The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP023834	Escherichia coli strain 4/2-1 chromosome, complete genome	4735721	201313	274156	4735721	plate,transposase,tRNA,protease	Emiliania_huxleyi_virus(11.11%)	59	NA	NA
AZH42722.1|201313_202666_+|protease	zinc metalloprotease RseP	protease	NA	NA	NA	NA
AZH42723.1|202695_205128_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZH42724.1|205249_205735_+	chaperone protein Skp	NA	NA	NA	NA	NA
AZH42725.1|205738_206764_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZH42726.1|206868_207324_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZH42727.1|207327_208116_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZH42728.1|208115_209264_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZH42729.1|209260_209857_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	40.0	1.0e-26
AZH42730.1|209893_213376_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	2.2e-209
AZH42731.1|213388_214348_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AZH42732.1|214446_216588_+	lysine decarboxylase constitutive	NA	NA	NA	NA	NA
AZH42733.1|216644_217034_+	VOC family protein	NA	NA	NA	NA	NA
AZH42734.1|217098_218397_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AZH46833.1|218445_218700_-	protein rof	NA	NA	NA	NA	NA
AZH42735.1|218692_218893_-	hypothetical protein	NA	NA	NA	NA	NA
AZH42736.1|219058_219604_+	hypothetical protein	NA	NA	NA	NA	NA
AZH42737.1|219600_220023_+|tRNA	peptidyl-tRNA hydrolase ArfB	tRNA	NA	NA	NA	NA
AZH42738.1|220036_220747_+	lipoprotein NlpE	NA	NA	NA	NA	NA
AZH42739.1|220946_221771_-	endopeptidase	NA	NA	NA	NA	NA
AZH42740.1|221824_223543_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
AZH42741.1|223654_224362_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
AZH42742.1|224358_224763_-	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
AZH42743.1|224880_225696_-	methionine ABC transporter substrate-binding protein MetQ	NA	NA	NA	NA	NA
AZH42744.1|225735_226389_-	methionine ABC transporter	NA	NA	NA	NA	NA
AZH42745.1|226381_227413_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	39.7	9.4e-36
AZH42746.1|227600_228176_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZH42747.1|233935_234739_+	2,5-diketo-D-gluconic acid reductase B	NA	A0A1V0SDE7	Indivirus	36.2	2.4e-39
AZH42748.1|234735_235650_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZH42749.1|235890_236691_+	EEP domain-containing protein	NA	NA	NA	NA	NA
AZH42750.1|236694_237318_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZH42751.1|237365_238724_-	lytic transglycosylase	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.0	5.8e-09
AZH42752.1|238795_239551_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZH42753.1|239584_240307_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZH42754.1|240303_240771_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.7	1.0e-50
AZH46834.1|240835_241567_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.0	4.5e-40
AZH42755.1|242103_242889_+	hypothetical protein	NA	NA	NA	NA	NA
AZH42756.1|243025_243505_-	hypothetical protein	NA	NA	NA	NA	NA
AZH42757.1|243514_244429_-	hypothetical protein	NA	NA	NA	NA	NA
AZH42758.1|244472_244955_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AZH42759.1|244978_246331_-	hypothetical protein	NA	NA	NA	NA	NA
AZH42760.1|246341_249806_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
AZH42761.1|249884_251363_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AZH42762.1|251301_252045_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
AZH42763.1|252041_254807_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	30.8	1.8e-81
AZH42764.1|254815_255577_-	hypothetical protein	NA	NA	NA	NA	NA
