assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	1	600088-600180	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|CP034098.1_603999_604506_+,NA|239aa|down_5|CP034098.1_604667_605384_+	NA|210aa|up_9|CP034098.1_589954_590584_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|CP034098.1_591036_591975_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|CP034098.1_592184_592721_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|CP034098.1_592889_593366_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|CP034098.1_593405_594701_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|CP034098.1_594728_595250_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|CP034098.1_595748_596759_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_2|CP034098.1_597067_597451_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP034098.1_597447_599109_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP034098.1_599303_599939_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP034098.1_600378_601206_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP034098.1_601355_602306_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP034098.1_602360_603080_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP034098.1_603063_603864_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP034098.1_603999_604506_+	NA	NA|239aa|down_5|CP034098.1_604667_605384_+	NA	NA|263aa|down_6|CP034098.1_605552_606341_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP034098.1_606590_606965_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP034098.1_607911_608841_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP034098.1_609033_609258_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	2	664818-664917	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|CP034098.1_662755_662872_+,NA|230aa|down_3|CP034098.1_668662_669352_-,NA|130aa|down_5|CP034098.1_669988_670378_+,NA|100aa|down_6|CP034098.1_670515_670815_+	NA|336aa|up_9|CP034098.1_654551_655559_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|CP034098.1_656145_656943_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|CP034098.1_657303_657948_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|CP034098.1_658629_660780_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|CP034098.1_660925_661285_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|CP034098.1_661474_662191_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|CP034098.1_662190_662664_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|CP034098.1_662755_662872_+	NA	NA|215aa|up_1|CP034098.1_663016_663661_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|CP034098.1_663778_664645_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|CP034098.1_664934_666155_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|156aa|down_1|CP034098.1_666151_666619_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|down_2|CP034098.1_666861_668508_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|230aa|down_3|CP034098.1_668662_669352_-	NA	NA|148aa|down_4|CP034098.1_669478_669922_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_5|CP034098.1_669988_670378_+	NA	NA|100aa|down_6|CP034098.1_670515_670815_+	NA	NA|181aa|down_7|CP034098.1_670894_671437_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_8|CP034098.1_671531_672098_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_9|CP034098.1_672099_672558_-	PRK00124, PRK00124, YaiI/YqxD family protein
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	3	752552-752636	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	752578-752610|752578-752610	CP034098.1_1002233-1002265|CP034098.1_2271991-2271959	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|33aa|up_1|CP034098.1_750992_751091_+,NA	NA|357aa|up_9|CP034098.1_741001_742072_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|CP034098.1_742389_743445_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|CP034098.1_743608_744250_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|CP034098.1_744393_745260_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|CP034098.1_745623_746706_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|CP034098.1_746698_747373_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|CP034098.1_747433_748006_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|CP034098.1_748419_750951_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|CP034098.1_750992_751091_+	NA	NA|370aa|up_0|CP034098.1_751265_752376_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|CP034098.1_753144_753984_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|CP034098.1_754157_754808_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|CP034098.1_754804_755041_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|CP034098.1_755309_757295_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|CP034098.1_757302_760149_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|CP034098.1_760759_761692_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|CP034098.1_761697_762540_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|CP034098.1_762547_763033_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|CP034098.1_763040_764480_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|CP034098.1_764546_765482_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	4	810763-810842	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|187aa|up_9|CP034098.1_803737_804298_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|CP034098.1_804370_804988_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|CP034098.1_805143_805638_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|CP034098.1_806036_806459_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|CP034098.1_806606_807323_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|CP034098.1_807405_807945_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|CP034098.1_808094_808415_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|CP034098.1_808558_808915_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|CP034098.1_809072_809453_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|CP034098.1_809630_810509_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|CP034098.1_811098_811485_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP034098.1_811477_811774_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP034098.1_812023_813049_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP034098.1_813041_813737_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP034098.1_813754_814576_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|CP034098.1_814718_815939_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|CP034098.1_815952_817341_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|CP034098.1_817367_817940_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|CP034098.1_818111_818333_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|CP034098.1_818333_818606_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	5	876098-876183	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	876128-876153|876128-876153	CP034098.1_2014677-2014702|CP034098.1_2076960-2076985	