assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003860425.1_ASM386042v1	CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1	400196-400293	1	CRISPRCasFinder	no	DEDDh	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Unclear	GCGGTGTCCGTGTGCTTGGGGCGTGAAAC	29	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|77aa|up_8|CP034193.1_387284_387515_+,NA|170aa|down_1|CP034193.1_401439_401949_-,NA|130aa|down_2|CP034193.1_401914_402304_-,NA|117aa|down_3|CP034193.1_402308_402659_-,NA|82aa|down_6|CP034193.1_405436_405682_-	NA|212aa|up_9|CP034193.1_386643_387279_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|77aa|up_8|CP034193.1_387284_387515_+	NA	NA|672aa|up_7|CP034193.1_387614_389630_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|954aa|up_6|CP034193.1_389639_392501_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	DEDDh|362aa|up_5|CP034193.1_392590_393676_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|290aa|up_4|CP034193.1_393894_394764_+	PRK05416, PRK05416, RNase adapter RapZ	NA|326aa|up_3|CP034193.1_394785_395763_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|313aa|up_2|CP034193.1_395780_396719_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|216aa|up_1|CP034193.1_396839_397487_-	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA	NA|197aa|up_0|CP034193.1_397600_398191_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|123aa|down_0|CP034193.1_400325_400694_-	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family	NA|170aa|down_1|CP034193.1_401439_401949_-	NA	NA|130aa|down_2|CP034193.1_401914_402304_-	NA	NA|117aa|down_3|CP034193.1_402308_402659_-	NA	NA|523aa|down_4|CP034193.1_402976_404545_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|275aa|down_5|CP034193.1_404599_405424_-	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol)	NA|82aa|down_6|CP034193.1_405436_405682_-	NA	NA|89aa|down_7|CP034193.1_406127_406394_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|62aa|down_8|CP034193.1_406405_406591_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|353aa|down_9|CP034193.1_406728_407787_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_003860425.1_ASM386042v1	CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	2	818708-820196	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas14j,cas9,cas1,cas2,csn2	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type II-C,Type II-B,Type II-A	GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	20,22,22,20	22	TypeII-C,TypeII-B,TypeII-A,TypeV	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|97aa|up_8|CP034193.1_805795_806086_-,NA|109aa|down_2|CP034193.1_823166_823493_+,NA|114aa|down_5|CP034193.1_825319_825661_+	NA|302aa|up_9|CP034193.1_804953_805859_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|97aa|up_8|CP034193.1_805795_806086_-	NA	NA|148aa|up_7|CP034193.1_806078_806522_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|271aa|up_6|CP034193.1_806536_807349_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|266aa|up_5|CP034193.1_808204_809002_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|656aa|up_4|CP034193.1_810244_812212_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	cas9|1382aa|up_3|CP034193.1_812469_816615_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|CP034193.1_816822_817728_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|CP034193.1_817705_818011_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|CP034193.1_818007_818679_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|299aa|down_0|CP034193.1_820543_821440_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|318aa|down_1|CP034193.1_821653_822607_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|109aa|down_2|CP034193.1_823166_823493_+	NA	NA|321aa|down_3|CP034193.1_823548_824511_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|250aa|down_4|CP034193.1_824510_825260_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|114aa|down_5|CP034193.1_825319_825661_+	NA	NA|745aa|down_6|CP034193.1_825676_827911_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|146aa|down_7|CP034193.1_827920_828358_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|163aa|down_8|CP034193.1_828713_829202_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|399aa|down_9|CP034193.1_829550_830747_+	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme
GCA_003860425.1_ASM386042v1	CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	3	838305-838393	3	CRISPRCasFinder	no		cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Orphan	GTCCCGGTTTTACAACCATGGGACGAGG	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA	NA|146aa|up_9|CP034193.1_827920_828358_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|163aa|up_8|CP034193.1_828713_829202_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|399aa|up_7|CP034193.1_829550_830747_+	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme	NA|220aa|up_6|CP034193.1_832105_832765_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|224aa|up_5|CP034193.1_832745_833417_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|up_4|CP034193.1_833427_834168_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|285aa|up_3|CP034193.1_834183_835038_+	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold	NA|248aa|up_2|CP034193.1_835349_836093_+	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|389aa|up_1|CP034193.1_836271_837438_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|271aa|up_0|CP034193.1_837456_838269_-	pfam04204, HTS, Homoserine