AZH42765.1|255581_256913_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AZH42766.1|256915_257440_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AZH42767.1|257436_258717_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AZH42768.1|258741_259824_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AZH42769.1|259787_261638_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AZH42770.1|261641_262055_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AZH42771.1|262061_263537_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AZH42772.1|263587_263812_-	hypothetical protein	NA	NA	NA	NA	NA
AZH42773.1|263846_264347_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AZH42774.1|265041_265560_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AZH42775.1|265592_265730_+	hypothetical protein	NA	NA	NA	NA	NA
AZH42776.1|265769_267911_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.0	2.4e-25
AZH42777.1|272196_272589_+	hypothetical protein	NA	NA	NA	NA	NA
AZH42778.1|273019_274156_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP023834	Escherichia coli strain 4/2-1 chromosome, complete genome	4735721	1191954	1247996	4735721	tail,head,integrase,tRNA,holin,portal,capsid,terminase	Escherichia_phage(44.68%)	67	1187049:1187063	1193529:1193543
1187049:1187063	attL	GATCGCGATGTACGC	NA	NA	NA	NA
AZH43610.1|1191954_1193073_-|integrase	integrase	integrase	Q77Z04	Phage_21	44.4	1.6e-84
AZH43611.1|1193041_1193311_-	excisionase	NA	NA	NA	NA	NA
AZH43612.1|1193372_1195814_-	exonuclease	NA	V5UQJ3	Shigella_phage	46.9	3.1e-114
1193529:1193543	attR	GCGTACATCGCGATC	NA	NA	NA	NA
AZH43613.1|1195907_1196099_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AZH43614.1|1196095_1196284_-	cell division inhibition protein DicB	NA	NA	NA	NA	NA
AZH43615.1|1196852_1197071_-	hypothetical protein	NA	NA	NA	NA	NA
AZH43616.1|1197142_1197442_-	hypothetical protein	NA	NA	NA	NA	NA
AZH43617.1|1197425_1197584_-	hypothetical protein	NA	NA	NA	NA	NA
AZH46868.1|1197795_1198320_-	LexA family transcriptional repressor	NA	H9C160	Pectobacterium_phage	28.0	2.2e-12
AZH43618.1|1198525_1198768_+	hypothetical protein	NA	H9C161	Pectobacterium_phage	55.8	4.8e-07
AZH43619.1|1198751_1199177_+	Rha family transcriptional regulator	NA	NA	NA	NA	NA
AZH43620.1|1199248_1200319_+	phage replisome organizer	NA	A0A088CD36	Shigella_phage	56.6	2.6e-52
AZH43621.1|1200359_1200782_+	DUF977 domain-containing protein	NA	A0A0U2QQN3	Escherichia_phage	90.6	2.6e-64
AZH43622.1|1200839_1201196_+	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.8e-58
AZH43623.1|1201289_1201472_+	hypothetical protein	NA	A0A2R2Z308	Escherichia_phage	100.0	1.4e-27
AZH43624.1|1202124_1202304_+	hypothetical protein	NA	NA	NA	NA	NA
AZH43625.1|1202506_1202719_+	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	96.9	8.9e-26
AZH43626.1|1202886_1203165_+	hypothetical protein	NA	A0A077KB22	Edwardsiella_phage	37.1	6.1e-06
AZH43627.1|1203166_1204225_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	48.0	7.5e-89
AZH43628.1|1204225_1204606_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	63.6	1.3e-35
AZH43629.1|1204602_1205424_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	58.2	5.1e-77
AZH43630.1|1205788_1205905_+	DUF3927 domain-containing protein	NA	H6WZJ7	Escherichia_phage	93.5	3.6e-05
AZH43631.1|1206393_1206606_-	hypothetical protein	NA	NA	NA	NA	NA
AZH43632.1|1206676_1207012_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	74.8	1.4e-44
AZH43633.1|1207272_1207461_+	DUF1737 domain-containing protein	NA	H6WZJ9	Escherichia_phage	95.2	7.2e-27
AZH43634.1|1207457_1207619_+	hypothetical protein	NA	Q08JA2	Stx2-converting_phage	87.0	5.9e-14
AZH43635.1|1207768_1207984_+|holin	holin	holin	A0A2R2Z340	Escherichia_phage	98.6	3.4e-33
AZH43636.1|1207988_1208339_+	DUF1327 domain-containing protein	NA	K7PGU6	Enterobacteria_phage	94.0	1.4e-36
AZH43637.1|1208402_1208936_+	lysozyme	NA	Q08J98	Stx2-converting_phage	93.2	1.5e-98
AZH43638.1|1208872_1209100_-	hypothetical protein	NA	NA	NA	NA	NA
AZH43639.1|1209152_1209335_+	hypothetical protein	NA	A0A0P0ZE50	Stx2-converting_phage	77.0	2.2e-17
AZH43640.1|1209425_1209719_-	lipoprotein bor	NA	K7PL54	Enterobacteria_phage	90.7	5.9e-44
