BBD89708.1|1152778_1153960_+	riboflavin biosynthesis protein RibA	NA	A0A2H4PQS2	Staphylococcus_phage	77.9	3.9e-179
BBD89709.1|1154003_1154462_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.9	1.9e-60
BBD89710.1|1154534_1155536_-	proline dehydrohenase homolog	NA	A0A2H4PQT6	Staphylococcus_phage	73.9	2.0e-139
BBD89711.1|1155783_1156611_+	lysophospholipase homolog	NA	NA	NA	NA	NA
BBD89712.1|1157174_1157576_+	HTH-type transcriptional regulator Rot	NA	NA	NA	NA	NA
BBD89713.1|1157649_1158213_-	rRNA methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	62.2	2.3e-60
BBD89714.1|1158209_1159169_-	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	4.3e-67
BBD89715.1|1159275_1160496_+	multidrug resistance protein homolog	NA	A0A2H4PQR6	Staphylococcus_phage	83.5	3.9e-182
BBD89716.1|1160792_1163207_+|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	88.7	0.0e+00
BBD89717.1|1163230_1163542_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	3.5e-34
BBD89718.1|1164045_1175157_+	SesA-like protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.8	2.7e-51
>prophage 4
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	1292907	1302048	2618380	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
BBD89822.1|1292907_1293912_+	Holliday junction ATP-dependent DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
BBD89823.1|1293913_1294939_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
BBD89824.1|1294959_1296099_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	1.1e-85
BBD89825.1|1296114_1296378_+	preprotein translocase, YajC subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	42.6	9.8e-06
BBD89826.1|1296809_1299101_+	protein-export membrane protein SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.8	1.7e-32
BBD89827.1|1299237_1301511_+	putative single-strand DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	28.3	1.8e-63
BBD89828.1|1301529_1302048_+	adenine phosphoribosyl transferase	NA	A0A1V0SKE5	Klosneuvirus	45.5	1.1e-29
>prophage 5
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	1431722	1441558	2618380		Bacillus_phage(42.86%)	11	NA	NA
BBD89965.1|1431722_1432610_+	tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	32.1	2.1e-39
BBD89966.1|1432662_1433196_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
BBD89967.1|1433293_1434025_+	putative segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	27.8	7.9e-05
BBD89968.1|1434017_1434560_+	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	33.8	1.2e-10
BBD89969.1|1434552_1435290_+	pseudouridine synthase	NA	NA	NA	NA	NA
BBD89970.1|1435425_1436151_+	respiratory response protein SrrA	NA	W8CYM9	Bacillus_phage	40.9	4.6e-45
BBD89971.1|1436131_1437898_+	respiratory response protein SrrB	NA	W8CYF6	Bacillus_phage	32.4	4.4e-33
BBD89972.1|1438170_1438710_+	hypothetical protein	NA	NA	NA	NA	NA
BBD89973.1|1438872_1439121_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	50.7	2.0e-16
BBD89974.1|1439229_1440192_+	hypothetical protein	NA	NA	NA	NA	NA
BBD89975.1|1440178_1441558_+	probable ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	33.7	8.1e-59
>prophage 6
