assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003855315.1_ASM385531v1	CP034045	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 chromosome, complete genome	1	2255633-2256211	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTCT,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,29,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	6,9,9	9	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j,TnsE_C	NA|79aa|up_3|CP034045.1_2251130_2251367_+,NA|60aa|down_0|CP034045.1_2256388_2256568_+	NA|411aa|up_9|CP034045.1_2242563_2243796_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_8|CP034045.1_2244361_2244796_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_7|CP034045.1_2244911_2246111_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_6|CP034045.1_2246406_2247564_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_5|CP034045.1_2247606_2249757_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_4|CP034045.1_2250003_2251083_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|79aa|up_3|CP034045.1_2251130_2251367_+	NA	NA|363aa|up_2|CP034045.1_2251385_2252474_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|CP034045.1_2252547_2254317_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|CP034045.1_2254309_2255380_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|60aa|down_0|CP034045.1_2256388_2256568_+	NA	cas3|872aa|down_1|CP034045.1_2256622_2259238_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_2|CP034045.1_2259241_2260765_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_3|CP034045.1_2260776_2261343_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_4|CP034045.1_2261335_2261983_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_5|CP034045.1_2262012_2263047_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_6|CP034045.1_2263080_2263776_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_7|CP034045.1_2263775_2264651_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_8|CP034045.1_2264628_2264916_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_9|CP034045.1_2265906_2267022_+	PHA02053, PHA02053, hypothetical protein
GCA_003855315.1_ASM385531v1	CP034045	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 chromosome, complete genome	2	2264964-2265671	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTCT,GTCTTCCCCACGCACGTGGGGGTGTTTCT	28,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	10,11,11	11	TypeI-E	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j,TnsE_C	NA|60aa|up_8|CP034045.1_2256388_2256568_+,NA	NA|357aa|up_9|CP034045.1_2254309_2255380_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|60aa|up_8|CP034045.1_2256388_2256568_+	NA	cas3|872aa|up_7|CP034045.1_2256622_2259238_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|CP034045.1_2259241_2260765_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|CP034045.1_2260776_2261343_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|CP034045.1_2261335_2261983_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|CP034045.1_2262012_2263047_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_2|CP034045.1_2263080_2263776_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|CP034045.1_2263775_2264651_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|CP034045.1_2264628_2264916_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|CP034045.1_2265906_2267022_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|CP034045.1_2267032_2267716_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|CP034045.1_2267776_2268148_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|CP034045.1_2268652_2269405_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|CP034045.1_2269407_2271192_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|CP034045.1_2271205_2272543_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|CP034045.1_2272626_2273250_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|CP034045.1_2273246_2273906_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|CP034045.1_2273955_2274693_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|CP034045.1_2274689_2274920_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCA_003855315.1_ASM385531v1	CP034045	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 chromosome, complete genome	3	4264505-4264633	3	CRISPRCasFinder	no	DEDDh	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	Unclear	TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j,TnsE_C	NA,NA|70aa|down_7|CP034045.1_4270688_4270898_+	NA|428aa|up_9|CP034045.1_4254253_4255537_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|CP034045.1_4255672_4257073_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|CP034045.1_4257118_4257811_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|CP034045.1_4257896_4258295_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|CP034045.1_4258352_4259597_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|CP034045.1_4259702_4260161_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|CP034045.1_4260418_4261876_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|CP034045.1_4261918_4262371_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|CP034045.1_4262373_4263429_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|CP034045.1_4263588_4264449_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|CP034045.1_4264671_4264887_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|CP034045.1_4264889_4266113_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|CP034045.1_4266125_4266722_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|CP034045.1_4266728_4267367_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|CP034045.1_4267359_4268154_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|CP034045.1_4268146_4269385_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|CP034045.1_4269388_4270732_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|70aa|down_7|CP034045.1_4270688_4270898_+	NA	NA|247aa|down_8|CP034045.1_4271143_4271884_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_9|CP034045.1_4271854_4272622_-	pfam13230, GATase_4, Glutamine amidotransferases class-II
GCA_003855315.1_ASM385531v1	CP034046	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence	1	283711-284342	1	CRISPRCasFinder	no	DinG	RT,c2c9_V-U4,cas14j,TnsE_C,DinG	Type IV-A	CCGATAACCCCCGCACACGGGGG	23	0	0	NA	NA	NA	10	10	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j,TnsE_C	NA|77aa|up_9|CP034046.1_274050_274281_+,NA|62aa|up_8|CP034046.1_274683_274869_+,NA|236aa|down_1|CP034046.1_285448_286156_-,NA|264aa|down_4|CP034046.1_288595_289387_-,NA|137aa|down_7|CP034046.1_291814_292225_-	NA|77aa|up_9|CP034046.1_274050_274281_+	NA	NA|62aa|up_8|CP034046.1_274683_274869_+	NA	NA|160aa|up_7|CP034046.1_274865_275345_+	pfam18050, Cyclophil_like2, Cyclophilin-like family	NA|280aa|up_6|CP034046.1_275341_276181_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|335aa|up_5|CP034046.1_276374_277379_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|up_4|CP034046.1_278765_279236_-	pfam08808, RES, RES domain	NA|148aa|up_3|CP034046.1_279232_279676_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|424aa|up_2|CP034046.1_279776_281048_-	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|141aa|up_1|CP034046.1_281047_281470_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|141aa|up_0|CP034046.1_283045_283468_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|264aa|down_0|CP034046.1_284412_285204_-	pfam08317, Spc7, Spc7 kinetochore protein	NA|236aa|down_1|CP034046.1_285448_286156_-	NA	DinG|625aa|down_2|CP034046.1_286149_288024_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|189aa|down_3|CP034046.1_288026_288593_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|264aa|down_4|CP034046.1_288595_289387_-	NA	NA|138aa|down_5|CP034046.1_289449_289863_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|335aa|down_6|CP034046.1_290439_291444_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|137aa|down_7|CP034046.1_291814_292225_-	NA	NA|308aa|down_8|CP034046.1_292456_293380_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|276aa|down_9|CP034046.1_294124_294952_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
GCA_003855315.1_ASM385531v1	CP034051	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed6, complete sequence	1	785-882	1	CRISPRCasFinder	no			Orphan	CACTTTTACAACACTTTTACATCATTCCTTCAGC	34	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,c2c9_V-U4,cas14j,TnsE_C	NA,NA|109aa|down_1|CP034051.1_1699_2026_+,NA|38aa|down_2|CP034051.1_2918_3032_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|64aa|up_0|CP034051.1_267_459_+	pfam01815, Rop, Rop protein	NA|91aa|down_0|CP034051.1_1314_1587_+	cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs	NA|109aa|down_1|CP034051.1_1699_2026_+	NA	NA|38aa|down_2|CP034051.1_2918_3032_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
