assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003855335.1_ASM385533v1	CP034053	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 chromosome, complete genome	1	2220604-2221182	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTCT,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,29,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	6,9,9	9	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j	NA|79aa|up_3|CP034053.1_2216101_2216338_+,NA|60aa|down_0|CP034053.1_2221359_2221539_+	NA|411aa|up_9|CP034053.1_2207534_2208767_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_8|CP034053.1_2209332_2209767_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_7|CP034053.1_2209882_2211082_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_6|CP034053.1_2211377_2212535_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_5|CP034053.1_2212577_2214728_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_4|CP034053.1_2214974_2216054_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|79aa|up_3|CP034053.1_2216101_2216338_+	NA	NA|363aa|up_2|CP034053.1_2216356_2217445_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|CP034053.1_2217518_2219288_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|CP034053.1_2219280_2220351_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|60aa|down_0|CP034053.1_2221359_2221539_+	NA	cas3|872aa|down_1|CP034053.1_2221593_2224209_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_2|CP034053.1_2224212_2225736_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_3|CP034053.1_2225747_2226314_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_4|CP034053.1_2226306_2226954_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_5|CP034053.1_2226983_2228018_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_6|CP034053.1_2228051_2228747_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_7|CP034053.1_2228746_2229622_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_8|CP034053.1_2229599_2229887_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_9|CP034053.1_2230877_2231993_+	PHA02053, PHA02053, hypothetical protein
GCA_003855335.1_ASM385533v1	CP034053	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 chromosome, complete genome	2	2229935-2230642	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTCT,GTCTTCCCCACGCACGTGGGGGTGTTTCT	28,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	10,11,11	11	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j	NA|60aa|up_8|CP034053.1_2221359_2221539_+,NA	NA|357aa|up_9|CP034053.1_2219280_2220351_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|60aa|up_8|CP034053.1_2221359_2221539_+	NA	cas3|872aa|up_7|CP034053.1_2221593_2224209_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|CP034053.1_2224212_2225736_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|CP034053.1_2225747_2226314_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|CP034053.1_2226306_2226954_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|CP034053.1_2226983_2228018_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_2|CP034053.1_2228051_2228747_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|CP034053.1_2228746_2229622_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|CP034053.1_2229599_2229887_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|CP034053.1_2230877_2231993_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|CP034053.1_2232003_2232687_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|CP034053.1_2232747_2233119_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|CP034053.1_2233623_2234376_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|CP034053.1_2234378_2236163_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|CP034053.1_2236176_2237514_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|CP034053.1_2237597_2238221_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|CP034053.1_2238217_2238877_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|CP034053.1_2238926_2239664_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|CP034053.1_2239660_2239891_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCA_003855335.1_ASM385533v1	CP034053	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 chromosome, complete genome	3	4226941-4227069	3	CRISPRCasFinder	no	DEDDh	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Unclear	TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j	NA,NA|70aa|down_7|CP034053.1_4233124_4233334_+	NA|428aa|up_9|CP034053.1_4216689_4217973_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|CP034053.1_4218108_4219509_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|CP034053.1_4219554_4220247_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|CP034053.1_4220332_4220731_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|CP034053.1_4220788_4222033_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|CP034053.1_4222138_4222597_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|CP034053.1_4222854_4224312_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|CP034053.1_4224354_4224807_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|CP034053.1_4224809_4225865_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|CP034053.1_4226024_4226885_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|CP034053.1_4227107_4227323_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|CP034053.1_4227325_4228549_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|CP034053.1_4228561_4229158_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|CP034053.1_4229164_4229803_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|CP034053.1_4229795_4230590_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|CP034053.1_4230582_4231821_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|CP034053.1_4231824_4233168_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|70aa|down_7|CP034053.1_4233124_4233334_+	NA	NA|247aa|down_8|CP034053.1_4233579_4234320_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_9|CP034053.1_4234290_4235058_-	pfam13230, GATase_4, Glutamine amidotransferases class-II
GCA_003855335.1_ASM385533v1	CP034054	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence	1	188374-189005	1	CRISPRCasFinder	no	DinG	RT,c2c9_V-U4,cas14j,DinG	Type IV-A	CCGATAACCCCCGCACACGGGGG	23	0	0	NA	NA	NA	10	10	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j	NA|69aa|up_8|CP034054.1_180000_180207_+,NA|236aa|down_1|CP034054.1_190111_190819_-,NA|264aa|down_4|CP034054.1_193258_194050_-,NA|137aa|down_7|CP034054.1_196477_196888_-	NA|550aa|up_9|CP034054.1_178348_179998_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|69aa|up_8|CP034054.1_180000_180207_+	NA	NA|407aa|up_7|CP034054.1_180266_181487_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|134aa|up_6|CP034054.1_181523_181925_-	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed	NA|110aa|up_5|CP034054.1_182069_182399_+	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur	NA|157aa|up_4|CP034054.1_183428_183899_-	pfam08808, RES, RES domain	NA|148aa|up_3|CP034054.1_183895_184339_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|424aa|up_2|CP034054.1_184439_185711_-	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|141aa|up_1|CP034054.1_185710_186133_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|141aa|up_0|CP034054.1_187708_188131_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|264aa|down_0|CP034054.1_189075_189867_-	pfam08317, Spc7, Spc7 kinetochore protein	NA|236aa|down_1|CP034054.1_190111_190819_-	NA	DinG|625aa|down_2|CP034054.1_190812_192687_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|189aa|down_3|CP034054.1_192689_193256_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|264aa|down_4|CP034054.1_193258_194050_-	NA	NA|138aa|down_5|CP034054.1_194112_194526_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|335aa|down_6|CP034054.1_195102_196107_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|137aa|down_7|CP034054.1_196477_196888_-	NA	NA|308aa|down_8|CP034054.1_197119_198043_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|276aa|down_9|CP034054.1_198787_199615_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