O-succinyltransferase	NA|294aa|down_0|CP034193.1_839417_840299_+	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|280aa|down_1|CP034193.1_840376_841216_-	pfam03881, Fructosamin_kin, Fructosamine kinase	NA|327aa|down_2|CP034193.1_841217_842198_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|343aa|down_3|CP034193.1_842148_843177_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|432aa|down_4|CP034193.1_843552_844848_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|592aa|down_5|CP034193.1_844851_846627_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|228aa|down_6|CP034193.1_846951_847635_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|63aa|down_7|CP034193.1_847748_847937_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|150aa|down_8|CP034193.1_848001_848451_+	pfam09424, YqeY, Yqey-like protein	NA|328aa|down_9|CP034193.1_848598_849582_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
GCA_003860425.1_ASM386042v1	CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	4	1042415-1043159	4,2,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type III-B,Type III-D,Type III-C,Type III-A	GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC,GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC,AAATAAAAAGTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC,AGTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC	36,36,45,37	0	0	NA	NA	NA:NA:NA:NA	10,10,5,5	10	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|61aa|up_4|CP034193.1_1039998_1040181_-,NA|99aa|up_2|CP034193.1_1040711_1041008_-,NA|231aa|down_6|CP034193.1_1049581_1050274_-,NA|251aa|down_8|CP034193.1_1054792_1055545_-	NA|228aa|up_9|CP034193.1_1034588_1035272_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|256aa|up_8|CP034193.1_1035344_1036112_-	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|214aa|up_7|CP034193.1_1036104_1036746_-	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|561aa|up_6|CP034193.1_1037090_1038773_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|182aa|up_5|CP034193.1_1039321_1039867_-	pfam14066, DUF4256, Protein of unknown function (DUF4256)	NA|61aa|up_4|CP034193.1_1039998_1040181_-	NA	NA|86aa|up_3|CP034193.1_1040367_1040625_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|99aa|up_2|CP034193.1_1040711_1041008_-	NA	cas2|102aa|up_1|CP034193.1_1040997_1041303_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|303aa|up_0|CP034193.1_1041304_1042213_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	csm5gr7|339aa|down_0|CP034193.1_1043323_1044340_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|306aa|down_1|CP034193.1_1044336_1045254_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|221aa|down_2|CP034193.1_1045255_1045918_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|115aa|down_3|CP034193.1_1045930_1046275_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|776aa|down_4|CP034193.1_1046336_1048664_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|257aa|down_5|CP034193.1_1048644_1049415_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|231aa|down_6|CP034193.1_1049581_1050274_-	NA	NA|1480aa|down_7|CP034193.1_1050288_1054728_-	pfam07669, Eco57I, Eco57I restriction-modification methylase	NA|251aa|down_8|CP034193.1_1054792_1055545_-	NA	NA|187aa|down_9|CP034193.1_1055727_1056288_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family
GCA_003860425.1_ASM386042v1	CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	5	1218238-1219243	5,5,3	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC	28,28,28	0	0	NA	NA	NA:NA:NA	16,16,16	16	TypeI-E	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA	NA|312aa|up_9|CP034193.1_1205247_1206183_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|288aa|up_8|CP034193.1_1206154_1207018_-	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|470aa|up_7|CP034193.1_1207366_1208776_-	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|269aa|up_6|CP034193.1_1208868_1209675_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|306aa|up_5|CP034193.1_1209905_1210823_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|1060aa|up_4|CP034193.1_1210835_1214015_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|361aa|up_3|CP034193.1_1214014_1215097_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_2|CP034193.1_1215098_1216388_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_1|CP034193.1_1216387_1217353_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|151aa|up_0|CP034193.1_1217688_1218141_-	PRK05463, PRK05463, putative hydro-lyase	DEDDh|293aa|down_0|CP034193.1_1219272_1220151_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|313aa|down_1|CP034193.1_1220154_1221093_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|219aa|down_2|CP034193.1_1221089_1221746_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|236aa|down_3|CP034193.1_1221758_1222466_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|366aa|down_4|CP034193.1_1222446_1223544_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|195aa|down_5|CP034193.1_1223555_1224140_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|555aa|down_6|CP034193.1_1224156_1225821_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|914aa|down_7|CP034193.1_1225801_1228543_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|120aa|down_8|CP034193.1_1228772_1229132_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|476aa|down_9|CP034193.1_1229252_1230680_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter