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	1791097	1858570	2618380	head,tRNA,portal,terminase,tail,holin,integrase	Staphylococcus_phage(89.39%)	92	1796845:1796862	1857326:1857343
BBD90274.1|1791097_1793848_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	26.4	1.8e-86
BBD90275.1|1794190_1794844_-	putative cell-division initiation protein	NA	NA	NA	NA	NA
BBD90276.1|1794872_1795652_-	S4 domain protein	NA	NA	NA	NA	NA
BBD90277.1|1795800_1796091_-	hypothetical protein	NA	NA	NA	NA	NA
BBD90278.1|1796102_1796702_-	cell division protein SepF	NA	NA	NA	NA	NA
BBD90279.1|1796707_1797382_-	putative PLP dependent protein	NA	NA	NA	NA	NA
1796845:1796862	attL	CTTCTTTTTTATGTCTTA	NA	NA	NA	NA
BBD90280.1|1797399_1798191_-	hypothetical protein	NA	NA	NA	NA	NA
BBD90281.1|1798465_1799650_-	cell division protein FtsZ	NA	NA	NA	NA	NA
BBD90282.1|1799682_1801083_-	cell division protein FtsA	NA	NA	NA	NA	NA
BBD90283.1|1801186_1802602_-	cell division protein FtsQ	NA	NA	NA	NA	NA
BBD90284.1|1802617_1803967_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA	NA
BBD90285.1|1803968_1804934_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
BBD90286.1|1805115_1807452_-	penicillin-binding protein 1	NA	NA	NA	NA	NA
BBD90287.1|1807432_1807834_-	cell division protein	NA	NA	NA	NA	NA
BBD90288.1|1807846_1808782_-	16S rRNA (cytosine1402-N4)-methyltransferase	NA	NA	NA	NA	NA
BBD90289.1|1808796_1809228_-	cell division protein MraZ	NA	NA	NA	NA	NA
BBD90290.1|1809371_1810985_-	hypothetical protein	NA	NA	NA	NA	NA
BBD90291.1|1811173_1811614_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
BBD90292.1|1811848_1812535_-	L-2-haloalkanoic acid dehalogenase homologue	NA	NA	NA	NA	NA
BBD90293.1|1812653_1812788_-	phenol soluble modulin beta 4	NA	NA	NA	NA	NA
BBD90294.1|1812836_1812971_-	phenol soluble modulin beta 3	NA	NA	NA	NA	NA
BBD90295.1|1813024_1813159_-	phenol soluble modulin beta 2	NA	NA	NA	NA	NA
BBD90296.1|1813194_1813329_-	phenol soluble modulin beta 1	NA	NA	NA	NA	NA
BBD90297.1|1813366_1813501_-	phenol soluble modulin beta 1	NA	NA	NA	NA	NA
BBD90298.1|1814258_1815431_+	transporter, major facilitator family protein	NA	NA	NA	NA	NA
BBD90299.1|1815629_1816103_-	putative amidase	NA	A0A0N6WMR3	Staphylococcus_phage	73.2	3.5e-62
BBD90300.1|1816273_1817086_-	putative amidase	NA	Q4ZBP3	Staphylococcus_phage	75.7	2.9e-109
BBD90301.1|1817095_1817395_-|holin	phage holin	holin	Q4ZCR8	Staphylococcus_virus	68.0	8.8e-27
BBD90302.1|1817440_1817587_-	XkdX family protein	NA	A0A2H4J8V3	uncultured_Caudovirales_phage	79.2	5.8e-16
BBD90303.1|1817579_1817960_-	hypothetical protein	NA	NA	NA	NA	NA
BBD90304.1|1817974_1819600_-	collagen triple helix repeat protein	NA	A0A1W6JNS7	Staphylococcus_phage	95.2	4.9e-87
BBD90305.1|1819654_1821559_-	putative phage cell wall-associated hydrolase	NA	A0A1W6JNR1	Staphylococcus_phage	99.5	1.2e-307
BBD90306.1|1821609_1821996_-	hypothetical protein	NA	A0A1W6JNR6	Staphylococcus_phage	98.4	4.4e-63
BBD90307.1|1821979_1822399_-	hypothetical phage membrane protein	NA	A0A1W6JNR2	Staphylococcus_phage	100.0	4.2e-75
BBD90308.1|1822414_1823575_-	phage protein	NA	A0A1W6JNR8	Staphylococcus_phage	99.2	1.7e-214