AZH43641.1|1209811_1209952_+	Rz1 lytic protein	NA	U5P461	Shigella_phage	84.6	1.0e-09
AZH43642.1|1210244_1210595_+	HNH endonuclease	NA	A0A1B5FP94	Escherichia_phage	96.6	8.0e-64
AZH43643.1|1210742_1211225_+|terminase	phage terminase small subunit P27 family	terminase	A0A1B5FPA0	Escherichia_phage	98.1	8.7e-85
AZH43644.1|1211224_1212982_+|terminase	terminase large subunit	terminase	A0A1B5FP96	Escherichia_phage	99.3	0.0e+00
AZH43645.1|1213129_1214356_+|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	83.3	3.7e-204
AZH43646.1|1214961_1216179_+|capsid	phage major capsid protein	capsid	A0A1W6JP20	Morganella_phage	71.6	5.9e-162
AZH43647.1|1216255_1216573_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1W6JNZ5	Morganella_phage	49.5	5.3e-22
AZH43648.1|1216581_1216920_+|head,tail	head-tail adaptor protein	head,tail	A0A1B5FP90	Escherichia_phage	90.2	7.5e-51
AZH43649.1|1216916_1217366_+	hypothetical protein	NA	S4TR46	Salmonella_phage	81.2	6.1e-64
AZH43650.1|1217362_1217647_+	hypothetical protein	NA	A0A1B5FP84	Escherichia_phage	95.7	3.7e-43
AZH43651.1|1217767_1218472_+|tail	phage tail protein	tail	A0A1B5FP82	Escherichia_phage	92.7	1.4e-112
AZH43652.1|1218471_1218858_+|tail	phage tail protein	tail	A0A1B5FP91	Escherichia_phage	100.0	8.9e-64
AZH46869.1|1218899_1219160_+	DUF4035 domain-containing protein	NA	A0A1B5FP87	Escherichia_phage	95.3	2.3e-39
AZH43653.1|1219206_1222434_+|tail	phage tail tape measure protein	tail	A0A1B5FPE2	Escherichia_phage	95.0	0.0e+00
AZH43654.1|1222411_1222768_+|tail	phage tail protein	tail	A0A0P0ZDL9	Stx2-converting_phage	66.7	2.8e-40
AZH43655.1|1222767_1223466_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	97.0	3.4e-130
AZH43656.1|1223471_1224215_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	97.2	4.5e-149
AZH43657.1|1224112_1224760_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	94.4	2.6e-108
AZH43658.1|1224820_1228300_+	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	89.9	0.0e+00
AZH43659.1|1228367_1228967_+	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	95.0	1.6e-107
AZH43660.1|1232920_1234444_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.7e-44
AZH43661.1|1234737_1235109_+	hypothetical protein	NA	NA	NA	NA	NA
AZH43662.1|1235842_1236373_+	chaperone of endosialidase	NA	A0A2D1UII2	Escherichia_phage	85.2	2.5e-69
AZH43663.1|1236528_1236666_+|capsid	nucleocapsid protein	capsid	NA	NA	NA	NA
AZH46870.1|1236610_1237237_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZH43664.1|1237833_1238697_-	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	28.7	6.7e-11
AZH43665.1|1238680_1239817_-	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	39.8	5.5e-29
AZH43666.1|1239795_1240011_-	hypothetical protein	NA	NA	NA	NA	NA
AZH43667.1|1240066_1241293_+	peptidase T	NA	NA	NA	NA	NA
AZH43668.1|1241341_1242463_-	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA	NA
AZH43669.1|1242538_1243999_-	sensor protein PhoQ	NA	NA	NA	NA	NA
AZH43670.1|1243998_1244670_-	two-component system response regulator PhoP	NA	NA	NA	NA	NA
AZH43671.1|1244838_1246209_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	1.2e-107
AZH46871.1|1246212_1246854_-	lysogenization protein HflD	NA	NA	NA	NA	NA
AZH43672.1|1246889_1247996_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 3
CP023834	Escherichia coli strain 4/2-1 chromosome, complete genome	4735721	2866129	2879312	4735721		Escherichia_phage(50.0%)	12	NA	NA
AZH45118.1|2866129_2868691_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
AZH45119.1|2868796_2869453_+	serine/threonine protein phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
AZH45120.1|2869503_2870271_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
AZH45121.1|2870466_2871375_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	5.1e-118
AZH45122.1|2871371_2872634_+	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
AZH45123.1|2872630_2873269_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
AZH45124.1|2873273_2874050_+	hypothetical protein	NA	NA	NA	NA	NA
