The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	0	12876	2666426		Moumouvirus(100.0%)	10	NA	NA
AYX88745.1|474_1620_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AYX88746.1|2114_3353_+	aminoacyltransferase	NA	NA	NA	NA	NA
AYX88747.1|4067_4802_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA	NA
AYX88748.1|4978_6814_+	assimilatory sulfite reductase (NADPH) flavoprotein subunit	NA	NA	NA	NA	NA
AYX88749.1|6830_8540_+	NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA	NA	NA	NA	NA
AYX88750.1|8563_9331_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AYX88751.1|9353_10088_+	sirohydrochlorin chelatase	NA	NA	NA	NA	NA
AYX88752.1|10132_10744_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
AYX88753.1|10767_11673_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AYX88754.1|11694_12876_+	sulfate adenylyltransferase	NA	A0A2P1ELS9	Moumouvirus	33.0	2.0e-53
>prophage 2
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	26667	33359	2666426		Staphylococcus_phage(33.33%)	6	NA	NA
AYX88770.1|26667_28245_+	acyl--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	35.2	1.0e-73
AYX88771.1|28386_28998_-	hypothetical protein	NA	NA	NA	NA	NA
AYX88772.1|29254_30283_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYX88773.1|30279_30960_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.7	4.7e-36
AYX88774.1|30956_32132_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
AYX88775.1|32513_33359_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.1	4.9e-14
>prophage 3
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	43510	44023	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX88784.1|43510_44023_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	68.8	1.3e-57
>prophage 4
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	53908	54142	2666426		Staphylococcus_virus(100.0%)	1	NA	NA
AYX88794.1|53908_54142_-	hypothetical protein	NA	Q4ZCB8	Staphylococcus_virus	59.7	3.6e-20
>prophage 5
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	62819	63557	2666426		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AYX88807.1|62819_63557_-	hypothetical protein	NA	A0A2H4JHA0	uncultured_Caudovirales_phage	41.5	6.1e-37
>prophage 6
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	71867	77160	2666426		Enterococcus_phage(33.33%)	4	NA	NA
AYX88818.1|71867_73391_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.8	3.1e-43
AYX88819.1|73407_73977_-	peroxiredoxin	NA	NA	NA	NA	NA
AYX88820.1|74538_74889_-	XRE family transcriptional regulator	NA	A0A0A7RUJ5	Clostridium_phage	38.8	2.1e-08
AYX88821.1|75168_77160_-	catalase	NA	A0A2K9L572	Tupanvirus	48.0	5.0e-142
>prophage 7
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	89388	93800	2666426		Klosneuvirus(33.33%)	4	NA	NA
AYX88831.1|89388_90855_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	1.5e-95
AYX88832.1|90876_92418_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.1	1.0e-22
AYX88833.1|92569_92758_-	hypothetical protein	NA	NA	NA	NA	NA
AYX88834.1|93560_93800_-	hypothetical protein	NA	Q4ZCB8	Staphylococcus_virus	65.8	1.6e-23
>prophage 8
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	102807	103008	2666426		Lactococcus_phage(100.0%)	1	NA	NA
AYX88846.1|102807_103008_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	1.0e-18
>prophage 9
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	139711	141618	2666426		Moumouvirus(50.0%)	2	NA	NA
AYX88868.1|139711_140491_+	arylamine N-acetyltransferase	NA	M1PG53	Moumouvirus	27.5	9.1e-07
AYX88869.1|140652_141618_+	LysM peptidoglycan-binding domain-containing protein	NA	Q6A204	Oenococcus_phage	60.4	6.1e-21
>prophage 10
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	158511	160811	2666426		Bacillus_phage(50.0%)	2	NA	NA
AYX88881.1|158511_159042_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	34.9	9.4e-24
AYX88882.1|159101_160811_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	41.9	4.0e-55
>prophage 11
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	169281	169899	2666426		Streptococcus_phage(100.0%)	1	NA	NA
AYX88885.1|169281_169899_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.4	1.7e-45
>prophage 12
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	173552	176662	2666426	tRNA	Streptococcus_phage(50.0%)	2	NA	NA
AYX88892.1|173552_174386_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.1	9.5e-55
AYX88893.1|174688_176662_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	33.6	9.1e-96
>prophage 13
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	180610	187293	2666426	transposase	Paenibacillus_phage(50.0%)	9	NA	NA
AYX88899.1|180610_181435_+	pur operon repressor	NA	A0A1V0SKE5	Klosneuvirus	23.6	6.2e-06
AYX88900.1|181452_181827_+	RidA family protein	NA	NA	NA	NA	NA
AYX88901.1|181897_182206_+	septation protein SpoVG	NA	NA	NA	NA	NA
AYX88902.1|182631_182796_-	hypothetical protein	NA	NA	NA	NA	NA
AYX88903.1|182731_182962_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	58.9	9.4e-13
AYX88904.1|183118_183481_-|transposase	transposase	transposase	NA	NA	NA	NA
AYX88905.1|183600_184008_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.5	7.0e-11
AYX88906.1|184829_186185_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	NA	NA	NA	NA
AYX88907.1|186327_187293_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.5	9.1e-49
>prophage 14
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	197765	206998	2666426	tRNA	uncultured_virus(25.0%)	8	NA	NA
AYX88916.1|197765_198305_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.0	4.6e-10
AYX88917.1|198589_200704_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	G8DDJ2	Micromonas_pusilla_virus	47.8	8.5e-108
AYX88918.1|200916_201795_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
AYX88919.1|201951_202884_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	64.4	3.5e-106
AYX88920.1|203328_204132_+	dihydropteroate synthase	NA	NA	NA	NA	NA
AYX88921.1|204109_204475_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AYX88922.1|204474_204954_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AYX88923.1|205510_206998_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	42.1	1.3e-91
>prophage 15
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	219100	220477	2666426		Streptococcus_phage(100.0%)	1	NA	NA
AYX88924.1|219100_220477_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.2	2.3e-21
>prophage 16
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	225529	227986	2666426	protease	Enterobacteria_phage(100.0%)	1	NA	NA
AYX88931.1|225529_227986_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	40.1	3.7e-131
>prophage 17
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	233680	238538	2666426	tRNA	Catovirus(50.0%)	8	NA	NA
AYX88935.1|233680_235081_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	1.7e-59
AYX88936.1|235082_235469_+	ribonuclease III	NA	NA	NA	NA	NA
AYX88937.1|235476_236226_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
AYX88938.1|236222_236747_+	NYN domain-containing protein	NA	NA	NA	NA	NA
AYX88939.1|236820_237402_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYX88940.1|237524_237668_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AYX88941.1|237795_237975_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AYX88942.1|237989_238538_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	32.3	1.9e-11
>prophage 18
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	242447	257684	2666426		uncultured_Mediterranean_phage(25.0%)	9	NA	NA
AYX88948.1|242447_245999_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	23.4	3.0e-49
AYX88949.1|246142_249763_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.5	8.9e-65
AYX88950.1|250048_250303_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
AYX88951.1|250398_250812_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
AYX88952.1|250883_251354_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
AYX88953.1|251472_253566_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.3	1.7e-60
AYX88954.1|253781_254969_+	elongation factor Tu	NA	NA	NA	NA	NA
AYX88955.1|255133_256306_-	amidohydrolase	NA	NA	NA	NA	NA
AYX88956.1|256496_257684_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	31.0	1.2e-45
>prophage 19
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	265226	267605	2666426		Klosneuvirus(50.0%)	2	NA	NA
AYX88964.1|265226_266192_+	ornithine cyclodeaminase family protein	NA	A0A1V0SL93	Klosneuvirus	31.2	2.4e-17
AYX88965.1|266663_267605_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.8	1.7e-52
>prophage 20
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	287024	287687	2666426		Enterococcus_phage(100.0%)	1	NA	NA
AYX88982.1|287024_287687_-	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	35.1	3.7e-25
>prophage 21
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	300324	301737	2666426		Burkholderia_virus(100.0%)	1	NA	NA
AYX88999.1|300324_301737_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.9	8.6e-56
>prophage 22
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	304881	305538	2666426		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
AYX89003.1|304881_305538_+	uracil-DNA glycosylase	NA	U5U481	Elephant_endotheliotropic_herpesvirus	44.1	1.6e-44
>prophage 23
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	317380	318163	2666426		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AYX89015.1|317380_318163_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.6	1.1e-20
>prophage 24
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	325804	327103	2666426		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
AYX89021.1|325804_327103_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.1	6.7e-23
>prophage 25
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	339090	340635	2666426	transposase	Paenibacillus_phage(100.0%)	3	NA	NA
AYX89036.1|339090_339426_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	46.9	1.9e-14
AYX89037.1|339308_339947_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	55.2	4.2e-26
AYX89038.1|340068_340635_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	33.9	7.5e-11
>prophage 26
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	354142	354877	2666426		Indivirus(100.0%)	1	NA	NA
AYX89054.1|354142_354877_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.9	1.8e-12
>prophage 27
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	362051	370027	2666426		Streptomyces_phage(25.0%)	6	NA	NA
AYX89062.1|362051_362450_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	40.6	2.2e-17
AYX89063.1|362652_363945_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AYX89064.1|364186_365905_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	41.9	4.8e-109
AYX89065.1|366243_367473_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
AYX89066.1|368073_368910_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	36.5	4.9e-43
AYX89067.1|369223_370027_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	29.1	5.5e-15
>prophage 28
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	376716	377748	2666426		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
AYX89074.1|376716_377748_+	alpha/beta hydrolase	NA	A0A0G2Y6Q1	Acanthamoeba_polyphaga_mimivirus	24.9	2.0e-14
>prophage 29
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	384337	391684	2666426	transposase	Paenibacillus_phage(40.0%)	9	NA	NA
AYX89081.1|384337_385147_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A141HSE6	Bacillus_phage	33.6	8.8e-05
AYX89082.1|385598_386261_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89083.1|386715_387072_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYX89084.1|387264_387930_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	36.0	1.9e-21
AYX89085.1|388221_388329_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89086.1|388335_388806_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	47.2	4.3e-28
AYX89087.1|389279_389996_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AYX89088.1|389997_390501_+	cupin domain-containing protein	NA	A0A291ATU0	Pandoravirus	35.4	1.1e-16
AYX89089.1|390571_391684_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	43.0	2.3e-80
>prophage 30
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	399659	410516	2666426	transposase	Paenibacillus_phage(50.0%)	11	NA	NA
AYX89099.1|399659_400325_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	36.0	1.9e-21
AYX89100.1|400496_400724_+|transposase	transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	59.2	2.7e-12
AYX89101.1|400865_401096_+	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	58.9	9.4e-13
AYX89102.1|401616_403068_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AYX89103.1|403380_403998_+	amino acid transporter	NA	NA	NA	NA	NA
AYX89104.1|404055_404622_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	34.7	3.4e-19
AYX89105.1|404625_405090_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