BBD90309.1|1823588_1825466_-	hypothetical phage peptidase	NA	A0A1W6JNS8	Staphylococcus_phage	99.2	0.0e+00
BBD90310.1|1825466_1826726_-	phage protein	NA	A0A1W6JNY1	Staphylococcus_phage	99.8	3.6e-239
BBD90311.1|1826736_1827696_-|tail	phage tail protein	tail	A0A1W6JNU3	Staphylococcus_phage	99.4	5.1e-185
BBD90312.1|1827707_1831583_-	TMP repeat protein	NA	A0A1W6JNU6	Staphylococcus_phage	95.7	1.5e-219
BBD90313.1|1831597_1831942_-	phage protein	NA	A0A1W6JNR9	Staphylococcus_phage	99.1	5.0e-58
BBD90314.1|1831986_1832346_-	phage protein	NA	A0A1W6JNQ1	Staphylococcus_phage	100.0	1.9e-60
BBD90315.1|1832406_1832961_-|tail	phage major tail protein 2 family protein	tail	A0A1W6JNU0	Staphylococcus_phage	100.0	1.4e-94
BBD90316.1|1833006_1833396_-	phage protein	NA	A0A1W6JNQ3	Staphylococcus_phage	100.0	1.3e-67
BBD90317.1|1833406_1833757_-	phage protein	NA	A0A1W6JNQ6	Staphylococcus_phage	100.0	1.3e-58
BBD90318.1|1833758_1834061_-	phage protein	NA	A0A1W6JNQ9	Staphylococcus_phage	100.0	1.4e-51
BBD90319.1|1834057_1834387_-	phage QLRG family protein	NA	A0A1W6JNR3	Staphylococcus_phage	100.0	2.1e-53
BBD90320.1|1834388_1834658_-	phage protein	NA	A0A1W6JNX0	Staphylococcus_phage	100.0	3.9e-42
BBD90321.1|1834679_1835606_-|head	phage head protein	head	A0A1W6JNT3	Staphylococcus_phage	100.0	5.1e-174
BBD90322.1|1835623_1836238_-	phage protein	NA	A0A1W6JNT6	Staphylococcus_phage	100.0	3.2e-39
BBD90323.1|1836485_1836638_-	hypothetical protein	NA	A0A1W6JNR0	Staphylococcus_phage	100.0	8.9e-20
BBD90324.1|1836624_1836783_-	phage protein	NA	A0A1W6JNP6	Staphylococcus_phage	100.0	7.6e-22
BBD90325.1|1836782_1837733_-	phage Mu protein F-like protein	NA	A0A1W6JNS6	Staphylococcus_phage	100.0	7.6e-165
BBD90326.1|1837739_1839275_-|portal	phage portal protein, SPP1 Gp6-like	portal	A0A1W6JNP8	Staphylococcus_phage	99.8	1.2e-292
BBD90327.1|1839286_1840570_-|terminase	phage terminase large subunit	terminase	A0A1W6JNP5	Staphylococcus_phage	99.8	4.3e-256
BBD90328.1|1840572_1840950_-	helix-turn-helix protein, YlxM/p13 domain protein	NA	A0A1W6JNP4	Staphylococcus_phage	100.0	2.3e-64
BBD90329.1|1840995_1841196_-	phage protein	NA	A0A1W6JNQ8	Staphylococcus_phage	100.0	2.6e-27
BBD90330.1|1841415_1841832_-	phage protein	NA	A0A1W6JNV8	Staphylococcus_phage	100.0	6.4e-76
BBD90331.1|1841902_1842073_-	regulator RinB	NA	A0A1W6JNS3	Staphylococcus_phage	100.0	2.1e-25
BBD90332.1|1842078_1842219_-	hypothetical protein	NA	A0A1W6JNS9	Staphylococcus_phage	97.8	1.2e-15
BBD90333.1|1842255_1842681_-	putative dUTP pyrophosphatase	NA	A0A1W6JNN6	Staphylococcus_phage	99.3	5.2e-73
BBD90334.1|1842680_1842851_-	hypothetical protein	NA	A0A1W6JNR7	Staphylococcus_phage	100.0	6.3e-22
BBD90335.1|1842988_1843165_-	hypothetical protein	NA	A0A1W6JNN8	Staphylococcus_phage	100.0	1.2e-28
BBD90336.1|1843151_1843421_-	hypothetical protein	NA	A0A1W6JNN9	Staphylococcus_phage	100.0	6.6e-42
BBD90337.1|1843479_1843854_-	phage DNA N-6-adenine-methyltransferase-like protein	NA	A0A1W6JNN4	Staphylococcus_phage	100.0	1.9e-71
BBD90338.1|1843867_1844026_-	hypothetical protein	NA	A0A1W6JNP9	Staphylococcus_phage	100.0	6.4e-21
BBD90339.1|1844028_1844226_-	hypothetical protein	NA	A0A1W6JNU5	Staphylococcus_phage	100.0	7.8e-32
BBD90340.1|1844327_1844522_-	hypothetical protein	NA	A0A1W6JNR4	Staphylococcus_phage	96.9	7.4e-27
BBD90341.1|1844514_1844922_-	hypothetical protein	NA	A0A1W6JNS0	Staphylococcus_phage	96.3	1.6e-71
BBD90342.1|1844930_1845176_-	hypothetical protein	NA	A0A1W6JNN7	Staphylococcus_phage	96.3	2.5e-40
BBD90343.1|1845178_1845334_-	hypothetical protein	NA	A0A1W6JNM0	Staphylococcus_phage	94.1	4.5e-19
BBD90344.1|1845327_1846098_-	DNA replication protein	NA	A0A1W6JNQ7	Staphylococcus_phage	96.5	5.2e-140
BBD90345.1|1846108_1846711_-	phage replication protein	NA	W5R8N2	Staphylococcus_phage	74.3	2.8e-56
BBD90346.1|1846859_1847540_-	phi PV83 orf 19-like protein	NA	A0A1W6JNM5	Staphylococcus_phage	94.1	4.8e-121
BBD90347.1|1847540_1848092_-	hypothetical protein	NA	A0A1W6JNP0	Staphylococcus_phage	100.0	1.3e-103
BBD90348.1|1848104_1848524_-	SSB family protein	NA	A0A1W6JNT4	Staphylococcus_phage	100.0	3.7e-63
BBD90349.1|1848520_1849168_-	ERF family protein	NA	A0A1W6JNQ5	Staphylococcus_phage	97.2	7.8e-113
BBD90350.1|1849160_1849382_-	hypothetical protein	NA	A0A1W6JNQ2	Staphylococcus_phage	98.6	1.1e-34
BBD90351.1|1849381_1849630_-	hypothetical protein	NA	A0A1W6JNM8	Staphylococcus_phage	100.0	2.2e-07
BBD90352.1|1849691_1849865_-	hypothetical protein	NA	A0A1W6JNL3	Staphylococcus_phage	96.5	1.9e-21
BBD90353.1|1849878_1850088_-	hypothetical protein	NA	A0A1W6JNP3	Staphylococcus_phage	94.2	2.6e-30
BBD90354.1|1850175_1850382_+	hypothetical protein	NA	A0A141VTR0	Staphylococcus_phage	55.2	4.6e-11
BBD90355.1|1850367_1850517_-	hypothetical protein	NA	Q4ZC32	Staphylococcus_virus	61.2	4.2e-06
BBD90356.1|1850622_1851384_-	phage regulatory protein, Rha family	NA	A0A2H4J098	uncultured_Caudovirales_phage	84.3	7.7e-120
BBD90357.1|1851402_1851633_-	hypothetical protein	NA	A0A0N9BAY2	Staphylococcus_phage	89.3	5.9e-31
BBD90358.1|1851784_1852099_+	CI-like repressor, phage associated	NA	A0A1W6JQG9	Staphylococcus_phage	98.1	2.4e-51
BBD90359.1|1852110_1852575_+	phage protein	NA	A0A1W6JQG2	Staphylococcus_phage	89.5	1.9e-76
BBD90360.1|1852744_1853131_+	abortive infection bacteriophage resistance protein	NA	A0A1W6JNL9	Staphylococcus_phage	100.0	3.3e-66
BBD90361.1|1853198_1855106_+	adenine methyltransferase	NA	A0A1W6JNK1	Staphylococcus_phage	100.0	0.0e+00
BBD90362.1|1855089_1856109_+	hypothetical protein	NA	A0A1W6JNN3	Staphylococcus_phage	100.0	7.0e-193
BBD90363.1|1856169_1857216_+|integrase	integrase	integrase	A0A2H4J9L9	uncultured_Caudovirales_phage	72.7	2.1e-147
BBD90364.1|1857474_1857984_-	hypothetical protein	NA	NA	NA	NA	NA
1857326:1857343	attR	CTTCTTTTTTATGTCTTA	NA	NA	NA	NA
BBD90365.1|1857976_1858570_-	non-canonical purine NTP pyrophosphatase	NA	D2KCJ6	Cassava_brown_streak_virus	31.1	7.6e-14
>prophage 7
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	1948671	1957141	2618380		Synechococcus_phage(33.33%)	9	NA	NA
BBD90453.1|1948671_1949238_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.2	3.8e-31
BBD90454.1|1949234_1950269_-	phosphoribosylformylglycinamidine cyclo-ligase PurM	NA	Q58MH8	Prochlorococcus_phage	42.7	4.1e-63
