assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003952525.1_ASM395252v1	CP034451	Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 chromosome, complete genome	1	1048198-1048314	1	CRISPRCasFinder	no	csa3	csa3,RT,cas3,WYL,DEDDh	Type I-A	AATGCTCAAGCCCGTAAGCGGGCTTGAGTGGCGGCATGGATTTC	44	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh	NA|284aa|up_3|CP034451.1_1044189_1045041_-,NA|110aa|down_7|CP034451.1_1053496_1053826_-,NA|198aa|down_8|CP034451.1_1054066_1054660_+	NA|498aa|up_9|CP034451.1_1036929_1038423_-	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|312aa|up_8|CP034451.1_1038563_1039499_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|379aa|up_7|CP034451.1_1039777_1040914_-	cd06814, PLPDE_III_DSD_D-TA_like_3, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3	NA|427aa|up_6|CP034451.1_1040910_1042191_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|399aa|up_5|CP034451.1_1042190_1043387_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|209aa|up_4|CP034451.1_1043509_1044136_+	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain	NA|284aa|up_3|CP034451.1_1044189_1045041_-	NA	NA|268aa|up_2|CP034451.1_1045129_1045933_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|99aa|up_1|CP034451.1_1046147_1046444_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|551aa|up_0|CP034451.1_1046513_1048166_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|204aa|down_0|CP034451.1_1048391_1049003_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|120aa|down_1|CP034451.1_1049447_1049807_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|260aa|down_2|CP034451.1_1050004_1050784_-	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	csa3|112aa|down_3|CP034451.1_1050783_1051119_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|220aa|down_4|CP034451.1_1051286_1051946_-	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases	NA|60aa|down_5|CP034451.1_1052087_1052267_+	pfam05532, CsbD, CsbD-like	NA|383aa|down_6|CP034451.1_1052284_1053433_-	COG5555, COG5555, Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]	NA|110aa|down_7|CP034451.1_1053496_1053826_-	NA	NA|198aa|down_8|CP034451.1_1054066_1054660_+	NA	NA|276aa|down_9|CP034451.1_1054746_1055574_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCA_003952525.1_ASM395252v1	CP034451	Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 chromosome, complete genome	2	1232634-1232723	2	CRISPRCasFinder	no		csa3,RT,cas3,WYL,DEDDh	Orphan	CATCGCGGTCCGCGCGGGAATGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh	NA|103aa|up_9|CP034451.1_1222235_1222544_-,NA|32aa|up_8|CP034451.1_1222854_1222950_+,NA|72aa|up_7|CP034451.1_1224449_1224665_+,NA|98aa|up_3|CP034451.1_1229335_1229629_+,NA|30aa|up_2|CP034451.1_1230645_1230735_-,NA|311aa|up_1|CP034451.1_1231039_1231972_-,NA|77aa|up_0|CP034451.1_1232145_1232376_+,NA|181aa|down_0|CP034451.1_1232906_1233449_-,NA|105aa|down_3|CP034451.1_1239169_1239484_+,NA|120aa|down_4|CP034451.1_1239718_1240078_+,NA|102aa|down_7|CP034451.1_1242966_1243272_-,NA|199aa|down_8|CP034451.1_1243419_1244016_-,NA|102aa|down_9|CP034451.1_1244259_1244565_-	NA|103aa|up_9|CP034451.1_1222235_1222544_-	NA	NA|32aa|up_8|CP034451.1_1222854_1222950_+	NA	NA|72aa|up_7|CP034451.1_1224449_1224665_+	NA	NA|238aa|up_6|CP034451.1_1224688_1225402_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|503aa|up_5|CP034451.1_1226609_1228118_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|299aa|up_4|CP034451.1_1228181_1229078_+	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|98aa|up_3|CP034451.1_1229335_1229629_+	NA	NA|30aa|up_2|CP034451.1_1230645_1230735_-	NA	NA|311aa|up_1|CP034451.1_1231039_1231972_-	NA	NA|77aa|up_0|CP034451.1_1232145_1232376_+	NA	NA|181aa|down_0|CP034451.1_1232906_1233449_-	NA	NA|671aa|down_1|CP034451.1_1233750_1235763_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|118aa|down_2|CP034451.1_1235986_1236340_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|105aa|down_3|CP034451.1_1239169_1239484_+	NA	NA|120aa|down_4|CP034451.1_1239718_1240078_+	NA	NA|426aa|down_5|CP034451.1_1240182_1241460_+	pfam05559, DUF763, Protein of unknown function (DUF763)	NA|354aa|down_6|CP034451.1_1241633_1242695_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|102aa|down_7|CP034451.1_1242966_1243272_-	NA	NA|199aa|down_8|CP034451.1_1243419_1244016_-	NA	NA|102aa|down_9|CP034451.1_1244259_1244565_-	NA