AYX89106.1|405095_405797_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89107.1|405956_406832_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AYX89108.1|407217_408843_+	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	26.3	3.1e-09
AYX89109.1|408839_410516_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	22.6	4.6e-16
>prophage 31
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	420426	421296	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX89121.1|420426_421296_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.5	1.9e-77
>prophage 32
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	429449	437384	2666426		Staphylococcus_phage(16.67%)	9	NA	NA
AYX89129.1|429449_430289_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.7	3.8e-51
AYX89130.1|430820_431912_+	glycosyltransferase	NA	A0A192Y8W7	Salmonella_phage	41.5	2.2e-59
AYX89131.1|432455_432710_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AYX89132.1|432773_433367_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89133.1|433609_434326_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.1	8.5e-52
AYX89134.1|434318_434744_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AYX89135.1|434745_435417_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.3	2.8e-65
AYX89136.1|435667_436261_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	3.5e-35
AYX89137.1|436244_437384_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.8	5.2e-27
>prophage 33
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	441086	466733	2666426		uncultured_Caudovirales_phage(31.25%)	19	NA	NA
AYX89141.1|441086_443027_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	39.7	4.1e-109
AYX89142.1|443558_444377_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AYX89143.1|444489_446370_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	1.8e-56
AYX89144.1|446383_448162_+	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	38.1	7.7e-78
AYX89145.1|448449_449412_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	1.7e-26
AYX89146.1|449408_450923_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
AYX89147.1|451112_452168_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.4	1.0e-24
AYX89148.1|452398_452947_+	5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	38.4	1.3e-28
AYX89149.1|453157_454099_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.1	2.1e-10
AYX89150.1|454314_455823_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.7	1.5e-69
AYX89151.1|456084_457599_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.8	3.9e-70
AYX89152.1|457778_458279_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	9.1e-53
AYX89153.1|458292_459180_-	DMT family transporter	NA	NA	NA	NA	NA
AYX89154.1|459890_460289_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	73.5	2.3e-51
AYX89155.1|460251_462357_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.0	0.0e+00
AYX89156.1|462593_463562_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	93.8	1.8e-174
AYX89157.1|464018_464987_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.3	9.8e-136
AYX89158.1|464976_465936_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	50.0	4.7e-05
AYX89159.1|465932_466733_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	29.9	3.5e-14
>prophage 34
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	476956	477271	2666426	transposase	Staphylococcus_prophage(100.0%)	1	NA	NA
AYX89171.1|476956_477271_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	69.7	3.5e-34
>prophage 35
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	480372	482015	2666426		Streptococcus_phage(50.0%)	2	NA	NA
AYX89174.1|480372_481014_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	44.3	5.6e-39
AYX89175.1|481151_482015_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	38.6	1.6e-17
>prophage 36
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	489434	490391	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX89179.1|489434_490391_+	CHAP domain-containing protein	NA	A0A220BYJ8	Staphylococcus_phage	39.3	2.8e-10
>prophage 37
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	493912	496750	2666426		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AYX89183.1|493912_496750_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.0	1.0e-310
>prophage 38
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	500883	553247	2666426	terminase,coat,integrase	uncultured_Caudovirales_phage(41.38%)	63	519927:519947	550661:550681
AYX89188.1|500883_501828_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	48.9	5.2e-81
AYX89189.1|502322_503249_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	32.6	2.0e-08
AYX89190.1|503235_504222_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.5	4.9e-50
AYX89191.1|504273_505218_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.3	7.0e-54
AYX89192.1|505561_506407_+	YitT family protein	NA	NA	NA	NA	NA
AYX89193.1|506799_507849_-|integrase	site-specific integrase	integrase	U3PJ31	Staphylococcus_phage	40.4	2.5e-68
AYX89194.1|507835_508489_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYX89195.1|508634_508844_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYX89196.1|508845_509469_+	phage repressor protein	NA	A0A1W6JPC3	Staphylococcus_phage	55.3	9.0e-58
AYX89197.1|509485_509746_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
AYX89198.1|509755_509938_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89199.1|509975_510173_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89200.1|510172_510370_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	45.8	1.6e-08
AYX89201.1|510371_510677_+	DUF1474 family protein	NA	A0A2H4JB50	uncultured_Caudovirales_phage	38.8	3.6e-12
AYX89202.1|510783_513126_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.9	1.6e-131
AYX89203.1|513652_514117_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89204.1|514287_514926_+	hypothetical protein	NA	A0A2H4JFF8	uncultured_Caudovirales_phage	53.8	3.1e-53
AYX89205.1|514938_515394_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89206.1|516871_517492_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	55.3	1.7e-19
AYX89207.1|517475_517673_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89208.1|517823_518330_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4J4D1	uncultured_Caudovirales_phage	62.3	1.1e-48
AYX89209.1|518672_519209_+|coat	spore coat protein	coat	A0A2H4JB26	uncultured_Caudovirales_phage	52.0	1.5e-45
AYX89210.1|519205_519532_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89211.1|519524_519872_+	hypothetical protein	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	37.8	1.2e-11
519927:519947	attL	AGACGACTTTTAAAGTCGTCT	NA	NA	NA	NA
AYX89212.1|520267_520459_+	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	90.0	9.5e-27
AYX89213.1|520540_520867_+	DUF1722 domain-containing protein	NA	NA	NA	NA	NA
AYX89214.1|520994_521174_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89215.1|522856_523441_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.8	2.2e-53
AYX89216.1|523583_523772_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89217.1|523789_524686_-	TIGR01777 family protein	NA	NA	NA	NA	NA
AYX89218.1|525049_525238_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89219.1|525514_526177_+	DUF4887 domain-containing protein	NA	NA	NA	NA	NA
AYX89220.1|526317_526545_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89221.1|526897_527926_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89222.1|527965_528973_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYX89223.1|529102_530293_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYX89224.1|530357_531119_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AYX89225.1|531120_532638_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
AYX89226.1|532830_534135_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	77.8	4.6e-189
AYX89227.1|534356_534818_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89228.1|534886_535120_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AYX89229.1|535260_536001_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AYX89230.1|536036_538409_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.3	1.4e-90
AYX89231.1|538431_538896_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	89.0	1.8e-71
AYX89232.1|539462_540569_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	42.7	1.4e-74
AYX89233.1|540578_541349_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYX89234.1|541501_541720_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYX89235.1|541732_541912_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89236.1|541913_542315_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89237.1|542326_542629_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	52.2	2.4e-16
AYX89238.1|542729_543614_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	49.5	1.9e-77
AYX89239.1|543627_545346_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	43.6	1.9e-129
AYX89240.1|545663_546128_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89241.1|546140_546350_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89242.1|546309_546948_+	hypothetical protein	NA	A0A2H4JFF8	uncultured_Caudovirales_phage	52.8	5.8e-52
AYX89243.1|546960_547416_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89244.1|548769_549276_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4J4D1	uncultured_Caudovirales_phage	63.6	1.1e-48
AYX89245.1|549406_549943_+|coat	spore coat protein	coat	A0A2H4JB26	uncultured_Caudovirales_phage	52.8	6.8e-46
AYX89246.1|549939_550266_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89247.1|550258_550606_+	hypothetical protein	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	37.8	9.2e-12
AYX89248.1|551007_551400_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	61.2	1.7e-41
550661:550681	attR	AGACGACTTTAAAAGTCGTCT	NA	NA	NA	NA
AYX89249.1|551459_552257_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89250.1|552536_553247_-	hypothetical protein	NA	A0A1J0MFV9	Staphylococcus_phage	69.2	5.5e-11
>prophage 39
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	558368	562912	2666426	transposase	Paenibacillus_phage(40.0%)	7	NA	NA
AYX89256.1|558368_558971_-	hypothetical protein	NA	A0A1D6Z277	Staphylococcus_phage	66.7	7.2e-12
AYX89257.1|559190_559586_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYX89258.1|559610_560030_+	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	63.2	2.0e-37
AYX89259.1|560042_560492_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYX89260.1|560874_561279_-	hypothetical protein	NA	A0A0A1ERB0	Lactobacillus_phage	68.6	7.0e-11
AYX89261.1|561370_562075_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	50.0	1.5e-48
AYX89262.1|562345_562912_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	33.9	7.5e-11
>prophage 40
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	570813	572880	2666426		Streptococcus_phage(100.0%)	1	NA	NA
AYX89270.1|570813_572880_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.6	1.8e-65
>prophage 41
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	590760	594358	2666426		Staphylococcus_phage(50.0%)	6	NA	NA
AYX89294.1|590760_591081_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	34.8	6.3e-07
AYX89295.1|591224_591578_+	arsenate reductase family protein	NA	NA	NA	NA	NA
AYX89296.1|591758_592139_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
AYX89297.1|592403_592796_+	topiosmerase	NA	NA	NA	NA	NA
AYX89298.1|592792_593092_+	thioredoxin	NA	NA	NA	NA	NA
AYX89299.1|593332_594358_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	8.5e-29
>prophage 42
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	597827	643215	2666426	portal,head,integrase,tail,holin,terminase,capsid,protease	uncultured_Caudovirales_phage(50.98%)	62	598289:598304	610390:610405
AYX89303.1|597827_598589_+	Fe-S cluster assembly ATPase SufC	NA	A0A285PWH2	Cedratvirus	26.7	6.5e-10
598289:598304	attL	TAATGAAATTCTTCAA	NA	NA	NA	NA
AYX89304.1|598689_599997_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
AYX89305.1|600159_601407_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	43.6	2.3e-105
AYX89306.1|601396_601846_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
AYX89307.1|601973_603371_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
AYX89308.1|603439_604498_-|integrase	site-specific integrase	integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	78.4	3.1e-159
AYX89309.1|605236_605728_-	hypothetical protein	NA	A0A0D4DCT6	Staphylococcus_phage	64.5	7.9e-49
AYX89310.1|605743_606208_-	toxin	NA	A0A0K1LL33	Staphylococcus_phage	62.7	2.2e-56
AYX89311.1|606219_606552_-	XRE family transcriptional regulator	NA	A0A2H4JC44	uncultured_Caudovirales_phage	89.1	3.2e-46
AYX89312.1|606745_606997_+	XRE family transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	92.1	1.1e-35
AYX89313.1|606997_607810_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	60.3	3.0e-37
