assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003955865.1_ASM395586v1	CP019581	Lactobacillus helveticus strain LH5, complete genome	1	962207-962386	1	PILER-CR	no	cas14j	DEDDh,DinG,WYL,cas14k,cas14j,Cas14u_CAS-V,cas3,RT,csa3,cas2,cas5,cas8c,cas7,cas4,cas1	Unclear	ATGTGGGATTTGAACCCACGC	21	0	0	NA	NA	NA	2	2	TypeV	DEDDh,DinG,WYL,cas14k,cas14j,Cas14u_CAS-V,cas3,RT,csa3,cas2,cas5,cas8c,cas7,cas4,cas1	NA|43aa|up_5|CP019581.1_955816_955945_-,NA|54aa|down_1|CP019581.1_964054_964216_-,NA|143aa|down_2|CP019581.1_964396_964825_-,NA|105aa|down_7|CP019581.1_969562_969877_-	NA|272aa|up_9|CP019581.1_951149_951965_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	cas14j|395aa|up_8|CP019581.1_952019_953204_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|353aa|up_7|CP019581.1_953543_954602_-	pfam03217, SLAP, SLAP domain	NA|251aa|up_6|CP019581.1_954976_955729_-	pfam17312, Helveticin_J, Bacteriocin helveticin-J	NA|43aa|up_5|CP019581.1_955816_955945_-	NA	NA|286aa|up_4|CP019581.1_956330_957188_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|146aa|up_3|CP019581.1_957252_957690_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|591aa|up_2|CP019581.1_958190_959963_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|171aa|up_1|CP019581.1_960072_960585_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|489aa|up_0|CP019581.1_960592_962059_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|167aa|down_0|CP019581.1_962554_963055_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|54aa|down_1|CP019581.1_964054_964216_-	NA	NA|143aa|down_2|CP019581.1_964396_964825_-	NA	NA|66aa|down_3|CP019581.1_965039_965237_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|103aa|down_4|CP019581.1_965725_966034_-	pfam18862, ApeA_NTD1, ApeA N-terminal domain 1	NA|451aa|down_5|CP019581.1_966434_967787_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|459aa|down_6|CP019581.1_968149_969526_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|105aa|down_7|CP019581.1_969562_969877_-	NA	NA|235aa|down_8|CP019581.1_970084_970789_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|231aa|down_9|CP019581.1_970833_971526_-	pfam06736, DUF1211, Protein of unknown function (DUF1211)
GCA_003955865.1_ASM395586v1	CP019581	Lactobacillus helveticus strain LH5, complete genome	2	1304353-1304505	1	CRISPRCasFinder	no	cas14j	DEDDh,DinG,WYL,cas14k,cas14j,Cas14u_CAS-V,cas3,RT,csa3,cas2,cas5,cas8c,cas7,cas4,cas1	Unclear	TTTGAACAAAACACATCATATACCATATTAGTTCGAATATCAAACTATT	49	0	0	NA	NA	NA	1	1	TypeV	DEDDh,DinG,WYL,cas14k,cas14j,Cas14u_CAS-V,cas3,RT,csa3,cas2,cas5,cas8c,cas7,cas4,cas1	NA,NA|53aa|down_9|CP019581.1_1314574_1314733_+	NA|460aa|up_9|CP019581.1_1296822_1298202_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|139aa|up_8|CP019581.1_1298215_1298632_-	cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway	NA|157aa|up_7|CP019581.1_1298636_1299107_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|410aa|up_6|CP019581.1_1299110_1300340_-	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|244aa|up_5|CP019581.1_1300361_1301093_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|306aa|up_4|CP019581.1_1301092_1302010_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|81aa|up_3|CP019581.1_1302019_1302262_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|328aa|up_2|CP019581.1_1302320_1303304_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|156aa|up_1|CP019581.1_1303300_1303768_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|149aa|up_0|CP019581.1_1303797_1304244_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|62aa|down_0|CP019581.1_1304728_1304914_-	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed	NA|250aa|down_1|CP019581.1_1305021_1305771_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|396aa|down_2|CP019581.1_1305947_1307135_+	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily	NA|280aa|down_3|CP019581.1_1307131_1307971_+	