AZH45125.1|2874138_2875503_+	permease	NA	NA	NA	NA	NA
AZH45126.1|2875596_2876589_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AZH45127.1|2876651_2877791_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
AZH45128.1|2877930_2878557_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
AZH45129.1|2878550_2879312_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
>prophage 4
CP023834	Escherichia coli strain 4/2-1 chromosome, complete genome	4735721	4141235	4206490	4735721	tail,plate,head,integrase,lysis,tRNA,transposase,holin,portal,capsid,terminase	Escherichia_phage(54.17%)	74	4132760:4132775	4184723:4184738
4132760:4132775	attL	CTGGCGTCCCAGCAGG	NA	NA	NA	NA
AZH46288.1|4141235_4141673_+|tRNA	D-aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AZH46289.1|4141669_4142659_+	acetyltransferase	NA	NA	NA	NA	NA
AZH46981.1|4143517_4143730_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AZH46290.1|4143971_4144190_+	hypothetical protein	NA	NA	NA	NA	NA
AZH46291.1|4144519_4145449_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA	NA
AZH46292.1|4145445_4146081_-	formate dehydrogenase cytochrome b556(fdo) subunit	NA	NA	NA	NA	NA
AZH46293.1|4146077_4146980_-	formate dehydrogenase-O iron-sulfur subunit	NA	NA	NA	NA	NA
AZH46294.1|4146992_4150043_-	formate dehydrogenase-N subunit alpha	NA	A0A077SK27	Escherichia_phage	23.8	1.1e-07
AZH46295.1|4150046_4150301_+	hypothetical protein	NA	NA	NA	NA	NA
AZH46296.1|4150236_4151070_+	sulfurtransferase FdhD	NA	NA	NA	NA	NA
AZH46297.1|4151222_4152278_+	DUF3829 domain-containing protein	NA	NA	NA	NA	NA
AZH46298.1|4152327_4154076_-	transcriptional regulator	NA	NA	NA	NA	NA
AZH46299.1|4154075_4155146_-	peptidase	NA	NA	NA	NA	NA
AZH46300.1|4155135_4156587_-	fructose-like PTS system EIIBC component	NA	NA	NA	NA	NA
AZH46301.1|4156597_4157044_-	fructose-like phosphotransferase enzyme IIA component	NA	NA	NA	NA	NA
AZH46302.1|4157344_4157659_-	L-rhamnose mutarotase	NA	NA	NA	NA	NA
AZH46303.1|4157668_4158493_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA	NA
AZH46304.1|4158943_4160203_-	L-rhamnose isomerase	NA	NA	NA	NA	NA
AZH46305.1|4160199_4161669_-	rhamnulokinase	NA	NA	NA	NA	NA
AZH46306.1|4161956_4162793_+	transcriptional activator RhaS	NA	NA	NA	NA	NA
AZH46307.1|4162776_4163715_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA	NA
AZH46308.1|4163711_4164746_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA	NA
AZH46309.1|4165030_4165651_+	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	59.3	8.4e-64
AZH46310.1|4165825_4165933_+	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
AZH46311.1|4165910_4166894_+	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
AZH46312.1|4167042_4167717_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZH46313.1|4167822_4169196_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.9	3.8e-16
AZH46314.1|4169192_4169891_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
AZH46982.1|4170040_4170541_+	periplasmic protein CpxP	NA	NA	NA	NA	NA
AZH46315.1|4170727_4171708_-|integrase	integrase	integrase	S4TP66	Salmonella_phage	100.0	4.7e-186
AZH46316.1|4171777_4172071_-	transcriptional regulator	NA	Q1JS37	Enterobacteria_phage	100.0	2.7e-49
AZH46317.1|4172207_4172480_+	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	100.0	1.4e-47
AZH46983.1|4172649_4173150_+	replication protein B	NA	M1SV55	Escherichia_phage	100.0	2.6e-92
AZH46318.1|4173213_4173438_+	DUF2732 domain-containing protein	NA	S4TP68	Salmonella_phage	100.0	4.7e-33
AZH46319.1|4173437_4173740_+	hypothetical protein	NA	A0A0F7LDT6	Escherichia_phage	96.0	2.5e-45
AZH46320.1|4173739_4173964_+	hypothetical protein	NA	A0A0F7LDI3	Escherichia_phage	98.6	3.8e-35
AZH46321.1|4173960_4174236_+	hypothetical protein	NA	A0A0F7LCM4	Escherichia_phage	100.0	2.3e-45
AZH46322.1|4174225_4176505_+	replication endonuclease	NA	Q858T4	Yersinia_virus	96.6	0.0e+00
AZH46323.1|4176744_4179228_-	helicase	NA	NA	NA	NA	NA
