assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	1	600154-600246	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|CP034349.1_604065_604572_+,NA|239aa|down_5|CP034349.1_604733_605450_+	NA|210aa|up_9|CP034349.1_590020_590650_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|CP034349.1_591102_592041_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|CP034349.1_592250_592787_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|CP034349.1_592955_593432_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|CP034349.1_593471_594767_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|CP034349.1_594794_595316_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|CP034349.1_595814_596825_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_2|CP034349.1_597133_597517_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP034349.1_597513_599175_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP034349.1_599369_600005_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP034349.1_600444_601272_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP034349.1_601421_602372_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP034349.1_602426_603146_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP034349.1_603129_603930_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP034349.1_604065_604572_+	NA	NA|239aa|down_5|CP034349.1_604733_605450_+	NA	NA|263aa|down_6|CP034349.1_605618_606407_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP034349.1_606656_607031_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP034349.1_607977_608907_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP034349.1_609099_609324_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	2	664884-664983	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|CP034349.1_662821_662938_+,NA|230aa|down_3|CP034349.1_668728_669418_-,NA|130aa|down_5|CP034349.1_670054_670444_+,NA|100aa|down_6|CP034349.1_670581_670881_+	NA|336aa|up_9|CP034349.1_654617_655625_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|CP034349.1_656211_657009_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|CP034349.1_657369_658014_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|CP034349.1_658695_660846_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|CP034349.1_660991_661351_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|CP034349.1_661540_662257_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|CP034349.1_662256_662730_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|CP034349.1_662821_662938_+	NA	NA|215aa|up_1|CP034349.1_663082_663727_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|CP034349.1_663844_664711_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|CP034349.1_665000_666221_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|156aa|down_1|CP034349.1_666217_666685_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|down_2|CP034349.1_666927_668574_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|230aa|down_3|CP034349.1_668728_669418_-	NA	NA|148aa|down_4|CP034349.1_669544_669988_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_5|CP034349.1_670054_670444_+	NA	NA|100aa|down_6|CP034349.1_670581_670881_+	NA	NA|181aa|down_7|CP034349.1_670960_671503_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_8|CP034349.1_671597_672164_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_9|CP034349.1_672165_672624_-	PRK00124, PRK00124, YaiI/YqxD family protein
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	3	752618-752702	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	752644-752676|752644-752676	CP034349.1_1002300-1002332|CP034349.1_2253585-2253553	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|33aa|up_1|CP034349.1_751058_751157_+,NA	NA|357aa|up_9|CP034349.1_741067_742138_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|CP034349.1_742455_743511_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|CP034349.1_743674_744316_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|CP034349.1_744459_745326_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|CP034349.1_745689_746772_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|CP034349.1_746764_747439_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|CP034349.1_747499_748072_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|CP034349.1_748485_751017_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|CP034349.1_751058_751157_+	NA	NA|370aa|up_0|CP034349.1_751331_752442_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|CP034349.1_753210_754050_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|CP034349.1_754223_754874_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|CP034349.1_754870_755107_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|CP034349.1_755375_757361_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|CP034349.1_757368_760215_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|CP034349.1_760825_761758_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|CP034349.1_761763_762606_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|CP034349.1_762613_763099_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|CP034349.1_763106_764546_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|CP034349.1_764612_765548_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	4	810829-810908	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|187aa|up_9|CP034349.1_803803_804364_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|CP034349.1_804436_805054_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|CP034349.1_805209_805704_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|CP034349.1_806102_806525_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|CP034349.1_806672_807389_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|CP034349.1_807471_808011_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|CP034349.1_808160_808481_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|CP034349.1_808624_808981_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|CP034349.1_809138_809519_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|CP034349.1_809696_810575_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|CP034349.1_811164_811551_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP034349.1_811543_811840_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP034349.1_812089_813115_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP034349.1_813107_813803_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP034349.1_813820_814642_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|CP034349.1_814784_816005_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|CP034349.1_816018_817407_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|CP034349.1_817433_818006_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|CP034349.1_818177_818399_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|CP034349.1_818399_818672_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	5	876164-876249	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	876194-876219|876194-876219	CP034349.1_1994870-1994895|CP034349.1_2058556-2058581	