AYX89314.1|607813_608662_+	hypothetical protein	NA	A0A141E1C9	Streptococcus_phage	30.5	1.6e-28
AYX89315.1|608819_609032_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89316.1|609028_609238_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89317.1|609314_609521_+	hypothetical protein	NA	A0A2H4J149	uncultured_Caudovirales_phage	45.6	9.3e-12
AYX89318.1|609763_610018_+	hypothetical protein	NA	A0A2H4J1Y9	uncultured_Caudovirales_phage	67.9	3.5e-24
AYX89319.1|610010_610658_+	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	71.2	2.4e-85
610390:610405	attR	TAATGAAATTCTTCAA	NA	NA	NA	NA
AYX89320.1|610660_611101_+	single-stranded DNA-binding protein	NA	Q4ZCA0	Staphylococcus_virus	75.7	3.9e-55
AYX91142.1|611129_611801_+	hypothetical protein	NA	A0A1W6JQB0	Staphylococcus_phage	96.4	1.3e-123
AYX89321.1|611797_612550_+	DnaD domain protein	NA	A0A2H4JAA4	uncultured_Caudovirales_phage	80.4	5.3e-113
AYX89322.1|612555_612924_+	hypothetical protein	NA	A0A2H4J7Z2	uncultured_Caudovirales_phage	73.1	8.8e-45
AYX89323.1|612913_614149_+	damage-inducible protein	NA	A0A2H4JB46	uncultured_Caudovirales_phage	77.4	6.1e-183
AYX89324.1|614145_614352_+	hypothetical protein	NA	A0A1W6JQ40	Staphylococcus_phage	83.6	6.0e-27
AYX89325.1|614342_614579_+	DUF3269 family protein	NA	A0A2H4J2U2	uncultured_Caudovirales_phage	79.5	7.1e-32
AYX89326.1|614589_615003_+	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	58.4	3.6e-39
AYX89327.1|614995_615193_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89328.1|615194_615596_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89329.1|615607_615826_+	hypothetical protein	NA	NA	NA	NA	NA
AYX91143.1|615901_616309_+	DUF3310 domain-containing protein	NA	A0A2H4J984	uncultured_Caudovirales_phage	61.5	2.0e-53
AYX89330.1|616309_616615_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	98.0	1.1e-48
AYX89331.1|616611_616812_+	hypothetical protein	NA	A0A2H4JAZ1	uncultured_Caudovirales_phage	84.4	6.0e-24
AYX89332.1|616814_617090_+	hypothetical protein	NA	A0A1W6JQ72	Staphylococcus_phage	89.2	8.6e-29
AYX89333.1|617090_617339_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89334.1|617335_617758_+	dUTP diphosphatase	NA	Q4ZC82	Staphylococcus_virus	79.1	4.4e-56
AYX89335.1|617805_618036_+	DUF1381 domain-containing protein	NA	A0A2H4JGT2	uncultured_Caudovirales_phage	63.2	1.1e-16
AYX89336.1|618037_618271_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89337.1|618272_618407_+	transcriptional regulator	NA	A0A2H4JAX0	uncultured_Caudovirales_phage	79.5	3.3e-10
AYX89338.1|618406_618634_+	hypothetical protein	NA	A0A2H4JCT1	uncultured_Caudovirales_phage	84.0	1.2e-28
AYX89339.1|618647_619043_+	hypothetical protein	NA	A0A1W6JQ60	Staphylococcus_phage	93.9	6.9e-64
AYX89340.1|619321_619636_+	HNH endonuclease	NA	D2XR61	Bacillus_phage	41.3	2.8e-15
AYX89341.1|619820_620183_+	hypothetical protein	NA	A0A2H4JAH7	uncultured_Caudovirales_phage	56.2	5.1e-29
AYX89342.1|620179_621850_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	60.6	1.6e-197
AYX89343.1|621865_623044_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	51.3	4.3e-109
AYX89344.1|623006_623714_+|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	46.7	3.0e-41
AYX89345.1|623725_624919_+|capsid	phage major capsid protein	capsid	Q4ZD74	Staphylococcus_phage	45.2	3.9e-86
AYX89346.1|624933_625221_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4J447	uncultured_Caudovirales_phage	55.6	1.4e-18
AYX89347.1|625204_625573_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89348.1|625562_625952_+	hypothetical protein	NA	A0A2H4JF04	uncultured_Caudovirales_phage	55.3	1.8e-35
AYX89349.1|625957_626380_+	hypothetical protein	NA	A0A2H4JBV0	uncultured_Caudovirales_phage	42.5	2.9e-23
AYX89350.1|626379_626976_+|tail	phage tail protein	tail	A0A2H4JH93	uncultured_Caudovirales_phage	55.6	8.3e-53
AYX89351.1|626994_627192_+	hypothetical protein	NA	A0A0N9STM6	Staphylococcus_phage	65.5	3.1e-12
AYX89352.1|627261_627621_+	hypothetical protein	NA	A0A1D6Z288	Staphylococcus_phage	39.2	3.2e-15
AYX89353.1|627636_628158_+	hypothetical protein	NA	A0A1D6Z284	Staphylococcus_phage	30.6	9.0e-19
AYX89354.1|628299_633405_+|tail	phage tail tape measure protein	tail	A0A2H4J669	uncultured_Caudovirales_phage	53.2	2.2e-202
AYX91144.1|633438_634260_+|tail	phage tail family protein	tail	A0A2H4JGY6	uncultured_Caudovirales_phage	62.2	1.0e-93
AYX89355.1|634272_636189_+	hypothetical protein	NA	Q4ZCC6	Staphylococcus_virus	43.5	1.5e-143
AYX89356.1|636250_638707_+	hypothetical protein	NA	U3PDY0	Staphylococcus_phage	72.7	4.8e-256
AYX89357.1|638883_639306_+	hypothetical protein	NA	A0A2H4JID2	uncultured_Caudovirales_phage	76.4	3.6e-58
AYX89358.1|639292_639691_+	hypothetical protein	NA	A0A2H4JCM1	uncultured_Caudovirales_phage	86.4	8.9e-59
AYX89359.1|639796_640279_+|holin	phage holin	holin	U3PJ27	Staphylococcus_phage	80.0	2.9e-48
AYX89360.1|640265_641744_+	CHAP domain-containing protein	NA	A0A249Y173	Staphylococcus_phage	60.0	8.1e-166
AYX89361.1|641811_643215_+	hypothetical protein	NA	A0A1W6JPH3	Staphylococcus_phage	37.3	1.7e-56
>prophage 43
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	646406	648092	2666426		Golden_Marseillevirus(50.0%)	2	NA	NA
AYX89364.1|646406_647255_+	DUF72 domain-containing protein	NA	A0A1D6Y809	Golden_Marseillevirus	27.6	1.4e-13
AYX89365.1|647267_648092_+	sulfite exporter TauE/SafE family protein	NA	A0A2K9L458	Tupanvirus	29.1	9.0e-05
>prophage 44
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	652916	657146	2666426		uncultured_Mediterranean_phage(50.0%)	3	NA	NA
AYX89371.1|652916_653876_+	D-glycerate dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	28.2	2.2e-23
AYX89372.1|654310_654457_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
AYX89373.1|655931_657146_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.9	6.5e-20
>prophage 45
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	661208	664671	2666426		Lake_Baikal_phage(50.0%)	3	NA	NA
AYX89380.1|661208_661568_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	39.4	8.4e-16
AYX89381.1|661803_663012_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AYX89382.1|663195_664671_+	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	34.8	2.2e-46
>prophage 46
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	674878	684088	2666426		Staphylococcus_phage(66.67%)	9	NA	NA
AYX89394.1|674878_675475_+	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	38.6	8.1e-24
AYX89395.1|675904_676306_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
AYX89396.1|676485_677619_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
AYX89397.1|678183_679374_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.6	1.0e-33
AYX89398.1|679481_680726_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AYX89399.1|680789_681776_-	glycerophosphodiester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	39.2	4.6e-40
AYX89400.1|682068_682464_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	80.9	3.0e-59
AYX89401.1|682481_683771_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	82.8	2.4e-190
AYX89402.1|683773_684088_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	68.3	5.9e-34
>prophage 47
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	694390	698062	2666426		Bacillus_virus(100.0%)	1	NA	NA
AYX89410.1|694390_698062_+	helicase-exonuclease AddAB subunit AddA	NA	G3MA40	Bacillus_virus	24.6	1.2e-19
>prophage 48
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	703997	709400	2666426		Pseudomonas_phage(50.0%)	3	NA	NA
AYX89417.1|703997_705821_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	32.8	3.7e-35
AYX89418.1|706053_706473_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AYX89419.1|706790_709400_+	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	36.2	1.6e-119
>prophage 49
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	716470	718487	2666426		Planktothrix_phage(100.0%)	2	NA	NA
AYX89427.1|716470_717556_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.7	1.7e-19
AYX89428.1|717542_718487_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	3.9e-20
>prophage 50
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	724428	728630	2666426	transposase	Paenibacillus_phage(75.0%)	4	NA	NA
AYX89435.1|724428_726237_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	25.7	4.5e-49
AYX89436.1|727088_727808_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	34.8	4.7e-18
AYX89437.1|727777_728230_+|transposase	transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	58.2	5.1e-18
AYX89438.1|728297_728630_+	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	46.9	1.5e-14
>prophage 51
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	747237	751896	2666426	protease	Tupanvirus(33.33%)	3	NA	NA
AYX89456.1|747237_748800_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	35.5	6.2e-15
AYX89457.1|749166_749964_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.1	4.6e-30
AYX89458.1|750153_751896_+|protease	serine protease	protease	W5SAB9	Pithovirus	26.5	4.5e-06
>prophage 52
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	772167	782849	2666426	transposase	Paenibacillus_phage(50.0%)	7	NA	NA
AYX89478.1|772167_772398_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	58.9	9.4e-13
AYX89479.1|773038_773605_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	33.9	7.5e-11
AYX89480.1|773992_778198_-	autolysin	NA	Q4ZE13	Staphylococcus_virus	46.0	1.0e-51
AYX89481.1|778433_778856_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYX89482.1|778934_779405_-	DUF2538 family protein	NA	NA	NA	NA	NA
AYX89483.1|779427_780729_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
AYX89484.1|781190_782849_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	36.9	4.9e-95
>prophage 53
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	790817	810456	2666426		Synechococcus_phage(18.18%)	18	NA	NA
AYX89491.1|790817_791675_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.4	3.2e-37
AYX89492.1|791879_792362_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.9e-19
AYX89493.1|792348_793482_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AYX89494.1|793481_794183_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	40.3	4.9e-44
AYX89495.1|794184_794445_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AYX89496.1|794444_795116_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AYX89497.1|795108_797298_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	38.8	4.9e-135
AYX89498.1|797276_798764_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.1	3.6e-44
AYX89499.1|798756_799785_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	3.7e-64
AYX89500.1|799787_800354_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	8.0e-29
AYX89501.1|800369_801848_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	51.5	6.4e-78
AYX89502.1|801870_803115_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AYX89503.1|803323_804130_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
AYX89504.1|804122_805544_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.1	7.4e-15
AYX89505.1|805556_806132_-	thiamine ABC transporter permease	NA	NA	NA	NA	NA
AYX89506.1|806873_807167_+	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	47.8	4.0e-16
AYX89507.1|807764_809066_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89508.1|809286_810456_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	41.3	2.1e-71
>prophage 54
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	820555	829404	2666426		Synechococcus_phage(50.0%)	9	NA	NA
AYX89518.1|820555_821107_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	44.3	1.9e-14
AYX89519.1|821229_821856_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89520.1|822120_823233_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
AYX89521.1|823236_824214_+	alpha-ketoacid dehydrogenase subunit beta	NA	E3SJ83	Synechococcus_phage	25.5	3.0e-07
AYX89522.1|824355_825663_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
AYX89523.1|825666_827073_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.5	3.8e-48
AYX89524.1|827313_827592_+	UPF0223 family protein	NA	NA	NA	NA	NA
AYX89525.1|827758_828298_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYX89526.1|828309_829404_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	42.9	8.7e-40
>prophage 55
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	838777	840625	2666426		Erysipelothrix_phage(100.0%)	1	NA	NA
AYX89535.1|838777_840625_+	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	24.0	8.1e-22
>prophage 56
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	850777	857657	2666426		uncultured_Mediterranean_phage(66.67%)	8	NA	NA
AYX89544.1|850777_853033_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.1	2.5e-126
AYX89545.1|853213_854263_+	SCP-like extracellular protein	NA	NA	NA	NA	NA
AYX89546.1|854274_854709_+	YlbF family regulator	NA	NA	NA	NA	NA
AYX89547.1|854776_855703_-	glycerophosphodiester phosphodiesterase	NA	M1HYD2	Paramecium_bursaria_Chlorella_virus	27.1	3.1e-14