AZH46324.1|4179442_4180984_+|transposase	IS21 family transposase ISEc12	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
AZH46325.1|4180998_4181745_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
AZH46326.1|4181937_4182147_+	hypothetical protein	NA	M1TAP7	Escherichia_phage	83.0	2.7e-14
AZH46327.1|4182185_4183220_-|portal	phage portal protein	portal	U5N087	Enterobacteria_phage	99.1	1.6e-200
AZH46328.1|4183219_4184992_-	oxidoreductase	NA	A0A0F7LCK3	Escherichia_phage	100.0	0.0e+00
4184723:4184738	attR	CTGGCGTCCCAGCAGG	NA	NA	NA	NA
AZH46329.1|4185165_4186020_+|capsid	capsid scaffolding protein	capsid	Q778Z1	Enterobacteria_phage	99.6	1.7e-136
AZH46330.1|4186078_4187152_+|capsid	phage major capsid protein, P2 family	capsid	Q94MI3	Enterobacteria_phage	98.9	2.2e-200
AZH46331.1|4187155_4187899_+|terminase	terminase	terminase	Q94MJ2	Enterobacteria_phage	96.4	4.6e-125
AZH46332.1|4187998_4188508_+|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	100.0	1.1e-90
AZH46333.1|4188507_4188711_+|tail	phage tail protein	tail	A0A0F7LCN2	Escherichia_phage	98.5	2.6e-30
AZH46334.1|4188714_4188996_+|holin	holin	holin	A0A0F7LA12	Escherichia_phage	100.0	1.3e-43
AZH46335.1|4188995_4189493_+	lysozyme	NA	A0A0F7LBS0	Escherichia_phage	99.4	1.5e-92
AZH46336.1|4189507_4189933_+	protein lysA	NA	A0A0F7LBP4	Escherichia_phage	92.9	3.7e-55
AZH46337.1|4189920_4190346_+	protein lysB	NA	A0A0F7L9Y0	Escherichia_phage	94.3	1.3e-63
AZH46338.1|4190317_4190491_+|lysis	phage lysis protein	lysis	Q7Y4E1	Escherichia_virus	96.5	2.3e-24
AZH46339.1|4190453_4190921_+|tail	phage tail protein	tail	A0A0F7LA33	Escherichia_phage	98.7	3.3e-81
AZH46340.1|4190913_4191366_+	phage virion morphogenesis protein	NA	A0A0F7LDR6	Escherichia_phage	97.3	4.5e-75
AZH46341.1|4191432_4192068_+|plate	phage baseplate assembly protein V	plate	U5N3F0	Enterobacteria_phage	98.1	2.5e-111
AZH46342.1|4192064_4192412_+|plate	baseplate assembly protein	plate	A0A0F7LDQ1	Escherichia_phage	99.1	3.8e-58
AZH46343.1|4192416_4193325_+|plate	baseplate assembly protein	plate	U5N3T9	Enterobacteria_phage	99.3	3.7e-161
AZH46344.1|4193317_4193929_+|tail	phage tail protein I	tail	A0A0F7LA36	Escherichia_phage	99.5	1.4e-116
AZH46345.1|4195223_4195640_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	46.0	3.4e-21
AZH46984.1|4195611_4196214_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	75.5	2.5e-81
AZH46346.1|4196228_4196744_-|tail	phage tail protein	tail	A0A0F7LCR3	Escherichia_phage	56.8	5.0e-46
AZH46347.1|4196885_4197290_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	100.0	3.0e-70
AZH46348.1|4197286_4197634_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	2.6e-62
AZH46349.1|4199225_4199828_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	95.3	3.5e-99
AZH46350.1|4199887_4201078_+|tail	phage tail protein	tail	A0A0F7LBW9	Escherichia_phage	99.7	3.7e-225
AZH46351.1|4201090_4201609_+|tail	phage major tail tube protein	tail	A0A0F7LDZ1	Escherichia_phage	100.0	1.4e-93
AZH46352.1|4201665_4201941_+|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	98.9	2.2e-40
AZH46985.1|4201973_4202093_+|tail	GpE family phage tail protein	tail	A0A0F7LCR6	Escherichia_phage	100.0	1.0e-15
AZH46353.1|4202085_4204533_+|tail	phage tail tape measure protein	tail	M1T2S3	Escherichia_phage	95.2	0.0e+00
AZH46354.1|4204547_4205027_+|tail	phage tail protein	tail	A0A0F7LDE8	Escherichia_phage	99.4	1.5e-84
AZH46355.1|4205026_4206190_+	hypothetical protein	NA	U5N3V4	Enterobacteria_phage	99.5	4.8e-206
AZH46356.1|4206235_4206490_+	transcriptional regulator	NA	A0A0F7LDQ9	Escherichia_phage	100.0	6.1e-45
>prophage 5
CP023834	Escherichia coli strain 4/2-1 chromosome, complete genome	4735721	4576694	4655379	4735721	integrase,tRNA,protease,transposase,holin	Enterobacteria_phage(36.67%)	68	4624929:4624945	4631513:4631529
AZH46683.1|4576694_4578047_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AZH46684.1|4578101_4578488_+	cytochrome b562	NA	NA	NA	NA	NA