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|CP034098.1_864987_866484_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|CP034098.1_866476_866806_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP034098.1_866817_867246_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP034098.1_867238_869644_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP034098.1_869774_870158_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP034098.1_870221_870815_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP034098.1_871229_871607_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP034098.1_871968_873096_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP034098.1_873403_874594_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP034098.1_874702_875947_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP034098.1_876341_877271_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP034098.1_877512_878892_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP034098.1_878881_880087_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP034098.1_880437_881769_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP034098.1_882094_882670_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP034098.1_882674_883199_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP034098.1_883214_883790_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP034098.1_883949_887426_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP034098.1_887426_891080_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP034098.1_891245_892148_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	6	1177600-1177692	6	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|CP034098.1_1167474_1168119_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|CP034098.1_1168125_1168767_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|CP034098.1_1169147_1169336_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|CP034098.1_1169778_1170153_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|CP034098.1_1170167_1171814_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|CP034098.1_1172003_1174064_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|CP034098.1_1174266_1174839_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|CP034098.1_1174843_1175830_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|CP034098.1_1175822_1176749_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|CP034098.1_1176741_1177476_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|CP034098.1_1177781_1178015_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|CP034098.1_1178130_1178862_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|CP034098.1_1179008_1182575_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|CP034098.1_1182574_1183825_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|CP034098.1_1183811_1184144_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|CP034098.1_1184169_1185537_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|CP034098.1_1185971_1186247_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|CP034098.1_1186434_1186938_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|CP034098.1_1186937_1187675_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|CP034098.1_1187777_1188128_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	7	1895675-1895817	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	55	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|CP034098.1_1887808_1888204_-,NA|51aa|up_6|CP034098.1_1888804_1888957_-,NA|77aa|down_9|CP034098.1_1913819_1914050_+	NA|274aa|up_9|CP034098.1_1884950_1885772_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|CP034098.1_1886227_1887613_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|CP034098.1_1887808_1888204_-	NA	NA|51aa|up_6|CP034098.1_1888804_1888957_-	NA	NA|200aa|up_5|CP034098.1_1888981_1889581_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|CP034098.1_1889739_1890210_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|CP034098.1_1890214_1891357_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|CP034098.1_1891492_1892221_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|CP034098.1_1892207_1893665_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|CP034098.1_1893923_1894985_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|CP034098.1_1903775_1904222_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|CP034098.1_1904318_1905269_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|CP034098.1_1905274_1905730_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|CP034098.1_1905810_1907100_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|CP034098.1_1907392_1908487_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|CP034098.1_1908677_1910414_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|CP034098.1_1910704_1911247_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|CP034098.1_1911549_1912587_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|CP034098.1_1912738_1913716_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|77aa|down_9|CP034098.1_1913819_1914050_+	NA
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	8	1929765-1929848	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCCCAACTTGCATTGCCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|CP034098.1_1924012_1924288_+,NA|129aa|up_1|CP034098.1_1928270_1928657_-,NA|138aa|down_1|CP034098.1_1931391_1931805_-,NA|37aa|down_2|CP034098.1_1931833_1931944_-,NA|31aa|down_6|CP034098.1_1934949_1935042_-	NA|419aa|up_9|CP034098.1_1921935_1923192_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|CP034098.1_1923194_1923395_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|CP034098.1_1923541_1924006_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|CP034098.1_1924012_1924288_+	NA	NA|406aa|up_5|CP034098.1_1924565_1925783_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|CP034098.1_1925895_1926525_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|CP034098.1_1926514_1927558_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|CP034098.1_1927554_1928256_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|CP034098.1_1928270_1928657_-	NA	NA|253aa|up_0|CP034098.1_1928873_1929632_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|CP034098.1_1930216_1931203_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|CP034098.1_1931391_1931805_-	NA	NA|37aa|down_2|CP034098.1_1931833_1931944_-	NA	NA|244aa|down_3|CP034098.1_1932029_1932761_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|CP034098.1_1932762_1934076_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|CP034098.1_1934367_1934868_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|CP034098.1_1934949_1935042_-	NA	DEDDh|185aa|down_7|CP034098.1_1935258_1935813_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|CP034098.1_1935879_1936950_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|CP034098.1_1937196_1937727_-	pfam11667, DUF3267, Putative zincin peptidase
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	9	1940428-1940619	1	CRT	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	1	8	1940507-1940540|1940507-1940540|1940507-1940540|1940507-1940540|1940507-1940540|1940507-1940540|1940507-1940540|1940507-1940540	CP034098.1_255869-255836|CP034098.1_335161-335128|CP034098.1_719446-719413|CP034098.1_752617-752650|CP034098.1_1028390-1028423|CP034098.1_1723114-1723081|CP034098.1_2237549-2237582|CP034098.1_2377828-2377795	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|37aa|up_9|CP034098.1_1931833_1931944_-,NA|31aa|up_5|CP034098.1_1934949_1935042_-,NA|49aa|down_0|CP034098.1_1940923_1941070_-	NA|37aa|up_9|CP034098.1_1931833_1931944_-	NA	NA|244aa|up_8|CP034098.1_1932029_1932761_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|CP034098.1_1932762_1934076_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|CP034098.1_1934367_1934868_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|CP034098.1_1934949_1935042_-	NA	DEDDh|185aa|up_4|CP034098.1_1935258_1935813_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|CP034098.1_1935879_1936950_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|CP034098.1_1937196_1937727_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|CP034098.1_1937896_1939258_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|CP034098.1_1939338_1940286_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|CP034098.1_1940923_1941070_-	