AYX89548.1|855834_856086_+	DUF2129 domain-containing protein	NA	NA	NA	NA	NA
AYX89549.1|856172_856562_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89550.1|856627_857170_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
AYX89551.1|857171_857657_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.4	2.7e-25
>prophage 57
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	862700	863759	2666426	tRNA	Orpheovirus(100.0%)	1	NA	NA
AYX89556.1|862700_863759_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.4	1.4e-29
>prophage 58
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	868389	872856	2666426		Bodo_saltans_virus(33.33%)	3	NA	NA
AYX91150.1|868389_870102_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	26.6	3.9e-18
AYX89561.1|870111_872460_+	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	23.6	3.9e-13
AYX89562.1|872541_872856_+	thiol reductase thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	48.5	1.3e-25
>prophage 59
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	900964	903715	2666426	tRNA	Orpheovirus(100.0%)	1	NA	NA
AYX89591.1|900964_903715_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.6	4.1e-86
>prophage 60
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	907708	912319	2666426		Enterobacteria_phage(33.33%)	4	NA	NA
AYX89596.1|907708_909016_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.0	2.2e-58
AYX89597.1|909046_909961_+	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	31.5	7.8e-26
AYX89598.1|909944_911219_+	dihydroorotase	NA	NA	NA	NA	NA
AYX89599.1|911218_912319_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.2	1.5e-63
>prophage 61
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	916400	917012	2666426		Prochlorococcus_phage(100.0%)	1	NA	NA
AYX89602.1|916400_917012_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	29.2	3.9e-05
>prophage 62
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	922972	925362	2666426		Abalone_herpesvirus(50.0%)	3	NA	NA
AYX89608.1|922972_923596_+	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.7	2.3e-21
AYX89609.1|923595_923796_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AYX89610.1|924159_925362_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.7	6.0e-42
>prophage 63
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	930408	931341	2666426	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
AYX91151.1|930408_931341_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	30.9	9.5e-11
>prophage 64
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	934493	936539	2666426		Moumouvirus(100.0%)	1	NA	NA
AYX89618.1|934493_936539_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	M1PCM5	Moumouvirus	33.3	1.4e-22
>prophage 65
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	949961	952053	2666426		Trichoplusia_ni_ascovirus(33.33%)	3	NA	NA
AYX89632.1|949961_950699_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.7	8.3e-18
AYX89633.1|950860_951094_+	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	61.7	2.1e-07
AYX89634.1|951318_952053_+	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	30.3	4.1e-25
>prophage 66
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	959109	960551	2666426	transposase	Paenibacillus_phage(100.0%)	3	NA	NA
AYX89639.1|959109_959538_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	54.0	9.0e-33
AYX89640.1|959541_959862_-|transposase	transposase	transposase	NA	NA	NA	NA
AYX89641.1|959831_960551_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.3	1.6e-18
>prophage 67
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	972672	983538	2666426	tRNA,protease	Chrysochromulina_ericina_virus(20.0%)	9	NA	NA
AYX89651.1|972672_973443_+	ribonuclease HII	NA	A0A0N9QYD4	Chrysochromulina_ericina_virus	37.7	8.1e-24
AYX89652.1|973550_974717_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
AYX89653.1|974738_975644_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
AYX89654.1|975870_976743_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AYX89655.1|976934_979001_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.1	9.2e-107
AYX89656.1|979150_980458_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
AYX89657.1|980577_981468_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.7	1.7e-25
AYX89658.1|981471_982014_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AYX89659.1|982125_983538_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDA3	Erwinia_phage	25.7	8.1e-30
>prophage 68
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	988122	988884	2666426		Flavobacterium_phage(100.0%)	1	NA	NA
AYX89665.1|988122_988884_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	38.3	2.4e-20
>prophage 69
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	993376	1002321	2666426		Clostridium_phage(50.0%)	6	NA	NA
AYX89669.1|993376_997693_+	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	36.1	5.2e-19
AYX89670.1|997900_998368_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AYX89671.1|998391_999588_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AYX89672.1|999603_999888_+	YlxR family protein	NA	NA	NA	NA	NA
AYX89673.1|999884_1000202_+	hypothetical protein	NA	NA	NA	NA	NA
AYX89674.1|1000206_1002321_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.0	2.2e-23
>prophage 70
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1013220	1018955	2666426		Mycobacterium_phage(33.33%)	4	NA	NA
AYX89684.1|1013220_1015653_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	5.2e-85
AYX89685.1|1015655_1016369_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYX89686.1|1016379_1017669_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.2	7.9e-40
AYX89687.1|1017668_1018955_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	22.8	1.1e-17
>prophage 71
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1023292	1024345	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX89693.1|1023292_1024345_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.5	1.2e-123
>prophage 72
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1030537	1031917	2666426		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
AYX89699.1|1030537_1031161_+	hypothetical protein	NA	A0A2H4IZ42	uncultured_Caudovirales_phage	38.4	5.5e-39
AYX89700.1|1031293_1031917_+	hypothetical protein	NA	H9A132	Staphylococcus_phage	42.1	3.3e-36
>prophage 73
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1036441	1043712	2666426		Catovirus(33.33%)	5	NA	NA
AYX89706.1|1036441_1039084_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	24.9	2.8e-39
AYX89707.1|1039099_1041037_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.4	1.0e-62
AYX91152.1|1041050_1041584_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
AYX89708.1|1041686_1042721_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AYX89709.1|1042893_1043712_+	aquaporin family protein	NA	M1IAZ4	Acanthocystis_turfacea_Chlorella_virus	34.7	4.8e-27
>prophage 74
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1050293	1050767	2666426		Fowlpox_virus(100.0%)	1	NA	NA
AYX89715.1|1050293_1050767_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	40.5	3.8e-24
>prophage 75
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1056995	1059204	2666426	transposase	Paenibacillus_phage(75.0%)	4	NA	NA
AYX89722.1|1056995_1057526_+	thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	47.3	2.8e-20
AYX89723.1|1057662_1058382_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	34.8	4.7e-18
AYX89724.1|1058432_1058756_+|transposase	transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	59.7	1.0e-12
AYX89725.1|1058871_1059204_+	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	46.9	1.5e-14
>prophage 76
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1072676	1078808	2666426		Tupanvirus(25.0%)	7	NA	NA
AYX89738.1|1072676_1074164_+	catalase	NA	A0A2K9L0T1	Tupanvirus	43.4	1.5e-90
AYX89739.1|1074496_1074745_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89740.1|1075145_1075295_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AYX89741.1|1075520_1075790_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
AYX89742.1|1075981_1076959_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	89.5	2.3e-169
AYX89743.1|1076979_1077996_+	CAP domain-containing protein	NA	U5Q1E2	Bacillus_phage	38.2	1.7e-13
AYX89744.1|1078184_1078808_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	4.5e-17
>prophage 77
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1083476	1084610	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX89751.1|1083476_1084610_+	exonuclease SbcCD subunit D	NA	A0A2R3ZXS6	Staphylococcus_phage	24.5	4.4e-10
>prophage 78
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1088440	1090087	2666426		Vibrio_phage(100.0%)	1	NA	NA
AYX89754.1|1088440_1090087_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	26.4	4.0e-20
>prophage 79
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1095689	1100089	2666426		Bacillus_virus(100.0%)	2	NA	NA
AYX89758.1|1095689_1097690_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.2	8.8e-123
AYX89759.1|1097686_1100089_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.7	1.1e-103
>prophage 80
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1104209	1108933	2666426	transposase	Paenibacillus_phage(66.67%)	5	NA	NA
AYX89762.1|1104209_1104779_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	36.1	3.7e-18
AYX89763.1|1104819_1105191_+|transposase	transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	58.2	4.1e-18
AYX89764.1|1105986_1106994_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AYX89765.1|1107040_1107430_+	D-ribose pyranase	NA	NA	NA	NA	NA
AYX89766.1|1107442_1108933_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.4	4.0e-19
>prophage 81
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1113460	1114732	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX89772.1|1113460_1114732_+	Y-family DNA polymerase	NA	O64031	Bacillus_phage	43.4	1.1e-89
>prophage 82
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1119879	1122227	2666426		Acinetobacter_phage(100.0%)	3	NA	NA
AYX89777.1|1119879_1120476_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	35.2	6.7e-26
AYX89778.1|1120444_1121461_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	30.4	1.2e-30
AYX89779.1|1121444_1122227_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	39.2	3.8e-29
>prophage 83
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1133165	1136624	2666426		Streptococcus_phage(50.0%)	3	NA	NA
AYX89789.1|1133165_1134986_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	45.1	5.5e-148
AYX89790.1|1135094_1135739_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
AYX89791.1|1135742_1136624_-	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	30.5	1.4e-16
>prophage 84
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1141089	1142694	2666426		Klosneuvirus(100.0%)	1	NA	NA
AYX89796.1|1141089_1142694_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	26.9	3.6e-50
>prophage 85
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1151568	1156088	2666426		Yellowstone_lake_phycodnavirus(33.33%)	6	NA	NA
AYX89804.1|1151568_1152834_+	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	22.2	1.5e-11
AYX89805.1|1153000_1153201_-	cold-shock protein CspA	NA	Q9AZD3	Lactococcus_phage	64.6	2.5e-17
AYX89806.1|1153385_1153691_-	DUF1033 family protein	NA	NA	NA	NA	NA
AYX89807.1|1154022_1154292_+	acylphosphatase	NA	NA	NA	NA	NA
AYX89808.1|1154305_1154926_+	5-bromo-4-chloroindolyl phosphate hydrolase	NA	NA	NA	NA	NA
AYX89809.1|1154954_1156088_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	26.5	7.2e-29
>prophage 86
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1159723	1163812	2666426	transposase	Paenibacillus_phage(75.0%)	7	NA	NA
AYX89812.1|1159723_1160515_-	MoxR family ATPase	NA	R4TG24	Halovirus	26.4	1.4e-10
AYX89813.1|1160674_1160878_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89814.1|1160901_1161711_-	VOC family protein	NA	NA	NA	NA	NA
AYX89815.1|1161924_1162125_+	Mid2-like cell wall stress sensor domain protein	NA	NA	NA	NA	NA
AYX89816.1|1162271_1162937_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	36.0	1.9e-21
AYX89817.1|1162959_1163364_+|transposase	transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	56.2	1.4e-11
AYX89818.1|1163479_1163812_+	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	46.9	1.5e-14
>prophage 87
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1177745	1193177	2666426		Staphylococcus_phage(42.86%)	20	NA	NA
AYX89828.1|1177745_1178408_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	3.9e-35
AYX89829.1|1178884_1179499_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AYX89830.1|1179517_1180591_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AYX89831.1|1180601_1181111_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYX89832.1|1181126_1182608_-	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	27.9	9.4e-21