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|CP034349.1_865053_866550_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|CP034349.1_866542_866872_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP034349.1_866883_867312_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP034349.1_867304_869710_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP034349.1_869840_870224_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP034349.1_870287_870881_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP034349.1_871295_871673_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP034349.1_872034_873162_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP034349.1_873469_874660_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP034349.1_874768_876013_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP034349.1_876407_877337_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP034349.1_877578_878958_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP034349.1_878947_880153_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP034349.1_880503_881835_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP034349.1_882160_882736_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP034349.1_882740_883265_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP034349.1_883280_883856_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP034349.1_884015_887492_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP034349.1_887492_891146_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP034349.1_891311_892214_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	6	1177667-1177759	6	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|CP034349.1_1167542_1168187_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|CP034349.1_1168193_1168835_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|CP034349.1_1169215_1169404_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|CP034349.1_1169846_1170221_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|CP034349.1_1170235_1171882_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|CP034349.1_1172070_1174131_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|CP034349.1_1174333_1174906_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|CP034349.1_1174910_1175897_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|CP034349.1_1175889_1176816_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|CP034349.1_1176808_1177543_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|CP034349.1_1177848_1178082_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|CP034349.1_1178197_1178929_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|CP034349.1_1179075_1182642_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|CP034349.1_1182641_1183892_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|CP034349.1_1183878_1184211_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|CP034349.1_1184236_1185604_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|CP034349.1_1186038_1186314_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|CP034349.1_1186501_1187005_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|CP034349.1_1187004_1187742_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|CP034349.1_1187844_1188195_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	7	1875867-1876009	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	55	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|CP034349.1_1868000_1868396_-,NA|51aa|up_6|CP034349.1_1868996_1869149_-,NA|77aa|down_9|CP034349.1_1894015_1894246_+	NA|274aa|up_9|CP034349.1_1865142_1865964_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|CP034349.1_1866419_1867805_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|CP034349.1_1868000_1868396_-	NA	NA|51aa|up_6|CP034349.1_1868996_1869149_-	NA	NA|200aa|up_5|CP034349.1_1869173_1869773_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|CP034349.1_1869931_1870402_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|CP034349.1_1870406_1871549_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|CP034349.1_1871684_1872413_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|CP034349.1_1872399_1873857_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|CP034349.1_1874115_1875177_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|CP034349.1_1883971_1884418_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|CP034349.1_1884514_1885465_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|CP034349.1_1885470_1885926_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|CP034349.1_1886006_1887296_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|CP034349.1_1887588_1888683_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|CP034349.1_1888873_1890610_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|CP034349.1_1890900_1891443_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|CP034349.1_1891745_1892783_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|CP034349.1_1892934_1893912_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|77aa|down_9|CP034349.1_1894015_1894246_+	NA
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	8	1909961-1910044	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCCCAACTTGCATTGCCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|CP034349.1_1904208_1904484_+,NA|129aa|up_1|CP034349.1_1908466_1908853_-,NA|138aa|down_1|CP034349.1_1911587_1912001_-,NA|37aa|down_2|CP034349.1_1912029_1912140_-,NA|31aa|down_6|CP034349.1_1915145_1915238_-	NA|419aa|up_9|CP034349.1_1902131_1903388_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|CP034349.1_1903390_1903591_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|CP034349.1_1903737_1904202_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|CP034349.1_1904208_1904484_+	NA	NA|406aa|up_5|CP034349.1_1904761_1905979_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|CP034349.1_1906091_1906721_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|CP034349.1_1906710_1907754_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|CP034349.1_1907750_1908452_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|CP034349.1_1908466_1908853_-	NA	NA|253aa|up_0|CP034349.1_1909069_1909828_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|CP034349.1_1910412_1911399_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|CP034349.1_1911587_1912001_-	NA	NA|37aa|down_2|CP034349.1_1912029_1912140_-	NA	NA|244aa|down_3|CP034349.1_1912225_1912957_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|CP034349.1_1912958_1914272_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|CP034349.1_1914563_1915064_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|CP034349.1_1915145_1915238_-	NA	DEDDh|185aa|down_7|CP034349.1_1915454_1916009_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|CP034349.1_1916075_1917146_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|CP034349.1_1917392_1917923_-	pfam11667, DUF3267, Putative zincin peptidase
