assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003952405.1_ASM395240v1	CP034445	Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 chromosome, complete genome	2	1984299-1984384	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CTTTGCCGAGGAGCTTACGGGTGGGGCAA	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA|79aa|up_4|CP034445.1_1979683_1979920_-,NA	NA|432aa|up_9|CP034445.1_1974446_1975742_-	PRK05962, PRK05962, amidase; Validated	NA|116aa|up_8|CP034445.1_1975863_1976211_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|361aa|up_7|CP034445.1_1976300_1977383_+	PRK07877, PRK07877, Rv1355c family protein	NA|368aa|up_6|CP034445.1_1977480_1978584_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|368aa|up_5|CP034445.1_1978583_1979687_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|79aa|up_4|CP034445.1_1979683_1979920_-	NA	NA|320aa|up_3|CP034445.1_1979916_1980876_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|302aa|up_2|CP034445.1_1980877_1981783_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|439aa|up_1|CP034445.1_1981852_1983169_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|219aa|up_0|CP034445.1_1983562_1984219_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|399aa|down_0|CP034445.1_1984431_1985628_+	COG5441, COG5441, Uncharacterized conserved protein [Function unknown]	NA|280aa|down_1|CP034445.1_1985639_1986479_+	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like	NA|139aa|down_2|CP034445.1_1986483_1986900_+	COG2140, COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]	NA|398aa|down_3|CP034445.1_1987074_1988268_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|537aa|down_4|CP034445.1_1988602_1990213_+	cd08517, PBP2_NikA_DppA_OppA_like_13, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|329aa|down_5|CP034445.1_1990336_1991323_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|277aa|down_6|CP034445.1_1991319_1992150_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|306aa|down_7|CP034445.1_1992230_1993148_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|259aa|down_8|CP034445.1_1993144_1993921_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|169aa|down_9|CP034445.1_1993985_1994492_+	pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid hydrolase
GCA_003952405.1_ASM395240v1	CP034445	Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 chromosome, complete genome	3	2433807-2433945	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CCGCAGCCGAAGGCGAGGACGCGCAATCAGGAAACCGTCCG	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA|106aa|up_2|CP034445.1_2431699_2432017_-,NA|101aa|up_0|CP034445.1_2433171_2433474_-,NA|76aa|down_1|CP034445.1_2435609_2435837_+,NA|191aa|down_3|CP034445.1_2436701_2437274_-	NA|301aa|up_9|CP034445.1_2424764_2425667_-	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH	NA|129aa|up_8|CP034445.1_2426084_2426471_-	PRK13290, ectC, L-ectoine synthase; Reviewed	NA|294aa|up_7|CP034445.1_2426650_2427532_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|334aa|up_6|CP034445.1_2427563_2428565_-	PRK13971, PRK13971, 4-hydroxyproline epimerase	NA|408aa|up_5|CP034445.1_2428640_2429864_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|312aa|up_4|CP034445.1_2429963_2430899_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|220aa|up_3|CP034445.1_2431012_2431672_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|106aa|up_2|CP034445.1_2431699_2432017_-	NA	NA|126aa|up_1|CP034445.1_2432282_2432660_-	pfam01638, HxlR, HxlR-like helix-turn-helix	NA|101aa|up_0|CP034445.1_2433171_2433474_-	NA	NA|499aa|down_0|CP034445.1_2433946_2435443_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|76aa|down_1|CP034445.1_2435609_2435837_+	NA	NA|294aa|down_2|CP034445.1_2435823_2436705_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|191aa|down_3|CP034445.1_2436701_2437274_-	NA	NA|147aa|down_4|CP034445.1_2437507_2437948_+	cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of  Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent	NA|721aa|down_5|CP034445.1_2437944_2440107_+	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|421aa|down_6|CP034445.1_2440150_2441413_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|383aa|down_7|CP034445.1_2441501_2442650_-	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane]	NA|172aa|down_8|CP034445.1_2443033_2443549_-	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed	NA|397aa|down_9|CP034445.1_2443590_2444781_-	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003952405.1_ASM395240v1	CP034445	Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 chromosome, complete genome	4	3331289-3331633	1	CRT	no		csa3,cas3,WYL,DEDDh	Orphan	AACGGCAACGGCAANGGCAAC	21	0	0	NA	NA	NA	6	6	Orphan	csa3,cas3,WYL,DEDDh	NA|202aa|up_8|CP034445.1_3323002_3323608_-,NA|234aa|up_5|CP034445.1_3326095_3326797_-,NA|149aa|down_0|CP034445.1_3331869_3332316_-	NA|263aa|up_9|CP034445.1_3322217_3323006_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|202aa|up_8|CP034445.1_3323002_3323608_-	NA	NA|400aa|up_7|CP034445.1_3323610_3324810_-	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed	NA|345aa|up_6|CP034445.1_3324985_3326020_+	PRK08229, PRK08229, 2-dehydropantoate 2-reductase; Provisional	NA|234aa|up_5|CP034445.1_3326095_3326797_-	NA	NA|130aa|up_4|CP034445.1_3326804_3327194_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|285aa|up_3|CP034445.1_3327302_3328157_-	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|282aa|up_2|CP034445.1_3328300_3329146_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|201aa|up_1|CP034445.1_3329258_3329861_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|274aa|up_0|CP034445.1_3330264_3331086_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|149aa|down_0|CP034445.1_3331869_3332316_-	NA	NA|236aa|down_1|CP034445.1_3332835_3333543_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|254aa|down_2|CP034445.1_3333692_3334454_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|480aa|down_3|CP034445.1_3334899_3336339_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|141aa|down_4|CP034445.1_3336490_3336913_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|278aa|down_5|CP034445.1_3337048_3337882_-	TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric form	NA|159aa|down_6|CP034445.1_3338021_3338498_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|517aa|down_7|CP034445.1_3338609_3340160_+	TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase	NA|298aa|down_8|CP034445.1_3340203_3341097_-	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|180aa|down_9|CP034445.1_3341652_3342192_+	PRK12514, PRK12514, RNA polymerase sigma factor; Provisional
GCA_003952405.1_ASM395240v1	CP034445	Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 chromosome, complete genome	5	5336462-5336556	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	TGGGACAACGACATGCATCAAGAAAGTTTTTGA	33	1	2	5336495-5336523|5336495-5336523	CP034445.1_100944-100972|CP034445.1_2937059-2937087	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA|119aa|up_3|CP034445.1_5332411_5332768_-,NA|493aa|down_7|CP034445.1_5342420_5343899_+,NA|232aa|down_8|CP034445.1_5343959_5344655_+	NA|115aa|up_9|CP034445.1_5324987_5325332_-	COG3324, COG3324, Predicted enzyme related to lactoylglutathione lyase [General function prediction only]	NA|895aa|up_8|CP034445.1_5325546_5328231_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|368aa|up_7|CP034445.1_5328372_5329476_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|368aa|up_6|CP034445.1_5329687_5330791_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|248aa|up_5|CP034445.1_5330936_5331680_+	cd10955, CE4_BH0857_like, Putative catalytic NodB homology domain of uncharacterized BH0857 protein from Bacillus halodurans and its bacterial homologs	NA|130aa|up_4|CP034445.1_5331818_5332208_-	COG2343, COG2343, Uncharacterized protein conserved in bacteria [Function unknown]	NA|119aa|up_3|CP034445.1_5332411_5332768_-	NA	NA|543aa|up_2|CP034445.1_5332959_5334588_+	PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional	NA|262aa|up_1|CP034445.1_5334669_5335455_+	pfam07386, DUF1499, Protein of unknown function (DUF1499)	NA|303aa|up_0|CP034445.1_5335455_5336364_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|197aa|down_0|CP034445.1_5336603_5337194_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|297aa|down_1|CP034445.1_5337413_5338304_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|185aa|down_2|CP034445.1_5338296_5338851_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|378aa|down_3|CP034445.1_5338865_5339999_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|303aa|down_4|CP034445.1_5339995_5340904_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|253aa|down_5|CP034445.1_5340908_5341667_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|242aa|down_6|CP034445.1_5341695_5342421_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|493aa|down_7|CP034445.1_5342420_5343899_+	NA	NA|232aa|down_8|CP034445.1_5343959_5344655_+	NA	NA|255aa|down_9|CP034445.1_5344676_5345441_+	pfam00685, Sulfotransfer_1, Sulfotransferase domain
GCA_003952405.1_ASM395240v1	CP034445	Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 chromosome, complete genome	6	6124771-6124854	5	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CCAAAAGTGTGCGGCGGTTTTGGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA|311aa|up_3|CP034445.1_6118250_6119183_-,NA|225aa|down_0|CP034445.1_6125066_6125741_+,NA|402aa|down_9|CP034445.1_6136303_6137509_+	NA|633aa|up_9|CP034445.1_6110902_6112801_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|283aa|up_8|CP034445.1_6113083_6113932_+	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|328aa|up_7|CP034445.1_6113964_6114948_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|185aa|up_6|CP034445.1_6114959_6115514_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|479aa|up_5|CP034445.1_6115752_6117189_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|353aa|up_4|CP034445.1_6117202_6118261_-	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	NA|311aa|up_3|CP034445.1_6118250_6119183_-	NA	NA|372aa|up_2|CP034445.1_6119452_6120568_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|266aa|up_1|CP034445.1_6120677_6121475_+	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane]	NA|988aa|up_0|CP034445.1_6121795_6124759_+	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional	NA|225aa|down_0|CP034445.1_6125066_6125741_+	NA	NA|154aa|down_1|CP034445.1_6125807_6126269_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|651aa|down_2|CP034445.1_6126449_6128402_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|185aa|down_3|CP034445.1_6128382_6128937_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|454aa|down_4|CP034445.1_6129031_6130393_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|463aa|down_5|CP034445.1_6130401_6131790_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|286aa|down_6|CP034445.1_6131786_6132644_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|419aa|down_7|CP034445.1_6133466_6134723_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|295aa|down_8|CP034445.1_6135298_6136183_+	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|402aa|down_9|CP034445.1_6136303_6137509_+	NA