AZH46685.1|4578532_4578997_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	H6WXC9	Vibrio_phage	59.1	1.2e-51
AZH46686.1|4579156_4581295_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.6	9.1e-267
AZH46687.1|4581688_4583344_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
AZH46688.1|4583393_4584815_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
AZH46689.1|4584933_4585881_-	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	21.8	7.9e-13
AZH46690.1|4586259_4588956_+	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	27.4	9.0e-46
AZH46691.1|4589161_4589548_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
AZH46692.1|4589620_4590082_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZH46693.1|4590094_4591030_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	40.5	1.3e-52
AZH46694.1|4591033_4591168_-	pyrBI operon leader peptide	NA	NA	NA	NA	NA
AZH46695.1|4591297_4591480_+	hypothetical protein	NA	NA	NA	NA	NA
AZH46696.1|4591448_4591844_-	RidA family protein	NA	NA	NA	NA	NA
AZH46697.1|4591974_4592688_-	oxidoreductase	NA	NA	NA	NA	NA
AZH46698.1|4592758_4593352_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZH46699.1|4593496_4593949_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
AZH46700.1|4595871_4596876_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AZH46701.1|4597037_4597454_+	regulator of ribonuclease activity B	NA	NA	NA	NA	NA
AZH46702.1|4597499_4598003_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZH46703.1|4598195_4599383_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
AZH46704.1|4599434_4602290_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.3e-140
AZH46705.1|4602289_4602733_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AZH46706.1|4603086_4604598_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
AZH46707.1|4604864_4605965_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AZH46708.1|4605964_4607047_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZH46709.1|4607207_4608710_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.6	1.4e-83
AZH46710.1|4608837_4609857_-	aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	8.4e-45
AZH46711.1|4610300_4611554_+|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.0	3.9e-76
AZH46712.1|4611697_4612135_+	hypothetical protein	NA	NA	NA	NA	NA
AZH46713.1|4612127_4614800_+	ATPase	NA	NA	NA	NA	NA
AZH46714.1|4615214_4616756_+|transposase	IS21 family transposase ISEc12	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
AZH46715.1|4616770_4617517_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
AZH46716.1|4617570_4618173_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	96.2	1.2e-94
AZH46717.1|4618246_4618747_-	transactivation protein	NA	NA	NA	NA	NA
AZH46718.1|4619411_4620624_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.7	4.9e-169
AZH46719.1|4620590_4620830_+	hypothetical protein	NA	A0A0N7BTS3	Escherichia_phage	75.8	5.2e-06
AZH46720.1|4621342_4621609_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	100.0	4.9e-45
AZH46721.1|4621605_4622205_+	Ash-like/host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	89.1	5.1e-58
AZH46722.1|4622197_4622485_+	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	96.8	2.5e-47
AZH46723.1|4622477_4622933_+	hypothetical protein	NA	Q7M298	Enterobacteria_phage	98.2	4.7e-64
AZH46724.1|4623068_4623389_+	hypothetical protein	NA	NA	NA	NA	NA
AZH46725.1|4623403_4625737_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	98.6	0.0e+00
4624929:4624945	attL	TCATGGCCGAAATAGCC	NA	NA	NA	NA
AZH46726.1|4625950_4626286_+|integrase	integrase	integrase	Q38404	Enterobacteria_phage	100.0	2.7e-24
AZH46727.1|4627645_4628859_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.3	1.4e-168
AZH46728.1|4628937_4629327_+|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.2	1.9e-61
AZH46729.1|4629377_4629596_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZH46730.1|4629662_4630824_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.2	2.0e-50