GCA_003952525.1_ASM395252v1	CP034451	Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 chromosome, complete genome	3	1743053-1743151	3	CRISPRCasFinder	no		csa3,RT,cas3,WYL,DEDDh	Orphan	AATCCCAAAACCGCTGCGCACTTTTGGGCGACATGCA	37	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh	NA,NA	NA|539aa|up_9|CP034451.1_1726596_1728213_-	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|375aa|up_8|CP034451.1_1728230_1729355_-	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional	NA|308aa|up_7|CP034451.1_1729347_1730271_-	PRK09471, oppB, oligopeptide ABC transporter permease OppB	NA|531aa|up_6|CP034451.1_1730444_1732037_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|548aa|up_5|CP034451.1_1732425_1734069_-	cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	NA|667aa|up_4|CP034451.1_1734068_1736069_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|543aa|up_3|CP034451.1_1736265_1737894_-	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes	NA|482aa|up_2|CP034451.1_1737896_1739342_-	PRK00654, glgA, glycogen synthase GlgA	NA|422aa|up_1|CP034451.1_1739469_1740735_-	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|737aa|up_0|CP034451.1_1740796_1743007_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|821aa|down_0|CP034451.1_1743189_1745652_-	TIGR02093, Glycogen_phosphorylase, glycogen/starch/alpha-glucan phosphorylases	NA|261aa|down_1|CP034451.1_1745790_1746573_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|355aa|down_2|CP034451.1_1746575_1747640_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|345aa|down_3|CP034451.1_1747801_1748836_-	cd19973, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein	NA|409aa|down_4|CP034451.1_1749045_1750272_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|149aa|down_5|CP034451.1_1750273_1750720_+	COG4154, FucU, Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]	NA|308aa|down_6|CP034451.1_1750716_1751640_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|381aa|down_7|CP034451.1_1751893_1753036_+	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|282aa|down_8|CP034451.1_1753156_1754002_-	TIGR01331, 3'2'5'-bisphosphate_nucleotidase_CysQ, 3'(2'),5'-bisphosphate nucleotidase, bacterial	NA|648aa|down_9|CP034451.1_1753964_1755908_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
GCA_003952525.1_ASM395252v1	CP034451	Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 chromosome, complete genome	4	2469850-2469944	4	CRISPRCasFinder	no		csa3,RT,cas3,WYL,DEDDh	Orphan	GTTTTCATCCATGCCGTTCCGCAAAACCGCTGC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh	NA|381aa|up_8|CP034451.1_2460023_2461166_-,NA|142aa|up_5|CP034451.1_2464467_2464893_+,NA	NA|202aa|up_9|CP034451.1_2458661_2459267_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|381aa|up_8|CP034451.1_2460023_2461166_-	NA	NA|574aa|up_7|CP034451.1_2461237_2462959_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|83aa|up_6|CP034451.1_2463885_2464134_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|142aa|up_5|CP034451.1_2464467_2464893_+	NA	NA|431aa|up_4|CP034451.1_2465395_2466688_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|145aa|up_3|CP034451.1_2466884_2467319_+	pfam11164, DUF2948, Protein of unknown function (DUF2948)	NA|431aa|up_2|CP034451.1_2467328_2468621_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|162aa|up_1|CP034451.1_2468623_2469109_+	PRK02853, PRK02853, hypothetical protein; Provisional	NA|137aa|up_0|CP034451.1_2469329_2469740_+	COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction mechanisms]	NA|73aa|down_0|CP034451.1_2470341_2470560_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|209aa|down_1|CP034451.1_2470691_2471318_+	PRK01441, PRK01441, Maf-like protein; Reviewed	NA|74aa|down_2|CP034451.1_2471347_2471569_+	PRK01343, PRK01343, zinc-binding protein; Provisional	NA|912aa|down_3|CP034451.1_2472967_2475703_+	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	NA|320aa|down_4|CP034451.1_2475723_2476683_+	PRK00876, nadE, NAD(+) synthase	NA|674aa|down_5|CP034451.1_2476688_2478710_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|517aa|down_6|CP034451.1_2478709_2480260_+	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated	NA|89aa|down_7|CP034451.1_2480321_2480588_+	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|down_8|CP034451.1_2480608_2481301_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|421aa|down_9|CP034451.1_2481355_2482618_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]