AYX89833.1|1182766_1182988_-	YozE family protein	NA	NA	NA	NA	NA
AYX89834.1|1182987_1183491_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
AYX89835.1|1183505_1183934_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
AYX89836.1|1183926_1184454_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AYX89837.1|1184581_1185421_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	71.4	4.5e-44
AYX89838.1|1185429_1185915_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	1.0e-72
AYX89839.1|1186017_1186974_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	84.0	4.9e-164
AYX89840.1|1187352_1187790_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
AYX89841.1|1187826_1188945_-	virulence factor	NA	NA	NA	NA	NA
AYX89842.1|1188964_1189222_-	scaffolding protein	NA	NA	NA	NA	NA
AYX89843.1|1189238_1189433_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AYX89844.1|1189685_1190390_+	VUT family protein	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	22.8	1.6e-10
AYX89845.1|1190486_1191041_-	serine hydrolase family protein	NA	NA	NA	NA	NA
AYX89846.1|1191203_1191614_+	ribonuclease HI family protein	NA	NA	NA	NA	NA
AYX89847.1|1192295_1193177_-	5'-3' exonuclease	NA	A0A1S6L2U4	Erwinia_phage	29.3	1.2e-18
>prophage 88
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1200856	1202635	2666426		Bacillus_phage(50.0%)	3	NA	NA
AYX89853.1|1200856_1201423_-	DUF1273 domain-containing protein	NA	U5J9F7	Bacillus_phage	23.4	9.5e-06
AYX89854.1|1201419_1201758_-	DUF1798 family protein	NA	NA	NA	NA	NA
AYX89855.1|1202008_1202635_+	Holliday junction resolvase RecU	NA	Q0H273	Geobacillus_phage	30.8	8.6e-16
>prophage 89
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1206352	1213407	2666426	tRNA	Temperate_phage(25.0%)	5	NA	NA
AYX89859.1|1206352_1207039_-	DnaD domain protein	NA	Q938N2	Temperate_phage	31.2	1.6e-07
AYX89860.1|1207132_1208425_-|tRNA	asparagine--tRNA ligase	tRNA	H2EDM5	Moumouvirus	30.5	6.0e-56
AYX89861.1|1208519_1211219_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	31.5	7.2e-43
AYX89862.1|1211243_1212215_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AYX89863.1|1212198_1213407_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	31.1	3.9e-33
>prophage 90
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1222356	1225786	2666426		Anguillid_herpesvirus(33.33%)	5	NA	NA
AYX89873.1|1222356_1222806_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	48.1	8.8e-31
AYX89874.1|1222930_1223908_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	26.2	7.6e-11
AYX91156.1|1223909_1224611_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
AYX89875.1|1224628_1225186_-	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA	NA
AYX89876.1|1225513_1225786_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	71.1	6.1e-27
>prophage 91
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1233734	1249707	2666426	transposase	Paenibacillus_phage(20.0%)	18	NA	NA
AYX89883.1|1233734_1234031_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	46.9	1.3e-14
AYX89884.1|1234183_1234318_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89885.1|1234556_1235276_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	34.8	4.7e-18
AYX89886.1|1235377_1237003_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AYX89887.1|1237150_1238530_-	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	33.7	2.4e-58
AYX89888.1|1238516_1239482_-	hypothetical protein	NA	NA	NA	NA	NA
AYX89889.1|1239591_1239840_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	2.2e-15
AYX89890.1|1240345_1240891_-	ECF transporter S component	NA	NA	NA	NA	NA
AYX89891.1|1241309_1243082_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	25.3	5.6e-20
AYX89892.1|1243065_1243791_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	41.3	2.7e-45
AYX89893.1|1243926_1244664_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AYX89894.1|1244656_1245205_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	30.8	4.0e-09
AYX89895.1|1245188_1245923_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.3	3.2e-06
AYX91157.1|1246017_1246521_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
AYX89896.1|1246590_1247478_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.9	2.5e-37
AYX89897.1|1247513_1247960_-	transcriptional repressor	NA	NA	NA	NA	NA
AYX89898.1|1248064_1248607_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AYX89899.1|1248792_1249707_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	31.7	2.0e-05
>prophage 92
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1252794	1254279	2666426		Cyanophage(100.0%)	1	NA	NA
AYX89903.1|1252794_1254279_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	3.1e-80
>prophage 93
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1257647	1259057	2666426		Synechococcus_phage(100.0%)	1	NA	NA
AYX89906.1|1257647_1259057_-	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	29.3	3.4e-28
>prophage 94
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1265922	1267344	2666426		Erysipelothrix_phage(100.0%)	1	NA	NA
AYX89913.1|1265922_1267344_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.5	3.9e-40
>prophage 95
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1272353	1273694	2666426		Klosneuvirus(100.0%)	1	NA	NA
AYX89919.1|1272353_1273694_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	30.0	2.5e-41
>prophage 96
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1281540	1284355	2666426		Prochlorococcus_phage(100.0%)	2	NA	NA
AYX89930.1|1281540_1283016_-	glycine dehydrogenase subunit 2	NA	E3ST28	Prochlorococcus_phage	41.3	6.2e-81
AYX89931.1|1283002_1284355_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.4	2.5e-60
>prophage 97
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1289843	1290467	2666426		Streptococcus_phage(100.0%)	1	NA	NA
AYX89940.1|1289843_1290467_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.8	1.7e-32
>prophage 98
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1296868	1310568	2666426	tRNA	Catovirus(28.57%)	13	NA	NA
AYX89947.1|1296868_1297468_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.2	1.6e-59
AYX89948.1|1297747_1298161_-	transcriptional repressor	NA	NA	NA	NA	NA
AYX89949.1|1298138_1299011_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AYX89950.1|1299007_1299781_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.6	1.1e-20
AYX89951.1|1299939_1300830_-	deoxyribonuclease IV	NA	A0A1V0SBL9	Catovirus	35.3	2.4e-27
AYX89952.1|1300846_1302181_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.4	1.2e-51
AYX89953.1|1302444_1303548_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AYX89954.1|1303548_1304229_-|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	tRNA	NA	NA	NA	NA
AYX89955.1|1304295_1305402_-	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	37.2	2.4e-37
AYX89956.1|1305540_1307325_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.6	1.4e-50
AYX89957.1|1307371_1308193_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
AYX89958.1|1308207_1308831_-	transcriptional regulator	NA	NA	NA	NA	NA
AYX89959.1|1309176_1310568_+|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SAN4	Catovirus	27.3	6.1e-46
>prophage 99
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1313688	1314636	2666426		Erwinia_phage(100.0%)	1	NA	NA
AYX89965.1|1313688_1314636_-	PhoH family protein	NA	W8D063	Erwinia_phage	47.1	3.2e-46
>prophage 100
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1321105	1324218	2666426		Catovirus(50.0%)	2	NA	NA
AYX89972.1|1321105_1322236_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	29.7	4.6e-28
AYX89973.1|1322373_1324218_-	molecular chaperone DnaK	NA	G5CSH3	Megavirus	46.5	4.9e-136
>prophage 101
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1327230	1329054	2666426		Tupanvirus(100.0%)	1	NA	NA
AYX89977.1|1327230_1329054_-	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	39.5	5.7e-20
>prophage 102
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1333136	1333598	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX89980.1|1333136_1333598_-	ComE operon protein 2	NA	F8WPT6	Bacillus_phage	57.6	3.0e-34
>prophage 103
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1346767	1384347	2666426	tRNA,protease	uncultured_Mediterranean_phage(17.65%)	30	NA	NA
AYX89999.1|1346767_1347391_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	40.0	1.8e-34
AYX90000.1|1347390_1348659_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	32.7	1.2e-37
AYX90001.1|1348673_1349597_-	U32 family peptidase	NA	Q6DW11	Phage_TP	27.4	2.3e-17
AYX90002.1|1349593_1350235_-	O-methyltransferase	NA	NA	NA	NA	NA
AYX90003.1|1350869_1351196_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
AYX90004.1|1351212_1351641_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AYX90005.1|1351644_1351905_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
AYX90006.1|1351972_1354603_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	35.6	1.8e-67
AYX90007.1|1354902_1357290_-	ATP-dependent RecD-like DNA helicase	NA	A0A1P8DII4	Virus_Rctr197k	27.0	1.6e-46
AYX90008.1|1357294_1357960_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AYX90009.1|1358157_1359270_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AYX90010.1|1359270_1360413_-	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	28.9	5.0e-30
AYX90011.1|1360473_1362105_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	25.6	4.6e-37
AYX90012.1|1362393_1363395_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AYX90013.1|1363673_1363856_-	CsbD family protein	NA	NA	NA	NA	NA
AYX90014.1|1363985_1364405_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AYX90015.1|1364491_1365772_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	49.0	1.7e-106
AYX90016.1|1365847_1366615_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AYX90017.1|1366994_1368761_-|tRNA	aspartate--tRNA ligase	tRNA	K7Y9W2	Megavirus	39.1	8.3e-08
AYX90018.1|1368773_1370036_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AYX90019.1|1370376_1371252_-	cell wall amidase	NA	A0A067ZJB6	Vibrio_phage	30.9	2.3e-14
AYX90020.1|1371248_1371701_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AYX90021.1|1371714_1373904_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	39.1	5.3e-12
AYX90022.1|1374875_1375394_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.9	3.0e-30
AYX90023.1|1375409_1377686_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.6	8.4e-69
AYX90024.1|1378278_1380555_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	32.7	6.5e-29
AYX90025.1|1380875_1381136_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	4.3e-06
AYX90026.1|1381153_1382293_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	1.2e-84
AYX90027.1|1382317_1383343_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AYX90028.1|1383345_1384347_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	5.8e-06
>prophage 104
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1395760	1401254	2666426	tRNA,transposase	Paenibacillus_phage(66.67%)	5	NA	NA
AYX90045.1|1395760_1395991_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	58.9	9.4e-13
AYX90046.1|1396262_1396361_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90047.1|1396630_1397197_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	33.9	7.5e-11
AYX90048.1|1397349_1398612_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AYX90049.1|1398623_1401254_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.8	2.2e-153
>prophage 105
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1411076	1422348	2666426	tRNA,protease	Bacillus_virus(20.0%)	10	NA	NA
AYX90058.1|1411076_1412339_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.7	2.8e-143
AYX90059.1|1412525_1413836_-	trigger factor	NA	NA	NA	NA	NA
AYX90060.1|1414020_1414944_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90061.1|1414956_1415568_-	NUDIX domain-containing protein	NA	A0A127AYS1	Bacillus_phage	36.3	3.6e-27
AYX90062.1|1415811_1416168_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AYX90063.1|1416234_1416435_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AYX91160.1|1416463_1416991_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.4	2.7e-10
AYX90064.1|1417208_1418696_-	amino acid permease	NA	NA	NA	NA	NA
AYX90065.1|1419105_1421082_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	1.8e-120
AYX90066.1|1421424_1422348_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	31.3	2.3e-33
>prophage 106
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1426510	1434479	2666426		Bacillus_phage(40.0%)	5	NA	NA
AYX90071.1|1426510_1427383_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	28.8	1.9e-29
AYX90072.1|1427403_1430034_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	32.1	6.7e-46
AYX90073.1|1430391_1432080_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	37.1	5.5e-33
AYX90074.1|1432079_1432790_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	27.5	1.8e-06