AZH46731.1|4631104_4632382_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
4631513:4631529	attR	GGCTATTTCGGCCATGA	NA	NA	NA	NA
AZH46732.1|4632341_4632500_-|holin	choline transporter	holin	NA	NA	NA	NA
AZH46733.1|4632444_4634448_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	25.9	7.5e-21
AZH46734.1|4634595_4635735_-|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.5e-68
AZH46735.1|4635915_4636860_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
AZH46736.1|4636924_4637875_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AZH46737.1|4637879_4638968_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZH46738.1|4638970_4639792_-	carbohydrate transporter	NA	NA	NA	NA	NA
AZH46739.1|4641121_4641535_+	hypothetical protein	NA	NA	NA	NA	NA
AZH46740.1|4642092_4642860_-	Fe(3+) dicitrate transport ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
AZH46741.1|4642860_4643817_-	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
AZH46742.1|4643813_4644812_-	iron-dicitrate transporter permease subunit	NA	NA	NA	NA	NA
AZH46743.1|4644808_4645711_-	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
AZH46744.1|4645755_4648080_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZH46745.1|4648166_4649120_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AZH46746.1|4649116_4649638_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
AZH46747.1|4651388_4651646_+	biofilm development YmgB/AriR family protein	NA	NA	NA	NA	NA
AZH46748.1|4651808_4652018_-	hypothetical protein	NA	A0A0N7BTS3	Escherichia_phage	96.0	5.9e-06
AZH46749.1|4652381_4653755_+	esterase-like activity of phytase	NA	NA	NA	NA	NA
AZH46750.1|4653993_4655379_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.1	1.9e-257
>prophage 1
CP023835	Escherichia coli strain 4/2-1 plasmid p4_2_1.1, complete sequence	152425	38968	81809	152425	transposase,protease	Stx2-converting_phage(44.44%)	47	NA	NA
AZH47046.1|38968_40189_+|transposase	ISL3 family transposase ISKox3	transposase	NA	NA	NA	NA
AZH47047.1|40219_40561_+	conjugal transfer protein TrbA	NA	NA	NA	NA	NA
AZH47048.1|40541_40877_-	toxin ArtA	NA	NA	NA	NA	NA
AZH47049.1|40957_41242_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA	NA
AZH47050.1|41228_41783_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA	NA
AZH47051.1|41679_42087_+	conjugal transfer protein TrbJ	NA	NA	NA	NA	NA
AZH47052.1|42040_42433_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
AZH47053.1|42416_43793_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
AZH47054.1|43789_46615_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
AZH47055.1|46611_47121_+	conjugal transfer protein TraS	NA	NA	NA	NA	NA
AZH47056.1|47134_47866_+	complement resistance protein TraT	NA	NA	NA	NA	NA
AZH47057.1|48117_50298_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
AZH47058.1|50297_55418_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
AZH47059.1|55437_56184_+	type-F conjugative transfer system pilin acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	30.5	3.2e-09
AZH47060.1|56238_56799_+	conjugal transfer protein	NA	NA	NA	NA	NA
AZH47061.1|56932_57145_+	hypothetical protein	NA	NA	NA	NA	NA
AZH47062.1|57445_57628_-	hypothetical protein	NA	U5P0U6	Shigella_phage	100.0	8.5e-09
AZH47063.1|57589_58267_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
AZH47064.1|58266_58614_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AZH47065.1|58633_60205_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.9e-169
AZH47066.1|60908_61142_+	hypothetical protein	NA	NA	NA	NA	NA
AZH47067.1|61087_61330_-	hypothetical protein	NA	NA	NA	NA	NA
AZH47159.1|61385_61535_+	Hok/Gef family protein	NA	NA	NA	NA	NA
AZH47068.1|61818_62076_+	transcriptional regulator	NA	NA	NA	NA	NA
AZH47069.1|62111_62228_-	replication protein RepA	NA	NA	NA	NA	NA
AZH47160.1|62311_62386_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
AZH47070.1|64145_65366_+	arginine deiminase	NA	NA	NA	NA	NA