NA	NA|476aa|down_1|CP034098.1_1941108_1942536_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|CP034098.1_1942548_1944006_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|CP034098.1_1944007_1944310_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|CP034098.1_1944676_1946215_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|CP034098.1_1946303_1947503_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|CP034098.1_1947515_1949519_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|CP034098.1_1949522_1951715_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|CP034098.1_1951711_1952404_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|CP034098.1_1952586_1952889_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	10	2121694-2121783	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|CP034098.1_2116565_2116796_-,NA|364aa|up_0|CP034098.1_2120585_2121677_+,NA|35aa|down_0|CP034098.1_2122118_2122223_-,NA|61aa|down_1|CP034098.1_2122655_2122838_-,NA|53aa|down_2|CP034098.1_2122902_2123061_+,NA|31aa|down_3|CP034098.1_2123497_2123590_+,NA|72aa|down_7|CP034098.1_2127913_2128129_+	NA|237aa|up_9|CP034098.1_2112183_2112894_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP034098.1_2113014_2113458_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP034098.1_2113657_2114071_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP034098.1_2114519_2115893_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP034098.1_2116565_2116796_-	NA	NA|313aa|up_4|CP034098.1_2116826_2117765_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP034098.1_2118200_2118866_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP034098.1_2119017_2119338_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP034098.1_2119339_2120320_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP034098.1_2120585_2121677_+	NA	NA|35aa|down_0|CP034098.1_2122118_2122223_-	NA	NA|61aa|down_1|CP034098.1_2122655_2122838_-	NA	NA|53aa|down_2|CP034098.1_2122902_2123061_+	NA	NA|31aa|down_3|CP034098.1_2123497_2123590_+	NA	NA|286aa|down_4|CP034098.1_2123719_2124577_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP034098.1_2124644_2125427_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP034098.1_2125658_2127464_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|72aa|down_7|CP034098.1_2127913_2128129_+	NA	NA|513aa|down_8|CP034098.1_2128144_2129683_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_9|CP034098.1_2129717_2131850_+	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	11	2140708-2140909	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|53aa|up_9|CP034098.1_2122902_2123061_+,NA|31aa|up_8|CP034098.1_2123497_2123590_+,NA|72aa|up_4|CP034098.1_2127913_2128129_+,NA	NA|53aa|up_9|CP034098.1_2122902_2123061_+	NA	NA|31aa|up_8|CP034098.1_2123497_2123590_+	NA	NA|286aa|up_7|CP034098.1_2123719_2124577_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_6|CP034098.1_2124644_2125427_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_5|CP034098.1_2125658_2127464_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|72aa|up_4|CP034098.1_2127913_2128129_+	NA	NA|513aa|up_3|CP034098.1_2128144_2129683_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|CP034098.1_2129717_2131850_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|CP034098.1_2131861_2132296_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|CP034098.1_2132295_2133402_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|CP034098.1_2141397_2142753_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|CP034098.1_2142779_2143712_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|CP034098.1_2143713_2144523_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|CP034098.1_2144712_2145621_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|CP034098.1_2151838_2152903_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|CP034098.1_2153050_2154493_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|CP034098.1_2154681_2155155_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|CP034098.1_2155276_2156620_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|CP034098.1_2156797_2157481_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|CP034098.1_2157499_2158687_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	12	2199241-2199366	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_8|CP034098.1_2189647_2189815_+,NA|61aa|up_1|CP034098.1_2198163_2198346_-,NA	NA|283aa|up_9|CP034098.1_2188070_2188919_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|56aa|up_8|CP034098.1_2189647_2189815_+	NA	NA|809aa|up_7|CP034098.1_2189811_2192238_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|CP034098.1_2192297_2193152_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|CP034098.1_2193362_2194178_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|CP034098.1_2194472_2194898_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|CP034098.1_2195288_2195993_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|CP034098.1_2196029_2197694_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|CP034098.1_2198163_2198346_-	NA	NA|60aa|up_0|CP034098.1_2198995_2199175_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|CP034098.1_2199423_2200860_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|CP034098.1_2201208_2201607_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|CP034098.1_2201620_2202058_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|CP034098.1_2202306_2203101_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|CP034098.1_2203105_2203912_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|CP034098.1_2203901_2204762_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|CP034098.1_2204758_2205568_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_7|CP034098.1_2206100_2206469_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_8|CP034098.1_2206485_2207430_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|CP034098.1_2207504_2207894_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCA_003855575.1_ASM385557v1	CP034098	Staphylococcus aureus strain 80wphwpl_v1 chromosome, complete genome	13	2725908-2725991	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	3	2725934-2725965|2725934-2725965|2725934-2725965	CP034098.1_2271959-2271928|CP034098.1_752610-752641|CP034098.1_1002323-1002354	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|197aa|up_7|CP034098.1_2720801_2721392_+,NA	NA|616aa|up_9|CP034098.1_2717911_2719759_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|349aa|up_8|CP034098.1_2719748_2720795_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|197aa|up_7|CP034098.1_2720801_2721392_+	NA	NA|114aa|up_6|CP034098.1_2721447_2721789_+	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|168aa|up_5|CP034098.1_2721897_2722401_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_4|CP034098.1_2722381_2722918_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|67aa|up_3|CP034098.1_2723691_2723892_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|CP034098.1_2724018_2724588_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|CP034098.1_2724840_2725236_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|CP034098.1_2725303_2725657_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|CP034098.1_2726209_2727049_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|CP034098.1_2727091_2727811_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|CP034098.1_2727810_2729688_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|CP034098.1_2729754_2731134_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|CP034098.1_2731277_2731631_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|CP034098.1_2731751_2731889_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