AYX90075.1|1433210_1434479_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	57.4	4.1e-09
>prophage 107
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1438305	1440066	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90078.1|1438305_1440066_-	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	74.4	7.7e-30
>prophage 108
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1444799	1448003	2666426		Streptomyces_phage(100.0%)	1	NA	NA
AYX90083.1|1444799_1448003_-	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	30.8	1.7e-131
>prophage 109
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1460907	1465336	2666426	tRNA	Providencia_phage(50.0%)	4	NA	NA
AYX90097.1|1460907_1461900_-	signal peptide peptidase SppA	NA	K4I1N3	Providencia_phage	28.8	4.2e-17
AYX90098.1|1462122_1462899_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90099.1|1462979_1464203_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
AYX90100.1|1464199_1465336_-	cysteine desulfurase	NA	A0A141ZJV0	Faustovirus	28.7	2.7e-28
>prophage 110
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1469861	1474058	2666426		Enterococcus_phage(50.0%)	4	NA	NA
AYX90105.1|1469861_1470605_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	28.3	7.3e-14
AYX90106.1|1470683_1471124_+	SACOL1771 family peroxiredoxin	NA	NA	NA	NA	NA
AYX90107.1|1471288_1472449_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
AYX90108.1|1472441_1474058_+	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	52.3	9.5e-59
>prophage 111
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1478623	1481397	2666426	tRNA	Pithovirus(50.0%)	2	NA	NA
AYX90111.1|1478623_1479910_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	28.0	2.5e-09
AYX90112.1|1480134_1481397_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	42.8	1.1e-86
>prophage 112
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1484887	1486597	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90115.1|1484887_1486597_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	86.6	1.6e-242
>prophage 113
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1495304	1500466	2666426		Mycobacterium_phage(50.0%)	3	NA	NA
AYX90123.1|1495304_1498973_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	43.9	1.8e-81
AYX90124.1|1498990_1499590_-	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
AYX90125.1|1499602_1500466_-	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	83.2	2.1e-60
>prophage 114
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1511189	1550632	2666426	tRNA,transposase	Staphylococcus_phage(82.76%)	39	NA	NA
AYX90137.1|1511189_1512449_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	73.1	5.5e-38
AYX90138.1|1512625_1512721_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AYX90139.1|1512875_1513187_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	2.2e-36
AYX90140.1|1513208_1515623_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.2	0.0e+00
AYX90141.1|1516084_1517254_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	74.9	1.5e-167
AYX90142.1|1517363_1518317_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	1.9e-67
AYX90143.1|1518313_1518874_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	64.3	1.2e-64
AYX90144.1|1518997_1519399_-	transcriptional regulator	NA	NA	NA	NA	NA
AYX90145.1|1519547_1520504_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
AYX90146.1|1520780_1521605_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYX90147.1|1521872_1522874_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	68.1	8.9e-124
AYX90148.1|1523147_1523606_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	74.3	1.2e-56
AYX90149.1|1523617_1524796_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	72.5	4.2e-165
AYX90150.1|1524806_1525439_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	7.2e-71
AYX90151.1|1525445_1526489_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	65.9	4.6e-131
AYX90152.1|1527180_1528656_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	66.7	5.0e-14
AYX90153.1|1528835_1529747_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYX90154.1|1530110_1530830_+	transcriptional regulator	NA	A0A0C5AJ29	Paenibacillus_phage	34.8	3.6e-18
AYX90155.1|1530934_1531048_+	hypothetical protein	NA	NA	NA	NA	NA
AYX90156.1|1531071_1531551_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	53.8	5.2e-37
AYX90157.1|1531749_1532604_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	42.9	1.2e-39
AYX90158.1|1532768_1532993_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90159.1|1533212_1533692_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	47.1	4.2e-23
AYX90160.1|1534128_1534578_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	9.1e-20
AYX90161.1|1534973_1535687_-	transaldolase	NA	H8ZNI7	Synechococcus_phage	36.2	5.5e-19
AYX90162.1|1535973_1536279_+	hypothetical protein	NA	NA	NA	NA	NA
AYX90163.1|1536339_1536705_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	59.5	3.7e-35
AYX90164.1|1536701_1537058_+	CrcB family protein	NA	NA	NA	NA	NA
AYX90165.1|1537135_1537972_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	63.9	1.4e-101
AYX90166.1|1538425_1539334_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	72.2	3.2e-88
AYX90167.1|1539427_1540624_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.9	2.2e-193
AYX90168.1|1541004_1542591_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	80.3	9.1e-256
AYX91161.1|1542625_1543399_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	72.7	2.2e-101
AYX90169.1|1543406_1543889_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.9	4.2e-47
AYX90170.1|1543905_1544187_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	77.0	1.8e-29
AYX90171.1|1544183_1545188_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.1	4.8e-93
AYX90172.1|1545200_1546589_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	60.1	2.4e-167
AYX90173.1|1548538_1549096_-	serine hydrolase family protein	NA	NA	NA	NA	NA
AYX90174.1|1549237_1550632_-	protoporphyrinogen oxidase	NA	A0A0M3SGX2	Mollivirus	33.3	6.2e-06
>prophage 115
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1554727	1555465	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90179.1|1554727_1555465_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	3.5e-24
>prophage 116
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1559498	1560261	2666426	transposase	Paenibacillus_phage(100.0%)	2	NA	NA
AYX90186.1|1559498_1559903_+|transposase	transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	58.3	3.7e-12
AYX90187.1|1560018_1560261_+	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	58.9	9.9e-13
>prophage 117
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1571489	1573739	2666426		Tetraselmis_virus(100.0%)	1	NA	NA
AYX90197.1|1571489_1573739_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	43.9	3.5e-184
>prophage 118
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1584597	1585320	2666426		Planktothrix_phage(100.0%)	1	NA	NA
AYX90209.1|1584597_1585320_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	3.1e-33
>prophage 119
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1601406	1603143	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX90217.1|1601406_1603143_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	2.7e-51
>prophage 120
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1617961	1618591	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX90234.1|1617961_1618591_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	26.2	1.8e-05
>prophage 121
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1625757	1630793	2666426		Staphylococcus_phage(33.33%)	4	NA	NA
AYX90243.1|1625757_1626312_+	DNA polymerase III subunit epsilon	NA	B5WZL1	Staphylococcus_phage	36.7	3.5e-29
AYX90244.1|1626350_1627421_-	DNA polymerase IV	NA	NA	NA	NA	NA
AYX90245.1|1628379_1629741_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	42.5	3.7e-104
AYX90246.1|1629875_1630793_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	26.1	1.1e-16
>prophage 122
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1637681	1648028	2666426		Bacillus_virus(40.0%)	9	NA	NA
AYX90252.1|1637681_1639685_-	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	36.6	1.9e-109
AYX90253.1|1639688_1641893_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.3	1.2e-128
AYX90254.1|1641898_1642582_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
AYX90255.1|1642867_1643170_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90256.1|1643255_1644551_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	5.5e-17
AYX90257.1|1644899_1645085_-	NETI motif-containing protein	NA	NA	NA	NA	NA
AYX90258.1|1645081_1645660_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AYX90259.1|1645729_1646566_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	48.9	1.3e-64
AYX90260.1|1646558_1648028_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.6	3.7e-102
>prophage 123
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1651981	1653751	2666426		Listeria_phage(50.0%)	2	NA	NA
AYX90264.1|1651981_1653064_-	pectate lyase	NA	A8ATB1	Listeria_phage	28.2	3.2e-26
AYX90265.1|1653199_1653751_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	1.2e-29
>prophage 124
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1657677	1658103	2666426		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AYX90269.1|1657677_1658103_+	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	52.4	2.6e-24
>prophage 125
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1663306	1665764	2666426		Staphylococcus_phage(100.0%)	3	NA	NA
AYX90276.1|1663306_1664179_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.5	1.9e-29
AYX90277.1|1664197_1664860_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90278.1|1664900_1665764_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	8.7e-19
>prophage 126
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1669232	1671189	2666426		uncultured_virus(100.0%)	2	NA	NA
AYX90283.1|1669232_1670855_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.4	2.9e-156
AYX90284.1|1670904_1671189_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	47.3	3.1e-13
>prophage 127
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1678731	1682088	2666426		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AYX90292.1|1678731_1679448_+	DNA-binding response regulator	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	33.9	4.4e-24
AYX90293.1|1679640_1680606_-	carbohydrate kinase	NA	NA	NA	NA	NA
AYX90294.1|1680606_1682088_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	23.4	3.5e-15
>prophage 128
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1685205	1690953	2666426	tRNA	Bodo_saltans_virus(33.33%)	4	NA	NA
AYX90298.1|1685205_1687134_+	ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	29.2	4.8e-49
AYX90299.1|1687479_1689072_+	MutS family DNA mismatch repair protein	NA	F2Y1C6	Organic_Lake_phycodnavirus	30.9	1.6e-18
AYX90300.1|1689184_1689607_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
AYX90301.1|1689924_1690953_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	39.7	9.3e-60
>prophage 129
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1694775	1699744	2666426		Micromonas_pusilla_virus(50.0%)	4	NA	NA
AYX90306.1|1694775_1696566_+	biosynthetic-type acetolactate synthase large subunit	NA	G8DDL3	Micromonas_pusilla_virus	30.4	4.7e-67
AYX90307.1|1696562_1697036_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AYX90308.1|1697082_1698087_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AYX90309.1|1698208_1699744_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.7	1.1e-11
>prophage 130
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1712706	1716037	2666426		Bacillus_phage(50.0%)	5	NA	NA
AYX90316.1|1712706_1713477_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	33.1	3.2e-20
AYX90317.1|1713451_1713934_-	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
AYX90318.1|1713935_1714262_-	STAS domain-containing protein	NA	NA	NA	NA	NA
AYX90319.1|1714330_1715332_-	serine/threonine protein phosphatase	NA	NA	NA	NA	NA
AYX90320.1|1715674_1716037_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	31.7	1.9e-07
>prophage 131
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1720616	1722134	2666426		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
AYX90327.1|1720616_1722134_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.4	4.0e-59
>prophage 132
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1729635	1730280	2666426		Pandoravirus(100.0%)	1	NA	NA
AYX90335.1|1729635_1730280_+	HD domain-containing protein	NA	S4W232	Pandoravirus	26.6	2.3e-08
>prophage 133
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1735983	1736403	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90341.1|1735983_1736403_-	single-stranded DNA-binding protein	NA	A0A1J0MFL8	Staphylococcus_phage	43.6	5.0e-20
>prophage 134
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1746550	1758325	2666426	transposase	Paenibacillus_phage(33.33%)	13	NA	NA
AYX90354.1|1746550_1747681_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	27.1	2.0e-23
AYX90355.1|1747703_1748333_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AYX90356.1|1748349_1749588_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	51.9	5.0e-100
AYX90357.1|1749609_1750134_-	TIGR01440 family protein	NA	NA	NA	NA	NA
AYX90358.1|1750277_1750700_-	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
AYX90359.1|1750696_1751740_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	42.1	3.4e-41
AYX90360.1|1751835_1752675_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AYX90361.1|1752658_1753735_-	peptide chain release factor 1	NA	NA	NA	NA	NA
AYX90362.1|1753734_1754334_-	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	1.6e-32
AYX90363.1|1754536_1754794_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
AYX90364.1|1754926_1756243_-	transcription termination factor Rho	NA	NA	NA	NA	NA
AYX90365.1|1756782_1757637_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	50.0	1.4e-48
AYX90366.1|1757758_1758325_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	33.9	7.5e-11
>prophage 135
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1764026	1765637	2666426		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
AYX90372.1|1764026_1765637_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.2	2.3e-150
>prophage 136
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1774805	1778427	2666426		Geobacillus_virus(50.0%)	4	NA	NA
AYX90382.1|1774805_1776107_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.4	1.8e-132
AYX90383.1|1776174_1776837_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
AYX90384.1|1777016_1777727_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
AYX90385.1|1777977_1778427_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	52.4	6.7e-39
>prophage 137
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1790586	1794282	2666426		Bacillus_phage(50.0%)	3	NA	NA
AYX90399.1|1790586_1791387_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.8	1.2e-09
AYX90400.1|1791414_1791774_-	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
AYX90401.1|1792476_1794282_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7J689	Paramecium_bursaria_Chlorella_virus	37.2	3.7e-96
>prophage 138
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1804195	1805101	2666426		Klosneuvirus(100.0%)	1	NA	NA
AYX90409.1|1804195_1805101_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	33.2	2.4e-27
>prophage 139
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1820025	1820988	2666426		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AYX90419.1|1820025_1820988_-	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	29.6	4.4e-19
>prophage 140
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1830723	1832316	2666426		Vibrio_phage(100.0%)	1	NA	NA
AYX90428.1|1830723_1832316_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.0	8.9e-17
>prophage 141
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1839685	1841358	2666426		Staphylococcus_phage(50.0%)	2	NA	NA
AYX90437.1|1839685_1840549_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	2.7e-12
AYX90438.1|1840545_1841358_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.5	7.7e-17
>prophage 142
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1856639	1870017	2666426	transposase	Paenibacillus_phage(33.33%)	10	NA	NA
AYX90469.1|1856639_1857974_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	32.4	4.8e-48
AYX90470.1|1858085_1860224_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.0	1.8e-36
AYX90471.1|1860346_1861216_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYX90472.1|1861405_1862263_+	glucose transporter	NA	NA	NA	NA	NA
AYX90473.1|1862347_1863139_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.9	3.6e-19
AYX90474.1|1863276_1863996_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	34.8	4.7e-18
AYX90475.1|1863965_1864820_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	50.0	1.4e-48
AYX90476.1|1864924_1865833_-	AEC family transporter	NA	NA	NA	NA	NA
AYX90477.1|1866219_1866537_+	hypothetical protein	NA	NA	NA	NA	NA
AYX90478.1|1866846_1870017_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.9	1.3e-64
>prophage 143
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1882919	1883525	2666426		Planktothrix_phage(100.0%)	1	NA	NA
AYX90495.1|1882919_1883525_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	29.6	7.5e-17
>prophage 144
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1886600	1887593	2666426		Tupanvirus(100.0%)	1	NA	NA
AYX90499.1|1886600_1887593_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	37.1	5.8e-51
>prophage 145
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1895135	1895885	2666426		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AYX90507.1|1895135_1895885_+	amino acid ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.2	1.8e-20
>prophage 146
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1910179	1913538	2666426		Cedratvirus(50.0%)	3	NA	NA
AYX90522.1|1910179_1911136_+	hydroxyacid dehydrogenase	NA	A0A1M7XU89	Cedratvirus	32.4	3.8e-31
AYX90523.1|1911520_1912645_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90524.1|1912761_1913538_-	autolysin	NA	H9A0P7	Staphylococcus_phage	40.4	9.9e-38
>prophage 147
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1931605	1932250	2666426		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AYX90543.1|1931605_1932250_-	HAD family hydrolase	NA	A7ITQ4	Paramecium_bursaria_Chlorella_virus	27.7	1.2e-09
>prophage 148
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1940672	1943877	2666426		Diadromus_pulchellus_ascovirus(50.0%)	3	NA	NA
AYX90551.1|1940672_1941554_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	44.9	2.0e-63
AYX90552.1|1941630_1942755_-	amidohydrolase	NA	NA	NA	NA	NA
AYX91165.1|1942761_1943877_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	36.0	5.6e-50
>prophage 149
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1956605	1957505	2666426		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
AYX90563.1|1956605_1957505_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	26.0	1.1e-11
>prophage 150
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1974695	1975904	2666426		Salmonella_phage(100.0%)	1	NA	NA
AYX90580.1|1974695_1975904_-	Bcr/CflA family efflux MFS transporter	NA	S4TR35	Salmonella_phage	26.9	9.3e-35
>prophage 151
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1979745	1982296	2666426		Planktothrix_phage(50.0%)	3	NA	NA
AYX90584.1|1979745_1980414_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	5.5e-37
AYX90585.1|1980413_1981466_-	ABC transporter permease	NA	NA	NA	NA	NA
AYX90586.1|1981621_1982296_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	45.2	1.2e-50
>prophage 152
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	1995378	1996919	2666426	transposase	Paenibacillus_phage(100.0%)	2	NA	NA
AYX90594.1|1995378_1995711_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	46.9	1.5e-14
AYX90595.1|1996352_1996919_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	33.9	7.5e-11
>prophage 153
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2013361	2013937	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90609.1|2013361_2013937_-	hypothetical protein	NA	A0A1Q1PW31	Staphylococcus_phage	47.0	1.8e-44
>prophage 154
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2031665	2032028	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90628.1|2031665_2032028_+	hypothetical protein	NA	A0A2R3ZXP9	Staphylococcus_phage	54.0	1.2e-17
>prophage 155
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2046191	2047949	2666426		Enterobacteria_phage(100.0%)	1	NA	NA
AYX90640.1|2046191_2047949_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.2	8.5e-61
>prophage 156
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2051100	2056350	2666426	transposase	Paenibacillus_phage(66.67%)	6	NA	NA
AYX90645.1|2051100_2051841_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	42.1	5.0e-39
AYX90646.1|2051854_2052814_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYX90647.1|2052819_2053581_+	ABC transporter permease	NA	NA	NA	NA	NA
AYX90648.1|2053594_2054632_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYX90649.1|2054806_2055526_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.1	8.1e-18
AYX90650.1|2055495_2056350_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	50.0	1.4e-48
>prophage 157
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2059557	2060742	2666426		Mycoplasma_phage(100.0%)	1	NA	NA
AYX90655.1|2059557_2060742_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	51.6	1.3e-20
>prophage 158
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2069068	2069716	2666426		Bacillus_virus(100.0%)	1	NA	NA
AYX90663.1|2069068_2069716_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	36.5	6.1e-25
>prophage 159
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2074418	2075237	2666426		Moumouvirus(100.0%)	1	NA	NA
AYX90668.1|2074418_2075237_-	SDR family oxidoreductase	NA	A0A2P1ELN2	Moumouvirus	37.0	2.0e-09
>prophage 160
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2089858	2090359	2666426		Lactococcus_phage(100.0%)	1	NA	NA
AYX90681.1|2089858_2090359_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	42.5	7.5e-31
>prophage 161
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2096367	2098161	2666426		Vaccinia_virus(100.0%)	1	NA	NA
AYX90687.1|2096367_2098161_-	beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	48.1	9.6e-153
>prophage 162
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2130362	2132126	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX90710.1|2130362_2132126_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.7	5.7e-49
>prophage 163
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2153896	2158563	2666426		Planktothrix_phage(50.0%)	4	NA	NA
AYX90726.1|2153896_2155357_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	26.4	6.9e-16
AYX90727.1|2155366_2156086_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
AYX90728.1|2156087_2156672_-	Trep_Strep domain-containing protein	NA	NA	NA	NA	NA
AYX91172.1|2157225_2158563_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	30.6	2.1e-19
>prophage 164
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2173397	2175140	2666426		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AYX90743.1|2173397_2175140_-	pyruvate oxidase	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	25.7	1.2e-30
>prophage 165
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2184867	2187120	2666426		Vibrio_phage(50.0%)	2	NA	NA
AYX90752.1|2184867_2186427_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.0	4.0e-22
AYX90753.1|2186586_2187120_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	43.2	7.0e-35
>prophage 166
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2201757	2203449	2666426		Vibrio_phage(100.0%)	1	NA	NA
AYX90762.1|2201757_2203449_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	23.3	2.6e-19
>prophage 167
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2210320	2225927	2666426		Trichoplusia_ni_ascovirus(12.5%)	14	NA	NA
AYX90769.1|2210320_2211190_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	42.5	2.3e-51
AYX90770.1|2211342_2213229_-	ABC transporter permease	NA	NA	NA	NA	NA
AYX90771.1|2213218_2213980_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.9	1.2e-32
AYX90772.1|2214214_2215666_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	50.1	4.6e-121
AYX90773.1|2215842_2218227_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.1	6.4e-128
AYX90774.1|2218280_2218487_+	copper chaperone	NA	NA	NA	NA	NA
AYX90775.1|2218556_2219555_-	lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	31.2	2.4e-36
AYX90776.1|2219569_2220733_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AYX90777.1|2221034_2221775_-	transglycosylase	NA	A0A2R3ZXP9	Staphylococcus_phage	47.2	4.0e-20
AYX90778.1|2222287_2223331_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AYX90779.1|2223635_2224067_-	6-pyruvoyl tetrahydrobiopterin synthase	NA	J9PV91	Bacillus_phage	35.6	3.6e-13
AYX90780.1|2224199_2224553_+	DUF488 family protein	NA	NA	NA	NA	NA
AYX90781.1|2224565_2225231_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AYX90782.1|2225351_2225927_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	46.0	1.7e-10
>prophage 168
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2229291	2230050	2666426	protease	Staphylococcus_phage(100.0%)	1	NA	NA
AYX91174.1|2229291_2230050_-|protease	serine protease	protease	A0A2H4PQN3	Staphylococcus_phage	33.7	6.5e-18
>prophage 169
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2237683	2238376	2666426		Tupanvirus(100.0%)	1	NA	NA
AYX90794.1|2237683_2238376_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	27.2	2.0e-10
>prophage 170