AZH47071.1|65376_66288_+	carbamate kinase	NA	NA	NA	NA	NA
AZH47072.1|66372_67377_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AZH47073.1|67424_68828_+	YfcC family protein	NA	NA	NA	NA	NA
AZH47074.1|68908_69388_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
AZH47075.1|69744_69966_-	hypothetical protein	NA	NA	NA	NA	NA
AZH47076.1|69996_70347_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	66.4	4.7e-40
AZH47077.1|70343_70706_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	88.5	9.0e-34
AZH47078.1|71544_72123_+	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
AZH47079.1|72535_72889_-	hypothetical protein	NA	NA	NA	NA	NA
AZH47080.1|73360_74383_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZH47081.1|74569_74821_-	hypothetical protein	NA	NA	NA	NA	NA
AZH47082.1|74787_75045_+	replication protein RepA	NA	NA	NA	NA	NA
AZH47083.1|75085_75196_-	replication protein RepA	NA	NA	NA	NA	NA
AZH47161.1|75279_75354_+	positive regulator of RepFIC repA1 expression	NA	NA	NA	NA	NA
AZH47084.1|75346_76204_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
AZH47085.1|76566_76953_+	hypothetical protein	NA	NA	NA	NA	NA
AZH47086.1|77162_78376_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.7	4.9e-169
AZH47087.1|78456_79110_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZH47088.1|79329_79794_+	mRNA interferase PemK	NA	NA	NA	NA	NA
AZH47089.1|81104_81809_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 2
CP023835	Escherichia coli strain 4/2-1 plasmid p4_2_1.1, complete sequence	152425	87719	117606	152425	transposase	Escherichia_phage(58.33%)	30	NA	NA
AZH47097.1|87719_88424_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AZH47163.1|88567_89122_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
AZH47164.1|89252_90083_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
AZH47098.1|90714_91419_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AZH47099.1|91525_92386_+	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA	NA
AZH47100.1|92398_92941_+	tunicamycin resistance protein	NA	NA	NA	NA	NA
AZH47101.1|94134_94839_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AZH47102.1|97160_97493_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA	NA
AZH47103.1|97539_98415_-	class A extended-spectrum beta-lactamase CTX-M-15	NA	A0A1B0VBP7	Salmonella_phage	82.4	1.1e-125
AZH47104.1|98670_99933_-|transposase	IS1380 family transposase ISEc9	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
AZH47105.1|100496_100760_+	hypothetical protein	NA	Q1MVP4	Enterobacteria_phage	100.0	3.1e-20
AZH47106.1|100705_101410_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AZH47107.1|102250_102433_-	hypothetical protein	NA	NA	NA	NA	NA
AZH47108.1|102385_102613_+	scsC protein	NA	NA	NA	NA	NA
AZH47109.1|102602_103109_+	protein disulfide oxidoreductase	NA	NA	NA	NA	NA
AZH47110.1|103291_104107_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit C	NA	NA	NA	NA	NA
AZH47111.1|104265_104451_+	hypothetical protein	NA	NA	NA	NA	NA
AZH47112.1|104393_106340_+	iron permease	NA	NA	NA	NA	NA
AZH47113.1|106380_106908_+	iron transporter	NA	NA	NA	NA	NA
AZH47114.1|107011_108391_+	DUF2318 domain-containing protein	NA	NA	NA	NA	NA
AZH47115.1|108393_109677_+	ABC transporter permease	NA	NA	NA	NA	NA
AZH47116.1|109636_110797_+	ABC transporter permease	NA	NA	NA	NA	NA
AZH47117.1|110801_111497_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	7.5e-29
AZH47118.1|111414_111969_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AZH47119.1|111993_112479_+	hypothetical protein	NA	NA	NA	NA	NA
AZH47120.1|112600_113344_+	histidine-type phosphatase	NA	NA	NA	NA	NA
AZH47121.1|113621_114326_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AZH47165.1|114350_114725_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	9.8e-60
AZH47122.1|115804_116827_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.1	1.0e-199
AZH47123.1|116823_117606_+|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