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|413aa|down_4|CP019581.1_1308274_1309513_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|756aa|down_5|CP019581.1_1309716_1311984_+	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|193aa|down_6|CP019581.1_1312084_1312663_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|178aa|down_7|CP019581.1_1312941_1313475_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|298aa|down_8|CP019581.1_1313684_1314578_+	cd17513, RMtype1_S_AveSPN6ORF1907P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Archaeoglobus veneficus SNP6 S subunit (S	NA|53aa|down_9|CP019581.1_1314574_1314733_+	NA
GCA_003955865.1_ASM395586v1	CP019581	Lactobacillus helveticus strain LH5, complete genome	3	2064058-2066355	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,DinG,WYL,cas14k,cas14j,Cas14u_CAS-V,cas3,RT,csa3,cas2,cas5,cas8c,cas7,cas4,cas1	Type I-U,Type I-C, Type I-U?	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	33,33,34	34	TypeI-U,TypeI-C,TypeI-U?	DEDDh,DinG,WYL,cas14k,cas14j,Cas14u_CAS-V,cas3,RT,csa3,cas2,cas5,cas8c,cas7,cas4,cas1	NA,NA|53aa|down_0|CP019581.1_2066590_2066749_+	NA|199aa|up_9|CP019581.1_2051876_2052473_+	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|514aa|up_8|CP019581.1_2052474_2054016_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|420aa|up_7|CP019581.1_2054028_2055288_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	cas3|845aa|up_6|CP019581.1_2055789_2058324_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|CP019581.1_2058338_2059082_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|658aa|up_4|CP019581.1_2059081_2061055_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|284aa|up_3|CP019581.1_2061057_2061909_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|219aa|up_2|CP019581.1_2061911_2062568_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|CP019581.1_2062564_2063596_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|CP019581.1_2063605_2063896_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|53aa|down_0|CP019581.1_2066590_2066749_+	NA	NA|888aa|down_1|CP019581.1_2066953_2069617_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_2|CP019581.1_2069625_2070456_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_3|CP019581.1_2070452_2071055_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|156aa|down_4|CP019581.1_2071057_2071525_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|444aa|down_5|CP019581.1_2071527_2072859_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|303aa|down_6|CP019581.1_2072890_2073799_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|645aa|down_7|CP019581.1_2074089_2076024_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|124aa|down_8|CP019581.1_2076115_2076487_+	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|417aa|down_9|CP019581.1_2076493_2077744_+	pfam04087, DUF389, Domain of unknown function (DUF389)
GCA_003955865.1_ASM395586v1	CP019583	Lactobacillus helveticus strain LH5 plasmid pCBTLH5_2, complete sequence	1	4548-4703	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTACGAGCGAAAGTCTAAAAAATAGAC	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,cas14k,cas14j,Cas14u_CAS-V,cas3,RT,csa3,cas2,cas5,cas8c,cas7,cas4,cas1	NA|253aa|up_2|CP019583.1_1386_2145_-,NA|76aa|up_1|CP019583.1_2613_2841_-,NA|51aa|down_1|CP019583.1_5912_6065_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|196aa|up_5|CP019583.1_0_588_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|93aa|up_4|CP019583.1_691_970_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|101aa|up_3|CP019583.1_959_1262_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|253aa|up_2|CP019583.1_1386_2145_-	NA	NA|76aa|up_1|CP019583.1_2613_2841_-	NA	NA|188aa|up_0|CP019583.1_2969_3533_-	pfam16046, FAM76, FAM76 protein	NA|65aa|down_0|CP019583.1_5434_5629_+	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain	NA|51aa|down_1|CP019583.1_5912_6065_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