BBD90455.1|1950261_1951746_-	phosphoribosylpyrophosphate amidotransferase PurF	NA	A0A0M3SGR2	Mollivirus	32.8	9.0e-48
BBD90456.1|1951724_1953914_-	phosphoribosylformylglycinamidine synthase I PurQ	NA	A6N228	Microbacterium_phage	40.5	7.4e-139
BBD90457.1|1953906_1954578_-	phosphoribosylformylglycinamidine synthase I PurQ	NA	NA	NA	NA	NA
BBD90458.1|1954579_1954840_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
BBD90459.1|1954836_1955544_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	43.8	5.6e-48
BBD90460.1|1955544_1956672_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
BBD90461.1|1956658_1957141_-	putative Phosphoribosylaminoimidazolecarboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	1.8e-21
>prophage 8
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	2199484	2208399	2618380		uncultured_Caudovirales_phage(71.43%)	9	NA	NA
BBD90702.1|2199484_2200264_-	iron complex transport system ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	32.0	4.8e-16
BBD90703.1|2200260_2201220_-	iron complex transport system permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	92.0	2.9e-15
BBD90704.1|2201203_2202178_-	iron complex transport system permease protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	95.4	6.8e-161
BBD90705.1|2202161_2202362_-	hypothetical protein	NA	NA	NA	NA	NA
BBD90706.1|2202433_2203402_-	ribonucleoside-diphosphate reductase minor subunit	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	96.9	3.8e-180
BBD90707.1|2203522_2205628_-	ribonuceloside diphosphate reductase major subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	95.9	0.0e+00
BBD90708.1|2205590_2205989_-	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	88.6	1.0e-62
BBD90709.1|2207018_2207885_+	putative transporter	NA	NA	NA	NA	NA
BBD90710.1|2207898_2208399_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	72.3	4.5e-52
>prophage 9
AP018585	Staphylococcus caprae JMUB145 DNA, complete genome	2618380	2226439	2235427	2618380	transposase	Pandoravirus(12.5%)	11	NA	NA
BBD90724.1|2226439_2227600_-	para-aminobenzoate synthase component I	NA	A0A0B5J984	Pandoravirus	35.7	3.4e-26
BBD90725.1|2227589_2228177_-	para-aminobenzoate synthetase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.7	4.4e-38
BBD90726.1|2228483_2229155_+	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.3	2.2e-65
BBD90727.1|2229156_2229576_+	6-pyruvoyl tetrahydropterin synthase	NA	S4U060	uncultured_phage	23.5	2.4e-06
BBD90728.1|2229579_2230293_+	coenzyme PQQ synthesis homologue	NA	A0A1U9WRB6	Streptococcus_virus	42.7	2.1e-50
BBD90729.1|2230417_2231590_-|transposase	transposase for IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
BBD90730.1|2231721_2232321_+	hypothetical protein	NA	NA	NA	NA	NA
BBD90731.1|2232740_2233178_+	putative lipoprotein	NA	NA	NA	NA	NA
BBD90732.1|2233231_2233705_+	putative thiosulfate dehydrogenase [quinone] large subunit	NA	NA	NA	NA	NA
BBD90733.1|2233679_2234369_+	response regulator saeR	NA	W8CYM9	Bacillus_phage	37.0	3.7e-36
BBD90734.1|2234371_2235427_+	histidine protein kinase saeS	NA	A0A1V0SGX0	Hokovirus	30.4	2.8e-19