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2253416	2254121	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90810.1|2253416_2254121_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.0	3.5e-26
>prophage 171
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2273693	2274326	2666426		Streptococcus_virus(100.0%)	1	NA	NA
AYX90825.1|2273693_2274326_-	GTP cyclohydrolase I FolE	NA	A0A1W7AF02	Streptococcus_virus	59.8	1.6e-57
>prophage 172
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2307899	2308565	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX90852.1|2307899_2308565_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	1.4e-19
>prophage 173
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2312524	2316341	2666426		Burkholderia_virus(50.0%)	3	NA	NA
AYX90856.1|2312524_2313937_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.2	2.4e-50
AYX90857.1|2314154_2315093_+	purine nucleosidase	NA	NA	NA	NA	NA
AYX90858.1|2315198_2316341_-	CapA family protein	NA	A0A2H4JG01	uncultured_Caudovirales_phage	53.6	9.6e-106
>prophage 174
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2320532	2328834	2666426	holin	Klosneuvirus(33.33%)	6	NA	NA
AYX90861.1|2320532_2322215_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	34.4	4.6e-64
AYX90862.1|2322274_2323768_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYX90863.1|2323972_2324524_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYX90864.1|2324691_2326314_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	22.3	1.5e-16
AYX90865.1|2327090_2327807_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AYX90866.1|2327943_2328834_+	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	27.3	1.6e-07
>prophage 175
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2333363	2334686	2666426		Klosneuvirus(100.0%)	1	NA	NA
AYX90870.1|2333363_2334686_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.9	4.1e-36
>prophage 176
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2340216	2348369	2666426		Thermoanaerobacterium_phage(33.33%)	8	NA	NA
AYX90875.1|2340216_2340426_+	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	39.1	1.7e-05
AYX90876.1|2340409_2340913_+	hypothetical protein	NA	NA	NA	NA	NA
AYX90877.1|2340920_2341436_+	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
AYX90878.1|2341726_2342140_-	VOC family protein	NA	NA	NA	NA	NA
AYX90879.1|2342259_2343075_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
AYX90880.1|2343064_2345701_-	pyruvate, phosphate dikinase	NA	A0A2I7RQW7	Vibrio_phage	41.1	3.2e-88
AYX90881.1|2346020_2347100_-	transcriptional regulator	NA	NA	NA	NA	NA
AYX90882.1|2347238_2348369_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	35.0	2.4e-40
>prophage 177
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2352191	2352980	2666426		Tupanvirus(100.0%)	1	NA	NA
AYX90885.1|2352191_2352980_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	50.6	4.1e-39
>prophage 178
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2364054	2364945	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX90896.1|2364054_2364945_-	M23 family metallopeptidase	NA	U5PY92	Bacillus_phage	37.7	1.5e-10
>prophage 179
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2368728	2372223	2666426		Enterococcus_phage(66.67%)	3	NA	NA
AYX90900.1|2368728_2369715_-	choloylglycine hydrolase family protein	NA	M1HS66	Paramecium_bursaria_Chlorella_virus	29.4	2.0e-27
AYX90901.1|2369842_2370376_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	44.3	1.3e-36
AYX90902.1|2370372_2372223_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.1	8.5e-229
>prophage 180
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2390189	2390864	2666426	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
AYX90920.1|2390189_2390864_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
>prophage 181
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2395835	2398562	2666426		Acanthocystis_turfacea_Chlorella_virus(50.0%)	2	NA	NA
AYX90926.1|2395835_2396654_-	aquaporin family protein	NA	M1H9L8	Acanthocystis_turfacea_Chlorella_virus	33.1	8.0e-22
AYX90927.1|2396942_2398562_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.8	3.8e-23
>prophage 182
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2402688	2406216	2666426		Streptococcus_phage(50.0%)	3	NA	NA
AYX90931.1|2402688_2404734_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.2	8.6e-65
AYX90932.1|2405161_2405488_-	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
AYX90933.1|2405610_2406216_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	31.0	6.3e-16
>prophage 183
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2410104	2418881	2666426	transposase	Streptococcus_phage(60.0%)	10	NA	NA
AYX90938.1|2410104_2410653_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	42.5	4.8e-31
AYX90939.1|2411165_2411780_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
AYX90940.1|2411884_2414062_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	8.4e-252
AYX90941.1|2414318_2415086_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AYX90942.1|2415339_2415741_-	ArsR family transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	45.6	1.9e-21
AYX90943.1|2415915_2416377_+	signal peptidase II	NA	NA	NA	NA	NA
AYX90944.1|2416478_2416763_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90945.1|2417102_2417720_+	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
AYX90946.1|2417738_2418086_+	transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	35.8	1.9e-12
AYX90947.1|2418206_2418881_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	3.4e-127
>prophage 184
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2425180	2429615	2666426		Staphylococcus_phage(75.0%)	5	NA	NA
AYX90956.1|2425180_2425495_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	60.6	3.6e-31
AYX91176.1|2425497_2426787_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	80.4	4.7e-186
AYX90957.1|2426804_2427200_+	protein ArsC 2	NA	A0A2H4PQT9	Staphylococcus_phage	82.0	2.6e-58
AYX90958.1|2427506_2428049_-	resolvase	NA	NA	NA	NA	NA
AYX90959.1|2428163_2429615_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	50.7	1.9e-119
>prophage 185
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2439568	2440177	2666426		Clostridium_phage(100.0%)	1	NA	NA
AYX90969.1|2439568_2440177_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.8	1.0e-18
>prophage 186
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2445788	2448369	2666426	transposase	Staphylococcus_phage(50.0%)	2	NA	NA
AYX90975.1|2445788_2446463_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	4.9e-126
AYX90976.1|2447928_2448369_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	33.6	4.6e-16
>prophage 187
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2452337	2453012	2666426	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
AYX90979.1|2452337_2453012_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
>prophage 188
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2457769	2465474	2666426	transposase	Paenibacillus_phage(50.0%)	6	NA	NA
AYX90985.1|2457769_2459389_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.3	4.9e-23
AYX90986.1|2460609_2460855_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90987.1|2461888_2462860_-	replication protein	NA	A0A0S2MVK1	Bacillus_phage	33.7	2.5e-06
AYX90988.1|2463933_2464230_-	hypothetical protein	NA	A0A0C5AEA5	Paenibacillus_phage	46.9	1.3e-14
AYX90989.1|2464382_2464517_-	hypothetical protein	NA	NA	NA	NA	NA
AYX90990.1|2464745_2465474_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	34.8	4.8e-18
>prophage 189
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2471063	2471828	2666426		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AYX90996.1|2471063_2471828_-	2,4-dienoyl-CoA reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.2	1.2e-14
>prophage 190
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2480235	2482653	2666426		Streptococcus_phage(100.0%)	1	NA	NA
AYX91005.1|2480235_2482653_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	45.9	4.0e-162
>prophage 191
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2504756	2505608	2666426		Pseudomonas_phage(100.0%)	1	NA	NA
AYX91021.1|2504756_2505608_-	hypothetical protein	NA	G9IA57	Pseudomonas_phage	29.7	2.6e-15
>prophage 192
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2534172	2535579	2666426		Catovirus(100.0%)	1	NA	NA
AYX91034.1|2534172_2535579_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	27.7	2.1e-09
>prophage 193
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2542714	2543548	2666426	transposase	Bacillus_phage(100.0%)	2	NA	NA
AYX91039.1|2542714_2542978_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	47.6	4.2e-09
AYX91040.1|2542996_2543548_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	45.1	1.4e-30
>prophage 194
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2550881	2572042	2666426	transposase	Staphylococcus_phage(33.33%)	19	NA	NA
AYX91179.1|2550881_2551976_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A2K9L470	Tupanvirus	31.4	3.1e-29
AYX91045.1|2552018_2552633_-	acetyltransferase	NA	NA	NA	NA	NA
AYX91046.1|2552629_2553226_-	sugar transferase	NA	NA	NA	NA	NA
AYX91047.1|2553241_2554390_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AYX91048.1|2554392_2555667_-	nucleotide sugar dehydrogenase	NA	A0A218MKK1	uncultured_virus	23.4	1.9e-06
AYX91049.1|2555688_2556690_-	NAD-dependent epimerase	NA	A0A2K9L4U8	Tupanvirus	32.5	1.4e-36
AYX91050.1|2556693_2557245_-	acyltransferase	NA	NA	NA	NA	NA
AYX91051.1|2557241_2558459_-	hypothetical protein	NA	NA	NA	NA	NA
AYX91052.1|2558448_2559642_-	hypothetical protein	NA	NA	NA	NA	NA
AYX91053.1|2559631_2561446_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	28.7	9.7e-28
AYX91054.1|2561470_2562238_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AYX91055.1|2562240_2562927_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	33.5	5.5e-24
AYX91056.1|2562942_2563608_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AYX91057.1|2563952_2564627_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
AYX91058.1|2564767_2565307_+	hypothetical protein	NA	NA	NA	NA	NA
AYX91059.1|2565354_2566185_+	hypothetical protein	NA	NA	NA	NA	NA
AYX91060.1|2566187_2567702_+	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.4	2.4e-48
AYX91061.1|2567691_2568936_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	27.8	2.6e-24
AYX91062.1|2568919_2572042_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	29.3	2.4e-66
>prophage 195
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2575359	2577036	2666426		Bacillus_phage(100.0%)	1	NA	NA
AYX91068.1|2575359_2577036_-	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	32.2	2.4e-44
>prophage 196
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2585116	2591020	2666426		Bacillus_phage(66.67%)	5	NA	NA
AYX91075.1|2585116_2585917_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	37.1	3.2e-39
AYX91076.1|2586356_2587142_-	hypothetical protein	NA	NA	NA	NA	NA
AYX91077.1|2587142_2588483_-	hypothetical protein	NA	NA	NA	NA	NA
AYX91078.1|2588472_2590305_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.7	4.7e-30
AYX91079.1|2590318_2591020_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.2	2.7e-42
>prophage 197
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2595690	2598666	2666426		Megavirus(50.0%)	2	NA	NA
AYX91082.1|2595690_2596974_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.4e-68
AYX91083.1|2597262_2598666_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.3	8.4e-112
>prophage 198
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2605046	2615140	2666426	tRNA	Bacillus_virus(50.0%)	5	NA	NA
AYX91090.1|2605046_2606336_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.1	7.0e-89
AYX91091.1|2606690_2608193_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	40.6	1.2e-95
AYX91180.1|2608572_2609385_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AYX91092.1|2610485_2613173_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.4	7.2e-120
AYX91093.1|2613208_2615140_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	2.0e-143
>prophage 199
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2625515	2626352	2666426		Gordonia_phage(100.0%)	1	NA	NA
AYX91102.1|2625515_2626352_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHY8	Gordonia_phage	34.6	1.2e-09
>prophage 200
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2647572	2649099	2666426		Staphylococcus_phage(100.0%)	1	NA	NA
AYX91117.1|2647572_2649099_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	27.3	5.1e-38
>prophage 201
CP033735	Staphylococcus cohnii strain FDAARGOS_538 chromosome, complete genome	2666426	2662830	2665106	2666426		Pandoravirus(100.0%)	2	NA	NA
AYX91127.1|2662830_2664006_-	PLP-dependent transferase	NA	A0A0B5JD48	Pandoravirus	26.3	4.0e-14
AYX91128.1|2664002_2665106_-	methionine biosynthesis PLP-dependent protein	NA	A0A0B5JD48	Pandoravirus	26.8	1.0e-08
