assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003966425.1_ASM396642v1	AP018796	Escherichia coli E2855 DNA, complete genome	1	3512152-3512424	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	NA,NA	NA|254aa|up_9|AP018796.1_3503964_3504726_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|AP018796.1_3504706_3505756_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|AP018796.1_3505752_3506232_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|AP018796.1_3506231_3506942_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|AP018796.1_3506960_3507272_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|AP018796.1_3507465_3507789_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|AP018796.1_3507838_3508444_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|AP018796.1_3508443_3509871_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|AP018796.1_3509872_3510781_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|AP018796.1_3511032_3512070_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|AP018796.1_3512520_3512814_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|AP018796.1_3512813_3513734_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|AP018796.1_3513730_3514381_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|AP018796.1_3514362_3515109_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|AP018796.1_3515119_3516175_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|AP018796.1_3516186_3516726_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|AP018796.1_3516722_3518285_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|AP018796.1_3518382_3521082_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|AP018796.1_3521275_3521428_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|AP018796.1_3521692_3522427_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_003966425.1_ASM396642v1	AP018796	Escherichia coli E2855 DNA, complete genome	2	3538126-3538520	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,27,28	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	NA,NA|47aa|down_1|AP018796.1_3539669_3539810_+	NA|424aa|up_9|AP018796.1_3526770_3528042_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|AP018796.1_3528032_3528293_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|AP018796.1_3528309_3528885_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|AP018796.1_3529032_3529893_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|AP018796.1_3529889_3530669_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|AP018796.1_3530646_3532056_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|AP018796.1_3532077_3533532_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|AP018796.1_3533601_3534387_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|AP018796.1_3534705_3535983_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|AP018796.1_3536008_3537487_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|AP018796.1_3538859_3539531_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|AP018796.1_3539669_3539810_+	NA	NA|291aa|down_2|AP018796.1_3539823_3540696_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|AP018796.1_3540755_3542054_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|AP018796.1_3542141_3543779_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|AP018796.1_3544006_3544798_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|AP018796.1_3544868_3545204_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|AP018796.1_3545203_3545452_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|AP018796.1_3545529_3547764_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|161aa|down_9|AP018796.1_3547811_3548294_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCA_003966425.1_ASM396642v1	AP018798	Escherichia coli E2855 plasmid pE2855-2 DNA, complete genome	1	54017-54124	1	PILER-CR	no			Orphan	ACAGTCAACATAAAATCGCGTACAGTCAATGTT	33	1	4	54093-54105|54093-54105|54093-54105|54093-54105	AP018797.1_29997-30009|AP018799.1_86042-86030|AP018800.1_13479-13491|AP018801.1_62292-62280	NA	2	2	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	NA|117aa|up_9|AP018798.1_44549_44900_-,NA|57aa|up_8|AP018798.1_44842_45013_-,NA|272aa|up_7|AP018798.1_45165_45981_-,NA|530aa|up_6|AP018798.1_45990_47580_-,NA|569aa|up_5|AP018798.1_47640_49347_-,NA|124aa|up_2|AP018798.1_51954_52326_-,NA|295aa|up_0|AP018798.1_53056_53941_-,NA|131aa|down_0|AP018798.1_54274_54667_-,NA|141aa|down_1|AP018798.1_54844_55267_-,NA|122aa|down_4|AP018798.1_56844_57210_-,NA|227aa|down_5|AP018798.1_57244_57925_-,NA|95aa|down_6|AP018798.1_58387_58672_+,NA|43aa|down_9|AP018798.1_64009_64138_+	NA|117aa|up_9|AP018798.1_44549_44900_-	NA	NA|57aa|up_8|AP018798.1_44842_45013_-	NA	NA|272aa|up_7|AP018798.1_45165_45981_-	NA	NA|530aa|up_6|AP018798.1_45990_47580_-	NA	NA|569aa|up_5|AP018798.1_47640_49347_-	NA	NA|334aa|up_4|AP018798.1_49571_50573_-	pfam08775, ParB, ParB family	NA|399aa|up_3|AP018798.1_50589_51786_-	pfam18607, HTH_54, ParA helix turn helix domain	NA|124aa|up_2|AP018798.1_51954_52326_-	NA	NA|112aa|up_1|AP018798.1_52428_52764_-	pfam10544, T5orf172, T5orf172 domain	NA|295aa|up_0|AP018798.1_53056_53941_-	NA	NA|131aa|down_0|AP018798.1_54274_54667_-	NA	NA|141aa|down_1|AP018798.1_54844_55267_-	NA	NA|136aa|down_2|AP018798.1_55656_56064_-	pfam04986, Y2_Tnp, Putative transposase	NA|272aa|down_3|AP018798.1_56029_56845_-	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|122aa|down_4|AP018798.1_56844_57210_-	NA	NA|227aa|down_5|AP018798.1_57244_57925_-	NA	NA|95aa|down_6|AP018798.1_58387_58672_+	NA	NA|302aa|down_7|AP018798.1_58664_59570_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|1096aa|down_8|AP018798.1_59566_62854_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|43aa|down_9|AP018798.1_64009_64138_+	NA
