assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003860405.1_ASM386040v1	CP034170	Nakamurella sp. s14-144 chromosome, complete genome	1	1024201-1028577	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6e,cas5,cas7,cas8e,cas3	csa3,cas3,WYL,cas6e,cas5,cas7,cas8e,DEDDh,cas4	Type I-E	GGGATCACCCCCGCGTGTGCGGGGAACAT,GGATCACCCCCGCGTGTGCGGGGAACATN,GGGATCACCCCCGCGTGTGCGGGGAACAT	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	71,71,23	71	TypeI-E	csa3,cas3,WYL,cas6e,cas5,cas7,cas8e,DEDDh,cas4	NA|65aa|up_9|CP034170.1_1006933_1007128_+,NA|86aa|up_7|CP034170.1_1008816_1009074_-,NA|203aa|up_6|CP034170.1_1009338_1009947_-,NA	NA|65aa|up_9|CP034170.1_1006933_1007128_+	NA	NA|118aa|up_8|CP034170.1_1008466_1008820_-	pfam05534, HicB, HicB family	NA|86aa|up_7|CP034170.1_1008816_1009074_-	NA	NA|203aa|up_6|CP034170.1_1009338_1009947_-	NA	NA|157aa|up_5|CP034170.1_1010268_1010739_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|115aa|up_4|CP034170.1_1010716_1011061_+	pfam01934, DUF86, Protein of unknown function DUF86	NA|257aa|up_3|CP034170.1_1011240_1012011_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|240aa|up_2|CP034170.1_1013708_1014428_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|1262aa|up_1|CP034170.1_1014530_1018316_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|1256aa|up_0|CP034170.1_1018483_1022251_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	cas6e|208aa|down_0|CP034170.1_1028621_1029245_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|321aa|down_1|CP034170.1_1029217_1030180_-	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|443aa|down_2|CP034170.1_1030143_1031472_-	pfam09344, Cas_CT1975, CT1975-like protein	NA|208aa|down_3|CP034170.1_1031606_1032230_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|581aa|down_4|CP034170.1_1032266_1034009_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|971aa|down_5|CP034170.1_1034005_1036918_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|544aa|down_6|CP034170.1_1037232_1038864_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|324aa|down_7|CP034170.1_1038926_1039898_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|301aa|down_8|CP034170.1_1039894_1040797_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|259aa|down_9|CP034170.1_1040793_1041570_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCA_003860405.1_ASM386040v1	CP034170	Nakamurella sp. s14-144 chromosome, complete genome	2	2441128-2441243	2	CRISPRCasFinder	no		csa3,cas3,WYL,cas6e,cas5,cas7,cas8e,DEDDh,cas4	Orphan	CTCGGGTTTCGGTTGGGCCCCATGCTCGCGCGATCGGTTTAG	42	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas6e,cas5,cas7,cas8e,DEDDh,cas4	NA|71aa|up_3|CP034170.1_2437830_2438043_+,NA|157aa|down_0|CP034170.1_2441465_2441936_-,NA|286aa|down_3|CP034170.1_2444104_2444962_+	NA|230aa|up_9|CP034170.1_2431240_2431930_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|521aa|up_8|CP034170.1_2432025_2433588_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|209aa|up_7|CP034170.1_2433604_2434231_-	pfam03703, bPH_2, Bacterial PH domain	NA|233aa|up_6|CP034170.1_2434389_2435088_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|286aa|up_5|CP034170.1_2435097_2435955_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|538aa|up_4|CP034170.1_2436220_2437834_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|71aa|up_3|CP034170.1_2437830_2438043_+	NA	NA|223aa|up_2|CP034170.1_2438039_2438708_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|587aa|up_1|CP034170.1_2438716_2440477_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|168aa|up_0|CP034170.1_2440553_2441057_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|157aa|down_0|CP034170.1_2441465_2441936_-	NA	NA|468aa|down_1|CP034170.1_2442008_2443412_-	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|151aa|down_2|CP034170.1_2443578_2444031_+	pfam13772, AIG2_2, AIG2-like family	NA|286aa|down_3|CP034170.1_2444104_2444962_+	NA	NA|416aa|down_4|CP034170.1_2445160_2446408_-	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|496aa|down_5|CP034170.1_2446549_2448037_+	PRK13517, PRK13517, glutamate--cysteine ligase	NA|633aa|down_6|CP034170.1_2448252_2450151_+	cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers	NA|727aa|down_7|CP034170.1_2450147_2452328_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|329aa|down_8|CP034170.1_2452338_2453325_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|379aa|down_9|CP034170.1_2453436_2454573_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCA_003860405.1_ASM386040v1	CP034170	Nakamurella sp. s14-144 chromosome, complete genome	3	2974970-2975121	3	CRISPRCasFinder	no		csa3,cas3,WYL,cas6e,cas5,cas7,cas8e,DEDDh,cas4	Orphan	GCGGGCTTGGTGCGGGCTTGGTGCGGGCCGGGCCTGGCAGCGGGCTTGGTGCG	53	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas6e,cas5,cas7,cas8e,DEDDh,cas4	NA|145aa|up_7|CP034170.1_2965962_2966397_-,NA	NA|262aa|up_9|CP034170.1_2964253_2965039_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|295aa|up_8|CP034170.1_2965052_2965937_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|145aa|up_7|CP034170.1_2965962_2966397_-	NA	NA|347aa|up_6|CP034170.1_2966613_2967654_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|414aa|up_5|CP034170.1_2967630_2968872_-	pfam00756, Esterase, Putative esterase	NA|296aa|up_4|CP034170.1_2968880_2969768_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|310aa|up_3|CP034170.1_2969764_2970694_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|446aa|up_2|CP034170.1_2970750_2972088_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|330aa|up_1|CP034170.1_2972378_2973368_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|463aa|up_0|CP034170.1_2973473_2974862_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|168aa|down_0|CP034170.1_2975239_2975743_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|304aa|down_1|CP034170.1_2975787_2976699_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|308aa|down_2|CP034170.1_2976695_2977619_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|227aa|down_3|CP034170.1_2977639_2978320_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|390aa|down_4|CP034170.1_2978316_2979486_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|254aa|down_5|CP034170.1_2979506_2980268_-	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|338aa|down_6|CP034170.1_2980264_2981278_-	pfam14257, DUF4349, Domain of unknown function (DUF4349)	NA|249aa|down_7|CP034170.1_2981411_2982158_+	PRK08057, PRK08057, cobalt-precorrin-6x reductase; Reviewed	NA|321aa|down_8|CP034170.1_2982129_2983092_-	PRK01209, cobD, cobalamin biosynthesis protein	NA|187aa|down_9|CP034170.1_2983114_2983675_+	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase