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	9	1920624-1920815	1	CRT	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	1	8	1920703-1920736|1920703-1920736|1920703-1920736|1920703-1920736|1920703-1920736|1920703-1920736|1920703-1920736|1920703-1920736	CP034349.1_255743-255710|CP034349.1_335038-335005|CP034349.1_719512-719479|CP034349.1_752683-752716|CP034349.1_1028457-1028490|CP034349.1_1703308-1703275|CP034349.1_2219143-2219176|CP034349.1_2359420-2359387	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|37aa|up_9|CP034349.1_1912029_1912140_-,NA|31aa|up_5|CP034349.1_1915145_1915238_-,NA|49aa|down_0|CP034349.1_1921119_1921266_-	NA|37aa|up_9|CP034349.1_1912029_1912140_-	NA	NA|244aa|up_8|CP034349.1_1912225_1912957_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|CP034349.1_1912958_1914272_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|CP034349.1_1914563_1915064_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|CP034349.1_1915145_1915238_-	NA	DEDDh|185aa|up_4|CP034349.1_1915454_1916009_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|CP034349.1_1916075_1917146_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|CP034349.1_1917392_1917923_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|CP034349.1_1918092_1919454_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|CP034349.1_1919534_1920482_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|CP034349.1_1921119_1921266_-	NA	NA|476aa|down_1|CP034349.1_1921304_1922732_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|CP034349.1_1922744_1924202_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|CP034349.1_1924203_1924506_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|CP034349.1_1924872_1926411_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|CP034349.1_1926499_1927699_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|CP034349.1_1927711_1929715_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|CP034349.1_1929718_1931911_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|CP034349.1_1931907_1932600_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|CP034349.1_1932782_1933085_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	10	2103290-2103379	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|CP034349.1_2098161_2098392_-,NA|364aa|up_0|CP034349.1_2102181_2103273_+,NA|35aa|down_0|CP034349.1_2103714_2103819_-,NA|61aa|down_1|CP034349.1_2104251_2104434_-,NA|53aa|down_2|CP034349.1_2104498_2104657_+,NA|31aa|down_3|CP034349.1_2105093_2105186_+,NA|72aa|down_7|CP034349.1_2109509_2109725_+	NA|237aa|up_9|CP034349.1_2093779_2094490_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP034349.1_2094610_2095054_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP034349.1_2095253_2095667_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP034349.1_2096115_2097489_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP034349.1_2098161_2098392_-	NA	NA|313aa|up_4|CP034349.1_2098422_2099361_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP034349.1_2099796_2100462_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP034349.1_2100613_2100934_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP034349.1_2100935_2101916_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP034349.1_2102181_2103273_+	NA	NA|35aa|down_0|CP034349.1_2103714_2103819_-	NA	NA|61aa|down_1|CP034349.1_2104251_2104434_-	NA	NA|53aa|down_2|CP034349.1_2104498_2104657_+	NA	NA|31aa|down_3|CP034349.1_2105093_2105186_+	NA	NA|286aa|down_4|CP034349.1_2105315_2106173_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP034349.1_2106240_2107023_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP034349.1_2107254_2109060_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|72aa|down_7|CP034349.1_2109509_2109725_+	NA	NA|513aa|down_8|CP034349.1_2109740_2111279_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_9|CP034349.1_2111313_2113446_+	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	11	2180835-2180960	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_8|CP034349.1_2171241_2171409_+,NA|61aa|up_1|CP034349.1_2179757_2179940_-,NA	NA|283aa|up_9|CP034349.1_2169664_2170513_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|56aa|up_8|CP034349.1_2171241_2171409_+	NA	NA|809aa|up_7|CP034349.1_2171405_2173832_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|CP034349.1_2173891_2174746_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|CP034349.1_2174956_2175772_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|CP034349.1_2176066_2176492_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|CP034349.1_2176882_2177587_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|CP034349.1_2177623_2179288_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|CP034349.1_2179757_2179940_-	NA	NA|60aa|up_0|CP034349.1_2180589_2180769_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|CP034349.1_2181017_2182454_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|CP034349.1_2182802_2183201_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|CP034349.1_2183214_2183652_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|CP034349.1_2183900_2184695_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|CP034349.1_2184699_2185506_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|CP034349.1_2185495_2186356_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|CP034349.1_2186352_2187162_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_7|CP034349.1_2187694_2188063_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_8|CP034349.1_2188079_2189024_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|CP034349.1_2189098_2189488_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCA_003944865.1_ASM394486v1	CP034349	Staphylococcus aureus subsp. aureus strain 80wphwpl chromosome, complete genome	12	2707497-2707580	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	3	2707523-2707554|2707523-2707554|2707523-2707554	CP034349.1_2253553-2253522|CP034349.1_752676-752707|CP034349.1_1002390-1002421	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|197aa|up_7|CP034349.1_2702390_2702981_+,NA	NA|616aa|up_9|CP034349.1_2699500_2701348_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|349aa|up_8|CP034349.1_2701337_2702384_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|197aa|up_7|CP034349.1_2702390_2702981_+	NA	NA|114aa|up_6|CP034349.1_2703036_2703378_+	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|168aa|up_5|CP034349.1_2703486_2703990_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_4|CP034349.1_2703970_2704507_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|67aa|up_3|CP034349.1_2705280_2705481_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|CP034349.1_2705607_2706177_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|CP034349.1_2706429_2706825_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|CP034349.1_2706892_2707246_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|CP034349.1_2707798_2708638_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|CP034349.1_2708680_2709400_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|CP034349.1_2709399_2711277_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|CP034349.1_2711343_2712723_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|CP034349.1_2712866_2713220_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|CP034349.1_2713340_2713478_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