GCA_003952525.1_ASM395252v1	CP034451	Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 chromosome, complete genome	5	5532102-5532181	5	CRISPRCasFinder	no		csa3,RT,cas3,WYL,DEDDh	Orphan	ACGGAAACCGCTTCACACTTTTCCT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh	NA|145aa|up_5|CP034451.1_5528191_5528626_-,NA|66aa|up_1|CP034451.1_5531202_5531400_-,NA|186aa|down_1|CP034451.1_5533671_5534229_+	NA|403aa|up_9|CP034451.1_5519917_5521126_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|496aa|up_8|CP034451.1_5521252_5522740_-	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|922aa|up_7|CP034451.1_5522923_5525689_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|772aa|up_6|CP034451.1_5525869_5528185_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|145aa|up_5|CP034451.1_5528191_5528626_-	NA	NA|296aa|up_4|CP034451.1_5528812_5529700_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|305aa|up_3|CP034451.1_5529716_5530631_-	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|159aa|up_2|CP034451.1_5530719_5531196_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|66aa|up_1|CP034451.1_5531202_5531400_-	NA	NA|162aa|up_0|CP034451.1_5531546_5532032_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|473aa|down_0|CP034451.1_5532250_5533669_+	PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome]	NA|186aa|down_1|CP034451.1_5533671_5534229_+	NA	NA|1350aa|down_2|CP034451.1_5534427_5538477_+	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|144aa|down_3|CP034451.1_5538528_5538960_-	pfam12802, MarR_2, MarR family	NA|601aa|down_4|CP034451.1_5539147_5540950_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|76aa|down_5|CP034451.1_5541054_5541282_-	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|66aa|down_6|CP034451.1_5541291_5541489_-	pfam13770, DUF4169, Domain of unknown function (DUF4169)	NA|177aa|down_7|CP034451.1_5541505_5542036_-	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown]	NA|228aa|down_8|CP034451.1_5542153_5542837_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|402aa|down_9|CP034451.1_5543011_5544217_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCA_003952525.1_ASM395252v1	CP034451	Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 chromosome, complete genome	6	5588063-5588207	6	CRISPRCasFinder	no		csa3,RT,cas3,WYL,DEDDh	Orphan	GATCGCCAAGAACAAGCTGGTCGACAAGGCCAAGAACTAAAGCGA	45	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,WYL,DEDDh	NA,NA|95aa|down_0|CP034451.1_5588432_5588717_-,NA|77aa|down_4|CP034451.1_5591481_5591712_-	NA|134aa|up_9|CP034451.1_5576374_5576776_-	pfam11964, SpoIIAA-like, SpoIIAA-like	NA|247aa|up_8|CP034451.1_5576979_5577720_+	COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]	NA|639aa|up_7|CP034451.1_5577812_5579729_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|639aa|up_6|CP034451.1_5579875_5581792_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|298aa|up_5|CP034451.1_5581858_5582752_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|136aa|up_4|CP034451.1_5582888_5583296_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|410aa|up_3|CP034451.1_5583388_5584618_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|244aa|up_2|CP034451.1_5584571_5585303_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|102aa|up_1|CP034451.1_5585286_5585592_-	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]	NA|226aa|up_0|CP034451.1_5586276_5586954_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|95aa|down_0|CP034451.1_5588432_5588717_-	NA	NA|195aa|down_1|CP034451.1_5588888_5589473_-	pfam07886, BA14K, BA14K-like protein	NA|371aa|down_2|CP034451.1_5589636_5590749_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|239aa|down_3|CP034451.1_5590751_5591468_+	cd15233, 7tmA_OR3A-like, olfactory receptor subfamily 3A3 and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors	NA|77aa|down_4|CP034451.1_5591481_5591712_-	NA	NA|406aa|down_5|CP034451.1_5591793_5593011_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|235aa|down_6|CP034451.1_5593007_5593712_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|430aa|down_7|CP034451.1_5593716_5595006_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|301aa|down_8|CP034451.1_5595141_5596044_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|337aa|down_9|CP034451.1_5596349_5597360_-	TIGR03160, cobT_DBIPRT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
